Articles | Volume 15, issue 7
https://doi.org/10.5194/gmd-15-3121-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-15-3121-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
| 
18 Apr 2022
Development and technical paper |
| 18 Apr 2022
Predicting global terrestrial biomes with the LeNet convolutional neural network
Research Institute for Global Change (RIGC), Japan Agency for
Marine-Earth Science and Technology (JAMSTEC), Yokohama, 236-0001, Japan
Takeshi Ise
Field Science Education and Research Center (FSERC), Kyoto University,
Kyoto, 606-8502, Japan
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Shanlin Tong, Weiguang Wang, Jie Chen, Chong-Yu Xu, Hisashi Sato, and Guoqing Wang
Geosci. Model Dev., 15, 7075–7098, https://doi.org/10.5194/gmd-15-7075-2022, https://doi.org/10.5194/gmd-15-7075-2022, 2022
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Plant carbon storage potential is central to moderate atmospheric CO2 concentration buildup and mitigation of climate change. There is an ongoing debate about the main driver of carbon storage. To reconcile this discrepancy, we use SEIB-DGVM to investigate the trend and response mechanism of carbon stock fractions among water limitation regions. Results show that the impact of CO2 and temperature on carbon stock depends on water limitation, offering a new perspective on carbon–water coupling.
Thomas A. M. Pugh, Tim Rademacher, Sarah L. Shafer, Jörg Steinkamp, Jonathan Barichivich, Brian Beckage, Vanessa Haverd, Anna Harper, Jens Heinke, Kazuya Nishina, Anja Rammig, Hisashi Sato, Almut Arneth, Stijn Hantson, Thomas Hickler, Markus Kautz, Benjamin Quesada, Benjamin Smith, and Kirsten Thonicke
Biogeosciences, 17, 3961–3989, https://doi.org/10.5194/bg-17-3961-2020, https://doi.org/10.5194/bg-17-3961-2020, 2020
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The length of time that carbon remains in forest biomass is one of the largest uncertainties in the global carbon cycle. Estimates from six contemporary models found this time to range from 12.2 to 23.5 years for the global mean for 1985–2014. Future projections do not give consistent results, but 13 model-based hypotheses are identified, along with recommendations for pragmatic steps to test them using existing and novel observations, which would help to reduce large current uncertainty.
T. Sueyoshi, K. Saito, S. Miyazaki, J. Mori, T. Ise, H. Arakida, R. Suzuki, A. Sato, Y. Iijima, H. Yabuki, H. Ikawa, T. Ohta, A. Kotani, T. Hajima, H. Sato, T. Yamazaki, and A. Sugimoto
Earth Syst. Sci. Data, 8, 1–14, https://doi.org/10.5194/essd-8-1-2016, https://doi.org/10.5194/essd-8-1-2016, 2016
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This paper describes the construction of a forcing data set for land surface models (LSMs) with eight meteorological variables for the 35-year period from 1979 to 2013. The data set is intended for use in a model intercomparison (MIP) study, called GTMIP. In order to prepare a set of site-fitted forcing data for LSMs with realistic yet continuous entries, four observational sites were selected to construct a blended data set using both global reanalysis and observational data.
S. Miyazaki, K. Saito, J. Mori, T. Yamazaki, T. Ise, H. Arakida, T. Hajima, Y. Iijima, H. Machiya, T. Sueyoshi, H. Yabuki, E. J. Burke, M. Hosaka, K. Ichii, H. Ikawa, A. Ito, A. Kotani, Y. Matsuura, M. Niwano, T. Nitta, R. O'ishi, T. Ohta, H. Park, T. Sasai, A. Sato, H. Sato, A. Sugimoto, R. Suzuki, K. Tanaka, S. Yamaguchi, and K. Yoshimura
Geosci. Model Dev., 8, 2841–2856, https://doi.org/10.5194/gmd-8-2841-2015, https://doi.org/10.5194/gmd-8-2841-2015, 2015
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The paper provides an overall outlook and the Stage 1 experiment (site simulations) protocol of GTMIP, an open model intercomparison project for terrestrial Arctic, conducted as an activity of the Japan-funded Arctic Climate Change Research Project (GRENE-TEA). Models are driven by 34-year data created with the GRENE-TEA observations at four sites in Finland, Siberia and Alaska, and evaluated for physico-ecological key processes: energy budgets, snow, permafrost, phenology, and carbon budget.
Shanlin Tong, Weiguang Wang, Jie Chen, Chong-Yu Xu, Hisashi Sato, and Guoqing Wang
Geosci. Model Dev., 15, 7075–7098, https://doi.org/10.5194/gmd-15-7075-2022, https://doi.org/10.5194/gmd-15-7075-2022, 2022
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Plant carbon storage potential is central to moderate atmospheric CO2 concentration buildup and mitigation of climate change. There is an ongoing debate about the main driver of carbon storage. To reconcile this discrepancy, we use SEIB-DGVM to investigate the trend and response mechanism of carbon stock fractions among water limitation regions. Results show that the impact of CO2 and temperature on carbon stock depends on water limitation, offering a new perspective on carbon–water coupling.
Thomas A. M. Pugh, Tim Rademacher, Sarah L. Shafer, Jörg Steinkamp, Jonathan Barichivich, Brian Beckage, Vanessa Haverd, Anna Harper, Jens Heinke, Kazuya Nishina, Anja Rammig, Hisashi Sato, Almut Arneth, Stijn Hantson, Thomas Hickler, Markus Kautz, Benjamin Quesada, Benjamin Smith, and Kirsten Thonicke
Biogeosciences, 17, 3961–3989, https://doi.org/10.5194/bg-17-3961-2020, https://doi.org/10.5194/bg-17-3961-2020, 2020
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The length of time that carbon remains in forest biomass is one of the largest uncertainties in the global carbon cycle. Estimates from six contemporary models found this time to range from 12.2 to 23.5 years for the global mean for 1985–2014. Future projections do not give consistent results, but 13 model-based hypotheses are identified, along with recommendations for pragmatic steps to test them using existing and novel observations, which would help to reduce large current uncertainty.
Hazuki Arakida, Takemasa Miyoshi, Takeshi Ise, Shin-ichiro Shima, and Shunji Kotsuki
Nonlin. Processes Geophys., 24, 553–567, https://doi.org/10.5194/npg-24-553-2017, https://doi.org/10.5194/npg-24-553-2017, 2017
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This is the first study assimilating the satellite-based leaf area index observations every 4 days into a numerical model simulating the growth and death of individual plants. The newly developed data assimilation system successfully reduced the uncertainties of the model parameters related to phenology and carbon dynamics. It also provides better estimates of the present vegetation structure which can be used as the initial states for the simulation of the future vegetation change.
T. Sueyoshi, K. Saito, S. Miyazaki, J. Mori, T. Ise, H. Arakida, R. Suzuki, A. Sato, Y. Iijima, H. Yabuki, H. Ikawa, T. Ohta, A. Kotani, T. Hajima, H. Sato, T. Yamazaki, and A. Sugimoto
Earth Syst. Sci. Data, 8, 1–14, https://doi.org/10.5194/essd-8-1-2016, https://doi.org/10.5194/essd-8-1-2016, 2016
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This paper describes the construction of a forcing data set for land surface models (LSMs) with eight meteorological variables for the 35-year period from 1979 to 2013. The data set is intended for use in a model intercomparison (MIP) study, called GTMIP. In order to prepare a set of site-fitted forcing data for LSMs with realistic yet continuous entries, four observational sites were selected to construct a blended data set using both global reanalysis and observational data.
S. Miyazaki, K. Saito, J. Mori, T. Yamazaki, T. Ise, H. Arakida, T. Hajima, Y. Iijima, H. Machiya, T. Sueyoshi, H. Yabuki, E. J. Burke, M. Hosaka, K. Ichii, H. Ikawa, A. Ito, A. Kotani, Y. Matsuura, M. Niwano, T. Nitta, R. O'ishi, T. Ohta, H. Park, T. Sasai, A. Sato, H. Sato, A. Sugimoto, R. Suzuki, K. Tanaka, S. Yamaguchi, and K. Yoshimura
Geosci. Model Dev., 8, 2841–2856, https://doi.org/10.5194/gmd-8-2841-2015, https://doi.org/10.5194/gmd-8-2841-2015, 2015
Short summary
Short summary
The paper provides an overall outlook and the Stage 1 experiment (site simulations) protocol of GTMIP, an open model intercomparison project for terrestrial Arctic, conducted as an activity of the Japan-funded Arctic Climate Change Research Project (GRENE-TEA). Models are driven by 34-year data created with the GRENE-TEA observations at four sites in Finland, Siberia and Alaska, and evaluated for physico-ecological key processes: energy budgets, snow, permafrost, phenology, and carbon budget.
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Arsène Druel, Simon Munier, Anthony Mucia, Clément Albergel, and Jean-Christophe Calvet
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Ensheng Weng, Igor Aleinov, Ram Singh, Michael J. Puma, Sonali S. McDermid, Nancy Y. Kiang, Maxwell Kelley, Kevin Wilcox, Ray Dybzinski, Caroline E. Farrior, Stephen W. Pacala, and Benjamin I. Cook
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We develop a demographic vegetation model to improve the representation of terrestrial vegetation dynamics and ecosystem biogeochemical cycles in the Goddard Institute for Space Studies ModelE. The individual-based competition for light and soil resources makes the modeling of eco-evolutionary optimality possible. This model will enable ModelE to simulate long-term biogeophysical and biogeochemical feedbacks between the climate system and land ecosystems at decadal to centurial temporal scales.
Yitong Yao, Emilie Joetzjer, Philippe Ciais, Nicolas Viovy, Fabio Cresto Aleina, Jerome Chave, Lawren Sack, Megan Bartlett, Patrick Meir, Rosie Fisher, and Sebastiaan Luyssaert
Geosci. Model Dev., 15, 7809–7833, https://doi.org/10.5194/gmd-15-7809-2022, https://doi.org/10.5194/gmd-15-7809-2022, 2022
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To facilitate more mechanistic modeling of drought effects on forest dynamics, our study implements a hydraulic module to simulate the vertical water flow, change in water storage and percentage loss of stem conductance (PLC). With the relationship between PLC and tree mortality, our model can successfully reproduce the large biomass drop observed under throughfall exclusion. Our hydraulic module provides promising avenues benefiting the prediction for mortality under future drought events.
Arthur Nicolaus Fendrich, Philippe Ciais, Emanuele Lugato, Marco Carozzi, Bertrand Guenet, Pasquale Borrelli, Victoria Naipal, Matthew McGrath, Philippe Martin, and Panos Panagos
Geosci. Model Dev., 15, 7835–7857, https://doi.org/10.5194/gmd-15-7835-2022, https://doi.org/10.5194/gmd-15-7835-2022, 2022
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Currently, spatially explicit models for soil carbon stock can simulate the impacts of several changes. However, they do not incorporate the erosion, lateral transport, and deposition (ETD) of soil material. The present work developed ETD formulation, illustrated model calibration and validation for Europe, and presented the results for a depositional site. We expect that our work advances ETD models' description and facilitates their reproduction and incorporation in land surface models.
Kazumi Ozaki, Devon B. Cole, Christopher T. Reinhard, and Eiichi Tajika
Geosci. Model Dev., 15, 7593–7639, https://doi.org/10.5194/gmd-15-7593-2022, https://doi.org/10.5194/gmd-15-7593-2022, 2022
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A new biogeochemical model (CANOPS-GRB v1.0) for assessing the redox stability and dynamics of the ocean–atmosphere system on geologic timescales has been developed. In this paper, we present a full description of the model and its performance. CANOPS-GRB is a useful tool for understanding the factors regulating atmospheric O2 level and has the potential to greatly refine our current understanding of Earth's oxygenation history.
Félicien Meunier, Wim Verbruggen, Hans Verbeeck, and Marc Peaucelle
Geosci. Model Dev., 15, 7573–7591, https://doi.org/10.5194/gmd-15-7573-2022, https://doi.org/10.5194/gmd-15-7573-2022, 2022
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Drought stress occurs in plants when water supply (i.e. root water uptake) is lower than the water demand (i.e. atmospheric demand). It is strongly related to soil properties and expected to increase in intensity and frequency in the tropics due to climate change. In this study, we show that contrary to the expectations, state-of-the-art terrestrial biosphere models are mostly insensitive to soil texture and hence probably inadequate to reproduce in silico the plant water status in drying soils.
Stanley I. Nmor, Eric Viollier, Lucie Pastor, Bruno Lansard, Christophe Rabouille, and Karline Soetaert
Geosci. Model Dev., 15, 7325–7351, https://doi.org/10.5194/gmd-15-7325-2022, https://doi.org/10.5194/gmd-15-7325-2022, 2022
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The coastal marine environment serves as a transition zone in the land–ocean continuum and is susceptible to episodic phenomena such as flash floods, which cause massive organic matter deposition. Here, we present a model of sediment early diagenesis that explicitly describes this type of deposition while also incorporating unique flood deposit characteristics. This model can be used to investigate the temporal evolution of marine sediments following abrupt changes in environmental conditions.
Heewon Jung, Hyun-Seob Song, and Christof Meile
EGUsphere, https://doi.org/10.5194/egusphere-2022-1016, https://doi.org/10.5194/egusphere-2022-1016, 2022
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Microbial activity responsible for many chemical transformations depends on environmental conditions. These can vary locally, e.g., between poorly connected pores in porous media. We present a modelling framework that resolves such small spatial scales explicitly, accounts for feedback between transport and biogeochemical conditions and can integrate state-of-the-art representations of microbes in a computationally efficient way, making it broadly applicable in science and engineering use cases.
Shanlin Tong, Weiguang Wang, Jie Chen, Chong-Yu Xu, Hisashi Sato, and Guoqing Wang
Geosci. Model Dev., 15, 7075–7098, https://doi.org/10.5194/gmd-15-7075-2022, https://doi.org/10.5194/gmd-15-7075-2022, 2022
Short summary
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Plant carbon storage potential is central to moderate atmospheric CO2 concentration buildup and mitigation of climate change. There is an ongoing debate about the main driver of carbon storage. To reconcile this discrepancy, we use SEIB-DGVM to investigate the trend and response mechanism of carbon stock fractions among water limitation regions. Results show that the impact of CO2 and temperature on carbon stock depends on water limitation, offering a new perspective on carbon–water coupling.
Jing Fang, Herman H. Shugart, Feng Liu, Xiaodong Yan, Yunkun Song, and Fucheng Lv
Geosci. Model Dev., 15, 6863–6872, https://doi.org/10.5194/gmd-15-6863-2022, https://doi.org/10.5194/gmd-15-6863-2022, 2022
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Our study provided a detailed description and a package of an individual tree-based carbon model, FORCCHN2. This model used non-structural carbohydrate (NSC) pools to couple tree growth and phenology. The model could reproduce daily carbon fluxes across Northern Hemisphere forests. Given the potential importance of the application of this model, there is substantial scope for using FORCCHN2 in fields as diverse as forest ecology, climate change, and carbon estimation.
Johannes Oberpriller, Christine Herschlein, Peter Anthoni, Almut Arneth, Andreas Krause, Anja Rammig, Mats Lindeskog, Stefan Olin, and Florian Hartig
Geosci. Model Dev., 15, 6495–6519, https://doi.org/10.5194/gmd-15-6495-2022, https://doi.org/10.5194/gmd-15-6495-2022, 2022
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Understanding uncertainties of projected ecosystem dynamics under environmental change is of immense value for research and climate change policy. Here, we analyzed these across European forests. We find that uncertainties are dominantly induced by parameters related to water, mortality, and climate, with an increasing importance of climate from north to south. These results highlight that climate not only contributes uncertainty but also modifies uncertainties in other ecosystem processes.
Marcus Falls, Raffaele Bernardello, Miguel Castrillo, Mario Acosta, Joan Llort, and Martí Galí
Geosci. Model Dev., 15, 5713–5737, https://doi.org/10.5194/gmd-15-5713-2022, https://doi.org/10.5194/gmd-15-5713-2022, 2022
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This paper describes and tests a method which uses a genetic algorithm (GA), a type of optimisation algorithm, on an ocean biogeochemical model. The aim is to produce a set of numerical parameters that best reflect the observed data of particulate organic carbon in a specific region of the ocean. We show that the GA can provide optimised model parameters in a robust and efficient manner and can also help detect model limitations, ultimately leading to a reduction in the model uncertainties.
Julien Ruffault, François Pimont, Hervé Cochard, Jean-Luc Dupuy, and Nicolas Martin-StPaul
Geosci. Model Dev., 15, 5593–5626, https://doi.org/10.5194/gmd-15-5593-2022, https://doi.org/10.5194/gmd-15-5593-2022, 2022
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A widespread increase in tree mortality has been observed around the globe, and this trend is likely to continue because of ongoing climate change. Here we present SurEau-Ecos, a trait-based plant hydraulic model to predict tree desiccation and mortality. SurEau-Ecos can help determine the areas and ecosystems that are most vulnerable to drying conditions.
Rebecca J. Oliver, Lina M. Mercado, Doug B. Clark, Chris Huntingford, Christopher M. Taylor, Pier Luigi Vidale, Patrick C. McGuire, Markus Todt, Sonja Folwell, Valiyaveetil Shamsudheen Semeena, and Belinda E. Medlyn
Geosci. Model Dev., 15, 5567–5592, https://doi.org/10.5194/gmd-15-5567-2022, https://doi.org/10.5194/gmd-15-5567-2022, 2022
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We introduce new representations of plant physiological processes into a land surface model. Including new biological understanding improves modelled carbon and water fluxes for the present in tropical and northern-latitude forests. Future climate simulations demonstrate the sensitivity of photosynthesis to temperature is important for modelling carbon cycle dynamics in a warming world. Accurate representation of these processes in models is necessary for robust predictions of climate change.
Mahdi André Nakhavali, Lina M. Mercado, Iain P. Hartley, Stephen Sitch, Fernanda V. Cunha, Raffaello di Ponzio, Laynara F. Lugli, Carlos A. Quesada, Kelly M. Andersen, Sarah E. Chadburn, Andy J. Wiltshire, Douglas B. Clark, Gyovanni Ribeiro, Lara Siebert, Anna C. M. Moraes, Jéssica Schmeisk Rosa, Rafael Assis, and José L. Camargo
Geosci. Model Dev., 15, 5241–5269, https://doi.org/10.5194/gmd-15-5241-2022, https://doi.org/10.5194/gmd-15-5241-2022, 2022
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In tropical ecosystems, the availability of rock-derived elements such as P can be very low. Thus, without a representation of P cycling, tropical forest responses to rising atmospheric CO2 conditions in areas such as Amazonia remain highly uncertain. We introduced P dynamics and its interactions with the N and P cycles into the JULES model. Our results highlight the potential for high P limitation and therefore lower CO2 fertilization capacity in the Amazon forest with low-fertility soils.
Olga Dombrowski, Cosimo Brogi, Harrie-Jan Hendricks Franssen, Damiano Zanotelli, and Heye Bogena
Geosci. Model Dev., 15, 5167–5193, https://doi.org/10.5194/gmd-15-5167-2022, https://doi.org/10.5194/gmd-15-5167-2022, 2022
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Soil carbon storage and food production of fruit orchards will be influenced by climate change. However, they lack representation in models that study such processes. We developed and tested a new sub-model, CLM5-FruitTree, that describes growth, biomass distribution, and management practices in orchards. The model satisfactorily predicted yield and exchange of carbon, energy, and water in an apple orchard and can be used to study land surface processes in fruit orchards at different scales.
Jiaying Zhang, Rafael L. Bras, Marcos Longo, and Tamara Heartsill Scalley
Geosci. Model Dev., 15, 5107–5126, https://doi.org/10.5194/gmd-15-5107-2022, https://doi.org/10.5194/gmd-15-5107-2022, 2022
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We implemented hurricane disturbance in a vegetation dynamics model and calibrated the model with observations of a tropical forest. We used the model to study forest recovery from hurricane disturbance and found that a single hurricane disturbance enhances AGB and BA in the long term compared with a no-hurricane situation. The model developed and results presented in this study can be utilized to understand the impact of hurricane disturbances on forest recovery under the changing climate.
Prabhat Raj Dahal, Maria Lumbierres, Stuart H. M. Butchart, Paul F. Donald, and Carlo Rondinini
Geosci. Model Dev., 15, 5093–5105, https://doi.org/10.5194/gmd-15-5093-2022, https://doi.org/10.5194/gmd-15-5093-2022, 2022
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This paper describes the validation of area of habitat (AOH) maps produced for terrestrial birds and mammals. The main objective was to assess the accuracy of the maps based on independent data. We used open access data from repositories, such as ebird and gbif to check if our maps were a better reflection of species' distribution than random. When points were not available we used logistic models to validate the AOH maps. The majority of AOH maps were found to have a high accuracy.
Yoshiki Kanzaki, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 15, 4959–4990, https://doi.org/10.5194/gmd-15-4959-2022, https://doi.org/10.5194/gmd-15-4959-2022, 2022
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Increasing carbon dioxide in the atmosphere is an urgent issue in the coming century. Enhanced rock weathering in soils can be one of the most efficient C capture strategies. On the basis as a weathering simulator, the newly developed SCEPTER model implements bio-mixing by fauna/humans and enables organic matter and crushed rocks/minerals at the soil surface with an option to track their particle size distributions. Those features can be useful for evaluating the carbon capture efficiency.
Félicien Meunier, Sruthi M. Krishna Moorthy, Marc Peaucelle, Kim Calders, Louise Terryn, Wim Verbruggen, Chang Liu, Ninni Saarinen, Niall Origo, Joanne Nightingale, Mathias Disney, Yadvinder Malhi, and Hans Verbeeck
Geosci. Model Dev., 15, 4783–4803, https://doi.org/10.5194/gmd-15-4783-2022, https://doi.org/10.5194/gmd-15-4783-2022, 2022
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We integrated state-of-the-art observations of the structure of the vegetation in a temperate forest to constrain a vegetation model that aims to reproduce such an ecosystem in silico. We showed that the use of this information helps to constrain the model structure, its critical parameters, as well as its initial state. This research confirms the critical importance of the representation of the vegetation structure in vegetation models and proposes a method to overcome this challenge.
Joe R. Melton, Ed Chan, Koreen Millard, Matthew Fortier, R. Scott Winton, Javier M. Martín-López, Hinsby Cadillo-Quiroz, Darren Kidd, and Louis V. Verchot
Geosci. Model Dev., 15, 4709–4738, https://doi.org/10.5194/gmd-15-4709-2022, https://doi.org/10.5194/gmd-15-4709-2022, 2022
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Peat-ML is a high-resolution global peatland extent map generated using machine learning techniques. Peatlands are important in the global carbon and water cycles, but their extent is poorly known. We generated Peat-ML using drivers of peatland formation including climate, soil, geomorphology, and vegetation data, and we train the model with regional peatland maps. Our accuracy estimation approaches suggest Peat-ML is of similar or higher quality than other available peatland mapping products.
Qianyu Li, Shawn P. Serbin, Julien Lamour, Kenneth J. Davidson, Kim S. Ely, and Alistair Rogers
Geosci. Model Dev., 15, 4313–4329, https://doi.org/10.5194/gmd-15-4313-2022, https://doi.org/10.5194/gmd-15-4313-2022, 2022
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Stomatal conductance is the rate of water release from leaves’ pores. We implemented an optimal stomatal conductance model in a vegetation model. We then tested and compared it with the existing empirical model in terms of model responses to key environmental variables. We also evaluated the model with measurements at a tropical forest site. Our study suggests that the parameterization of conductance models and current model response to drought are the critical areas for improving models.
Veli Çağlar Yumruktepe, Annette Samuelsen, and Ute Daewel
Geosci. Model Dev., 15, 3901–3921, https://doi.org/10.5194/gmd-15-3901-2022, https://doi.org/10.5194/gmd-15-3901-2022, 2022
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We describe the coupled bio-physical model ECOSMO II(CHL), which is used for regional configurations for the North Atlantic and the Arctic hind-casting and operational purposes. The model is consistent with the large-scale climatological nutrient settings and is capable of representing regional and seasonal changes, and model primary production agrees with previous measurements. For the users of this model, this paper provides the underlying science, model evaluation and its development.
Nicolas Azaña Schnedler-Meyer, Tobias Kuhlmann Andersen, Fenjuan Rose Schmidt Hu, Karsten Bolding, Anders Nielsen, and Dennis Trolle
Geosci. Model Dev., 15, 3861–3878, https://doi.org/10.5194/gmd-15-3861-2022, https://doi.org/10.5194/gmd-15-3861-2022, 2022
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We present the Water Ecosystems Tool (WET) – a new modular aquatic ecosystem model configurable to a wide array of physical setups, ecosystems and research questions based on the popular FABM–PCLake model. We aim for the model to become a community staple, thus helping to consolidate the state of the art under a few flexible models, with the aim of improving comparability across studies and preventing the
re-inventions of the wheelthat are common to our scientific modeling community.
Hamze Dokoohaki, Bailey D. Morrison, Ann Raiho, Shawn P. Serbin, Katie Zarada, Luke Dramko, and Michael Dietze
Geosci. Model Dev., 15, 3233–3252, https://doi.org/10.5194/gmd-15-3233-2022, https://doi.org/10.5194/gmd-15-3233-2022, 2022
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We present a new terrestrial carbon cycle data assimilation system, built on the PEcAn model–data eco-informatics system, and its application for the development of a proof-of-concept carbon
reanalysisproduct that harmonizes carbon pools (leaf, wood, soil) and fluxes (GPP, Ra, Rh, NEE) across the contiguous United States from 1986–2019. Here, we build on a decade of work on uncertainty propagation to generate the most complete and robust uncertainty accounting available to date.
Licheng Liu, Shaoming Xu, Jinyun Tang, Kaiyu Guan, Timothy J. Griffis, Matthew D. Erickson, Alexander L. Frie, Xiaowei Jia, Taegon Kim, Lee T. Miller, Bin Peng, Shaowei Wu, Yufeng Yang, Wang Zhou, Vipin Kumar, and Zhenong Jin
Geosci. Model Dev., 15, 2839–2858, https://doi.org/10.5194/gmd-15-2839-2022, https://doi.org/10.5194/gmd-15-2839-2022, 2022
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By incorporating the domain knowledge into a machine learning model, KGML-ag overcomes the well-known limitations of process-based models due to insufficient representations and constraints, and unlocks the “black box” of machine learning models. Therefore, KGML-ag can outperform existing approaches on capturing the hot moment and complex dynamics of N2O flux. This study will be a critical reference for the new generation of modeling paradigm for biogeochemistry and other geoscience processes.
Elodie Salmon, Fabrice Jégou, Bertrand Guenet, Line Jourdain, Chunjing Qiu, Vladislav Bastrikov, Christophe Guimbaud, Dan Zhu, Philippe Ciais, Philippe Peylin, Sébastien Gogo, Fatima Laggoun-Défarge, Mika Aurela, M. Syndonia Bret-Harte, Jiquan Chen, Bogdan H. Chojnicki, Housen Chu, Colin W. Edgar, Eugenie S. Euskirchen, Lawrence B. Flanagan, Krzysztof Fortuniak, David Holl, Janina Klatt, Olaf Kolle, Natalia Kowalska, Lars Kutzbach, Annalea Lohila, Lutz Merbold, Włodzimierz Pawlak, Torsten Sachs, and Klaudia Ziemblińska
Geosci. Model Dev., 15, 2813–2838, https://doi.org/10.5194/gmd-15-2813-2022, https://doi.org/10.5194/gmd-15-2813-2022, 2022
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A methane model that features methane production and transport by plants, the ebullition process and diffusion in soil, oxidation to CO2, and CH4 fluxes to the atmosphere has been embedded in the ORCHIDEE-PEAT land surface model, which includes an explicit representation of northern peatlands. This model, ORCHIDEE-PCH4, was calibrated and evaluated on 14 peatland sites. Results show that the model is sensitive to temperature and substrate availability over the top 75 cm of soil depth.
Suman Halder, Susanne K. M. Arens, Kai Jensen, Tais W. Dahl, and Philipp Porada
Geosci. Model Dev., 15, 2325–2343, https://doi.org/10.5194/gmd-15-2325-2022, https://doi.org/10.5194/gmd-15-2325-2022, 2022
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A dynamic vegetation model, designed to estimate potential impacts of early vascular vegetation, namely, lycopsids, on the biogeochemical cycle at a local scale. Lycopsid Model (LYCOm) estimates the productivity and physiological properties of lycopsids across a broad climatic range along with natural selection, which is then utilized to adjudge their weathering potential. It lays the foundation for estimation of their impacts during their long evolutionary history starting from the Ordovician.
Dóra Hidy, Zoltán Barcza, Roland Hollós, Laura Dobor, Tamás Ács, Dóra Zacháry, Tibor Filep, László Pásztor, Dóra Incze, Márton Dencső, Eszter Tóth, Katarína Merganičová, Peter Thornton, Steven Running, and Nándor Fodor
Geosci. Model Dev., 15, 2157–2181, https://doi.org/10.5194/gmd-15-2157-2022, https://doi.org/10.5194/gmd-15-2157-2022, 2022
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Biogeochemical models used by the scientific community can support society in the quantification of the expected environmental impacts caused by global climate change. The Biome-BGCMuSo v6.2 biogeochemical model has been created by implementing a lot of developments related to soil hydrology as well as the soil carbon and nitrogen cycle and by integrating crop model components. Detailed descriptions of developments with case studies are presented in this paper.
Lei Ma, George Hurtt, Lesley Ott, Ritvik Sahajpal, Justin Fisk, Rachel Lamb, Hao Tang, Steve Flanagan, Louise Chini, Abhishek Chatterjee, and Joseph Sullivan
Geosci. Model Dev., 15, 1971–1994, https://doi.org/10.5194/gmd-15-1971-2022, https://doi.org/10.5194/gmd-15-1971-2022, 2022
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We present a global version of the Ecosystem Demography (ED) model which can track vegetation 3-D structure and scale up ecological processes from individual vegetation to ecosystem scale. Model evaluation against multiple benchmarking datasets demonstrated the model’s capability to simulate global vegetation dynamics across a range of temporal and spatial scales. With this version, ED has the potential to be linked with remote sensing observations to address key scientific questions.
Ignacio Hermoso de Mendoza, Etienne Boucher, Fabio Gennaretti, Aliénor Lavergne, Robert Field, and Laia Andreu-Hayles
Geosci. Model Dev., 15, 1931–1952, https://doi.org/10.5194/gmd-15-1931-2022, https://doi.org/10.5194/gmd-15-1931-2022, 2022
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We modify the numerical model of forest growth MAIDENiso by explicitly simulating snow. This allows us to use the model in boreal environments, where snow is dominant. We tested the performance of the model before and after adding snow, using it at two Canadian sites to simulate tree-ring isotopes and comparing with local observations. We found that modelling snow improves significantly the simulation of the hydrological cycle, the plausibility of the model and the simulated isotopes.
Toni Viskari, Janne Pusa, Istem Fer, Anna Repo, Julius Vira, and Jari Liski
Geosci. Model Dev., 15, 1735–1752, https://doi.org/10.5194/gmd-15-1735-2022, https://doi.org/10.5194/gmd-15-1735-2022, 2022
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We wanted to examine how the chosen measurement data and calibration process affect soil organic carbon model calibration. In our results we found that there is a benefit in using data from multiple litter-bag decomposition experiments simultaneously, even with the required assumptions. Additionally, due to the amount of noise and uncertainties in the system, more advanced calibration methods should be used to parameterize the models.
Glenn E. Hammond
Geosci. Model Dev., 15, 1659–1676, https://doi.org/10.5194/gmd-15-1659-2022, https://doi.org/10.5194/gmd-15-1659-2022, 2022
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This paper describes a simplified interface for implementing and testing new chemical reactions within the reactive transport simulator PFLOTRAN. The paper describes the interface, providing example code for the interface. The paper includes several chemical reactions implemented through the interface.
Sarah E. Chadburn, Eleanor J. Burke, Angela V. Gallego-Sala, Noah D. Smith, M. Syndonia Bret-Harte, Dan J. Charman, Julia Drewer, Colin W. Edgar, Eugenie S. Euskirchen, Krzysztof Fortuniak, Yao Gao, Mahdi Nakhavali, Włodzimierz Pawlak, Edward A. G. Schuur, and Sebastian Westermann
Geosci. Model Dev., 15, 1633–1657, https://doi.org/10.5194/gmd-15-1633-2022, https://doi.org/10.5194/gmd-15-1633-2022, 2022
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We present a new method to include peatlands in an Earth system model (ESM). Peatlands store huge amounts of carbon that accumulates very slowly but that can be rapidly destabilised, emitting greenhouse gases. Our model captures the dynamic nature of peat by simulating the change in surface height and physical properties of the soil as carbon is added or decomposed. Thus, we model, for the first time in an ESM, peat dynamics and its threshold behaviours that can lead to destabilisation.
Philippe Ciais, Ana Bastos, Frédéric Chevallier, Ronny Lauerwald, Ben Poulter, Josep G. Canadell, Gustaf Hugelius, Robert B. Jackson, Atul Jain, Matthew Jones, Masayuki Kondo, Ingrid T. Luijkx, Prabir K. Patra, Wouter Peters, Julia Pongratz, Ana Maria Roxana Petrescu, Shilong Piao, Chunjing Qiu, Celso Von Randow, Pierre Regnier, Marielle Saunois, Robert Scholes, Anatoly Shvidenko, Hanqin Tian, Hui Yang, Xuhui Wang, and Bo Zheng
Geosci. Model Dev., 15, 1289–1316, https://doi.org/10.5194/gmd-15-1289-2022, https://doi.org/10.5194/gmd-15-1289-2022, 2022
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The second phase of the Regional Carbon Cycle Assessment and Processes (RECCAP) will provide updated quantification and process understanding of CO2, CH4, and N2O emissions and sinks for ten regions of the globe. In this paper, we give definitions, review different methods, and make recommendations for estimating different components of the total land–atmosphere carbon exchange for each region in a consistent and complete approach.
Nils Wallenberg, Fredrik Lindberg, and David Rayner
Geosci. Model Dev., 15, 1107–1128, https://doi.org/10.5194/gmd-15-1107-2022, https://doi.org/10.5194/gmd-15-1107-2022, 2022
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Exposure to solar radiation on clear and warm days can lead to heat stress and thermal discomfort. This can be alleviated by planting trees providing shade in particularly warm areas. Here, we use a model to locate trees and optimize their blocking of solar radiation. Our results show that locations can differ depending, e.g., tree size (juvenile or mature) and number of trees that are positioned simultaneously. The model is available as a tool for accessibility by researchers and others.
Kai Wang, Xiujun Wang, Raghu Murtugudde, Dongxiao Zhang, and Rong-Hua Zhang
Geosci. Model Dev., 15, 1017–1035, https://doi.org/10.5194/gmd-15-1017-2022, https://doi.org/10.5194/gmd-15-1017-2022, 2022
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We use observational data of dissolved oxygen (DO) and organic nitrogen to calibrate a basin-scale model (OGCM-DEMC V1.4) and then evaluate model capacity for simulating mid-depth DO in the tropical Pacific. Sensitivity studies show that enhanced vertical mixing combined with reduced biological consumption performs well in reproducing asymmetric oxygen minimum zones (OMZs). We find that DO is more sensitive to biological processes in the upper OMZs but to physical processes in the lower OMZs.
Pedro Duarte, Philipp Assmy, Karley Campbell, and Arild Sundfjord
Geosci. Model Dev., 15, 841–857, https://doi.org/10.5194/gmd-15-841-2022, https://doi.org/10.5194/gmd-15-841-2022, 2022
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Sea ice modeling is an important part of Earth system models (ESMs). The results of ESMs are used by the Intergovernmental Panel on Climate Change in their reports. In this study we present an improvement to calculate the exchange of nutrients between the ocean and the sea ice. This nutrient exchange is an essential process to keep the ice-associated ecosystem functioning. We found out that previous calculation methods may underestimate the primary production of the ice-associated ecosystem.
Jianyong Ma, Stefan Olin, Peter Anthoni, Sam S. Rabin, Anita D. Bayer, Sylvia S. Nyawira, and Almut Arneth
Geosci. Model Dev., 15, 815–839, https://doi.org/10.5194/gmd-15-815-2022, https://doi.org/10.5194/gmd-15-815-2022, 2022
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The implementation of the biological N fixation process in LPJ-GUESS in this study provides an opportunity to quantify N fixation rates between legumes and to better estimate grain legume production on a global scale. It also helps to predict and detect the potential contribution of N-fixing plants as
green manureto reducing or removing the use of N fertilizer in global agricultural systems, considering different climate conditions, management practices, and land-use change scenarios.
Giannis Sofiadis, Eleni Katragkou, Edouard L. Davin, Diana Rechid, Nathalie de Noblet-Ducoudre, Marcus Breil, Rita M. Cardoso, Peter Hoffmann, Lisa Jach, Ronny Meier, Priscilla A. Mooney, Pedro M. M. Soares, Susanna Strada, Merja H. Tölle, and Kirsten Warrach Sagi
Geosci. Model Dev., 15, 595–616, https://doi.org/10.5194/gmd-15-595-2022, https://doi.org/10.5194/gmd-15-595-2022, 2022
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Afforestation is currently promoted as a greenhouse gas mitigation strategy. In our study, we examine the differences in soil temperature and moisture between grounds covered either by forests or grass. The main conclusion emerged is that forest-covered grounds are cooler but drier than open lands in summer. Therefore, afforestation disrupts the seasonal cycle of soil temperature, which in turn could trigger changes in crucial chemical processes such as soil carbon sequestration.
Wei Zhi, Yuning Shi, Hang Wen, Leila Saberi, Gene-Hua Crystal Ng, Kayalvizhi Sadayappan, Devon Kerins, Bryn Stewart, and Li Li
Geosci. Model Dev., 15, 315–333, https://doi.org/10.5194/gmd-15-315-2022, https://doi.org/10.5194/gmd-15-315-2022, 2022
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Watersheds are the fundamental Earth surface functioning unit that connects the land to aquatic systems. Here we present the recently developed BioRT-Flux-PIHM v1.0, a watershed-scale biogeochemical reactive transport model, to improve our ability to understand and predict solute export and water quality. The model has been verified against the benchmark code CrunchTope and has recently been applied to understand reactive transport processes in multiple watersheds of different conditions.
Huilin Huang, Yongkang Xue, Ye Liu, Fang Li, and Gregory S. Okin
Geosci. Model Dev., 14, 7639–7657, https://doi.org/10.5194/gmd-14-7639-2021, https://doi.org/10.5194/gmd-14-7639-2021, 2021
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This study applies a fire-coupled dynamic vegetation model to quantify fire impact at monthly to annual scales. We find fire reduces grass cover by 4–8 % annually for widespread areas in south African savanna and reduces tree cover by 1 % at the periphery of tropical Congolese rainforest. The grass cover reduction peaks at the beginning of the rainy season, which quickly diminishes before the next fire season. In contrast, the reduction of tree cover is irreversible within one growing season.
Karin Kvale, David P. Keller, Wolfgang Koeve, Katrin J. Meissner, Christopher J. Somes, Wanxuan Yao, and Andreas Oschlies
Geosci. Model Dev., 14, 7255–7285, https://doi.org/10.5194/gmd-14-7255-2021, https://doi.org/10.5194/gmd-14-7255-2021, 2021
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We present a new model of biological marine silicate cycling for the University of Victoria Earth System Climate Model (UVic ESCM). This new model adds diatoms, which are a key aspect of the biological carbon pump, to an existing ecosystem model. Our modifications change how the model responds to warming, with net primary production declining more strongly than in previous versions. Diatoms in particular are simulated to decline with climate warming due to their high nutrient requirements.
Shannon de Roos, Gabriëlle J. M. De Lannoy, and Dirk Raes
Geosci. Model Dev., 14, 7309–7328, https://doi.org/10.5194/gmd-14-7309-2021, https://doi.org/10.5194/gmd-14-7309-2021, 2021
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A spatially distributed version of the field-scale crop model AquaCrop v6.1 was developed for applications at various spatial scales. Multi-year 1 km simulations over central Europe were evaluated against biomass and surface soil moisture products derived from optical and microwave satellite missions, as well as in situ observations of soil moisture. The regional version of the AquaCrop model provides a suitable setup for subsequent satellite-based data assimilation.
Cited articles
Benkendorf, D. J. and Hawkins, C. P.: Effects of sample size and network
depth on a deep learning approach to species distribution modeling,
Ecol. Inform., 60, 101137, https://doi.org/10.1016/j.ecoinf.2020.101137, 2020.
Bond, W. J., Midgley, G. F., and Woodward, F. I.: The importance of low
atmospheric CO2 and fire in promoting the spread of grasslands and savannas,
Global Change Biol., 9, 973–982, https://doi.org/10.1046/j.1365-2486.2003.00577.x, 2003.
Botella, C., Joly, A., Bonnet, P., Monestiez, P., and Munoz, F.: A Deep
Learning Approach to Species Distribution Modelling, in: Multimedia Tools
and Applications for Environmental & Biodiversity Informatics, edited by: Joly, A., Vrochidis, S., Karatzas, K., Karppinen, A., and Bonnet, P., Springer Switzerland, 169–199,
https://doi.org/10.1007/978-3-319-76445-0_10, 2018.
Box, E. O.: Macroclimate and Plant Forms: An Introduction to Predictive
Modeling in Phytogeography, Tasks for Vegetation Science, 1, Springer
Netherlands, https://doi.org/10.1007/978-94-009-8680-0, 1981.
Breshears, D. D., Cobb, N. S., Rich, P. M., Price, K. P., Allen, C. D.,
Balice, R. G., Romme, W. H., Kastens, J. H., Floyd, M. L., Belnap, J.,
Anderson, J. J., Myers, O. B., and Meyer, C. W.: Regional vegetation die-off
in response to global-change-type drought, P. Natl.
Acad. Sci. USA, 102, 15144–15148,
https://doi.org/10.1073/pnas.0505734102, 2005.
Collins, W. J., Bellouin, N., Doutriaux-Boucher, M., Gedney, N., Halloran, P., Hinton, T., Hughes, J., Jones, C. D., Joshi, M., Liddicoat, S., Martin, G., O'Connor, F., Rae, J., Senior, C., Sitch, S., Totterdell, I., Wiltshire, A., and Woodward, S.: Development and evaluation of an Earth-System model – HadGEM2, Geosci. Model Dev., 4, 1051–1075, https://doi.org/10.5194/gmd-4-1051-2011, 2011.
Ehleringer, J. R., Cerling, T. E., and Helliker, B. R.: C4 Photosynthesis,
Atmospheric CO2, and Climate, Oecologia, 112, 285–299, 1997.
Ellis, E. C.: Ecology in an anthropogenic biosphere, Ecol. Monogr.,
85, 287–331, https://doi.org/10.1890/14-2274.1, 2015.
Elsen, P. R., Saxon, E. C., Simmons, B. A., Ward, M., Williams, B. A.,
Grantham, H. S., Kark, S., Levin, N., Perez-Hammerle, K. V., Reside, A. E.,
and Watson, J. E. M.: Accelerated shifts in terrestrial life zones under
rapid climate change, Global Change Biol., 918–935, https://doi.org/10.1111/gcb.15962, 2021.
Emanuel, W. R., Shugart, H. H., and Stevenson, M. P.: Climatic-change and
the broad-scale distribution of terrestrial ecosystem complexes, Clim.
Change, 7, 29–43, 1985.
Gerken, T., Ruddell, B. L., Yu, R., Stoy, P. C., and Drewry, D. T.:Robust
observations of land-to-atmosphere feedbacks using the information flows of
FLUXNET, npj Climate and Atmospheric Science, 2, 37, https://doi.org/10.1038/s41612-019-0094-4,
2019.
Harris, I. C. and Jones, P. D.: CRU TS4.00: Climatic Research Unit (CRU)
Time-Series (TS) version 4.00 of high-resolution gridded data of
month-by-month variation in climate (Jan. 1901–Dec. 2015), Centre for Environmental Data Analysis [data set],
https://doi.org/10.5285/edf8febfdaad48abb2cbaf7d7e846a86, 2017.
Harris, I. C., Jones, P. D., Osborn, T. J., and Lister, D. H.: Updated
high-resolution grids of monthly climatic observations – The CRU TS3.10
dataset, Int. J. Climatol., 34, 623–642, https://doi.org/10.1002/joc.3711, 2014.
Henderson-Sellers, A.: Developing an Interactive Biosphere for Global
Climate Models, Vegetatio, 91, 149–166, https://doi.org/10.1007/bf00036054, 1991.
Hengl, T., Walsh, M. G., Sanderman, J., Wheeler, I., Harrison, S. P., and
Prentice, I. C.: Global mapping of potential natural vegetation: an
assessment of machine learning algorithms for estimating land potential,
Peerj, 6, e5457, https://doi.org/10.7717/peerj.5457, 2018.
Holdridge, L. R.: Determination of world plant formations from simple
climatic data, Science, 105, 367–368, https://doi.org/10.1126/science.105.2727.367, 1947.
IPCC: Climate change 2013: The physical science basis, Contribution of
Working Group I to the fifth assessment report of the Intergovernmental
Panel on Climate Change, edited by: Stocker, T. F., Qin, D., Plattner, G.-K., Tignor, M., Allen, S. K., Boschung, J., Nauels, A., Xia, Y., Bex, V., and Midgley, P. M., Cambridge University Press and New York,
USA, Cambridge, United Kingdom, 2013.
Ise, T. and Oba, Y.: Forecasting Climatic Trends Using Neural Networks: An
Experimental Study Using Global Historical Data, Frontiers in Robotics and
AI, 6, 32, https://doi.org/10.3389/frobt.2019.00032, 2019.
Ise, T. and Oba, Y.: VARENN: graphical representation of periodic data and
application to climate studies, npj Climate and Atmospheric Science, 3, 26,
https://doi.org/10.1038/s41612-020-0129-x, 2020.
Kalnay, E., Kanamitsu, M., Kistler, R., Collins, W., Deaven, D., Gandin, L.,
Iredell, M., Saha, S., White, G., Woollen, J., Zhu, Y., Chelliah, M.,
Ebisuzaki, W., Higgins, W., Janowiak, J., Mo, K. C., Ropelewski, C., Wang,
J., Leetmaa, A., Reynolds, R., Jenne, R., and Joseph, D.: The NCEP/NCAR
40-year reanalysis project, Bulletin of the American Meteorological Society,
77, 437–471, https://doi.org/10.1175/1520-0477(1996)077<0437:TNYRP>2.0.CO;2, 1996.
Korner, C.: Ecological impacts of atmospheric CO2 enrichment on terrestrial
ecosystems, Philos. Tr. R. Soc. S.-A, 361, 2023–2041,
https://doi.org/10.1098/rsta.2003.1241, 2003.
Lavorel, S., Díaz, S., Cornelissen, H., Garnier, E., Harrison, S. P.,
McIntyre, S., Pausas, J. G., Pérez-Harguindeguy, N., and Urcelay, C.:
Plant functional types: are we getting any closer to the Holy Grail?, in:
Terrestrial Ecosystems in a Changing world, edited by: Canadell, J. G.,
Pataki, D. E., and Pitelda, L. F., Springer-Verlag, Heidelberg, 171–186, 2007.
LeCun, Y., Bottou, L., Bengio, Y., and Haffner, P.: Gradient-Based Learning
Applied to Document Recognition, Proc. IEEE, 86, 2278–2324,
https://doi.org/10.1109/5.726791, 1998.
Leinweber, D. J.: Stupid data miner tricks: Overfitting the S&P 500, The Journal of Investing, 16, 15–22, https://doi.org/10.3905/joi.2007.681820, 2007.
Levavasseur, G., Vrac, M., Roche, D. M., and Paillard, D.: Statistical
modelling of a new global potential vegetation distribution, Environ.
Res. Lett., 7, 044019, https://doi.org/10.1088/1748-9326/7/4/044019, 2012.
Levavasseur, G., Vrac, M., Roche, D. M., Paillard, D., and Guiot, J.: An
objective methodology for potential vegetation reconstruction constrained by
climate, Global Planet. Change, 104, 7–22, https://doi.org/10.1016/j.gloplacha.2013.01.008,
2013.
Lugo, A. E., Brown, S. L., Dodson, R., Smith, T. S., and Shugart, H. H.: The
Holdridge life zones of the conterminous United States in relation to
ecosystem mapping, J. Biogeogr., 26, 1025–1038,
https://doi.org/10.1046/j.1365-2699.1999.00329.x, 1999.
Monserud, R. A. and Leemans, R.: Comparing global vegetation maps with the
Kappa-statistic, Ecol. Model., 62, 275–293, https://doi.org/10.1016/0304-3800(92)90003-w,
1992.
Notaro, M., Mauss, A., and Williams, J. W.: Projected vegetation changes for
the American Southwest: combined dynamic modeling and bioclimatic-envelope
approach, Ecol. Appl., 22, 1365–1388, https://doi.org/10.1890/11-1269.1, 2012.
Pearson, R. G. and Dawson, T. P.: Predicting the impacts of climate change
on the distribution of species: are bioclimate envelope models useful?,
Global Ecol. Biogeogr., 12, 361–371, https://doi.org/10.1046/j.1466-822X.2003.00042.x, 2003.
Phillips, S. J., Anderson, R. P., and Schapire, R. E.: Maximum entropy
modeling of species geographic distributions, Ecol. Model., 190, 231–259,
https://doi.org/10.1016/j.ecolmodel.2005.03.026, 2006.
Pitman, A. J.: The evolution of, and revolution in, land surface schemes
designed for climate models, Int. J. Climatol., 23, 479–510, 2003.
Pontius, R. G. and Millones, M.: Death to Kappa: Birth of Quantity
Disagreement and Allocation Disagreement for Accuracy Assessment, Int. J.
Remote Sens., 32, 4407–4429, https://doi.org/10.1080/01431161.2011.552923, 2011.
Prentice, K. C.: Bioclimatic Distribution of Vegetation for
General-Circulation Model Studies, J. Geophys.
Res.-Atmos., 95, 11811–11830, https://doi.org/10.1029/JD095iD08p11811, 1990.
Prentice, I. C. and Leemans, R.: Pattern and process and the dynamics of
forest structure – a simulation approach, J. Ecol., 78, 340–355, 1990.
Prentice, I. C., Cramer, W., Harrison, S. P., Leemans, R., Monserud, R. A.,
and Solomon, A. M.: A global biome model based on plant physiology and
dominance, soil properties and climate, J. Biogeogr., 19, 117–134, 1992.
Pugh, T. A. M., Rademacher, T., Shafer, S. L., Steinkamp, J., Barichivich, J., Beckage, B., Haverd, V., Harper, A., Heinke, J., Nishina, K., Rammig, A., Sato, H., Arneth, A., Hantson, S., Hickler, T., Kautz, M., Quesada, B., Smith, B., and Thonicke, K.: Understanding the uncertainty in global forest carbon turnover, Biogeosciences, 17, 3961–3989, https://doi.org/10.5194/bg-17-3961-2020, 2020.
R-Core-Team: R: A Language and Environment for Statistical Computing, R
Foundation for Statistical Computing [code], https://www.r-project.org/, last access: 14 January 2018.
Ramankutty, N. and Foley, J. A.: ISLSCP II Potential Natural Vegetation
Cover, ORNL DAAC, Oak Ridge, Tennessee, USA [data set], https://doi.org/10.3334/ORNLDAAC/961, 2010.
Rood, R. B.: Let's call it: 30 years of above average temperatures means the
climate has changed:
https://theconversation.com/lets-call-it-30-years-of-above-average-temperatures-means-the-climate-has-changed-36175,
last access: 23 April 2015.
Sato, H.: Sato and Ise (submitted) Open Data [Data set], Zenodo [data set], https://doi.org/10.5281/zenodo.4401233, 2021.
Sato, H. and Ise, T.: Effect of plant dynamic processes on African
vegetation responses to climate change: Analysis using the spatially
explicit individual-based dynamic global vegetation model (SEIB-DGVM), J.
Geophys. Res.-Biogeo., 117, G03017, https://doi.org/10.1029/2012jg002056, 2012.
Spinnler, D., Egh, P., and Korner, C.: Four-year growth dynamics of
beech-spruce model ecosystems under CO2 enrichment on two different forest
soils, Trees-Structure and Function, 16, 423–436, https://doi.org/10.1007/s00468-002-0179-1,
2002.
Thomas, C. D., Cameron, A., Green, R. E., Bakkenes, M., Beaumont, L. J.,
Collingham, Y. C., Erasmus, B. F., De Siqueira, M. F., Grainger, A., Hannah,
L., Hughes, L., Huntley, B., Van Jaarsveld, A. S., Midgley, G. F., Miles,
L., Ortega-Huerta, M. A., Peterson, A. T., Phillips, O. L., and Williams, S.
E.: Extinction risk from climate change, Nature, 427, 145–148,
https://doi.org/10.1038/nature02121, 2004.
Warszawski, L., Frieler, K., Huber, V., Piontek, F., Serdeczny, O., and
Schewe, J.: The Inter-Sectoral Impact Model Intercomparison Project
(ISI-MIP): project framework, P. Natl. Acad. Sci. USA, 111, 3228–3232,
https://doi.org/10.1073/pnas.1312330110, 2014.
Watanabe, S., Hajima, T., Sudo, K., Nagashima, T., Takemura, T., Okajima, H., Nozawa, T., Kawase, H., Abe, M., Yokohata, T., Ise, T., Sato, H., Kato, E., Takata, K., Emori, S., and Kawamiya, M.: MIROC-ESM 2010: model description and basic results of CMIP5-20c3m experiments, Geosci. Model Dev., 4, 845–872, https://doi.org/10.5194/gmd-4-845-2011, 2011.
Willis, K. J. and Whittaker, R. J.: Ecology – Species diversity – Scale
matters, Science, 295, 1245, https://doi.org/10.1126/science.1067335, 2002.
Woodward, F. I.: The Impact of Low-Temperatures in Controlling the
Geographical-Distribution of Plants, Philos. T. Roy. Soc. B, 326, 585–593,
https://doi.org/10.1098/rstb.1990.0033, 1990.
Woodward, F. I. and Williams, B. G.: Climate and Plant-Distribution at
Global and Local Scales, Vegetatio, 69, 189–197, https://doi.org/10.1007/bf00038700, 1987.
Yates, C. J., Elith, J., Latimer, A. M., Le Maitre, D., Midgley, G. F.,
Schurr, F. M., and West, A. G.: Projecting climate change impacts on species
distributions in megadiverse South African Cape and Southwest Australian
Floristic Regions: Opportunities and challenges, Austral Ecol., 35, 374–391,
https://doi.org/10.1111/j.1442-9993.2009.02044.x, 2009.
Short summary
Accurately predicting global coverage of terrestrial biome is one of the earliest ecological concerns, and many empirical schemes have been proposed to characterize their relationship. Here, we demonstrate an accurate and practical method to construct empirical models for operational biome mapping via a convolutional neural network (CNN) approach.
Accurately predicting global coverage of terrestrial biome is one of the earliest ecological...
