Model description paper 07 Mar 2022
Model description paper  07 Mar 2022
Fast infrared radiative transfer calculations using graphics processing units: JURASSICGPU v2.0
 Jülich Supercomputing Centre, Forschungszentrum Jülich, Jülich, Germany
 Jülich Supercomputing Centre, Forschungszentrum Jülich, Jülich, Germany
Correspondence: Paul F. Baumeister (p.baumeister@fzjuelich.de)
Hide author detailsCorrespondence: Paul F. Baumeister (p.baumeister@fzjuelich.de)
Remote sensing observations in the midinfrared spectral region (4–15 µm) play a key role in monitoring the composition of the Earth's atmosphere. Midinfrared spectral measurements from satellite, aircraft, balloons, and groundbased instruments provide information on pressure, temperature, trace gases, aerosols, and clouds. As stateoftheart instruments deliver a vast amount of data on a global scale, their analysis may require advanced methods and highperformance computing capacities for data processing. A large amount of computing time is usually spent on evaluating the radiative transfer equation. Linebyline calculations of infrared radiative transfer are considered to be the most accurate, but they are also the most timeconsuming. Here, we discuss the emissivity growth approximation (EGA), which can accelerate infrared radiative transfer calculations by several orders of magnitude compared with linebyline calculations. As future satellite missions will likely depend on exascale computing systems to process their observational data in due time, we think that the utilization of graphical processing units (GPUs) for the radiative transfer calculations and satellite retrievals is a logical next step in further accelerating and improving the efficiency of data processing. Focusing on the EGA method, we first discuss the implementation of infrared radiative transfer calculations on GPUbased computing systems in detail. Second, we discuss distinct features of our implementation of the EGA method, in particular regarding the memory needs, performance, and scalability, on stateoftheart GPU systems. As we found our implementation to perform about an order of magnitude more energyefficient on GPUaccelerated architectures compared to CPU, we conclude that our approach provides various future opportunities for this highthroughput problem.
Midinfrared radiative transfer, covering the spectral range from 4 to 15 µm of wavelength, is of fundamental importance for various fields of atmospheric research and climate science. Here, in the longwave part of the electromagnetic spectrum, the Earth's energy budget is balanced by thermally radiating back to space the energy received via shortwave solar radiation in the ultraviolet, visible, and nearinfrared spectral regions (Trenberth et al., 2009; Wild et al., 2013). Furthermore, many trace gases have distinct rotationalvibrational emission wavebands in the midinfrared spectral region. Infrared spectral measurements are therefore utilized by many remote sensing instruments to measure atmospheric state parameters, like pressure, temperature, the concentrations of water vapor, ozone, various other trace gases, and cloud and aerosol particles (Thies and Bendix, 2011; Yang et al., 2013; Menzel et al., 2018).
Today, midinfrared radiance measurements provided by satellite instruments are often assimilated directly for global forecasting, climate reanalyses, or air quality monitoring by national and international weather services and research centers. For example, observations by the fleet of Infrared Atmospheric Sounding Interferometer (IASI) instruments (Blumstein et al., 2004) from the European polarorbiting MetOp satellites have become a backbone in numerical weather prediction (Collard and McNally, 2009) and monitoring the atmospheric composition (Clerbaux et al., 2009). New spaceborne missions utilizing the wealth of information from hyperspectral midinfrared observations will be launched beyond 2020, e.g., IASINew Generation (IASING, Crevoisier et al., 2014), the InfraRed Sounder (IRS) on the Meteosat Third Generation (MTG) geostationary satellites, the European Space Agency's new FORUM mission (ESA, 2019), and the Geosynchronous Interferometric Infrared Sounder (GIIRS) aboard the Chinese geostationary weather satellite FY4 series (Yang et al., 2017).
The vast number of remote sensing observations from nextgeneration satellite sensors poses a big data challenge for numerical weather prediction and Earth system science. Fast and accurate radiative transfer models (RTMs) for the Earth's atmosphere are a key component for the analysis of these observations. For example, the Radiative Transfer for TOVS (RTTOV) model (Saunders et al., 1999, 2018) is a fast radiative transfer model for passive visible, infrared, and microwave downwardviewing satellite radiometers, spectrometers, and interferometers. In RTTOV, the layer optical depth for a specific gas and channel is parameterized in terms of predictors such as layer mean temperature, absorber amount, pressure, and viewing angle. The regression approach for the layer optical depths in RTTOV allows for particularly fast evaluation of the radiative transfer equation. Another example for rapid and accurate numerical modeling of band transmittances in radiative transfer is the optimal spectral sampling (OSS) method (Moncet et al., 2008). OSS extends the exponential sum fitting of transmittances technique in that channelaverage radiative transfer is obtained from a weighted sum of monochromatic calculations. OSS is well suited for remote sensing applications and radiance data assimilation in numerical weather prediction, and it is a candidate for operational processing of future satellite missions.
However, many traditional RTMs suffer from large computational costs, typically requiring highperformance computing resources to process multiyear satellite missions. In this study, we focus on the porting and optimization of radiative transfer calculations for the midinfrared spectral region to graphics processing units (GPUs). GPUs bear a high potential for accelerating atmospheric radiative transfer calculations. For instance, Mielikainen et al. (2011) developed a fast GPUbased radiative transfer model for the IASI instruments aboard the European MetOp satellites. The model of Mielikainen et al. (2011) estimates band transmittances for individual IASI channels with a regression approach (McMillin and Fleming, 1976; Fleming and McMillin, 1977; McMillin et al., 1979). It was developed to run on a lowcost personal computer with four NVIDIA Tesla C1060 GPUs with a total of 960 cores, delivering nearly 4 TFlop s^{−1} in terms of theoretical peak performance. On that system, the study found that 3600 full IASI spectra (8461 channels) can be calculated per second. More recently, Mielikainen et al. (2016) examined the feasibility of using GPUs to accelerate the rapid radiative transfer model (RRTM) shortwave module for large numbers of atmospheric profiles. The study of Mielikainen et al. (2016) found that NVIDIA's Tesla K40 GPU card can provide a speedup factor of more than 200 compared to its singlethreaded Fortran counterpart running on an Intel Xeon E52603 CPU.
An alternative approach to perform atmospheric infrared radiative transfer calculations on fieldprogrammable gate arrays (FPGAs) was proposed by Kohlert and Schreier (2011). The starting point for their study involved radiative transfer calculations based on the linebyline approach. In this approach the transmittance is determined by evaluating the temperature and pressuredependent line intensities and line shapes of all relevant molecular absorption lines. However, in the infrared, this may require evaluating hundreds to thousands of absorption lines in a given spectral region. Kohlert and Schreier (2011) ported this most intensive part of the linebyline calculations to FPGAs. Performance tests showed that the computation time for 950 absorption lines on 16 000 spectral grid points was about 0.46 s on their test system. This is several orders of magnitude slower than both the regression and the EGA approach, but it needs to be kept in mind that the linebyline methods generally provides the most accurate results.
In this study, we will discuss porting and performance analyses of radiative transfer calculations based on the emissivity growth approximation (EGA) method as implemented in the JUelich RApid Spectral SImulation Code (JURASSIC) to GPUs. The EGA method as introduced by Weinreb and Neuendorffer (1973), Gordley and Russell (1981), and Marshall et al. (1994) has been successfully applied for the analysis of various satellite experiments over the past 30 years. This includes, for instance, the Cryogenic Limb Array Etalon Spectrometer (CLAES) (Gille et al., 1996), the Cryogenic Infrared Spectrometers and Telescopes for the Atmosphere (CRISTA) (Offermann et al., 1999; Riese et al., 1999), the Halogen Occultation Experiment (HALOE) (Gordley et al., 1996), the High Resolution Dynamics Limb Sounder (HIRDLS) (Francis et al., 2006), the Sounding of the Atmosphere using Broadband Emission Radiometry (SABER) (Mertens et al., 2001; Remsberg et al., 2008), the Stratospheric Aerosol and Gas Experiment (SAGEIII) (Chiou et al., 2003), and the Solar Occultation for Ice Experiment (SOFIE) (Rong et al., 2010) satellite instruments.
The JURASSIC model was first described by Hoffmann et al. (2005) and Hoffmann et al. (2008), discussing the retrieval of chlorofluorocarbon concentrations from Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) observations aboard ESA's Envisat. Hoffmann et al. (2009), Weigel et al. (2010), and Ungermann et al. (2012) applied JURASSIC for trace gas retrievals from infrared limb observations of the Cryogenic Infrared Spectrometers and Telescopes for the Atmosphere – New Frontiers (CRISTANF) aircraft instrument. Hoffmann and Alexander (2009), Meyer and Hoffmann (2014), and Meyer et al. (2018) extended JURASSIC for nadir observations and applied the model for retrievals of stratospheric temperature from Atmospheric InfraRed Sounder (AIRS) observations aboard NASA's Aqua satellite. Hoffmann et al. (2014) and Hoffmann et al. (2016) used the model to analyze AIRS observations of volcanic aerosols. Preusse et al. (2009) and Ungermann et al. (2010a) applied JURASSIC for tomographic retrievals of stratospheric temperature from highresolution limb observations. Ungermann et al. (2010b) and Ungermann et al. (2011) extended JURASSIC for tomographic retrievals of highresolution aircraft observations of the Global Limb Imager of the Atmosphere (GLORIA) instrument. Griessbach et al. (2013, 2014, 2016) extended JURASSIC to allow for simulations of scattering of infrared radiation on aerosol and cloud particles.
The GPUenabled version of the JURASSIC radiative transfer model described here is referred to as JURASSICGPU. The first version of JURASSICGPU was developed and introduced by Baumeister et al. (2017). This paper introduces version 2.0 of the JURASSICGPU model, which has been significantly revised and optimized for more recent GPU cards, namely NVIDIA's A100 TensorCore GPUs as utilized in the Jülich Wizard for European Leadership Science (JUWELS) booster module at the Jülich Supercomputing Centre (JSC), Germany. Whereas version 1.0 of JURASSICGPU was considered to be a proof of concept, we consider version 2.0 of JURASSICGPU described here to be ready for production runs on the JUWELS booster module.
In Sect. 2, we provide a comprehensive description of the algorithms implemented in the JURASSIC radiative transfer model, which has not been presented in the literature so far. In particular, we describe the raytracing algorithm, the differences between monochromatic radiative transfer and the band transmittance approximation, the use of emissivity lookup tables, the emissivity growth approximation (EGA), and the radiance integration along the line of sight. In Sect. 3, we discuss the porting of JURASSIC to GPUs, including a summary of the algorithmic changes and improvements, as well as detailed performance analyses with comparisons between CPU and GPU calculations using the JURASSICGPU model. Section 4 provides the summary, conclusions, and an outlook.
2.1 Definition of atmospheric state and ray tracing
The first step in numerical modeling of infrared radiative transfer is the definition of the atmospheric state. In JURASSIC, the atmosphere is assumed to be homogeneously stratified, and field quantities such as pressure p_{i}, temperature T_{i}, volume mixing ratios q_{j,i} (with trace gas index j), and aerosol extinction coefficients k_{l,i} (with spectral window index l) are specified in the form of vertical profiles on levels $i=\mathrm{1},\mathrm{\dots},n$. Linear interpolation is applied to log (p_{i}), T_{i}, q_{j,i}, and k_{l,i} to determine the atmospheric state between the given height levels.
For coordinate transformations between spherical and Cartesian coordinates, JURASSIC assumes the Earth to be spherical with a fixed mean radius R_{E} of 6367.421 km. The mean radius given here is considered in other radiative transfer models (e.g., Dudhia, 2017). It approximates the local radius of curvature with an accuracy of ± 0.17 %. Tests for the limb geometry showed corresponding differences in simulated radiances in the range of ± 0.2 % for tropospheric and ± 0.1 % for stratospheric tangent heights. The nadir geometry is not affected by applying the fixed mean radius of curvature.
Once the atmospheric state is defined, the ray paths through the atmosphere need be calculated. Here it needs to be considered that refraction in the Earth's atmosphere leads to bending of the ray paths towards the Earth's surface. In the case of the limb sounding geometry, this effect causes real tangent heights in the troposphere to be lowered up to several hundred meters below geometrically calculated tangent heights that have been calculated without refraction being considered.
The positions along a single ray path r(s) are calculated numerically by means of the Eikonal equation (Born and Wolf, 1999),
Here, s is the spatial coordinate along the ray path with the origin s=0 being located at the position of the observing instrument. The refractive index n depends on wavelength λ, pressure p, temperature T, and water vapor partial pressure e (Ciddor, 1996):
In Eq. (2), N_{g} indicates the refractivity of dry air for standard conditions (p_{0} = 1013.25 hPa and T_{0} = 273.15 K):
In the midinfrared spectral region (4–15 µm), the variations with wavelength are typically negligible (deviations in N_{g} with respect to λ are less than 0.1 %). A comparison of the terms in Eq. (2) for different climatological conditions showed that water vapor in this wavelength range also has no substantial influence on refraction (variations in n−1 smaller 0.5 %). For these reasons, JURASSIC applies a simplified equation to calculate the refractivity:
In JURASSIC, the Eikonal equation (Eq. 1) is solved numerically in Cartesian coordinates by means of an iterative scheme described by Hase and Höpfner (1999):
The determination of the ray path starts at the location r_{0} of the instrument. By specifying a second position in the atmosphere, referred to as the view point, the initial tangent vector e_{t,0} is defined. For instance, in the limb geometry, the geometrical tangent point can be selected as the view point, but this is not mandatory. With this rather general approach for ray tracing, any observation geometry (limb, nadir, zenith, or occultation) for instruments located inside or outside the atmosphere can be defined.
The step size ds along the ray path is the most important control parameter regarding the speed and accuracy of the radiative transfer calculations. Over a large range of choices of ds, the mean computation time t for the determination of the ray paths and the subsequent calculation of the radiative transfer is proportional to the reciprocal of the step size, $t\sim \mathrm{1}/\text{d}s$. If the step size is selected too small, the calculation of the radiative transfer takes too much computing time. At larger step sizes, the positions of the points along the ray path may still be determined quite well, but the inhomogeneity of the atmosphere along the ray paths is insufficiently sampled. The extent of these errors depends on the individual atmospheric conditions. In JURASSIC, the default maximum step size along a ray path is 10 km, which is suitable for the limb geometry. To make the method also suitable for the nadir geometry, an additional constraint is imposed, which will reduce individual step sizes to ensure that the vertical component of the steps will not become larger than 500 m by default.
For the limb sounding geometry, it is of particular interest to know the actual real tangent height of the ray paths when taking into account refraction. For this purpose, JURASSIC applies a parabolic interpolation based on the three points of the ray path closest to the Earth's surface to enable a more accurate determination of the tangent point. The error of the tangent heights estimated by the parabolic interpolation method was found to be 1–2 orders of magnitude below the accuracy by which this quantity can typically be measured.
2.2 Monochromatic radiative transfer
The propagation of monochromatic radiance I along a ray path through the atmosphere is calculated from the radiative transfer equation (Chandrasekhar, 1960):
Here, ν denotes the wavenumber, x is the position along the ray path, I(ν,0) is the radiation entering the ray path at the starting point, I(ν,x) is the radiation exiting at the other end, $\mathit{\tau}(\mathit{\nu},{x}^{\prime},x)$ is the transmission along the path from x^{′} to x, and $J(\mathit{\nu},{x}^{\prime})$ is the source function, which describes both the thermal emissions of the emitters along the path and the scattering of radiation into the path. Note that at this point we changed from the local coordinate s used for ray tracing to the local coordinate x for the radiative transfer calculations, which is running in the opposite direction.
In the case of local thermodynamic equilibrium and if scattering of radiation can be neglected, the source function corresponds to the Planck function,
with the Planck constant h, the speed of light c, the Boltzmann constant k_{B}, and temperature T. Deviations from the local thermodynamic equilibrium usually occur only above the stratopause (LópezPuertas and Taylor, 2002). Scattering effects can be neglected in the midinfrared spectral range for clearair conditions, meaning that any significant concentrations of clouds or aerosol particles are absent (Höpfner and Emde, 2005; Griessbach et al., 2013).
The transmissivity of the atmosphere is determined by specific molecular rotational–vibrational wavebands of the trace gases and by a series of continuum processes. For molecular emitters, the transmissivity along the ray path is related to the absorption coefficients κ_{i} and particle densities ρ_{i} according to
where i refers to the trace gas index. The absorption coefficients can be calculated by summation over many spectral lines,
where j is the line index. The parameters for determining the line intensity k_{i,j} and shape function f_{i,j} for a given pressure p and temperature T along the line of sight can be obtained from spectroscopic databases. The HITRAN (High Resolution Transmission) database (Rothman et al., 2009, 2013) is used in the present work. The HITRAN database contains the parameters for millions of spectral lines of more than 40 trace gases as well as directly measured infrared absorption cross sections of more complex molecules (e.g., chlorofluorocarbons).
Some species are significantly affected by line mixing, whereby the interaction or overlap of spectral lines can no longer be described by simple addition (Strow, 1988). Line mixing will not be further discussed here in detail, but it was taken into account for CO_{2} in our calculations. Some emitters cause a continuumlike emission background (Lafferty et al., 1996; Thibault et al., 1997; Mlawer et al., 2012), which we considered for CO_{2}, H_{2}O, N_{2}, and O_{2}. Furthermore, continuum emissions are caused by aerosol and cloud particles. In JURASSIC, the influence of aerosols and clouds on the transmission can be described by direct specification of extinction coefficients k. The extinction coefficients indicate the attenuation of radiance per path length and are linked to the transmission according to
2.3 Band transmittance approximation
Satellite instruments measure radiance spectra at a given spectral resolution. The mean radiance $\stackrel{\mathrm{\u203e}}{I}$ measured by an instrument in a given spectral channel is obtained by spectral integration of the monochromatic radiance spectrum,
where we replaced the transmission τ by the emissivity ε,
This is more suitable for numerical evaluation considering possible loss of accuracy in the representation of τ compared to ε under optically thin conditions. The filter function f(ν) indicates the normalized spectral response with respect to wavenumber ν for the instrument channel being considered. For simplicity, we focus on the case of limb sounding, wherein the origin of the ray paths is in cold space and the source term $I(s\to \mathrm{\infty})\approx \mathrm{0}$ can be omitted.
The most accurate method for calculating the monochromatic emissivity ε is the linebyline evaluation as discussed in Sect. 2.2. However, the linebyline method is computationally the most demanding because, depending on the spectral range, tens of thousands of molecular emission lines may need to be considered. For each line, the line intensity and shape function must be determined depending on pressure and temperature. One option to accelerate the radiative transfer calculations is an approximate solution described by Gordley and Russell (1981) and Marshall et al. (1994). A slightly modified formulation of Rodgers (2000) has been used here:
Instead of detailed monochromatic calculations of the radiance, emissivity, and Planck function, this approximation uses only the spectral averages (indicated by bars) within the spectral range defined by the filter function. Accordingly, the method is referred to as the band transmittance approximation. This method can become computationally very fast if the spectrally averaged emissivities are determined by means of a band model or, as is the case for JURASSIC, by using a set of lookup tables that have been precalculated by means of a linebyline model.
Equations (14) to (16) provide only an approximate solution of the radiation transfer, as the spectral correlations of the emissivity and its derivative along the ray path with the Planck function are neglected. The corresponding error is given by
The error due to neglecting these correlations can be significantly reduced by using more sophisticated methods for determining the spectral mean emissivities along the path, in particular by means of the emissivity growth approximation (EGA) as described in Sect. 2.6.
Another error of the band transmittance approximation results from the fact that the spectral correlations of different emitters are neglected. From Eq. (9) it can be seen that the monochromatic total transmission of several emitters results multiplicatively from their individual transmissions. As the total monochromatic emissivity is calculated from
the spectral mean emissivity is given by
The residual Δε comprises the spectral correlations between all the emitters. For example, for a pair of two emitters, the residual is given by
Such correlation terms are neglected in the JURASSIC model. The associated errors remain small if at least one of the emitters has a relatively constant spectral response. The approximation Δε≈0 is therefore referred to as the continuum approximation. In practice, the errors of the continuum approximation also remain small if a sufficiently large spectral range with many spectral lines is considered. Some studies proposed reducing the uncertainties associated with the continuum approximation by tabulating twogas overlap terms (Marshall et al., 1994) or by introducing correction factors (Francis et al., 2006). These options might be interesting to further improve the accuracy of the approximated radiative transfer calculations, in particular for hyperspectral sounders measuring radiance in narrow spectral channels, but they have not been implemented in JURASSIC so far. It is recommended that the errors associated with the band transmittance and continuum approximations are assessed by means of comparisons with linebyline calculations for any specific case.
2.4 Numerical integration along the line of sight
For the numerical integration of the approximated radiative transfer equation, Eq. (14), the ray path is first divided into segments. The segments are defined by the data points along the ray path as provided by the raytracing algorithm. For each segment, homogeneous atmospheric conditions are assumed. Pressure, temperature, trace gas volume mixing ratios, and aerosol extinction coefficients of each segment are calculated by applying the trapezoidal rule on neighboring data points along the ray path. The spectral mean emissivity and the value of the Planck function of each segment are calculated from segment pressure, temperature, trace gas volume mixing ratios, and aerosol extinction coefficients. The approximated radiative transfer equation, Eq. (14), is then solved by an iterative scheme:
The principle of this scheme is illustrated in Fig. 1. Assuming that the ray path already consists of k segments that produce the radiance I_{k} at the location of the instrument, adding another segment with index k+1, an additional radiance contribution ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k+\mathrm{1}}{\stackrel{\mathrm{\u203e}}{B}}_{k+\mathrm{1}}$ will be incident on the path of k segments. On the way to the instrument, the incident radiation is partially absorbed, whereby the absorption is determined by the total transmission ${\stackrel{\mathrm{\u203e}}{\mathit{\tau}}}_{k}^{\ast}$ of the k segments along the path. By adding the (k+1)th segment, the instrument receives an additional radiance contribution ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k+\mathrm{1}}{\stackrel{\mathrm{\u203e}}{B}}_{k+\mathrm{1}}{\stackrel{\mathrm{\u203e}}{\mathit{\tau}}}_{k}^{\ast}$. The path transmission ${\stackrel{\mathrm{\u203e}}{\mathit{\tau}}}_{k}^{\ast}$ is calculated by multiplying the transmissions ${\stackrel{\mathrm{\u203e}}{\mathit{\tau}}}_{k}=\mathrm{1}{\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k}$ of the individual segments.
It is essential to note that although the numerical integration scheme in Eq. (21) follows the Beer–Lambert law, the spectral mean segment emissivities ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k}$ are determined by means of the EGA method (Sect. 2.6) in our model. The spectral mean emissivities from the EGA method along the path are different from and should not be confused with spectral mean emissivities that follow from treating the individual segments along the ray path as independent homogeneous gas cells.
2.5 Use of emissivity lookup tables
The full advantage in terms of speed of the approximated radiative transfer calculations can be obtained by using lookup tables of spectrally averaged emissivities, which have been prepared for JURASSIC by means of linebyline calculations. In subsequent radiative transfer calculations, the spectral emissivities are determined by means of simple and fast interpolation from the lookup tables. For the calculation of the emissivity lookup tables, any conventional radiative transfer model can be used, which allows calculating the transmission of a homogeneous gas cell depending on pressure p, temperature T, and emitter column density $u=\int q\phantom{\rule{0.125em}{0ex}}p/\left({k}_{\mathrm{B}}T\right)\phantom{\rule{0.125em}{0ex}}\text{d}s$. For the calculations shown here, the MIPAS Reference Forward Model (RFM) (Dudhia, 2017) has been used to generate the emissivity lookup tables. The data need to be tabulated in units of hectopascals, Kelvin, and molecules per square centimeter for p, T, and u, respectively.
The pressure, temperature, and column density values in the emissivity lookup tables need to cover the full range of atmospheric conditions. If the coverage or the sampling of the tables is too low, this could significantly worsen the accuracy of the radiative transfer calculations. We calculated the lookup tables for pressure levels ${p}_{i}={p}_{\mathrm{0}}\mathrm{exp}({z}_{i}/\mathrm{7}\phantom{\rule{0.125em}{0ex}}\mathrm{km})$ with ${z}_{i}=\mathrm{0},\mathrm{2},\mathrm{4},\mathrm{\dots},\mathrm{80}\phantom{\rule{0.125em}{0ex}}\mathrm{km}$ for the pressure level index $i\in [\mathrm{0},\mathrm{40}]$. For each pressure level, a range of temperatures $\mathrm{\Delta}{T}_{j}=\mathrm{70},\mathrm{65},\mathrm{\dots},+\mathrm{70}\phantom{\rule{0.125em}{0ex}}\mathrm{K}$ with the temperature index $j\in [\mathrm{0},\mathrm{28}]$ around the midlatitude climatological mean temperature T_{i} has been selected. For each $({p}_{i},{T}_{i}+\mathrm{\Delta}{T}_{j})$ combination, the column densities ${u}_{i,j,k}$ of the respective emitter are chosen so that the mean emissivity $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{i},{T}_{i,j},{u}_{i,j,k})$ covers the range $[{\mathrm{10}}^{\mathrm{6}},\mathrm{0.9999}]$ with the column density index $k\in [\mathrm{0},\mathrm{299}]$ and that an increase of 12.2 % occurs between the column density grid points.
Since even a single forward calculation for a remote sensing observation may require thousands of interpolations on the emissivity lookup tables, this process must be implemented to be most efficient. Direct index calculation is applied for regularly gridded data (temperature), and the bisection method (Press et al., 2002) is applied for irregularly gridded data (pressure, column density, and emissivities) in order to identify the interpolation nodes. There is potential to also exploit the regular structure of the column density grid in future versions. Interpolation itself is linear in pressure, temperature, and column density. Other interpolation schemes (e.g., secondorder polynomials, cubic splines, single or double logarithmic interpolations) may better represent the actual shape of the emissivity curves with a smaller number of grid points but were rejected after testing due to the significantly increased computational effort for interpolation. For example, the numerical effort to calculate the logarithm or exponential function values in the double logarithmic interpolation is much larger than the numerical effort for linear interpolation, which only requires a single division and a single multiplication. We found that the increased numerical effort of higherorder interpolation methods cannot be compensated for by the fact that fewer grid points are required to provide accurate representation of the emissivity lookup tables.
As an example, Fig. 2 shows the emissivity lookup table for the 15 µm carbon dioxide Q branch at 669 cm^{−1} as used for some radiative transfer calculations in this study. The emissivity curves shown here have been calculated with the RFM linebyline model. The monochromatic absorption spectra provided by the RFM for a fixed pressure p and temperature T have been convoluted with a boxcar spectral response function with a width of 1 cm^{−1} to obtain the spectral mean emissivities. In the weak line limit, for small column densities u, the spectral mean emissivity $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}$ scales linearly with u. In the strong line limit, when the line centers get saturated, absorption is controlled by the line wings and $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}$ scales with the square root of u. For large u, the emissivity curves will completely saturate: $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}\to \mathrm{1}$.
2.6 Emissivity growth approximation
Spectral mean emissivities of an inhomogeneous atmospheric path can be obtained from the lookup tables in different ways. In JURASSIC, the EGA method (Weinreb and Neuendorffer, 1973; Gordley and Russell, 1981) is applied. For simplicity, only the determination of emissivity in the case of a single emitter is described here. In the case of multiple emitters, the determination proceeds analogously, followed by the determination of total emissivity according to Eq. (19). Within the EGA method, the spectral mean emissivity is interpolated from the lookup tables according to the following scheme.

For a given ray path of k segments, to which a segment k+1 is to be added, we first determine an effective column density u^{∗} so that $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{k+\mathrm{1}},{T}_{k+\mathrm{1}},{u}^{\ast})={\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k}^{\ast}$, where ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k}^{\ast}$ denotes the total emissivity of the path of k segments. To determine u^{∗}, an inverse interpolation needs to be performed on the emissivity lookup tables.

The emissivity of the extended path of k+1 segments is determined from ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k+\mathrm{1}}^{\ast}=\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{k+\mathrm{1}},{T}_{k+\mathrm{1}},{u}^{\ast}+{u}_{k+\mathrm{1}})$. Direct interpolation from the emissivity lookup tables is applied in this case. The emissivity of the (k+1)th segment is given by ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k+\mathrm{1}}=\mathrm{1}(\mathrm{1}{\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k+\mathrm{1}}^{\ast})/(\mathrm{1}{\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k}^{\ast})\approx {\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k+\mathrm{1}}^{\ast}{\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{k}^{\ast}$.
The basic assumption of the EGA method is that the total emissivity of k ray path segments can be transferred to the emissivity curve $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{k+\mathrm{1}},{T}_{k+\mathrm{1}},u)$ of the currently considered segment k+1 at pressure p_{k+1} and temperature T_{k+1} of the extended path and that the emissivity growth due to the additional column density u_{k+1} of the segment k+1 can be calculated by following this emissivity curve, starting from the pseudocolumn amount u^{∗}.
The principle of the EGA method is further illustrated in Fig. 3 for the first two segments of a ray path. To determine the emissivity ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{\mathrm{1}}$ of the first segment, we need to follow the emissivity curve $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{\mathrm{1}},{T}_{\mathrm{1}},u)$ so that ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{\mathrm{1}}=\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{\mathrm{1}},{T}_{\mathrm{1}},{u}_{\mathrm{1}})$. If a second segment is added, the real emissivity would follow the emissivity curve ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}^{\ast}({p}_{\mathrm{1}},{T}_{\mathrm{1}},{u}_{\mathrm{1}},{p}_{\mathrm{2}},{T}_{\mathrm{2}},u)$ so that ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{\mathrm{2}}^{\ast}=\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{\mathrm{1}},{T}_{\mathrm{1}},{u}_{\mathrm{1}},{p}_{\mathrm{2}},{T}_{\mathrm{2}},{u}_{\mathrm{2}})$. However, only an emissivity model for homogeneous paths is available from the lookup tables. Therefore, the emissivity curve $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{\mathrm{2}},{T}_{\mathrm{2}},u)$ is used to determine ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{\mathrm{2}}^{\ast}$. The difficulty is to determine the ideal starting point u^{∗} on $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{\mathrm{2}},{T}_{\mathrm{2}},u)$. This starting point is characterized by the fact that the detailed spectral shape of the emissivity $\mathit{\epsilon}({p}_{\mathrm{1}},{T}_{\mathrm{1}},{u}_{\mathrm{1}},\mathit{\nu})$ corresponds to that at $\mathit{\epsilon}({p}_{\mathrm{2}},{T}_{\mathrm{2}},{u}^{\ast},\mathit{\nu})$. The solution ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{\mathrm{2}}^{\ast}=\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{\mathrm{2}},{T}_{\mathrm{2}},{u}^{\ast}+{u}_{\mathrm{2}})$ would then be exact. However, such a point usually does not exist. Within the framework of the EGA method, one assumes that the best starting point on $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{\mathrm{2}},{T}_{\mathrm{2}},u)$ is the one at which at least the spectrally averaged emissivity is the same; i.e., u^{∗} is determined so that $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}({p}_{\mathrm{2}},{T}_{\mathrm{2}},{u}^{\ast})={\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{\mathrm{1}}$.
3.1 Implementation details of JURASSICGPU
3.1.1 Usage of the CUDA programming model
JURASSIC is written in the C programming language and makes use of only a few library dependencies. In particular, the GNU Scientific Library (GSL) is used for linear algebra in the retrieval code provided along with JURASSIC. In order to connect the GPU implementation of JURASSIC seamlessly to the reference implementation (Hoffmann, 2015), we restructured only those parts of JURASSIC that perform intensive compute operations, i.e., the EGA method and also the ray tracer. While the EGA calculations are typically the most computationally intensive, the raytracing kernel has also been ported to the GPU, mostly for reasons of data locality, so the ray path data can reside in GPU memory and do not require CPUtoGPU data transfers before starting the radiative transport calculation along the ray paths.
For the GPU programming, we selected the Compute Unified Device Architecture (CUDA) programming model, which exclusively addresses NVIDIA graphical processors. CUDA is a dialect of C/C++ and the user has to write compute kernels in a specific CUDA syntax.
__global__ void clear_array_kernel(double a[]) { a[blockIdx.x*blockDim.x + threadIdx.x] = 0; } __host__ int clear_array(double a[], size_t n) { <<< n/64, 64 >>> clear_array_kernel(a); return n%64; }
This minimal example already shows some of the most important features of the CUDA programming model. There are kernels with the attribute
__global__
which can be executed on the GPU. Kernels need to be launched by regular CPU functions, which we call driver functions. All
regular CPU functions inside the source files translated with the host C compiler need to be marked as __host__
. The CUDA kernel launch
consists of two parts. The left part between triple chevrons (<<< … >>>
) indicates the launch configuration; i.e., we specify the number
of CUDA blocks and the number of CUDA threads per block (here 64). The terminology might be misleading as CUDA threads are not like CPU threads (POSIX
threads or OpenMP threads). Rather, one should think about CUDA threads as lanes of a vector unit. We will use the term lanes here instead of CUDA
threads. CUDA blocks, however, exhibit some similarity to CPU threads.
Inside our example CUDA kernel clear_array_kernel
, we access inbuilt variables: threadIdx.x
and blockIdx.x
are the lane
and block index, respectively, and blockDim.x
will have the value 64 here due to the selected launch configuration of 64 lanes per block.
The example so far assigns zero to the values of array a[]
but behaves only correctly if n
is a multiple of 64. In order to produce
code that performs correctly for any launch configuration and without checks for corner cases that are too complicated, we make use of a technique called grid
stride loops (Harris, 2013).
__global__ void clear_array_kernel(double a[], int n) { for(int i = blockIdx.x*blockDim.x + threadIdx.x; i < n; i += gridDim.x*blockDim.x) a[i] = 0; }
The inbuilt variable gridDim.x
will assume the value n/64
. Now any launch configuration <<< g, b >>>
with
g
≥1 and 1≤ b
≤1024 will lead to correct execution. This is particularly helpful when tuning for performance
as we can freely vary the number of lanes per block b
and also the number of blocks g
.
3.1.2 CPU versus GPU memory
Graphical processors are equipped with their own memory, typically based on a slightly different memory technology compared to standard CPU memory
(SDRAM versus DRAM). Therefore, pointers to be dereferenced in a CUDA kernel need to reside in GPU memory, i.e., need to be allocated with
cudaMalloc
. The returned allocations reside in GPU memory and can only be accessed by the GPU. Before we can use the arrays on the CPU
(e.g., for output) we have to manually copy–transfer these GPU memory regions into CPU memory of the same size. Likewise, data may have to be copied
from CPU memory to GPU memory before they can be used on the GPU. These data transfers between CPU and GPU memory are typically costly and should be
avoided as far as possible.
In the unified memory model (supported by all modern NVIDIA GPUs) cudaMallocManaged
returns allocations when memory transfers are hidden
from the user; i.e., the coding complexity of having a CPU pointer and a GPU pointer as well as keeping the array content in sync is taken care of by the
hardware. Our GPU implementation of JURASSIC uses unified memory for the lookup tables. For the observation geometry and atmosphere data (inputs) as well as
the resulting radiances (results), JURASSIC makes use of GPUonly memory and performs explicit memory transfers to and from GPU memory.
3.1.3 Single source code policy
For production codes, one might accept the extra burden of maintaining a separate GPU version of an application code. However, despite being considered ready for production, JURASSIC remains a research code under continuous development; i.e., it should be possible to add new developments without overly large programming efforts at any time. Therefore, a single source policy has been pursued as much as possible. Having a single source also provides the practical advantage to compile and link a CPU and a GPU version inside the same executable.
Retaining a single source is a driving force for directivesbased GPU programming models such as OpenACC, wherein CPU codes are converted to GPU codes by code annotations, which is comparable to OpenMP pragmas for CPUs. On the one hand, in order to harvest the best performance and to acquire maximum control over the hardware, CUDA kernels are considered mandatory. On the other hand, the coding complexity outlined above (kernels, drivers, launch parameters, grid stride loops, GPU pointers, memory transfers) should remain hidden to some extent for some developers of the code, which may be domain scientists or students that are not familiar with all peculiarities of GPU programming. This poses a challenge for enforcing a single source policy.
For these reasons, the GPUenabled version of JURASSIC is structured as follows: all functionality related to ray tracing and radiative transfer that
should run on both CPU and GPU is defined in inline functions in a common header file jr_common.h
. This header is included into the two
architecturespecific implementations CPUdrivers.c
and GPUdrivers.cu
. The implementation CPUdrivers.c
contains the forward
model to compute the radiative transfer based on the EGA method using OpenMP parallelism over ray paths and instrument channels. The implementation
GPUdrivers.cu
is a CUDA source file with CUDA kernels and corresponding drivers, which offers the same functionality as its CPU
counterpart. Inside the CUDA kernels, the same functions are defined in jr_common.h
as inside the loop bodies of CPUdrivers.c
; see
Fig. 4. With this approach, the user can decide at runtime whether to run the CPU or the GPU version of the model.
3.1.4 Code restructuring for improved performance
Using profileguided analysis of execution runs of the JURASSIC reference code (Hoffmann, 2015), we identified the most critical component in radiative transfer calculations using the EGA method to be the forward and backward interpolation between column densities u and mean emissivities $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}$ of the lookup tables. The emissivities $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}$ are functions of pressure p and temperature T, and in particular they are monotonically rising functions of u. Furthermore, $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}$ and u carry an index for the specific trace gas and an index g for the detector channel referred to by its wavenumber ν. Therefore, interpolations on the emissivity lookup tables are conducted on fivedimensional arrays of $\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}$ and u.
The lookup tables are densely sampled so that linear interpolation for all continuous quantities (p, T, u) can be assumed to be sufficiently accurate. Column densities u are sampled on a logarithmic grid with increments of 12.2 %. The starting value of the grid can differ depending on g, ν, p, and T. The emissivity curves for individual (p,T) combinations feature up to 300 data points; i.e., a range of up to 15 orders of magnitude in u is covered. However, for a given u in order to interpolate between ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{i}=\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}\left({u}_{i}\right)$ and ${\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}}_{i+\mathrm{1}}=\stackrel{\mathrm{\u203e}}{\mathit{\epsilon}}\left({u}_{i+\mathrm{1}}\right)$ the index i needs to be found such that ${u}_{i}\le u<{u}_{i+\mathrm{1}}$ on the logarithmic grid. A classical bisection algorithm as implemented in the reference code of JURASSIC converges fast but leads to a quasirandom memory access pattern in the lookup tables.
Depending on the number of emitters and detector channels, the total memory consumption of the lookup tables can become quite large. A typical configuration of sampling points leads to 3 MiB per gas and per instrument channel. Random memory access onto these memory sizes usually leads to an inefficient usage of the memory caches attached to the CPUs and GPUs. The idea of caches is to reduce the memory access latency and potentially also the required bandwidth towards the main memory. A cache miss leads to a request for a cache line from the main memory, typically related to an access latency at least an order of magnitude larger than a read from cache. If the memory access pattern of an application shows a predominant data access structure, a large step towards computing and energy efficiency is to restructure the data layout such that cache misses are avoided as much as possible. Throughputoriented architectures like GPUs work optimally when sufficiently many independent tasks are kept in flight such that the device memory access latencies can be hidden behind computations on different tasks.
Random access to memory for reading a single float
variable (4 bytes) may become particularly inefficient as entire cache
lines (32 bytes) are always fetched from memory, i.e., only 12.5 % of the available memory bandwidth is actually exploited. For exploiting the available
bandwidth towards the memory optimally, we aimed to find a data layout that maximizes the use of a cache line.
The current JURASSIC reference implementation (Hoffmann, 2015) uses the following array ordering to store the emissivity loopup tables:
On GPUs, branch divergence is an important source of inefficiency. Therefore, the mapping of parallel tasks onto lanes (CUDA threads) and CUDA blocks has been chosen to avoid divergent execution as much as possible. For the computation of the EGA kernels, lanes are mapped to the different detector channels ν, and blocks are used to expose the parallelism over ray paths. Branch divergence may happen here only if a ray path gets optically thick in a given channel. However, this can be treated by masking the update to the transmittance τ on the corresponding lane.
Furthermore, coalesced loads are critical to exploit the available GPU memory bandwidth. Although it seems counterintuitive, the GPU version of JURASSIC therefore features a restructured data layout for the loopup tables:
Compared to the data layout in Eq. (24), the index inu
has moved to the right. For each memory access to the
lookup tables, we find that the four indices ig
, ip
, iT
, and often also iu
are the same. Hence, vectorization over channels ν
leads to a majority of coalesced loads and the best possible exploitation of the GPU memory bandwidth. Optimal performance has been found running with
at least 32 channels (or even a multiple of that), as in this case entire CUDA warps (groups of 32 lanes) launch four coalesced load requests of
32 bytes each (Baumeister et al., 2017).
3.1.5 GPU register tuning
On CPUs, simultaneous multithreading, also known as hyperthreading, is achieved by assigning more than one thread to a core and by timesharing of the execution time. This means that CPU threads can execute for awhile until the operating system tells them to halt. Then, the thread context is stored and the context of the next thread to execute is loaded. GPUs can operate in the same manner; however, storing and loading of the context can become a bottleneck as this means extra memory accesses. The best operating mode for GPUs is reached if the entire state of all blocks in flight can be kept inside the register file. Only then, context switches come at no extra cost. Consequently, GPU registers are a limited resource which we should monitor when tuning performance critical kernels. The CUDA compiler can report the register usage and spill loads or stores of each CUDA kernel.
Figure 5 shows the data flow between kernels and subkernels for the complete forward model. Relevant data volumes are given
as labels to the connector arrows in Fig. 5. As GPU kernels should not become too large in terms of register usage, an
important implementation architecture choice is how to group subkernels into kernels. If two subkernels are grouped into the same GPU kernel, the
data flow does not lead to stores to and consequent loads from GPU memory. This saves additional memory bandwidth and increases the potential maximum
performance. The difficulty, however, is to balance between large kernels which require many registers and hence reduce the number of blocks in
flight and small kernels, which may cause additional memory traffic. We found that grouping the kernels EGA
, Planck
,
continua
, and integ
into a single, relatively large fusion_kernel
delivers the best performance for nadir simulations
(Baumeister et al., 2017). The fusion_kernel
approach avoids additional memory traffic indicated by six connector arrows with 40 KiB per
ray each.
In the reference code of the forward model, the computation of continuum emissions requires many registers. The exact number of registers depends on
the combination of trace gases yielding continuum emissions in the given spectral range. A gas continuum is considered relevant if any of the detector
channels of the radiative transfer calculations fall into their predefined wavenumber window. JURASSIC implements the CO_{2}, H_{2}O,
N_{2}, and O_{2} continua; hence, there are 16 combinations of continuum emissions to be considered. In the spirit of multiversioning, we
use the Cpreprocessor to generate all 16 combinations of the continua
function at compile time and jump to the optimal version with a
switch
statement at runtime.
Table 1 shows the GPU register requirements of fusion_kernel
. The maximal occupancy, i.e., the number of blocks
or warps in flight, is limited by the total number of registers of the GPU's streaming multiprocessor (SM) divided by the register count of the kernel
to execute. For example, the NVIDIA Tesla V100 GPU features 65 536 registers in each of its 80 SMs (NVIDIA, 2017). This defines a minimal
degree of parallelism of 1760–2160 ray paths (with 32 channels) in order to keep the GPU busy. Smaller register counts allow for a larger degree of
parallelism and, potentially, a higher throughput.
3.2 Verification and performance analysis
3.2.1 Description of test case and environment
In the following sections, we discuss the verification and performance analysis of the JURASSICGPU code. All performance results reported here were obtained on the Jülich Wizard for European Leadership Science (JUWELS) supercomputing system at the Jülich Supercomputing Centre, Germany (Krause, 2019). The JUWELS GPU nodes comprise a Dual Intel Xeon Gold 6148 CPU and four NVIDIA Tesla V100 GPUs (NVIDIA, 2017), one of which was used for benchmarking. A PCIe gen3 16× interface connects CPUs and GPUs. The CUDA runtime and compiler version are 10.1.105, while GCC version 8.3.0 was employed to compile the CPU code.
In the study of Baumeister et al. (2017), we analyzed the performance of the GPU implementation of JURASSIC for nadir applications. Here, we selected the limb geometry as a test case (see Fig. 6). While in the nadir geometry ray paths typically comprise 160 path segments (assuming an upper height of the atmosphere at 80 km and default vertical sampling step size of 500 m), the limb geometry produces up to about 400 segments per ray path. Ray paths passing only through the stratosphere feature fewer segments than ray paths passing by close to the surface. Tropospheric ray paths are also subject to stronger refractive effects, bending them towards the Earth's surface. In the limb test case considered here, the number of segments along the ray paths varies between 122 and 393.
In this assessment, we aim for rather extensive coverage of the midinfrared spectral range. By means of linebyline calculations with RFM, we prepared emissivity lookup tables for 27 trace gases with 1 cm^{−1} spectral resolution for the range from 650 to 2450 cm^{−1}. Vertical profiles of pressure, temperature, and trace gas volume mixing ratios for midlatitude atmospheric conditions were obtained from the climatological data set of Remedios et al. (2007).
In order to verify the model, we continuously compared GPU and CPU calculations during the development and optimization of JURASSICGPU. For the test case presented in this study, it was found that the GPU and CPU calculations do not provide bitidentical results. However, the relative differences between the calculated radiances from the GPU and CPU code remain very small ($\le {\mathrm{10}}^{\mathrm{5}}$), which is orders of magnitudes smaller than typical accuracies of the EGA method itself (∼ 1 %) and considered suitable for most practical applications.
3.2.2 Performance signatures of emissivity lookup tables
It needs to be considered that many trace gases cover only limited wavebands throughout the midinfrared spectrum (Fig. 7). In terms of the EGA calculations, typically between 7 and 18 lookup tables can be considered to be active throughout the spectrum (Fig. 8). The effect of the continuum emissions of CO_{2} and H_{2}O has been considered over the entire spectral range. The N_{2} continuum was considered from 2120 to 2605 cm^{−1}, and the O_{2} continuum was considered from 1360 to 1805 cm^{−1}.
Figure 9 shows that the GPU runtime scales linearly with the number of active lookup tables per channel. Here, we compare the GPU runtime to the number of active lookup tables averaged over a set of 32 channels that were processed together. For reference, we also included the actual number of active lookup tables for each single wavenumber as shown in Fig. 8. One can see the effect of the rolling average over 32 channels is smoothing out the steps.
In order to quantify the correlation between the GPU runtime and the average number of active lookup tables, the data are presented as a scatter plot in Fig. 10. The scatter plot demonstrates mostly linear scaling between the number of active lookup tables and the GPU runtime. A linear fit provides a quantitative measure of the GPU runtime with respect to the number of tables. The best fit to the data had a slope of 12.5 $\mathrm{\mu}\mathrm{s}\phantom{\rule{0.25em}{0ex}}{\mathrm{table}}^{\mathrm{1}}\phantom{\rule{0.25em}{0ex}}{\mathrm{ray}}^{\mathrm{1}}$ and an offset of 16.7 µs ray^{−1}. While we would have expected the calculations to scale linearly with the number of active channels or trace gases considered in the EGA method, the offset can be largely attributed to the raytracing calculation, which needs to be conducted once per ray independent of the number of channels that are being considered.
3.2.3 The effect of cold caches
The average number of active lookup tables in the wavenumber interval from 650 to 2450 cm^{−1} is 12.77. A subset of 32 channels from 1122 to 1153 cm^{−1} matches this mean value well (with $\mathrm{409}/\mathrm{32}$ = 12.78) and has therefore been selected for a more thorough scaling analysis. The performance model generated in the previous section (16.4 µs + 11.3 µs per lookup table) predicts a GPU runtime of approximately 161 µs ray^{−1} or a corresponding performance of 6.2 × 10^{3} rays s^{−1} for this case, while the actual measured timing of 2.5 s for 16 896 ray paths accounts for a performance of 6.76 × 10^{3} rays s^{−1}. This deviation is within the variance of the simple linear model.
As pointed out in Sect. 3.1.2, the emissivity lookup tables are allocated in the unified memory of the CPU and the GPU. The tables are first filled in by the CPU loading the corresponding data files from disk. Subsequently, the data are transferred from CPU to GPU memory when the lookup tables are accessed on the GPU. The GPU memory can be considered to be some sort of cache in this context. For the GPU runtime measurements of the previous section, the actual computations have been repeated many times. The first iteration was considered a warmup cycle, and its timings are discarded. The performance model is therefore based on warm cache data only; i.e., there was already a copy of the EGA lookup tables present in the GPU memory.
In order to understand the effect of cold caches, we repeated the measurements, but we were looking particularly at the first timing result. With cold caches, the slope of the linear model for the runtime increased from 11.3 to 12.5 µs per table and per ray, which predicts a GPU runtime of approximately 176 µs ray^{−1} or correspondingly 5.7 × 10^{3} rays s^{−1} for our test case. The offset only increased from 16.4 to 16.7 µs ray^{−1}. The actual measured timing of 2.74 s accounts for a performance of 6.17 × 10^{3} rays s^{−1}. This is a notable reduction of the performance from warm to cold caches.
From this, we can deduce the runtime increase due to memory page misses in the GPU memory. Table 2 shows that the model and direct measurements agree well in estimating an increased runtime of 0.25 s due to the cold cache. This increase in time, however, is much larger than the bare data transfer time of about 75 ms, which results from data volume of 1.2 GiB of the tables divided by the nominal bandwidth of 16 GiB s^{−1} of the CPU–GPU interconnect. Besides the bare transfer time, the increase in runtime is largely due to contributions from latencies, as every page fault is treated one by one. In the best case, some improvements due to overlapping of data accesses and computations on different blocks might be expected, which is a major strength of highthroughput devices like GPUs. However, this effect does not seem to come into play in this test case.
3.2.4 Workload scaling
In this section, we investigate the scaling behavior of the GPU runtime with respect to the number of ray paths and the number of instrument channels. The GPU runtime results regarding the scaling with respect to the number of ray paths in Fig. 11 show two regimes: in the regime of small workloads (fewer than 1000 ray paths), overhead times of the order of 0.1 to 0.2 s become visible. For 32 channels and numbers of ray paths larger than 2000, which represents the minimum amount of ray parallelism (see Sect. 3.1.5), a linear behavior with a performance of up to 7.33 × 10^{3} rays s^{−1} can be found. This is even about 8 % higher than the best performance found earlier for 17 × 10^{3} rays. We have to mention here that we reduced the maximum size of emissivity lookup tables for this scaling analysis from 27 to 13 to host only the active gases.
Figure 11b shows the scaling behavior with respect to the number of instrument channels. When using fewer than 32 channels, we can observe that the runtime is much higher than what we could expect from a linear function. This is strongly related to the GPU warp size of 32 lanes (also known as CUDA threads). For block sizes smaller than 32, branch divergence leads to inefficiencies and hence longer runtimes.
During earlier tuning efforts of the JURASSIC GPU version, much investigation was spent on radiative transfer calculations for the 4.3 and 15 µm wavebands of CO_{2} and the nadir observation geometry (Baumeister et al., 2017). In that case, only lookup tables for CO_{2} have been considered. In the nadir geometry, the total number of segments along the ray path is 160 for all ray paths, and the best performance reported was 133 × 10^{3} rays s^{−1} running on one NVIDIA Tesla P100 GPU.
The performance data for the limb case shown in Fig. 11 nominally translate into a maximum performance of 7.33 × 10^{3} rays s^{−1}. However, the limb ray paths are longer (253.2 versus 160 segments) and we work with 13 rather than a single lookup table. Accounting for that, the performance in terms of ray paths per second for the limb case on the V100 GPUs is about 11 % higher than that of the nadir case on the P100 GPUs. The technology update from P100 to V100 increased the nominal GPU memory bandwidth by 25 % (NVIDIA, 2016, 2017), but the nadir case using only CO_{2} tables may also benefit more strongly from caches compared to the limb case in which the 13 different lookup tables account for a total size of 1.2 GiB.
3.2.5 CPU versus GPU performance comparison
The code restructuring described above and by Baumeister et al. (2017) has been focused on GPU performance; therefore, direct comparisons between tuned GPU and untuned CPU versions may be taken with a caveat. Nevertheless, we repeated the scaling analysis of the previous section for the CPU and for the reference version (Hoffmann, 2015) (abbreviated as REF) in order to find a rough figure of merit.
The best performance results for the CPU version are achieved when running large workloads with 32 channels on two OpenMP threads per core. We find that the runtime is close to proportional to the number of ray paths over the entire range from 64 to 65 k ray paths; see Fig. 12. Overhead times are negligible here. The right panel indicates that running with 32 channels takes about twice the time of 16 channels. However, when we come to smaller channel numbers, overheads and inefficiencies become visible. In terms of overhead the channelindependent ray tracing needs to be mentioned here. Furthermore, inefficiencies in the EGA method appear as we cannot exploit the full width of the CPU vectorization (SIMD) with one or two channels.
The benchmarks of the reference version (REF) have been restricted to workloads of up to 4096 ray paths, as the code has not been optimized to handle larger workloads. However, Fig. 13 reflects its performance signature well enough. The runtime is proportional to the number of ray paths over the full range; i.e., no relevant overhead times are visible in the left panel. The right panel shows that the configurations with 16 and 32 channels take more than 2× and 4× the runtime, respectively; see Fig. 13b. The black dot indicates the most efficient use case with eight channels running on one OpenMP thread per core. One would choose these settings for a production calculation. The linear fit with 3.765 ms ray^{−1} also refers to the case of eight channels, so it must be scaled by $\mathrm{32}/\mathrm{8}$ before comparing to CPU version results.
We extracted the best performance from GPU, CPU, and REF implementations and summarized them in Table 3. In order to serve for a direct comparison, the values for time to solution and energy to solution have been normalized to the same workload of 4 × 65 k limb ray paths on 32 channels. As reported by peers about other code acceleration projects with GPUs, we can observe that the CPU version benefits from the rewriting efforts: comparing the runtime of the CPU to that of the reference implementation shows a 14× faster time to solution and, equivalently, as both run on the CPU only, a 14× better energy to solution assuming that the CPU power intake is in firstorder approximation independent of the workload.
A direct comparison of GPU runtimes to CPU runtimes is in most cases hardly meaningful as we need a CPU to operate a GPU. Therefore, we tried to estimate the power consumption of the compute node with and without GPUs active. We assume a thermal design power (TDP) envelope of 300 W for each of the four V100 GPUs (NVIDIA, 2017) and a TDP of 150 W for each socket of the Intel Xeon Gold 6148 CPU. Furthermore, the compute nodes are equipped with 192 GiB of CPU memory such that we estimate the dual node to take 500 W without GPUs in operation and about 1.7 kW running a GPU accelerated application. Although these considerations do not include power for cooling, these energytosolution estimates allow forming meaningful energy efficiency ratios.
From Table 3, it becomes obvious that the GPU version is about 9× more energyefficient than its CPU counterpart. Comparing to the reference version, the GPU version exhibits a more than 130× better energy efficiency. However, this should be taken with a caveat as no particular CPU tuning has been undertaken. Nevertheless, we can roughly attribute the improvement by a factor of 14 to the rewriting and the factor of 9 to the GPU acceleration.
Highperformance computing using graphics processing units (GPUs) is an essential tool for advancing computational science. Numerical modeling of infrared radiative transfer on GPUs can achieve considerably higher throughput compared to standard CPUs. In this study, we found that this also applies for the case of the emissivity growth approximation (EGA), which allows us to effectively estimate bandaveraged radiances and transmittances for a given state of the atmosphere, avoiding expensive linebyline calculations.
In order to enable the GPU acceleration, including ray tracing and the EGA method, a major redesign of the radiative transfer model JURASSIC has been necessary. Besides the goal of maximizing the GPU's throughput, the code base has been transformed to offer both a GPU and a CPU version of the forward model; the number of duplicate source code lines has been minimized, facilitating better code maintenance.
The GPU version of JURASSIC has been tuned to deliver outstanding performance for the nadir geometry in earlier work. In the nadir case, only CO_{2} was considered to be an emitter. In this work, we focused on performance analyses for the limb geometry. Here, up to 18 gases contributed to the simulated radiance in a given midinfrared spectral region, leading to a much larger number of emissivity lookup tables that needs to be considered in the EGA method. Our scaling tests showed that the GPU runtime is composed of rather constant offset due to ray tracing and a linearly scaling contribution due to the number of lookup tables being considered in the EGA calculations.
In order to find a figure of merit to evaluate the application porting and restructuring efforts for JURASSIC, we tried to assess the performance ratio of GPUs over CPUs. In terms of energy to solution, we found the GPU version to be about 9 times more energy efficient than its CPU counterpart. The CPU version, in turn, is about 14 times faster than the reference implementation from which the porting project started.
Although there are further ideas for performance tuning and code optimization, including the idea to implement analytic Jacobians for data assimilation and retrieval applications, the given achievements in terms of improved CPU performance and utilization of GPUs are considered an important step forward in order to prepare the JURASSIC radiative transfer model for largescale data processing of upcoming satellite instruments.
The most recent version of the JURASSICGPU model is available at https://github.com/slcsjsc/jurassicgpu (last access: 10 June 2021). The release version 2.0 described in this study (Baumeister and Hoffmann, 2021) is accessible at https://doi.org/10.5281/zenodo.4923608. The code has been released under the terms and conditions of the GNU General Public License (GPL) version 3. The reference spectra used in this study and further test data are also included in the repository.
PFB and LH developed the concept for this study. PFB is the main developer of the GPU implementation and LH the main developer of the CPU reference implementation of JURASSIC. PFB conducted the verification tests and performance analyses of the JURASSICGPU code. Both authors made equal contributions to writing the paper.
The contact author has declared that neither they nor their coauthor has any competing interests.
Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
This work was made possible by efforts conducted in the framework of the POWER Acceleration and Design Center. We thank the Jülich Supercomputing Centre for providing access to the JUWELS Booster. We acknowledge the consultancy of Jiri Kraus (NVIDIA) and earlier contributions by Benedikt Rombach (IBM) and Thorsten Hater (JSC) to the software development as well as vivid discussions with Sabine Grießbach (JSC).
The article processing charges for this openaccess publication were covered by the Forschungszentrum Jülich.
This paper was edited by Sylwester Arabas and reviewed by two anonymous referees.
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