Articles | Volume 12, issue 10
Geosci. Model Dev., 12, 4261–4274, 2019
https://doi.org/10.5194/gmd-12-4261-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Geosci. Model Dev., 12, 4261–4274, 2019
https://doi.org/10.5194/gmd-12-4261-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper 10 Oct 2019
Development and technical paper | 10 Oct 2019
Fast domain-aware neural network emulation of a planetary boundary layer parameterization in a numerical weather forecast model
Jiali Wang et al.
Related authors
Jiali Wang, Zhengchun Liu, Ian Foster, Won Chang, Rajkumar Kettimuthu, and V. Rao Kotamarthi
Geosci. Model Dev., 14, 6355–6372, https://doi.org/10.5194/gmd-14-6355-2021, https://doi.org/10.5194/gmd-14-6355-2021, 2021
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Downscaling, the process of generating a higher spatial or time dataset from a coarser observational or model dataset, is a widely used technique. Two common methodologies for performing downscaling are to use either dynamic (physics-based) or statistical (empirical). Here we develop a novel methodology, using a conditional generative adversarial network (CGAN), to perform the downscaling of a model's precipitation forecasts and describe the advantages of this method compared to the others.
Jiali Wang, Cheng Wang, Vishwas Rao, Andrew Orr, Eugene Yan, and Rao Kotamarthi
Geosci. Model Dev., 12, 3523–3539, https://doi.org/10.5194/gmd-12-3523-2019, https://doi.org/10.5194/gmd-12-3523-2019, 2019
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WRF-Hydro needs to be calibrated to optimize its output with respect to observations. However, when applied to a relatively large domain, both WRF-Hydro simulations and calibrations require intensive computing resources and are best performed in parallel. This study ported an independent calibration tool (parameter estimation tool – PEST) to high-performance computing clusters and adapted it to work with WRF-Hydro. The results show significant speedup for model calibration.
Jiali Wang, Zhengchun Liu, Ian Foster, Won Chang, Rajkumar Kettimuthu, and V. Rao Kotamarthi
Geosci. Model Dev., 14, 6355–6372, https://doi.org/10.5194/gmd-14-6355-2021, https://doi.org/10.5194/gmd-14-6355-2021, 2021
Short summary
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Downscaling, the process of generating a higher spatial or time dataset from a coarser observational or model dataset, is a widely used technique. Two common methodologies for performing downscaling are to use either dynamic (physics-based) or statistical (empirical). Here we develop a novel methodology, using a conditional generative adversarial network (CGAN), to perform the downscaling of a model's precipitation forecasts and describe the advantages of this method compared to the others.
Jaydeep Singh, Narendra Singh, Narendra Ojha, Amit Sharma, Andrea Pozzer, Nadimpally Kiran Kumar, Kunjukrishnapillai Rajeev, Sachin S. Gunthe, and V. Rao Kotamarthi
Geosci. Model Dev., 14, 1427–1443, https://doi.org/10.5194/gmd-14-1427-2021, https://doi.org/10.5194/gmd-14-1427-2021, 2021
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Atmospheric models often have limitations in simulating the geographically complex and climatically important central Himalayan region. In this direction, we have performed regional modeling at high resolutions to improve the simulation of meteorology and dynamics through a better representation of the topography. The study has implications for further model applications to investigate the effects of anthropogenic pressure over the Himalaya.
Jiali Wang, Cheng Wang, Vishwas Rao, Andrew Orr, Eugene Yan, and Rao Kotamarthi
Geosci. Model Dev., 12, 3523–3539, https://doi.org/10.5194/gmd-12-3523-2019, https://doi.org/10.5194/gmd-12-3523-2019, 2019
Short summary
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WRF-Hydro needs to be calibrated to optimize its output with respect to observations. However, when applied to a relatively large domain, both WRF-Hydro simulations and calibrations require intensive computing resources and are best performed in parallel. This study ported an independent calibration tool (parameter estimation tool – PEST) to high-performance computing clusters and adapted it to work with WRF-Hydro. The results show significant speedup for model calibration.
Jeffrey D. Mirocha, Matthew J. Churchfield, Domingo Muñoz-Esparza, Raj K. Rai, Yan Feng, Branko Kosović, Sue Ellen Haupt, Barbara Brown, Brandon L. Ennis, Caroline Draxl, Javier Sanz Rodrigo, William J. Shaw, Larry K. Berg, Patrick J. Moriarty, Rodman R. Linn, Veerabhadra R. Kotamarthi, Ramesh Balakrishnan, Joel W. Cline, Michael C. Robinson, and Shreyas Ananthan
Wind Energ. Sci., 3, 589–613, https://doi.org/10.5194/wes-3-589-2018, https://doi.org/10.5194/wes-3-589-2018, 2018
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This paper validates the use of idealized large-eddy simulations with periodic lateral boundary conditions to provide boundary-layer flow quantities of interest for wind energy applications. Sensitivities to model formulation, forcing parameter values, and grid configurations were also examined, both to ascertain the robustness of the technique and to characterize inherent uncertainties, as required for the evaluation of more general wind plant flow simulation approaches under development.
K. K. Shukla, K. Niranjan Kumar, D. V. Phanikumar, R. K. Newsom, V. R. Kotamarthi, T. B. M. J. Ouarda, and M. V. Ratnam
Atmos. Meas. Tech. Discuss., https://doi.org/10.5194/amt-2016-162, https://doi.org/10.5194/amt-2016-162, 2016
Revised manuscript not accepted
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Estimation of Cloud base height was carried out by using various ground based instruments (Doppler Lidar and Ceilometer) and satellite datasets (MODIS) over central Himalayan region for the first time. The present study demonstrates the potential of Doppler Lidar in precise estimation of cloud base height and updraft velocities. More such deployments will be invaluable inputs for regional weather prediction models over complex Himalayan terrains.
Y. Feng, V. R. Kotamarthi, R. Coulter, C. Zhao, and M. Cadeddu
Atmos. Chem. Phys., 16, 247–264, https://doi.org/10.5194/acp-16-247-2016, https://doi.org/10.5194/acp-16-247-2016, 2016
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Aerosol radiative effects are of great importance for climate studies over South Asia, such as the weakening of the South Asian monsoon in the 20th century. This study reveals the altitude dependence of commonly underestimated aerosol radiative properties over this region. It further demonstrates the importance of constraining aerosol vertical distributions and partitioning of scattering vs absorbing aerosols in simulating the subsequent regional dynamical and hydrological responses to aerosols.
B. A. Drewniak, U. Mishra, J. Song, J. Prell, and V. R. Kotamarthi
Biogeosciences, 12, 2119–2129, https://doi.org/10.5194/bg-12-2119-2015, https://doi.org/10.5194/bg-12-2119-2015, 2015
V. S. Manoharan, R. Kotamarthi, Y. Feng, and M. P. Cadeddu
Atmos. Chem. Phys., 14, 1159–1165, https://doi.org/10.5194/acp-14-1159-2014, https://doi.org/10.5194/acp-14-1159-2014, 2014
Y. Feng, V. Ramanathan, and V. R. Kotamarthi
Atmos. Chem. Phys., 13, 8607–8621, https://doi.org/10.5194/acp-13-8607-2013, https://doi.org/10.5194/acp-13-8607-2013, 2013
B. Drewniak, J. Song, J. Prell, V. R. Kotamarthi, and R. Jacob
Geosci. Model Dev., 6, 495–515, https://doi.org/10.5194/gmd-6-495-2013, https://doi.org/10.5194/gmd-6-495-2013, 2013
Related subject area
Earth and space science informatics
Copula-based synthetic data augmentation for machine-learning emulators
Automated geological map deconstruction for 3D model construction using map2loop 1.0 and map2model 1.0
A spatially explicit approach to simulate urban heat mitigation with InVEST (v3.8.0)
Turbidity maximum zone index: A novel model for remote extraction of turbidity maximum zone in different estuaries
S-SOM v1.0: a structural self-organizing map algorithm for weather typing
Using Shapley additive explanations to interpret extreme gradient boosting predictions of grassland degradation in Xilingol, China
Current status on the need for improved accessibility to climate models code
dh2loop 1.0: an open-source python library for automated processing and classification of geological logs
ClimateNet: an expert-labeled open dataset and deep learning architecture for enabling high-precision analyses of extreme weather
A spatiotemporal weighted regression model (STWR v1.0) for analyzing local nonstationarity in space and time
A new end-to-end workflow for the Community Earth System Model (version 2.0) for the Coupled Model Intercomparison Project Phase 6 (CMIP6)
HyLands 1.0: a hybrid landscape evolution model to simulate the impact of landslides and landslide-derived sediment on landscape evolution
Comparative analysis of atmospheric radiative transfer models using the Atmospheric Look-up table Generator (ALG) toolbox (version 2.0)
VISIR-1.b: ocean surface gravity waves and currents for energy-efficient navigation
Topological data analysis and machine learning for recognizing atmospheric river patterns in large climate datasets
Global hydro-climatic biomes identified via multitask learning
A run control framework to streamline profiling, porting, and tuning simulation runs and provenance tracking of geoscientific applications
An improved logistic regression model based on a spatially weighted technique (ILRBSWT v1.0) and its application to mineral prospectivity mapping
High-performance software framework for the calculation of satellite-to-satellite data matchups (MMS version 1.2)
A data model of the Climate and Forecast metadata conventions (CF-1.6) with a software implementation (cf-python v2.1)
Reverse engineering model structures for soil and ecosystem respiration: the potential of gene expression programming
A high-fidelity multiresolution digital elevation model for Earth systems
CPMIP: measurements of real computational performance of Earth system models in CMIP6
Automatic delineation of geomorphological slope units with r.slopeunits v1.0 and their optimization for landslide susceptibility modeling
Community Intercomparison Suite (CIS) v1.4.0: a tool for intercomparing models and observations
Asynchronous communication in spectral-element and discontinuous Galerkin methods for atmospheric dynamics – a case study using the High-Order Methods Modeling Environment (HOMME-homme_dg_branch)
GO2OGS 1.0: a versatile workflow to integrate complex geological information with fault data into numerical simulation models
An open and extensible framework for spatially explicit land use change modelling: the lulcc R package
Plant functional type classification for earth system models: results from the European Space Agency's Land Cover Climate Change Initiative
Non-singular spherical harmonic expressions of geomagnetic vector and gradient tensor fields in the local north-oriented reference frame
An approach to enhance pnetCDF performance in environmental modeling applications
A strategy for GIS-based 3-D slope stability modelling over large areas
An approach to computing direction relations between separated object groups
Improving computational efficiency in large linear inverse problems: an example from carbon dioxide flux estimation
Coupling technologies for Earth System Modelling
Quality assessment concept of the World Data Center for Climate and its application to CMIP5 data
A web service based tool to plan atmospheric research flights
Automated continuous verification for numerical simulation
David Meyer, Thomas Nagler, and Robin J. Hogan
Geosci. Model Dev., 14, 5205–5215, https://doi.org/10.5194/gmd-14-5205-2021, https://doi.org/10.5194/gmd-14-5205-2021, 2021
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A major limitation in training machine-learning emulators is often caused by the lack of data. This paper presents a cheap way to increase the size of training datasets using statistical techniques and thereby improve the performance of machine-learning emulators.
Mark Jessell, Vitaliy Ogarko, Yohan de Rose, Mark Lindsay, Ranee Joshi, Agnieszka Piechocka, Lachlan Grose, Miguel de la Varga, Laurent Ailleres, and Guillaume Pirot
Geosci. Model Dev., 14, 5063–5092, https://doi.org/10.5194/gmd-14-5063-2021, https://doi.org/10.5194/gmd-14-5063-2021, 2021
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We have developed software that allows the user to extract sufficient information from unmodified digital maps and associated datasets that we are able to use to automatically build 3D geological models. By automating the process we are able to remove human bias from the procedure, which makes the workflow reproducible.
Martí Bosch, Maxence Locatelli, Perrine Hamel, Roy P. Remme, Jérôme Chenal, and Stéphane Joost
Geosci. Model Dev., 14, 3521–3537, https://doi.org/10.5194/gmd-14-3521-2021, https://doi.org/10.5194/gmd-14-3521-2021, 2021
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The article presents a novel approach to simulate urban heat mitigation from land use/land cover data based on three biophysical mechanisms: tree shade, evapotranspiration and albedo. An automated procedure is proposed to calibrate the model parameters to best fit temperature observations from monitoring stations. A case study in Lausanne, Switzerland, shows that the approach outperforms regressions based on satellite data and provides valuable insights into design heat mitigation policies.
Chongyang Wang, Li Wang, Danni Wang, Dan Li, Chenghu Zhou, Hao Jiang, Qiong Zheng, Shuisen Chen, Yangxiaoyue Liu, Ji Yang, Xia Zhou, and Yong Li
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-378, https://doi.org/10.5194/gmd-2020-378, 2021
Revised manuscript accepted for GMD
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Turbidity maximum zone (TMZ) is a special phenomenon in estuary throughout the world. However, the method and criteria of extracting TMZ vary greatly. This study proposed an new index-turbidity maximum zone index based on the corresponding relationship of TSS concentration and Chla concentration, which could extract TMZs in different estuaries and seasons better.
Quang-Van Doan, Hiroyuki Kusaka, Takuto Sato, and Fei Chen
Geosci. Model Dev., 14, 2097–2111, https://doi.org/10.5194/gmd-14-2097-2021, https://doi.org/10.5194/gmd-14-2097-2021, 2021
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This study proposes a novel structural self-organizing map (S-SOM) algorithm. The superiority of S-SOM is that it can better recognize the difference (or similarity) among spatial (or temporal) data used for training and thus improve the clustering quality compared to traditional SOM algorithms.
Batunacun, Ralf Wieland, Tobia Lakes, and Claas Nendel
Geosci. Model Dev., 14, 1493–1510, https://doi.org/10.5194/gmd-14-1493-2021, https://doi.org/10.5194/gmd-14-1493-2021, 2021
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Extreme gradient boosting (XGBoost) can provide alternative insights that conventional land-use models are unable to generate. Shapley additive explanations (SHAP) can interpret the results of the purely data-driven approach. XGBoost achieved similar and robust simulation results. SHAP values were useful for analysing the complex relationship between the different drivers of grassland degradation.
Juan A. Añel, Michael García-Rodríguez, and Javier Rodeiro
Geosci. Model Dev., 14, 923–934, https://doi.org/10.5194/gmd-14-923-2021, https://doi.org/10.5194/gmd-14-923-2021, 2021
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This work shows that it continues to be hard, if not impossible, to obtain some of the most used climate models worldwide. We reach this conclusion through a systematic study and encourage all development teams and research centres to make public the models they use to produce scientific results.
Ranee Joshi, Kavitha Madaiah, Mark Jessell, Mark Lindsay, and Guillaume Pirot
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-391, https://doi.org/10.5194/gmd-2020-391, 2021
Revised manuscript accepted for GMD
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We have developed a software that allows the user to extract and standardize drill hole information from legacy datasets and/or different drilling campaigns. It also provides functionality to upscale the lithological information. These functionalities were possible by developing thesauri to identify and group geological terminologies together.
Prabhat, Karthik Kashinath, Mayur Mudigonda, Sol Kim, Lukas Kapp-Schwoerer, Andre Graubner, Ege Karaismailoglu, Leo von Kleist, Thorsten Kurth, Annette Greiner, Ankur Mahesh, Kevin Yang, Colby Lewis, Jiayi Chen, Andrew Lou, Sathyavat Chandran, Ben Toms, Will Chapman, Katherine Dagon, Christine A. Shields, Travis O'Brien, Michael Wehner, and William Collins
Geosci. Model Dev., 14, 107–124, https://doi.org/10.5194/gmd-14-107-2021, https://doi.org/10.5194/gmd-14-107-2021, 2021
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Detecting extreme weather events is a crucial step in understanding how they change due to climate change. Deep learning (DL) is remarkable at pattern recognition; however, it works best only when labeled datasets are available. We create
ClimateNet– an expert-labeled curated dataset – to train a DL model for detecting weather events and predicting changes in extreme precipitation. This work paves the way for DL-based automated, high-fidelity, and highly precise analytics of climate data.
Xiang Que, Xiaogang Ma, Chao Ma, and Qiyu Chen
Geosci. Model Dev., 13, 6149–6164, https://doi.org/10.5194/gmd-13-6149-2020, https://doi.org/10.5194/gmd-13-6149-2020, 2020
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This paper presents a spatiotemporal weighted regression (STWR) model for exploring nonstationary spatiotemporal processes in nature and socioeconomics. A value change rate is introduced in the temporal kernel, which presents significant model fitting and accuracy in both simulated and real-world data. STWR fully incorporates observed data in the past and outperforms geographic temporal weighted regression (GTWR) and geographic weighted regression (GWR) models in several experiments.
Sheri Mickelson, Alice Bertini, Gary Strand, Kevin Paul, Eric Nienhouse, John Dennis, and Mariana Vertenstein
Geosci. Model Dev., 13, 5567–5581, https://doi.org/10.5194/gmd-13-5567-2020, https://doi.org/10.5194/gmd-13-5567-2020, 2020
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Every generation of MIP exercises introduces new layers of complexity and an exponential growth in the amount of data requested. CMIP6 required us to develop a new tool chain and forced us to change our methodologies. The new methods discussed in this paper provided us with an 18 times faster speedup over our existing methods. This allowed us to meet our deadlines and we were able to publish more than half a million data sets on the Earth System Grid Federation (ESGF) for the CMIP6 project.
Benjamin Campforts, Charles M. Shobe, Philippe Steer, Matthias Vanmaercke, Dimitri Lague, and Jean Braun
Geosci. Model Dev., 13, 3863–3886, https://doi.org/10.5194/gmd-13-3863-2020, https://doi.org/10.5194/gmd-13-3863-2020, 2020
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Landslides shape the Earth’s surface and are a dominant source of terrestrial sediment. Rivers, then, act as conveyor belts evacuating landslide-produced sediment. Understanding the interaction among rivers and landslides is important to predict the Earth’s surface response to past and future environmental changes and for mitigating natural hazards. We develop HyLands, a new numerical model that provides a toolbox to explore how landslides and rivers interact over several timescales.
Jorge Vicent, Jochem Verrelst, Neus Sabater, Luis Alonso, Juan Pablo Rivera-Caicedo, Luca Martino, Jordi Muñoz-Marí, and José Moreno
Geosci. Model Dev., 13, 1945–1957, https://doi.org/10.5194/gmd-13-1945-2020, https://doi.org/10.5194/gmd-13-1945-2020, 2020
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The modeling of light propagation through the atmosphere is key to process satellite images and to understand atmospheric processes. However, existing atmospheric models can be complex to use in practical applications. Here we aim at providing a new software tool to facilitate using advanced models and to generate large databases of simulated data. As a test case, we use this tool to analyze differences between several atmospheric models, showing the capabilities of this open-source tool.
Gianandrea Mannarini and Lorenzo Carelli
Geosci. Model Dev., 12, 3449–3480, https://doi.org/10.5194/gmd-12-3449-2019, https://doi.org/10.5194/gmd-12-3449-2019, 2019
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The VISIR ship-routing model is updated in order to deal with ocean currents.
The optimal tracks we computed through VISIR in the Atlantic ocean show great seasonal and regional variability, following a variable influence of surface gravity waves and currents. We assess how these tracks contribute to voyage energy-efficiency gains through a standard indicator (EEOI) of the International Maritime Organization. Also, the new model features are validated against an exact analytical benchmark.
Grzegorz Muszynski, Karthik Kashinath, Vitaliy Kurlin, Michael Wehner, and Prabhat
Geosci. Model Dev., 12, 613–628, https://doi.org/10.5194/gmd-12-613-2019, https://doi.org/10.5194/gmd-12-613-2019, 2019
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We present the automated method for recognizing atmospheric rivers in climate data, i.e., climate model output and reanalysis product. The method is based on topological data analysis and machine learning, both of which are powerful tools that the climate science community often does not use. An advantage of the proposed method is that it is free of selection of subjective threshold conditions on a physical variable. This method is also suitable for rapidly analyzing large amounts of data.
Christina Papagiannopoulou, Diego G. Miralles, Matthias Demuzere, Niko E. C. Verhoest, and Willem Waegeman
Geosci. Model Dev., 11, 4139–4153, https://doi.org/10.5194/gmd-11-4139-2018, https://doi.org/10.5194/gmd-11-4139-2018, 2018
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Common global land cover and climate classifications are based on vegetation–climatic characteristics derived from observational data, ignoring the interaction between the local climate and biome. Here, we model the interplay between vegetation and local climate by discovering spatial relationships among different locations. The resulting global
hydro-climatic biomescorrespond to regions of coherent climate–vegetation interactions that agree well with traditional global land cover maps.
Wendy Sharples, Ilya Zhukov, Markus Geimer, Klaus Goergen, Sebastian Luehrs, Thomas Breuer, Bibi Naz, Ketan Kulkarni, Slavko Brdar, and Stefan Kollet
Geosci. Model Dev., 11, 2875–2895, https://doi.org/10.5194/gmd-11-2875-2018, https://doi.org/10.5194/gmd-11-2875-2018, 2018
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Next-generation geoscientific models are based on complex model implementations and workflows. Next-generation HPC systems require new programming paradigms and code optimization. In order to meet the challenge of running complex simulations on new massively parallel HPC systems, we developed a run control framework that facilitates code portability, code profiling, and provenance tracking to reduce both the duration and the cost of code migration and development, while ensuring reproducibility.
Daojun Zhang, Na Ren, and Xianhui Hou
Geosci. Model Dev., 11, 2525–2539, https://doi.org/10.5194/gmd-11-2525-2018, https://doi.org/10.5194/gmd-11-2525-2018, 2018
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Geographically weighted regression is a widely used method to deal with spatial heterogeneity, which is common in geostatistics. However, most existing software does not support logistic regression and cannot deal with missing data, which exist extensively in mineral prospectivity mapping. This work generalized logistic regression to spatial statistics based on a spatially weighted technique. The new model also supports an anisotropic local window, which is another innovative point.
Thomas Block, Sabine Embacher, Christopher J. Merchant, and Craig Donlon
Geosci. Model Dev., 11, 2419–2427, https://doi.org/10.5194/gmd-11-2419-2018, https://doi.org/10.5194/gmd-11-2419-2018, 2018
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For calibration and validation purposes it is necessary to detect simultaneous data acquisitions from different spaceborne platforms. We present an algorithm and a software system which implements a general approach to resolve this problem. The multisensor matchup system (MMS) can detect simultaneous acquisitions in a large dataset (> 100 TB) and extract data for matching locations for further analysis. The MMS implements a flexible software infrastructure and allows for high parallelization.
David Hassell, Jonathan Gregory, Jon Blower, Bryan N. Lawrence, and Karl E. Taylor
Geosci. Model Dev., 10, 4619–4646, https://doi.org/10.5194/gmd-10-4619-2017, https://doi.org/10.5194/gmd-10-4619-2017, 2017
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We present a formal data model for version 1.6 of the CF (Climate and Forecast) metadata conventions that provide a description of the physical meaning of geoscientific data and their spatial and temporal properties. We describe the CF conventions and how they lead to our CF data model, and compare it other data models for storing data and metadata. We present cf-python version 2.1: a software implementation of the CF data model capable of manipulating any CF-compliant dataset.
Iulia Ilie, Peter Dittrich, Nuno Carvalhais, Martin Jung, Andreas Heinemeyer, Mirco Migliavacca, James I. L. Morison, Sebastian Sippel, Jens-Arne Subke, Matthew Wilkinson, and Miguel D. Mahecha
Geosci. Model Dev., 10, 3519–3545, https://doi.org/10.5194/gmd-10-3519-2017, https://doi.org/10.5194/gmd-10-3519-2017, 2017
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Accurate representation of land-atmosphere carbon fluxes is essential for future climate projections, although some of the responses of CO2 fluxes to climate often remain uncertain. The increase in available data allows for new approaches in their modelling. We automatically developed models for ecosystem and soil carbon respiration using a machine learning approach. When compared with established respiration models, we found that they are better in prediction as well as offering new insights.
Xinqiao Duan, Lin Li, Haihong Zhu, and Shen Ying
Geosci. Model Dev., 10, 239–253, https://doi.org/10.5194/gmd-10-239-2017, https://doi.org/10.5194/gmd-10-239-2017, 2017
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This article proposes an optimized transformation for topographic datasets. The resulting topographic grid exhibits good surface approximation and quasi-uniform high-quality. Both features of the processed topography build a concrete base from which improved endogenous or exogenous parameters can be derived, and makes it suitable for Earth and environmental simulations.
Venkatramani Balaji, Eric Maisonnave, Niki Zadeh, Bryan N. Lawrence, Joachim Biercamp, Uwe Fladrich, Giovanni Aloisio, Rusty Benson, Arnaud Caubel, Jeffrey Durachta, Marie-Alice Foujols, Grenville Lister, Silvia Mocavero, Seth Underwood, and Garrett Wright
Geosci. Model Dev., 10, 19–34, https://doi.org/10.5194/gmd-10-19-2017, https://doi.org/10.5194/gmd-10-19-2017, 2017
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Climate models are among the most computationally expensive scientific applications in the world. We present a set of measures of computational performance that can be used to compare models that are independent of underlying hardware and the model formulation. They are easy to collect and reflect performance actually achieved in practice. We are preparing a systematic effort to collect these metrics for the world's climate models during CMIP6, the next Climate Model Intercomparison Project.
Massimiliano Alvioli, Ivan Marchesini, Paola Reichenbach, Mauro Rossi, Francesca Ardizzone, Federica Fiorucci, and Fausto Guzzetti
Geosci. Model Dev., 9, 3975–3991, https://doi.org/10.5194/gmd-9-3975-2016, https://doi.org/10.5194/gmd-9-3975-2016, 2016
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Slope units are morphological mapping units bounded by drainage and divide lines that maximize within-unit homogeneity and between-unit heterogeneity. We use r.slopeunits, a software for the automatic delination of slope units. We outline an objective procedure to optimize the software input parameters for landslide susceptibility (LS) zonation. Optimization is achieved by maximizing an objective function that simultaneously evaluates terrain aspect segmentation quality and LS model performance.
Duncan Watson-Parris, Nick Schutgens, Nicholas Cook, Zak Kipling, Philip Kershaw, Edward Gryspeerdt, Bryan Lawrence, and Philip Stier
Geosci. Model Dev., 9, 3093–3110, https://doi.org/10.5194/gmd-9-3093-2016, https://doi.org/10.5194/gmd-9-3093-2016, 2016
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In this paper we describe CIS, a new command line tool for the easy visualization, analysis and comparison of a wide variety of gridded and ungridded data sets used in Earth sciences. Users can now use a single tool to not only view plots of satellite, aircraft, station or model data, but also bring them onto the same spatio-temporal sampling. This allows robust, quantitative comparisons to be made easily. CIS is an open-source project and welcomes input from the community.
Benjamin F. Jamroz and Robert Klöfkorn
Geosci. Model Dev., 9, 2881–2892, https://doi.org/10.5194/gmd-9-2881-2016, https://doi.org/10.5194/gmd-9-2881-2016, 2016
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The scalability of computational applications on current and next-generation supercomputers is increasingly limited by the cost of inter-process communication. We implement communication hiding data exchange in the High-Order Methods Modeling Environment (HOMME) for the time integration of the hydrostatic fluid equations using both the spectral-element and discontinuous Galerkin methods. The presented approach produces significant performance and scalability gains in large-scale simulations.
T. Fischer, D. Naumov, S. Sattler, O. Kolditz, and M. Walther
Geosci. Model Dev., 8, 3681–3694, https://doi.org/10.5194/gmd-8-3681-2015, https://doi.org/10.5194/gmd-8-3681-2015, 2015
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We present a workflow to convert geological models into the open-source VTU format for usage in numerical simulation models. Tackling relevant scientific questions or engineering tasks often involves multidisciplinary approaches. Conversion workflows are needed between the diverse tools of the various disciplines. Our approach offers an open-source, platform-independent, robust, and comprehensible method that is potentially useful for a multitude of similar environmental studies.
S. Moulds, W. Buytaert, and A. Mijic
Geosci. Model Dev., 8, 3215–3229, https://doi.org/10.5194/gmd-8-3215-2015, https://doi.org/10.5194/gmd-8-3215-2015, 2015
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The contribution of lulcc is to provide a free and open-source framework for land use change modelling. The software, which is provided as an R package, addresses problems associated with the current paradigm of closed-source, specialised land use change modelling software which disrupt the scientific process. It is an attempt to move the discipline towards open and transparent science and to ensure land use change models are accessible to scientists working across the geosciences.
B. Poulter, N. MacBean, A. Hartley, I. Khlystova, O. Arino, R. Betts, S. Bontemps, M. Boettcher, C. Brockmann, P. Defourny, S. Hagemann, M. Herold, G. Kirches, C. Lamarche, D. Lederer, C. Ottlé, M. Peters, and P. Peylin
Geosci. Model Dev., 8, 2315–2328, https://doi.org/10.5194/gmd-8-2315-2015, https://doi.org/10.5194/gmd-8-2315-2015, 2015
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Land cover is an essential variable in earth system models and determines conditions driving biogeochemical, energy and water exchange between ecosystems and the atmosphere. A methodology is presented for mapping plant functional types used in global vegetation models from a updated land cover classification system and open-source conversion tool, resulting from a consultative process among map producers and modelers engaged in the European Space Agency’s Land Cover Climate Change Initiative.
J. Du, C. Chen, V. Lesur, and L. Wang
Geosci. Model Dev., 8, 1979–1990, https://doi.org/10.5194/gmd-8-1979-2015, https://doi.org/10.5194/gmd-8-1979-2015, 2015
D. C. Wong, C. E. Yang, J. S. Fu, K. Wong, and Y. Gao
Geosci. Model Dev., 8, 1033–1046, https://doi.org/10.5194/gmd-8-1033-2015, https://doi.org/10.5194/gmd-8-1033-2015, 2015
M. Mergili, I. Marchesini, M. Alvioli, M. Metz, B. Schneider-Muntau, M. Rossi, and F. Guzzetti
Geosci. Model Dev., 7, 2969–2982, https://doi.org/10.5194/gmd-7-2969-2014, https://doi.org/10.5194/gmd-7-2969-2014, 2014
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The article deals with strategies to (i) reduce computation time and to (ii) appropriately account for uncertain input parameters when applying an open source GIS sliding surface model to estimate landslide susceptibility for a 90km² study area in central Italy. For (i), the area is split into a large number of tiles, enabling the exploitation of multi-processor computing environments. For (ii), the model is run with various parameter combinations to compute the slope failure probability.
H. Yan, Z. Wang, and J. Li
Geosci. Model Dev., 6, 1591–1599, https://doi.org/10.5194/gmd-6-1591-2013, https://doi.org/10.5194/gmd-6-1591-2013, 2013
V. Yadav and A. M. Michalak
Geosci. Model Dev., 6, 583–590, https://doi.org/10.5194/gmd-6-583-2013, https://doi.org/10.5194/gmd-6-583-2013, 2013
S. Valcke, V. Balaji, A. Craig, C. DeLuca, R. Dunlap, R. W. Ford, R. Jacob, J. Larson, R. O'Kuinghttons, G. D. Riley, and M. Vertenstein
Geosci. Model Dev., 5, 1589–1596, https://doi.org/10.5194/gmd-5-1589-2012, https://doi.org/10.5194/gmd-5-1589-2012, 2012
M. Stockhause, H. Höck, F. Toussaint, and M. Lautenschlager
Geosci. Model Dev., 5, 1023–1032, https://doi.org/10.5194/gmd-5-1023-2012, https://doi.org/10.5194/gmd-5-1023-2012, 2012
M. Rautenhaus, G. Bauer, and A. Dörnbrack
Geosci. Model Dev., 5, 55–71, https://doi.org/10.5194/gmd-5-55-2012, https://doi.org/10.5194/gmd-5-55-2012, 2012
P. E. Farrell, M. D. Piggott, G. J. Gorman, D. A. Ham, C. R. Wilson, and T. M. Bond
Geosci. Model Dev., 4, 435–449, https://doi.org/10.5194/gmd-4-435-2011, https://doi.org/10.5194/gmd-4-435-2011, 2011
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Short summary
Parameterizations are frequently used in models representing physical phenomena and are often the computationally expensive portions of the code. Using model output from simulations performed using a weather model, we train deep neural networks to provide an accurate alternative to a physics-based parameterization. We demonstrate that a domain-aware deep neural network can successfully simulate the entire diurnal cycle of the boundary layer physics and the results are transferable.
Parameterizations are frequently used in models representing physical phenomena and are often...
