Articles | Volume 10, issue 9
https://doi.org/10.5194/gmd-10-3519-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-10-3519-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Development and technical paper
| 
25 Sep 2017
Development and technical paper |
| 25 Sep 2017
Reverse engineering model structures for soil and ecosystem respiration: the potential of gene expression programming
Max Planck Institute for Biogeochemistry, Department Biogeochemical Integration, Hans-Knoell-Str. 10, 07745 Jena, Germany
Peter Dittrich
Bio Systems Analysis Group, Institute of Computer Science, Jena Centre for Bioinformatics and Friedrich Schiller University, 07745 Jena, Germany
Michael Stifel Center Jena for Data-Driven and Simulation Science, 07745 Jena, Germany
Nuno Carvalhais
Max Planck Institute for Biogeochemistry, Department Biogeochemical Integration, Hans-Knoell-Str. 10, 07745 Jena, Germany
CENSE, Departamento de Ciéncias e Engenharia do Ambiente, Faculdade de Ciéncias e Tecnologia, Universidade NOVA de Lisboa, Caparica, Portugal
Martin Jung
Max Planck Institute for Biogeochemistry, Department Biogeochemical Integration, Hans-Knoell-Str. 10, 07745 Jena, Germany
Andreas Heinemeyer
Department of Environment, Stockholm Environment Institute, University of York, York, YO105NG, UK
Mirco Migliavacca
Max Planck Institute for Biogeochemistry, Department Biogeochemical Integration, Hans-Knoell-Str. 10, 07745 Jena, Germany
James I. L. Morison
Forest Research, Alice Holt Lodge, Farnham, Surrey, GU10 4LH, UK
Sebastian Sippel
Max Planck Institute for Biogeochemistry, Department Biogeochemical Integration, Hans-Knoell-Str. 10, 07745 Jena, Germany
Jens-Arne Subke
Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, UK
Matthew Wilkinson
Forest Research, Alice Holt Lodge, Farnham, Surrey, GU10 4LH, UK
Miguel D. Mahecha
CORRESPONDING AUTHOR
Max Planck Institute for Biogeochemistry, Department Biogeochemical Integration, Hans-Knoell-Str. 10, 07745 Jena, Germany
Michael Stifel Center Jena for Data-Driven and Simulation Science, 07745 Jena, Germany
German Centre for Integrative Biodiversity Research (iDiv), Deutscher Platz 5e, 04103 Leipzig, Germany
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Martin Jung, Jacob Nelson, Mirco Migliavacca, Tarek El-Madany, Dario Papale, Markus Reichstein, Sophia Walther, and Thomas Wutzler
Biogeosciences, 21, 1827–1846, https://doi.org/10.5194/bg-21-1827-2024, https://doi.org/10.5194/bg-21-1827-2024, 2024
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We present a methodology to detect inconsistencies in perhaps the most important data source for measurements of ecosystem–atmosphere carbon, water, and energy fluxes. We expect that the derived consistency flags will be relevant for data users and will help in improving our understanding of and our ability to model ecosystem–climate interactions.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander Winkler
EGUsphere, https://doi.org/10.5194/egusphere-2024-464, https://doi.org/10.5194/egusphere-2024-464, 2024
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Our study employs Long Short-Term Memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlocking the secrets of vegetation phenology responses to climate change with deep learning techniques.
Jacob A. Nelson, Sophia Walther, Fabian Gans, Basil Kraft, Ulrich Weber, Kimberly Novick, Nina Buchmann, Mirco Migliavacca, Georg Wohlfahrt, Ladislav Šigut, Andreas Ibrom, Dario Papale, Mathias Göckede, Gregory Duveiller, Alexander Knohl, Lukas Hörtnagl, Russell L. Scott, Weijie Zhang, Zayd Mahmoud Hamdi, Markus Reichstein, Sergio Aranda-Barranco, Jonas Ardö, Maarten Op de Beeck, Dave Billdesbach, David Bowling, Rosvel Bracho, Christian Brümmer, Gustau Camps-Valls, Shiping Chen, Jamie Rose Cleverly, Ankur Desai, Gang Dong, Tarek S. El-Madany, Eugenie Susanne Euskirchen, Iris Feigenwinter, Marta Galvagno, Giacomo Gerosa, Bert Gielen, Ignacio Goded, Sarah Goslee, Christopher Michael Gough, Bernard Heinesch, Kazuhito Ichii, Marcin Antoni Jackowicz-Korczynski, Anne Klosterhalfen, Sara Knox, Hideki Kobayashi, Kukka-Maaria Kohonen, Mika Korkiakoski, Ivan Mammarella, Gharun Mana, Riccardo Marzuoli, Roser Matamala, Stefan Metzger, Leonardo Montagnani, Giacomo Nicolini, Thomas O'Halloran, Jean-Marc Ourcival, Matthias Peichl, Elise Pendall, Borja Ruiz Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, Marius Schmidt, Christopher R. Schwalm, Ankit Shekhar, Richard Silberstein, Maria Lucia Silveira, Donatella Spano, Torbern Tagesson, Gianluca Tramontana, Carlo Trotta, Fabio Turco, Timo Vesala, Caroline Vincke, Domenico Vitale, Enrique R. Vivoni, Yi Wang, William Woodgate, Enrico A. Yepez, Junhui Zhang, Donatella Zona, and Martin Jung
EGUsphere, https://doi.org/10.5194/egusphere-2024-165, https://doi.org/10.5194/egusphere-2024-165, 2024
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The movement of water, carbon, and energy from the earth surface to the atmosphere, or flux, is an important process to understand that impacts all of our lives. Here we outline a method to estimate global water and CO2 fluxes based on direct measurements from site around the world called FLUXCOM-X. We go on to demonstrate how these new estimates of net CO2 uptake/loss, gross CO2 uptake, total water evaporation, and transpiration from plants compare to previous and independent estimates.
Mana Gharun, Ankit Shekhar, Lukas Hörtnagl, Luana Krebs, Nicola Arriga, Mirco Migliavacca, Marilyn Roland, Bert Gielen, Leonardo Montagnani, Enrico Tomelleri, Ladislav Šigut, Matthias Peichl, Peng Zhao, Marius Schmidt, Thomas Grünwald, Mika Korkiakoski, Annalea Lohila, and Nina Buchmann
EGUsphere, https://doi.org/10.5194/egusphere-2023-2964, https://doi.org/10.5194/egusphere-2023-2964, 2024
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Effect of winter warming on forest CO2 fluxes has rarely been investigated. We tested the effect of the warm winter in 2020 on the forest CO2 fluxes across 14 sites in Europe and found that in colder sites net ecosystem productivity (NEP) declined during the warm winter, while in the warmer sites NEP increased. Warming leads to increased respiration fluxes but if not translated into a direct warming of the soil might not enhance productivity, if the soil within the rooting zone remains frozen.
Jan Sodoge, Christian Kuhlicke, Miguel D. Mahecha, and Mariana Madruga de Brito
Nat. Hazards Earth Syst. Sci. Discuss., https://doi.org/10.5194/nhess-2023-228, https://doi.org/10.5194/nhess-2023-228, 2023
Revised manuscript accepted for NHESS
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We delved into the socio-economic impacts of the 2018–2022 drought in Germany. We derived a dataset covering the impacts of droughts in Germany between 2000 and 2022 on sectors such as agriculture and forestry based on newspaper articles. Notably, our study illustrated that the longer drought had a wider reach and more varied effects . We show that dealing with longer droughts requires different plans compared to shorter ones, and it's crucial to be ready for the challenges they bring.
Hui Yang, Krzysztof Stereńczak, Zbigniew Karaszewski, and Nuno Carvalhais
EGUsphere, https://doi.org/10.5194/egusphere-2023-2691, https://doi.org/10.5194/egusphere-2023-2691, 2023
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Wood density is crucial for ecological and carbon stock assessment, yet its labor-intensive analysis limits studies across species and spaces. Our study, based on 48,000 samples from Central Europe, reveals that, even without species information, 91% of inter-tree variations can be predicted by vegetation indexes, topography, and soil texture. Importantly, we highlight neglected intra-tree variation, showing substantial variations vertically along the height and radially from the center to bark.
Miguel D. Mahecha and Guido Kraemer
EGUsphere, https://doi.org/10.5194/egusphere-2023-2760, https://doi.org/10.5194/egusphere-2023-2760, 2023
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Our paper examines the influential visual representation of the planetary boundary concept, a widely discussed concept for understanding the limits of the Earth to sustain human societies. We identify three aspects that can lead to misleading interpretations: 1) exaggeration of effect size, 2) complex colour patterns, and 3) combined effects that could potentially overstate certain risks. We suggest revising these visual elements to improve accuracy in communicating this important concept.
Sebastian Sippel, Clair Barnes, Camille Cadiou, Erich Fischer, Sarah Kew, Marlene Kretschmer, Sjoukje Philip, Theodore G. Shepherd, Jitendra Singh, Robert Vautard, and Pascal Yiou
EGUsphere, https://doi.org/10.5194/egusphere-2023-2523, https://doi.org/10.5194/egusphere-2023-2523, 2023
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Winter temperature in Central Europe have warmed. But cold winters can still cause problems for energy systems, infrastructure, or human health. Here we tested whether a record-cold winter, such as the one observed in 1963 over Central Europe, could still occur despite climate change. The answer is yes, it’s possible, but it’s very unlikely. Our results rely on climate model simulations and statistical rare event analysis. In conclusion, society must be prepared for such cold winters.
Sinikka J. Paulus, Rene Orth, Sung-Ching Lee, Anke Hildebrandt, Martin Jung, Jacob A. Nelson, Tarek S. El-Madany, Arnaud Carrara, Gerardo Moreno, Matthias Mauder, Jannis Groh, Alexander Graf, Markus Reichstein, and Mirco Migliavacca
EGUsphere, https://doi.org/10.5194/egusphere-2023-2556, https://doi.org/10.5194/egusphere-2023-2556, 2023
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In this analysis, we compare weighing lysimeters and the eddy covariance (EC) method to test if EC is able to measure the adsorption of atmospheric water vapor by soils at night. We find this flux to occur frequently during dry nights in a Mediterranean ecosystem and 88.8 % of the EC-measured downward-directed vapor fluxes occur when at least one lysimeter detects soil vapor adsorption. The EC method underestimates however both, evaporation and soil vapor adsorption at the site.
Richard Nair, Yunpeng Luo, Tarek El-Madany, Victor Rolo, Javier Pacheco-Labrador, Silvia Caldararu, Kendalynn A. Morris, Marion Schrumpf, Arnaud Carrara, Gerardo Moreno, Markus Reichstein, and Mirco Migliavacca
EGUsphere, https://doi.org/10.5194/egusphere-2023-2434, https://doi.org/10.5194/egusphere-2023-2434, 2023
Preprint archived
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We studied a Mediterranean ecosystem to understand carbon uptake efficiency and its controls. These ecosystems face potential nitrogen-phosphorus imbalances due to pollution. Analysing six years of carbon data, we assessed controls at different timeframes. This is crucial for predicting such vulnerable regions. Our findings revealed N limitation on C uptake, not N:P imbalance, and strong influence of water availability. whether drought or wetness promoted net C uptake depended on timescale.
Francesco Martinuzzi, Miguel D. Mahecha, Gustau Camps-Valls, David Montero, Tristan Williams, and Karin Mora
EGUsphere, https://doi.org/10.5194/egusphere-2023-2368, https://doi.org/10.5194/egusphere-2023-2368, 2023
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We investigated how machine learning can forecast extreme vegetation responses to weather. Examining four models, no single one stood out as the best, though "echo state networks" showed minor advantages. Our results indicate that while these tools are able to generally model vegetation states, they face challenges under extreme conditions. This underlines the potential of artificial intelligence in ecosystem modeling, also pinpointing areas that need further research.
A. Elia, M. Pickering, M. Girardello, G. Oton, G. Ceccherini, S. Capobianco, M. Piccardo, G. Forzieri, M. Migliavacca, and A. Cescatti
Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLVIII-4-W7-2023, 41–46, https://doi.org/10.5194/isprs-archives-XLVIII-4-W7-2023-41-2023, https://doi.org/10.5194/isprs-archives-XLVIII-4-W7-2023-41-2023, 2023
Hoontaek Lee, Martin Jung, Nuno Carvalhais, Tina Trautmann, Basil Kraft, Markus Reichstein, Matthias Forkel, and Sujan Koirala
Hydrol. Earth Syst. Sci., 27, 1531–1563, https://doi.org/10.5194/hess-27-1531-2023, https://doi.org/10.5194/hess-27-1531-2023, 2023
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We spatially attribute the variance in global terrestrial water storage (TWS) interannual variability (IAV) and its modeling error with two data-driven hydrological models. We find error hotspot regions that show a disproportionately large significance in the global mismatch and the association of the error regions with a smaller-scale lateral convergence of water. Our findings imply that TWS IAV modeling can be efficiently improved by focusing on model representations for the error hotspots.
Iris Elisabeth de Vries, Sebastian Sippel, Angeline Greene Pendergrass, and Reto Knutti
Earth Syst. Dynam., 14, 81–100, https://doi.org/10.5194/esd-14-81-2023, https://doi.org/10.5194/esd-14-81-2023, 2023
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Precipitation change is an important consequence of climate change, but it is hard to detect and quantify. Our intuitive method yields robust and interpretable detection of forced precipitation change in three observational datasets for global mean and extreme precipitation, but the different observational datasets show different magnitudes of forced change. Assessment and reduction of uncertainties surrounding forced precipitation change are important for future projections and adaptation.
Sinikka Jasmin Paulus, Tarek Sebastian El-Madany, René Orth, Anke Hildebrandt, Thomas Wutzler, Arnaud Carrara, Gerardo Moreno, Oscar Perez-Priego, Olaf Kolle, Markus Reichstein, and Mirco Migliavacca
Hydrol. Earth Syst. Sci., 26, 6263–6287, https://doi.org/10.5194/hess-26-6263-2022, https://doi.org/10.5194/hess-26-6263-2022, 2022
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In this study, we analyze small inputs of water to ecosystems such as fog, dew, and adsorption of vapor. To measure them, we use a scaling system and later test our attribution of different water fluxes to weight changes. We found that they occur frequently during 1 year in a dry summer ecosystem. In each season, a different flux seems dominant, but they all mainly occur during the night. Therefore, they could be important for the biosphere because rain is unevenly distributed over the year.
Na Li, Sebastian Sippel, Alexander J. Winkler, Miguel D. Mahecha, Markus Reichstein, and Ana Bastos
Earth Syst. Dynam., 13, 1505–1533, https://doi.org/10.5194/esd-13-1505-2022, https://doi.org/10.5194/esd-13-1505-2022, 2022
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Quantifying the imprint of large-scale atmospheric circulation dynamics and associated carbon cycle responses is key to improving our understanding of carbon cycle dynamics. Using a statistical model that relies on spatiotemporal sea level pressure as a proxy for large-scale atmospheric circulation, we quantify the fraction of interannual variability in atmospheric CO2 growth rate and the land CO2 sink that are driven by atmospheric circulation variability.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
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Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
D. Montero, C. Aybar, M. D. Mahecha, and S. Wieneke
Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLVIII-4-W1-2022, 301–306, https://doi.org/10.5194/isprs-archives-XLVIII-4-W1-2022-301-2022, https://doi.org/10.5194/isprs-archives-XLVIII-4-W1-2022-301-2022, 2022
Sophia Walther, Simon Besnard, Jacob Allen Nelson, Tarek Sebastian El-Madany, Mirco Migliavacca, Ulrich Weber, Nuno Carvalhais, Sofia Lorena Ermida, Christian Brümmer, Frederik Schrader, Anatoly Stanislavovich Prokushkin, Alexey Vasilevich Panov, and Martin Jung
Biogeosciences, 19, 2805–2840, https://doi.org/10.5194/bg-19-2805-2022, https://doi.org/10.5194/bg-19-2805-2022, 2022
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Satellite observations help interpret station measurements of local carbon, water, and energy exchange between the land surface and the atmosphere and are indispensable for simulations of the same in land surface models and their evaluation. We propose generalisable and efficient approaches to systematically ensure high quality and to estimate values in data gaps. We apply them to satellite data of surface reflectance and temperature with different resolutions at the stations.
Basil Kraft, Martin Jung, Marco Körner, Sujan Koirala, and Markus Reichstein
Hydrol. Earth Syst. Sci., 26, 1579–1614, https://doi.org/10.5194/hess-26-1579-2022, https://doi.org/10.5194/hess-26-1579-2022, 2022
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We present a physics-aware machine learning model of the global hydrological cycle. As the model uses neural networks under the hood, the simulations of the water cycle are learned from data, and yet they are informed and constrained by physical knowledge. The simulated patterns lie within the range of existing hydrological models and are plausible. The hybrid modeling approach has the potential to tackle key environmental questions from a novel perspective.
Tina Trautmann, Sujan Koirala, Nuno Carvalhais, Andreas Güntner, and Martin Jung
Hydrol. Earth Syst. Sci., 26, 1089–1109, https://doi.org/10.5194/hess-26-1089-2022, https://doi.org/10.5194/hess-26-1089-2022, 2022
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We assess the effect of how vegetation is defined in a global hydrological model on the composition of total water storage (TWS). We compare two experiments, one with globally uniform and one with vegetation parameters that vary in space and time. While both experiments are constrained against observational data, we found a drastic change in the partitioning of TWS, highlighting the important role of the interaction between groundwater–soil moisture–vegetation in understanding TWS variations.
J. Pacheco-Labrador, U. Weber, X. Ma, M. D. Mahecha, N. Carvalhais, C. Wirth, A. Huth, F. J. Bohn, G. Kraemer, U. Heiden, FunDivEUROPE members, and M. Migliavacca
Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLVI-1-W1-2021, 49–55, https://doi.org/10.5194/isprs-archives-XLVI-1-W1-2021-49-2022, https://doi.org/10.5194/isprs-archives-XLVI-1-W1-2021-49-2022, 2022
Josephin Kroll, Jasper M. C. Denissen, Mirco Migliavacca, Wantong Li, Anke Hildebrandt, and Rene Orth
Biogeosciences, 19, 477–489, https://doi.org/10.5194/bg-19-477-2022, https://doi.org/10.5194/bg-19-477-2022, 2022
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Plant growth relies on having access to energy (solar radiation) and water (soil moisture). This energy and water availability is impacted by weather extremes, like heat waves and droughts, which will occur more frequently in response to climate change. In this context, we analysed global satellite data to detect in which regions extreme plant growth is controlled by energy or water. We find that extreme plant growth is associated with temperature- or soil-moisture-related extremes.
Renée Hermans, Rebecca McKenzie, Roxane Andersen, Yit Arn Teh, Neil Cowie, and Jens-Arne Subke
Biogeosciences, 19, 313–327, https://doi.org/10.5194/bg-19-313-2022, https://doi.org/10.5194/bg-19-313-2022, 2022
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Peatlands are a significant global carbon store, which can be compromised by drainage and afforestation. We measured the peat decomposition under a 30-year-old drained forest plantation: 115 ± 16 g C m−2 yr−1, ca. 40 % of total soil respiration. Considering input of litter from trees, our results indicate that the soils in these 30-year-old drained and afforested peatlands are a net sink for C, since substantially more C enters the soil as organic matter than is decomposed heterotrophically.
Simon Besnard, Sujan Koirala, Maurizio Santoro, Ulrich Weber, Jacob Nelson, Jonas Gütter, Bruno Herault, Justin Kassi, Anny N'Guessan, Christopher Neigh, Benjamin Poulter, Tao Zhang, and Nuno Carvalhais
Earth Syst. Sci. Data, 13, 4881–4896, https://doi.org/10.5194/essd-13-4881-2021, https://doi.org/10.5194/essd-13-4881-2021, 2021
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Forest age can determine the capacity of a forest to uptake carbon from the atmosphere. Yet, a lack of global diagnostics that reflect the forest stage and associated disturbance regimes hampers the quantification of age-related differences in forest carbon dynamics. In this paper, we introduced a new global distribution of forest age inferred from forest inventory, remote sensing and climate data in support of a better understanding of the global dynamics in the forest water and carbon cycles.
Christina Heinze-Deml, Sebastian Sippel, Angeline G. Pendergrass, Flavio Lehner, and Nicolai Meinshausen
Geosci. Model Dev., 14, 4977–4999, https://doi.org/10.5194/gmd-14-4977-2021, https://doi.org/10.5194/gmd-14-4977-2021, 2021
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Quantifying dynamical and thermodynamical components of regional precipitation change is a key challenge in climate science. We introduce a novel statistical model (Latent Linear Adjustment Autoencoder) that combines the flexibility of deep neural networks with the robustness advantages of linear regression. The method enables estimation of the contribution of a coarse-scale atmospheric circulation proxy to daily precipitation at high resolution and in a spatially coherent manner.
Maurizio Santoro, Oliver Cartus, Nuno Carvalhais, Danaë M. A. Rozendaal, Valerio Avitabile, Arnan Araza, Sytze de Bruin, Martin Herold, Shaun Quegan, Pedro Rodríguez-Veiga, Heiko Balzter, João Carreiras, Dmitry Schepaschenko, Mikhail Korets, Masanobu Shimada, Takuya Itoh, Álvaro Moreno Martínez, Jura Cavlovic, Roberto Cazzolla Gatti, Polyanna da Conceição Bispo, Nasheta Dewnath, Nicolas Labrière, Jingjing Liang, Jeremy Lindsell, Edward T. A. Mitchard, Alexandra Morel, Ana Maria Pacheco Pascagaza, Casey M. Ryan, Ferry Slik, Gaia Vaglio Laurin, Hans Verbeeck, Arief Wijaya, and Simon Willcock
Earth Syst. Sci. Data, 13, 3927–3950, https://doi.org/10.5194/essd-13-3927-2021, https://doi.org/10.5194/essd-13-3927-2021, 2021
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Forests play a crucial role in Earth’s carbon cycle. To understand the carbon cycle better, we generated a global dataset of forest above-ground biomass, i.e. carbon stocks, from satellite data of 2010. This dataset provides a comprehensive and detailed portrait of the distribution of carbon in forests, although for dense forests in the tropics values are somewhat underestimated. This dataset will have a considerable impact on climate, carbon, and socio-economic modelling schemes.
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos P. M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugénie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, André Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Hölttä, Friso Holwerda, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Anders Lindroth, Pilar Llorens, Álvaro López-Bernal, Michael M. Loranty, Dietmar Lüttschwager, Cate Macinnis-Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez-Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, and Jordi Martínez-Vilalta
Earth Syst. Sci. Data, 13, 2607–2649, https://doi.org/10.5194/essd-13-2607-2021, https://doi.org/10.5194/essd-13-2607-2021, 2021
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Transpiration is a key component of global water balance, but it is poorly constrained from available observations. We present SAPFLUXNET, the first global database of tree-level transpiration from sap flow measurements, containing 202 datasets and covering a wide range of ecological conditions. SAPFLUXNET and its accompanying R software package
sapfluxnetrwill facilitate new data syntheses on the ecological factors driving water use and drought responses of trees and forests.
Christopher Krich, Mirco Migliavacca, Diego G. Miralles, Guido Kraemer, Tarek S. El-Madany, Markus Reichstein, Jakob Runge, and Miguel D. Mahecha
Biogeosciences, 18, 2379–2404, https://doi.org/10.5194/bg-18-2379-2021, https://doi.org/10.5194/bg-18-2379-2021, 2021
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Ecosystems and the atmosphere interact with each other. These interactions determine e.g. the water and carbon fluxes and thus are crucial to understand climate change effects. We analysed the interactions for many ecosystems across the globe, showing that very different ecosystems can have similar interactions with the atmosphere. Meteorological conditions seem to be the strongest interaction-shaping factor. This means that common principles can be identified to describe ecosystem behaviour.
Milan Flach, Alexander Brenning, Fabian Gans, Markus Reichstein, Sebastian Sippel, and Miguel D. Mahecha
Biogeosciences, 18, 39–53, https://doi.org/10.5194/bg-18-39-2021, https://doi.org/10.5194/bg-18-39-2021, 2021
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Drought and heat events affect the uptake and sequestration of carbon in terrestrial ecosystems. We study the impact of droughts and heatwaves on the uptake of CO2 of different vegetation types at the global scale. We find that agricultural areas are generally strongly affected. Forests instead are not particularly sensitive to the events under scrutiny. This implies different water management strategies of forests but also a lack of sensitivity to remote-sensing-derived vegetation activity.
Naixin Fan, Sujan Koirala, Markus Reichstein, Martin Thurner, Valerio Avitabile, Maurizio Santoro, Bernhard Ahrens, Ulrich Weber, and Nuno Carvalhais
Earth Syst. Sci. Data, 12, 2517–2536, https://doi.org/10.5194/essd-12-2517-2020, https://doi.org/10.5194/essd-12-2517-2020, 2020
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The turnover time of terrestrial carbon (τ) controls the global carbon cycle–climate feedback. In this study, we provide a new, updated ensemble of diagnostic terrestrial carbon turnover times and associated uncertainties on a global scale. Despite the large variation in both magnitude and spatial patterns of τ, we identified robust features in the spatial patterns of τ which could contribute to uncertainty reductions in future projections of the carbon cycle–climate feedback.
B. Kraft, M. Jung, M. Körner, and M. Reichstein
Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLIII-B2-2020, 1537–1544, https://doi.org/10.5194/isprs-archives-XLIII-B2-2020-1537-2020, https://doi.org/10.5194/isprs-archives-XLIII-B2-2020-1537-2020, 2020
Daniel E. Pabon-Moreno, Talie Musavi, Mirco Migliavacca, Markus Reichstein, Christine Römermann, and Miguel D. Mahecha
Biogeosciences, 17, 3991–4006, https://doi.org/10.5194/bg-17-3991-2020, https://doi.org/10.5194/bg-17-3991-2020, 2020
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Ecosystem CO2 uptake changes in time depending on climate conditions. In this study, we analyze how different climate variables affect the timing when CO2 uptake is at a maximum (DOYGPPmax). We found that the joint effects of radiation, temperature, and vapor pressure deficit are the most relevant controlling factors of DOYGPPmax and that if they increase, DOYGPPmax will happen earlier. These results help us to better understand how CO2 uptake could be affected by climate change.
Veronika Eyring, Lisa Bock, Axel Lauer, Mattia Righi, Manuel Schlund, Bouwe Andela, Enrico Arnone, Omar Bellprat, Björn Brötz, Louis-Philippe Caron, Nuno Carvalhais, Irene Cionni, Nicola Cortesi, Bas Crezee, Edouard L. Davin, Paolo Davini, Kevin Debeire, Lee de Mora, Clara Deser, David Docquier, Paul Earnshaw, Carsten Ehbrecht, Bettina K. Gier, Nube Gonzalez-Reviriego, Paul Goodman, Stefan Hagemann, Steven Hardiman, Birgit Hassler, Alasdair Hunter, Christopher Kadow, Stephan Kindermann, Sujan Koirala, Nikolay Koldunov, Quentin Lejeune, Valerio Lembo, Tomas Lovato, Valerio Lucarini, François Massonnet, Benjamin Müller, Amarjiit Pandde, Núria Pérez-Zanón, Adam Phillips, Valeriu Predoi, Joellen Russell, Alistair Sellar, Federico Serva, Tobias Stacke, Ranjini Swaminathan, Verónica Torralba, Javier Vegas-Regidor, Jost von Hardenberg, Katja Weigel, and Klaus Zimmermann
Geosci. Model Dev., 13, 3383–3438, https://doi.org/10.5194/gmd-13-3383-2020, https://doi.org/10.5194/gmd-13-3383-2020, 2020
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The Earth System Model Evaluation Tool (ESMValTool) is a community diagnostics and performance metrics tool designed to improve comprehensive and routine evaluation of earth system models (ESMs) participating in the Coupled Model Intercomparison Project (CMIP). It has undergone rapid development since the first release in 2016 and is now a well-tested tool that provides end-to-end provenance tracking to ensure reproducibility.
Thomas Wutzler, Oscar Perez-Priego, Kendalynn Morris, Tarek S. El-Madany, and Mirco Migliavacca
Geosci. Instrum. Method. Data Syst., 9, 239–254, https://doi.org/10.5194/gi-9-239-2020, https://doi.org/10.5194/gi-9-239-2020, 2020
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Continuous data of soil CO2 efflux can improve model prediction of climate warming, and automated data are becoming increasingly available. However, aggregating chamber-based data to plot scale pose challenges. Therefore, we showed, using 1 year of half-hourly data, how using the lognormal assumption tackles several challenges. We propose that plot-scale SO2 efflux observations should be reported together with lognormally based uncertainties and enter model constraining frameworks at log scale.
Guido Kraemer, Gustau Camps-Valls, Markus Reichstein, and Miguel D. Mahecha
Biogeosciences, 17, 2397–2424, https://doi.org/10.5194/bg-17-2397-2020, https://doi.org/10.5194/bg-17-2397-2020, 2020
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To closely monitor the state of our planet, we require systems that can monitor
the observation of many different properties at the same time. We create
indicators that resemble the behavior of many different simultaneous
observations. We apply the method to create indicators representing the
Earth's biosphere. The indicators show a productivity gradient and a water
gradient. The resulting indicators can detect a large number of changes and
extremes in the Earth system.
Barbara Marcolla, Mirco Migliavacca, Christian Rödenbeck, and Alessandro Cescatti
Biogeosciences, 17, 2365–2379, https://doi.org/10.5194/bg-17-2365-2020, https://doi.org/10.5194/bg-17-2365-2020, 2020
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This work investigates the sensitivity of terrestrial CO2 fluxes to climate drivers. We observed that CO2 flux is mostly controlled by temperature during the growing season and by radiation off season. We also observe that radiation importance is increasing over time while sensitivity to temperature is decreasing in Eurasia. Ultimately this analysis shows that ecosystem response to climate is changing, with potential repercussions for future terrestrial sink and land role in climate mitigation.
Hendrik Andersen, Jan Cermak, Julia Fuchs, Peter Knippertz, Marco Gaetani, Julian Quinting, Sebastian Sippel, and Roland Vogt
Atmos. Chem. Phys., 20, 3415–3438, https://doi.org/10.5194/acp-20-3415-2020, https://doi.org/10.5194/acp-20-3415-2020, 2020
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Fog and low clouds (FLCs) are an essential but poorly understood element of Namib regional climate. Here, a satellite-based data set of FLCs in central Namib, reanalysis data, and back trajectories are used to systematically analyze conditions when FLCs occur. Synoptic-scale mechanisms are identified that influence the formation of FLCs and the onshore advection of marine boundary-layer air masses. The findings lead to a new conceptual model of mechanisms that drive FLC variability in the Namib.
Martin Jung, Christopher Schwalm, Mirco Migliavacca, Sophia Walther, Gustau Camps-Valls, Sujan Koirala, Peter Anthoni, Simon Besnard, Paul Bodesheim, Nuno Carvalhais, Frédéric Chevallier, Fabian Gans, Daniel S. Goll, Vanessa Haverd, Philipp Köhler, Kazuhito Ichii, Atul K. Jain, Junzhi Liu, Danica Lombardozzi, Julia E. M. S. Nabel, Jacob A. Nelson, Michael O'Sullivan, Martijn Pallandt, Dario Papale, Wouter Peters, Julia Pongratz, Christian Rödenbeck, Stephen Sitch, Gianluca Tramontana, Anthony Walker, Ulrich Weber, and Markus Reichstein
Biogeosciences, 17, 1343–1365, https://doi.org/10.5194/bg-17-1343-2020, https://doi.org/10.5194/bg-17-1343-2020, 2020
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We test the approach of producing global gridded carbon fluxes based on combining machine learning with local measurements, remote sensing and climate data. We show that we can reproduce seasonal variations in carbon assimilated by plants via photosynthesis and in ecosystem net carbon balance. The ecosystem’s mean carbon balance and carbon flux trends require cautious interpretation. The analysis paves the way for future improvements of the data-driven assessment of carbon fluxes.
Christopher Krich, Jakob Runge, Diego G. Miralles, Mirco Migliavacca, Oscar Perez-Priego, Tarek El-Madany, Arnaud Carrara, and Miguel D. Mahecha
Biogeosciences, 17, 1033–1061, https://doi.org/10.5194/bg-17-1033-2020, https://doi.org/10.5194/bg-17-1033-2020, 2020
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Causal inference promises new insight into biosphere–atmosphere interactions using time series only. To understand the behaviour of a specific method on such data, we used artificial and observation-based data. The observed structures are very interpretable and reveal certain ecosystem-specific behaviour, as only a few relevant links remain, in contrast to pure correlation techniques. Thus, causal inference allows to us gain well-constrained insights into processes and interactions.
Miguel D. Mahecha, Fabian Gans, Gunnar Brandt, Rune Christiansen, Sarah E. Cornell, Normann Fomferra, Guido Kraemer, Jonas Peters, Paul Bodesheim, Gustau Camps-Valls, Jonathan F. Donges, Wouter Dorigo, Lina M. Estupinan-Suarez, Victor H. Gutierrez-Velez, Martin Gutwin, Martin Jung, Maria C. Londoño, Diego G. Miralles, Phillip Papastefanou, and Markus Reichstein
Earth Syst. Dynam., 11, 201–234, https://doi.org/10.5194/esd-11-201-2020, https://doi.org/10.5194/esd-11-201-2020, 2020
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The ever-growing availability of data streams on different subsystems of the Earth brings unprecedented scientific opportunities. However, researching a data-rich world brings novel challenges. We present the concept of
Earth system data cubesto study the complex dynamics of multiple climate and ecosystem variables across space and time. Using a series of example studies, we highlight the potential of effectively considering the full multivariate nature of processes in the Earth system.
Nora Linscheid, Lina M. Estupinan-Suarez, Alexander Brenning, Nuno Carvalhais, Felix Cremer, Fabian Gans, Anja Rammig, Markus Reichstein, Carlos A. Sierra, and Miguel D. Mahecha
Biogeosciences, 17, 945–962, https://doi.org/10.5194/bg-17-945-2020, https://doi.org/10.5194/bg-17-945-2020, 2020
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Vegetation typically responds to variation in temperature and rainfall within days. Yet seasonal changes in meteorological conditions, as well as decadal climate variability, additionally shape the state of ecosystems. It remains unclear how vegetation responds to climate variability on these different timescales. We find that the vegetation response to climate variability depends on the timescale considered. This scale dependency should be considered for modeling land–atmosphere interactions.
Javier Pacheco-Labrador, Tarek S. El-Madany, M. Pilar Martin, Rosario Gonzalez-Cascon, Arnaud Carrara, Gerardo Moreno, Oscar Perez-Priego, Tiana Hammer, Heiko Moossen, Kathrin Henkel, Olaf Kolle, David Martini, Vicente Burchard, Christiaan van der Tol, Karl Segl, Markus Reichstein, and Mirco Migliavacca
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-501, https://doi.org/10.5194/bg-2019-501, 2020
Revised manuscript not accepted
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The new generation of sensors on-board satellites have the potential to provide richer information about the function of vegetation than before. This information, nowadays missing, is fundamental to improve our understanding and prediction of carbon and water cycles, and therefore to anticipate effects and responses to Climate Change. In this manuscript we propose a method to exploit the data provided by these satellites to successfully obtain this information key to face Climate Change.
Paul C. Stoy, Tarek S. El-Madany, Joshua B. Fisher, Pierre Gentine, Tobias Gerken, Stephen P. Good, Anne Klosterhalfen, Shuguang Liu, Diego G. Miralles, Oscar Perez-Priego, Angela J. Rigden, Todd H. Skaggs, Georg Wohlfahrt, Ray G. Anderson, A. Miriam J. Coenders-Gerrits, Martin Jung, Wouter H. Maes, Ivan Mammarella, Matthias Mauder, Mirco Migliavacca, Jacob A. Nelson, Rafael Poyatos, Markus Reichstein, Russell L. Scott, and Sebastian Wolf
Biogeosciences, 16, 3747–3775, https://doi.org/10.5194/bg-16-3747-2019, https://doi.org/10.5194/bg-16-3747-2019, 2019
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Key findings are the nearly optimal response of T to atmospheric water vapor pressure deficits across methods and scales. Additionally, the notion that T / ET intermittently approaches 1, which is a basis for many partitioning methods, does not hold for certain methods and ecosystems. To better constrain estimates of E and T from combined ET measurements, we propose a combination of independent measurement techniques to better constrain E and T at the ecosystem scale.
Vicente Burchard-Levine, Héctor Nieto, David Riaño, Mirco Migliavacca, Tarek S. El-Madany, Oscar Perez-Priego, Arnaud Carrara, and M. Pilar Martín
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2019-354, https://doi.org/10.5194/hess-2019-354, 2019
Manuscript not accepted for further review
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Models are increasingly being used to understand surface water fluxes, which are of high use to manage crop irrigation, and to understand the earth system´s response to environmental change. However, often these models have higher uncertainty in complex ecosystems with multiple layers of vegetation. This manuscript adapts and analyzes a well known model to better simulate water fluxes for a savanna-like ecosystem and to understand the influence that vegetation has on their predictions.
Sven Boese, Martin Jung, Nuno Carvalhais, Adriaan J. Teuling, and Markus Reichstein
Biogeosciences, 16, 2557–2572, https://doi.org/10.5194/bg-16-2557-2019, https://doi.org/10.5194/bg-16-2557-2019, 2019
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This study examines how limited water availability during droughts affects water-use efficiency. This metric describes how much carbon an ecosystem can assimilate for each unit of water lost by transpiration. We test how well different water-use efficiency models can capture the dynamics of transpiration decrease due to increased soil-water limitation. Accounting for the interacting effects of radiation and water limitation is necessary to accurately predict transpiration during these periods.
Richard K. F. Nair, Kendalynn A. Morris, Martin Hertel, Yunpeng Luo, Gerardo Moreno, Markus Reichstein, Marion Schrumpf, and Mirco Migliavacca
Biogeosciences, 16, 1883–1901, https://doi.org/10.5194/bg-16-1883-2019, https://doi.org/10.5194/bg-16-1883-2019, 2019
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We investigated how nutrient availability affects seasonal timing of root growth and death in a Spanish savanna, adapted to a long summer drought. We found that nitrogen (N) additions led to more root biomass but number of roots was higher with N and phosphorus together. These effects were strongly affected by the time of year. In autumn root growth occurred after leaf production. This has implications for how we understand biomass production and carbon uptake in these systems.
Biagio Di Mauro, Roberto Garzonio, Micol Rossini, Gianluca Filippa, Paolo Pogliotti, Marta Galvagno, Umberto Morra di Cella, Mirco Migliavacca, Giovanni Baccolo, Massimiliano Clemenza, Barbara Delmonte, Valter Maggi, Marie Dumont, François Tuzet, Matthieu Lafaysse, Samuel Morin, Edoardo Cremonese, and Roberto Colombo
The Cryosphere, 13, 1147–1165, https://doi.org/10.5194/tc-13-1147-2019, https://doi.org/10.5194/tc-13-1147-2019, 2019
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The snow albedo reduction due to dust from arid regions alters the melting dynamics of the snowpack, resulting in earlier snowmelt. We estimate up to 38 days of anticipated snow disappearance for a season that was characterized by a strong dust deposition event. This process has a series of further impacts. For example, earlier snowmelts may alter the hydrological cycle in the Alps, induce higher sensitivity to late summer drought, and finally impact vegetation and animal phenology.
Xiaolu Tang, Nuno Carvalhais, Catarina Moura, Bernhard Ahrens, Sujan Koirala, Shaohui Fan, Fengying Guan, Wenjie Zhang, Sicong Gao, Vincenzo Magliulo, Pauline Buysse, Shibin Liu, Guo Chen, Wunian Yang, Zhen Yu, Jingjing Liang, Leilei Shi, Shenyan Pu, and Markus Reichstein
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-37, https://doi.org/10.5194/bg-2019-37, 2019
Preprint withdrawn
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Vegetation CUE is a key measure of carbon transfer from the atmosphere to terrestrial biomass. This study modelled global CUE with published observations using random forest. CUE varied with ecosystem types and spatially decreased with latitude, challenging the previous conclusion that CUE was independent of environmental controls. Our results emphasize a better understanding of environmental controls on CUE to reduce uncertainties in prognostic land-process model simulations.
Boaz Hilman, Jan Muhr, Susan E. Trumbore, Norbert Kunert, Mariah S. Carbone, Päivi Yuval, S. Joseph Wright, Gerardo Moreno, Oscar Pérez-Priego, Mirco Migliavacca, Arnaud Carrara, José M. Grünzweig, Yagil Osem, Tal Weiner, and Alon Angert
Biogeosciences, 16, 177–191, https://doi.org/10.5194/bg-16-177-2019, https://doi.org/10.5194/bg-16-177-2019, 2019
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Combined measurement of CO2 / O2 fluxes in tree stems suggested that on average 41 % of the respired CO2 was not emitted locally to the atmosphere. This finding strengthens the recognition that CO2 efflux from tree stems is not an accurate measure of respiration. The CO2 / O2 fluxes did not vary as expected if CO2 dissolution in the xylem sap was the main driver for the CO2 retention. We suggest the examination of refixation of respired CO2 as a possible mechanism for CO2 retention.
Martina Franz, Rocio Alonso, Almut Arneth, Patrick Büker, Susana Elvira, Giacomo Gerosa, Lisa Emberson, Zhaozhong Feng, Didier Le Thiec, Riccardo Marzuoli, Elina Oksanen, Johan Uddling, Matthew Wilkinson, and Sönke Zaehle
Biogeosciences, 15, 6941–6957, https://doi.org/10.5194/bg-15-6941-2018, https://doi.org/10.5194/bg-15-6941-2018, 2018
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Four published ozone damage functions previously used in terrestrial biosphere models were evaluated regarding their ability to simulate observed biomass dose–response relationships using the O-CN model. Neither damage function was able to reproduce the observed ozone-induced biomass reductions. Calibrating a plant-functional-type-specific relationship between accumulated ozone uptake and leaf-level photosynthesis did lead to a good agreement between observed and modelled ozone damage.
Sophia Walther, Luis Guanter, Birgit Heim, Martin Jung, Gregory Duveiller, Aleksandra Wolanin, and Torsten Sachs
Biogeosciences, 15, 6221–6256, https://doi.org/10.5194/bg-15-6221-2018, https://doi.org/10.5194/bg-15-6221-2018, 2018
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We explored the timing of the peak of the short annual growing season in tundra ecosystems as indicated by an extensive suite of satellite indicators of vegetation productivity. Delayed peak greenness compared to peak photosynthesis is consistently found across years and land-cover classes. Plants also experience growth after optimal conditions for assimilation regarding light and temperature have passed. Our results have implications for the modelling of the circumpolar carbon balance.
Milan Flach, Sebastian Sippel, Fabian Gans, Ana Bastos, Alexander Brenning, Markus Reichstein, and Miguel D. Mahecha
Biogeosciences, 15, 6067–6085, https://doi.org/10.5194/bg-15-6067-2018, https://doi.org/10.5194/bg-15-6067-2018, 2018
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Northern forests enhanced their productivity during and before the 2010 Russian mega heatwave. We scrutinize this issue with a novel type of multivariate extreme event detection approach. Forests compensate for 54 % of the carbon losses in agricultural ecosystems due to vulnerable conditions in spring and better water management in summer. The findings highlight the importance of forests in mitigating climate change, while not alleviating the consequences of extreme events for food security.
Thomas Wutzler, Antje Lucas-Moffat, Mirco Migliavacca, Jürgen Knauer, Kerstin Sickel, Ladislav Šigut, Olaf Menzer, and Markus Reichstein
Biogeosciences, 15, 5015–5030, https://doi.org/10.5194/bg-15-5015-2018, https://doi.org/10.5194/bg-15-5015-2018, 2018
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Net fluxes of carbon dioxide at the ecosystem level measured by eddy covariance are a main source for understanding biosphere–atmosphere interactions. However, there is a need for more usable and extensible tools for post-processing steps of the half-hourly flux data. Therefore, we developed the REddyProc package, providing data filtering, gap filling, and flux partitioning. The extensible functions are compatible with state-of-the-art tools but allow easier integration in extended analysis.
Tina Trautmann, Sujan Koirala, Nuno Carvalhais, Annette Eicker, Manfred Fink, Christoph Niemann, and Martin Jung
Hydrol. Earth Syst. Sci., 22, 4061–4082, https://doi.org/10.5194/hess-22-4061-2018, https://doi.org/10.5194/hess-22-4061-2018, 2018
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In this study, we adjust a simple hydrological model to several observational datasets, including satellite observations of the land's total water storage. We apply the model to northern latitudes and find that the dominating factor of changes in the total water storage depends on both the spatial and temporal scale of analysis. While snow dominates seasonal variations, liquid water determines year-to-year variations, yet with increasing contribution of snow when averaging over larger regions.
Paul Bodesheim, Martin Jung, Fabian Gans, Miguel D. Mahecha, and Markus Reichstein
Earth Syst. Sci. Data, 10, 1327–1365, https://doi.org/10.5194/essd-10-1327-2018, https://doi.org/10.5194/essd-10-1327-2018, 2018
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We provide continuous half-hourly carbon and energy fluxes for 2001 to 2014 at 0.5° spatial resolution, which allows for analyzing diurnal cycles globally. The data set contains four fluxes: gross primary production (GPP), net ecosystem exchange (NEE), latent heat (LE), and sensible heat (H). In addition, we provide a derived product that only contains monthly average diurnal cycles but which also enables us to study the important characteristics of subdaily patterns at a global scale.
Donghai Wu, Philippe Ciais, Nicolas Viovy, Alan K. Knapp, Kevin Wilcox, Michael Bahn, Melinda D. Smith, Sara Vicca, Simone Fatichi, Jakob Zscheischler, Yue He, Xiangyi Li, Akihiko Ito, Almut Arneth, Anna Harper, Anna Ukkola, Athanasios Paschalis, Benjamin Poulter, Changhui Peng, Daniel Ricciuto, David Reinthaler, Guangsheng Chen, Hanqin Tian, Hélène Genet, Jiafu Mao, Johannes Ingrisch, Julia E. S. M. Nabel, Julia Pongratz, Lena R. Boysen, Markus Kautz, Michael Schmitt, Patrick Meir, Qiuan Zhu, Roland Hasibeder, Sebastian Sippel, Shree R. S. Dangal, Stephen Sitch, Xiaoying Shi, Yingping Wang, Yiqi Luo, Yongwen Liu, and Shilong Piao
Biogeosciences, 15, 3421–3437, https://doi.org/10.5194/bg-15-3421-2018, https://doi.org/10.5194/bg-15-3421-2018, 2018
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Our results indicate that most ecosystem models do not capture the observed asymmetric responses under normal precipitation conditions, suggesting an overestimate of the drought effects and/or underestimate of the watering impacts on primary productivity, which may be the result of inadequate representation of key eco-hydrological processes. Collaboration between modelers and site investigators needs to be strengthened to improve the specific processes in ecosystem models in following studies.
Jacob A. Nelson, Nuno Carvalhais, Mirco Migliavacca, Markus Reichstein, and Martin Jung
Biogeosciences, 15, 2433–2447, https://doi.org/10.5194/bg-15-2433-2018, https://doi.org/10.5194/bg-15-2433-2018, 2018
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Plants have typical daily carbon uptake and water loss cycles. However, these cycles may change under periods of duress, such as water limitation. Here we identify two types of patterns in response to water limitations: a tendency to lose more water in the morning than afternoon and a decoupling of the carbon and water cycles. The findings show differences in responses by trees and grasses and suggest that morning shifts may be more efficient at gaining carbon per unit water used.
Jannis von Buttlar, Jakob Zscheischler, Anja Rammig, Sebastian Sippel, Markus Reichstein, Alexander Knohl, Martin Jung, Olaf Menzer, M. Altaf Arain, Nina Buchmann, Alessandro Cescatti, Damiano Gianelle, Gerard Kiely, Beverly E. Law, Vincenzo Magliulo, Hank Margolis, Harry McCaughey, Lutz Merbold, Mirco Migliavacca, Leonardo Montagnani, Walter Oechel, Marian Pavelka, Matthias Peichl, Serge Rambal, Antonio Raschi, Russell L. Scott, Francesco P. Vaccari, Eva van Gorsel, Andrej Varlagin, Georg Wohlfahrt, and Miguel D. Mahecha
Biogeosciences, 15, 1293–1318, https://doi.org/10.5194/bg-15-1293-2018, https://doi.org/10.5194/bg-15-1293-2018, 2018
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Our work systematically quantifies extreme heat and drought event impacts on gross primary productivity (GPP) and ecosystem respiration globally across a wide range of ecosystems. We show that heat extremes typically increased mainly respiration whereas drought decreased both fluxes. Combined heat and drought extremes had opposing effects offsetting each other for respiration, but there were also strong reductions in GPP and hence the strongest reductions in the ecosystems carbon sink capacity.
Wei Li, Philippe Ciais, Shushi Peng, Chao Yue, Yilong Wang, Martin Thurner, Sassan S. Saatchi, Almut Arneth, Valerio Avitabile, Nuno Carvalhais, Anna B. Harper, Etsushi Kato, Charles Koven, Yi Y. Liu, Julia E.M.S. Nabel, Yude Pan, Julia Pongratz, Benjamin Poulter, Thomas A. M. Pugh, Maurizio Santoro, Stephen Sitch, Benjamin D. Stocker, Nicolas Viovy, Andy Wiltshire, Rasoul Yousefpour, and Sönke Zaehle
Biogeosciences, 14, 5053–5067, https://doi.org/10.5194/bg-14-5053-2017, https://doi.org/10.5194/bg-14-5053-2017, 2017
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We used several observation-based biomass datasets to constrain the historical land-use change carbon emissions simulated by models. Compared to the range of the original modeled emissions (from 94 to 273 Pg C), the observationally constrained global cumulative emission estimate is 155 ± 50 Pg C (1σ Gaussian error) from 1901 to 2012. Our approach can also be applied to evaluate the LULCC impact of land-based climate mitigation policies.
Miguel D. Mahecha, Fabian Gans, Sebastian Sippel, Jonathan F. Donges, Thomas Kaminski, Stefan Metzger, Mirco Migliavacca, Dario Papale, Anja Rammig, and Jakob Zscheischler
Biogeosciences, 14, 4255–4277, https://doi.org/10.5194/bg-14-4255-2017, https://doi.org/10.5194/bg-14-4255-2017, 2017
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We investigate the likelihood of ecological in situ networks to detect and monitor the impact of extreme events in the terrestrial biosphere.
Jakob Zscheischler, Miguel D. Mahecha, Valerio Avitabile, Leonardo Calle, Nuno Carvalhais, Philippe Ciais, Fabian Gans, Nicolas Gruber, Jens Hartmann, Martin Herold, Kazuhito Ichii, Martin Jung, Peter Landschützer, Goulven G. Laruelle, Ronny Lauerwald, Dario Papale, Philippe Peylin, Benjamin Poulter, Deepak Ray, Pierre Regnier, Christian Rödenbeck, Rosa M. Roman-Cuesta, Christopher Schwalm, Gianluca Tramontana, Alexandra Tyukavina, Riccardo Valentini, Guido van der Werf, Tristram O. West, Julie E. Wolf, and Markus Reichstein
Biogeosciences, 14, 3685–3703, https://doi.org/10.5194/bg-14-3685-2017, https://doi.org/10.5194/bg-14-3685-2017, 2017
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Here we synthesize a wide range of global spatiotemporal observational data on carbon exchanges between the Earth surface and the atmosphere. A key challenge was to consistently combining observational products of terrestrial and aquatic surfaces. Our primary goal is to identify today’s key uncertainties and observational shortcomings that would need to be addressed in future measurement campaigns or expansions of in situ observatories.
Milan Flach, Fabian Gans, Alexander Brenning, Joachim Denzler, Markus Reichstein, Erik Rodner, Sebastian Bathiany, Paul Bodesheim, Yanira Guanche, Sebastian Sippel, and Miguel D. Mahecha
Earth Syst. Dynam., 8, 677–696, https://doi.org/10.5194/esd-8-677-2017, https://doi.org/10.5194/esd-8-677-2017, 2017
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Anomalies and extremes are often detected using univariate peak-over-threshold approaches in the geoscience community. The Earth system is highly multivariate. We compare eight multivariate anomaly detection algorithms and combinations of data preprocessing. We identify three anomaly detection algorithms that outperform univariate extreme event detection approaches. The workflows have the potential to reveal novelties in data. Remarks on their application to real Earth observations are provided.
Sven Boese, Martin Jung, Nuno Carvalhais, and Markus Reichstein
Biogeosciences, 14, 3015–3026, https://doi.org/10.5194/bg-14-3015-2017, https://doi.org/10.5194/bg-14-3015-2017, 2017
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For plants, the ratio of carbon uptake to water loss by transpiration is usually thought to depend on characteristic properties (their adaption to water scarcity) and the dryness of the atmosphere at any given moment. We show that, on the ecosystem scale, radiation has an independent effect on this ratio that had not been previously considered. When including this variable in models, predictions of transpiration improve considerably.
Sebastian Sippel, Jakob Zscheischler, Miguel D. Mahecha, Rene Orth, Markus Reichstein, Martha Vogel, and Sonia I. Seneviratne
Earth Syst. Dynam., 8, 387–403, https://doi.org/10.5194/esd-8-387-2017, https://doi.org/10.5194/esd-8-387-2017, 2017
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The present study (1) evaluates land–atmosphere coupling in the CMIP5 multi-model ensemble against an ensemble of benchmarking datasets and (2) refines the model ensemble using a land–atmosphere coupling diagnostic as constraint. Our study demonstrates that a considerable fraction of coupled climate models overemphasize warm-season
moisture-limitedclimate regimes in midlatitude regions. This leads to biases in daily-scale temperature extremes, which are alleviated in a constrained ensemble.
Sebastian Sippel, Jakob Zscheischler, Martin Heimann, Holger Lange, Miguel D. Mahecha, Geert Jan van Oldenborgh, Friederike E. L. Otto, and Markus Reichstein
Hydrol. Earth Syst. Sci., 21, 441–458, https://doi.org/10.5194/hess-21-441-2017, https://doi.org/10.5194/hess-21-441-2017, 2017
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The paper re-investigates the question whether observed precipitation extremes and annual totals have been increasing in the world's dry regions over the last 60 years. Despite recently postulated increasing trends, we demonstrate that large uncertainties prevail due to (1) the choice of dryness definition and (2) statistical data processing. In fact, we find only minor (and only some significant) increases if (1) dryness is based on aridity and (2) statistical artefacts are accounted for.
Gregor J. Schürmann, Thomas Kaminski, Christoph Köstler, Nuno Carvalhais, Michael Voßbeck, Jens Kattge, Ralf Giering, Christian Rödenbeck, Martin Heimann, and Sönke Zaehle
Geosci. Model Dev., 9, 2999–3026, https://doi.org/10.5194/gmd-9-2999-2016, https://doi.org/10.5194/gmd-9-2999-2016, 2016
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We describe the Max Planck Institute Carbon Cycle Data Assimilation System (MPI-CCDAS). The system improves the modelled carbon cycle of the terrestrial biosphere by systematically confronting (or assimilating) the model with observations of atmospheric CO2 and fractions of absorbed photosynthetically active radiation. Jointly assimilating both data streams outperforms the single-data stream experiments, thus showing the value of a multi-data stream assimilation.
Gianluca Tramontana, Martin Jung, Christopher R. Schwalm, Kazuhito Ichii, Gustau Camps-Valls, Botond Ráduly, Markus Reichstein, M. Altaf Arain, Alessandro Cescatti, Gerard Kiely, Lutz Merbold, Penelope Serrano-Ortiz, Sven Sickert, Sebastian Wolf, and Dario Papale
Biogeosciences, 13, 4291–4313, https://doi.org/10.5194/bg-13-4291-2016, https://doi.org/10.5194/bg-13-4291-2016, 2016
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We have evaluated 11 machine learning (ML) methods and two complementary drivers' setup to estimate the carbon dioxide (CO2) and energy exchanges between land ecosystems and atmosphere. Obtained results have shown high consistency among ML and high capability to estimate the spatial and seasonal variability of the target fluxes. The results were good for all the ecosystems, with limitations to the ones in the extreme environments (cold, hot) or less represented in the training data (tropics).
Matthew Wilkinson, Peter Crow, Edward L. Eaton, and James I. L. Morison
Biogeosciences, 13, 2367–2378, https://doi.org/10.5194/bg-13-2367-2016, https://doi.org/10.5194/bg-13-2367-2016, 2016
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We measured the exchange of carbon between the atmosphere and a managed oak plantation in the south-east of England for several years before and after a management thinning took place. We also measured changes in the structure of the forest canopy using aerial light detection and ranging (lidar). Whilst management thinning had a large discernible effect on the canopy structure, for example increasing canopy complexity, the effects of thinning on the carbon balance were not as evident.
D. G. Miralles, C. Jiménez, M. Jung, D. Michel, A. Ershadi, M. F. McCabe, M. Hirschi, B. Martens, A. J. Dolman, J. B. Fisher, Q. Mu, S. I. Seneviratne, E. F. Wood, and D. Fernández-Prieto
Hydrol. Earth Syst. Sci., 20, 823–842, https://doi.org/10.5194/hess-20-823-2016, https://doi.org/10.5194/hess-20-823-2016, 2016
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The WACMOS-ET project aims to advance the development of land evaporation estimates on global and regional scales. Evaluation of current evaporation data sets on the global scale showed that they manifest large dissimilarities during conditions of water stress and drought and deficiencies in the way evaporation is partitioned into several components. Different models perform better under different conditions, highlighting the potential for considering biome- or climate-specific model ensembles.
D. Michel, C. Jiménez, D. G. Miralles, M. Jung, M. Hirschi, A. Ershadi, B. Martens, M. F. McCabe, J. B. Fisher, Q. Mu, S. I. Seneviratne, E. F. Wood, and D. Fernández-Prieto
Hydrol. Earth Syst. Sci., 20, 803–822, https://doi.org/10.5194/hess-20-803-2016, https://doi.org/10.5194/hess-20-803-2016, 2016
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In this study a common reference input data set from satellite and in situ data is used to run four established evapotranspiration (ET) algorithms using sub-daily and daily input on a tower scale as a testbed for a global ET product. The PT-JPL model and GLEAM provide the best performance for satellite and in situ forcing as well as for the different temporal resolutions. PM-MOD and SEBS perform less well: the PM-MOD model generally underestimates, while SEBS generally overestimates ET.
S. Sippel, F. E. L. Otto, M. Forkel, M. R. Allen, B. P. Guillod, M. Heimann, M. Reichstein, S. I. Seneviratne, K. Thonicke, and M. D. Mahecha
Earth Syst. Dynam., 7, 71–88, https://doi.org/10.5194/esd-7-71-2016, https://doi.org/10.5194/esd-7-71-2016, 2016
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We introduce a novel technique to bias correct climate model output for impact simulations that preserves its physical consistency and multivariate structure. The methodology considerably improves the representation of extremes in climatic variables relative to conventional bias correction strategies. Illustrative simulations of biosphere–atmosphere carbon and water fluxes with a biosphere model (LPJmL) show that the novel technique can be usefully applied to drive climate impact models.
B. Di Mauro, F. Fava, P. Frattini, A. Camia, R. Colombo, and M. Migliavacca
Nonlin. Processes Geophys. Discuss., https://doi.org/10.5194/npgd-2-1553-2015, https://doi.org/10.5194/npgd-2-1553-2015, 2015
Preprint withdrawn
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In this paper, we analyse the probability distribution of wildfires burned area at European scale. We evaluate the performance of a land surface model using power law scaling as a benchmark. Our analysis suggests that only high latitude biomes are described by a power law distribution, and we relate this feature with the less impact of antrhopogenic activity. The benchmarking analysis showed that some refinements are needed in the model structure for reproducing emerging properties of wildfires
O. Perez-Priego, J. Guan, M. Rossini, F. Fava, T. Wutzler, G. Moreno, N. Carvalhais, A. Carrara, O. Kolle, T. Julitta, M. Schrumpf, M. Reichstein, and M. Migliavacca
Biogeosciences, 12, 6351–6367, https://doi.org/10.5194/bg-12-6351-2015, https://doi.org/10.5194/bg-12-6351-2015, 2015
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Sun-induced chlorophyll fluorescence and photochemical reflectance index revealed controls of climate and nutrient availability on photosynthesis (gross primary production, GPP). Meteo-driven models (MMs) were unable to describe nutrient-induced effects on GPP. Important implications can be derived from these results, and uncertainties in the prediction of global GPP still remain when MMs do not account for plant nutrient availability.
L. Wingate, J. Ogée, E. Cremonese, G. Filippa, T. Mizunuma, M. Migliavacca, C. Moisy, M. Wilkinson, C. Moureaux, G. Wohlfahrt, A. Hammerle, L. Hörtnagl, C. Gimeno, A. Porcar-Castell, M. Galvagno, T. Nakaji, J. Morison, O. Kolle, A. Knohl, W. Kutsch, P. Kolari, E. Nikinmaa, A. Ibrom, B. Gielen, W. Eugster, M. Balzarolo, D. Papale, K. Klumpp, B. Köstner, T. Grünwald, R. Joffre, J.-M. Ourcival, M. Hellstrom, A. Lindroth, C. George, B. Longdoz, B. Genty, J. Levula, B. Heinesch, M. Sprintsin, D. Yakir, T. Manise, D. Guyon, H. Ahrends, A. Plaza-Aguilar, J. H. Guan, and J. Grace
Biogeosciences, 12, 5995–6015, https://doi.org/10.5194/bg-12-5995-2015, https://doi.org/10.5194/bg-12-5995-2015, 2015
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The timing of plant development stages and their response to climate and management were investigated using a network of digital cameras installed across different European ecosystems. Using the relative red, green and blue content of images we showed that the green signal could be used to estimate the length of the growing season in broadleaf forests. We also developed a model that predicted the seasonal variations of camera RGB signals and how they relate to leaf pigment content and area well.
S. Hashimoto, N. Carvalhais, A. Ito, M. Migliavacca, K. Nishina, and M. Reichstein
Biogeosciences, 12, 4121–4132, https://doi.org/10.5194/bg-12-4121-2015, https://doi.org/10.5194/bg-12-4121-2015, 2015
A. Rammig, M. Wiedermann, J. F. Donges, F. Babst, W. von Bloh, D. Frank, K. Thonicke, and M. D. Mahecha
Biogeosciences, 12, 373–385, https://doi.org/10.5194/bg-12-373-2015, https://doi.org/10.5194/bg-12-373-2015, 2015
M. Forkel, N. Carvalhais, S. Schaphoff, W. v. Bloh, M. Migliavacca, M. Thurner, and K. Thonicke
Biogeosciences, 11, 7025–7050, https://doi.org/10.5194/bg-11-7025-2014, https://doi.org/10.5194/bg-11-7025-2014, 2014
X. Wu, F. Babst, P. Ciais, D. Frank, M. Reichstein, M. Wattenbach, C. Zang, and M. D. Mahecha
Biogeosciences, 11, 3057–3068, https://doi.org/10.5194/bg-11-3057-2014, https://doi.org/10.5194/bg-11-3057-2014, 2014
J. Zscheischler, M. Reichstein, S. Harmeling, A. Rammig, E. Tomelleri, and M. D. Mahecha
Biogeosciences, 11, 2909–2924, https://doi.org/10.5194/bg-11-2909-2014, https://doi.org/10.5194/bg-11-2909-2014, 2014
J. v. Buttlar, J. Zscheischler, and M. D. Mahecha
Nonlin. Processes Geophys., 21, 203–215, https://doi.org/10.5194/npg-21-203-2014, https://doi.org/10.5194/npg-21-203-2014, 2014
R. Valentini, A. Arneth, A. Bombelli, S. Castaldi, R. Cazzolla Gatti, F. Chevallier, P. Ciais, E. Grieco, J. Hartmann, M. Henry, R. A. Houghton, M. Jung, W. L. Kutsch, Y. Malhi, E. Mayorga, L. Merbold, G. Murray-Tortarolo, D. Papale, P. Peylin, B. Poulter, P. A. Raymond, M. Santini, S. Sitch, G. Vaglio Laurin, G. R. van der Werf, C. A. Williams, and R. J. Scholes
Biogeosciences, 11, 381–407, https://doi.org/10.5194/bg-11-381-2014, https://doi.org/10.5194/bg-11-381-2014, 2014
B. Badawy, C. Rödenbeck, M. Reichstein, N. Carvalhais, and M. Heimann
Biogeosciences, 10, 6485–6508, https://doi.org/10.5194/bg-10-6485-2013, https://doi.org/10.5194/bg-10-6485-2013, 2013
B. Mueller, M. Hirschi, C. Jimenez, P. Ciais, P. A. Dirmeyer, A. J. Dolman, J. B. Fisher, M. Jung, F. Ludwig, F. Maignan, D. G. Miralles, M. F. McCabe, M. Reichstein, J. Sheffield, K. Wang, E. F. Wood, Y. Zhang, and S. I. Seneviratne
Hydrol. Earth Syst. Sci., 17, 3707–3720, https://doi.org/10.5194/hess-17-3707-2013, https://doi.org/10.5194/hess-17-3707-2013, 2013
M. Wilkinson, E. L. Eaton, M. S. J. Broadmeadow, and J. I. L. Morison
Biogeosciences, 9, 5373–5389, https://doi.org/10.5194/bg-9-5373-2012, https://doi.org/10.5194/bg-9-5373-2012, 2012
Related subject area
Earth and space science informatics
Focal-TSMP: deep learning for vegetation health prediction and agricultural drought assessment from a regional climate simulation
Tomofast-x 2.0: an open-source parallel code for inversion of potential field data with topography using wavelet compression
Functional analysis of variance (ANOVA) for carbon flux estimates from remote sensing data
The 4D reconstruction of dynamic geological evolution processes for renowned geological features
Accelerating Lagrangian transport simulations on graphics processing units: performance optimizations of MPTRAC v2.6
Machine learning for numerical weather and climate modelling: a review
Overcoming barriers to enable convergence research by integrating ecological and climate sciences: the NCAR–NEON system Version 1
Ensemble of optimised machine learning algorithms for predicting surface soil moisture content at a global scale
Hazard assessment modeling and software development of earthquake-triggered landslides in the Sichuan–Yunnan area, China
A generalized spatial autoregressive neural network method for three-dimensional spatial interpolation
The Common Community Physics Package (CCPP) Framework v6
Causal deep learning models for studying the Earth system
A methodological framework for improving the performance of data-driven models: a case study for daily runoff prediction in the Maumee domain, USA
SHAFTS (v2022.3): a deep-learning-based Python package for simultaneous extraction of building height and footprint from sentinel imagery
Bayesian atmospheric correction over land: Sentinel-2/MSI and Landsat 8/OLI
Twenty-five years of the IPCC Data Distribution Centre at the DKRZ and the Reference Data Archive for CMIP data
Effectiveness and computational efficiency of absorbing boundary conditions for full-waveform inversion
LAND-SUITE V1.0: a suite of tools for statistically based landslide susceptibility zonation
Towards physics-inspired data-driven weather forecasting: integrating data assimilation with a deep spatial-transformer-based U-NET in a case study with ERA5
Fast infrared radiative transfer calculations using graphics processing units: JURASSIC-GPU v2.0
CSDMS: a community platform for numerical modeling of Earth surface processes
A new methodological framework for geophysical sensor combinations associated with machine learning algorithms to understand soil attributes
Model calibration using ESEm v1.1.0 – an open, scalable Earth system emulator
Turbidity maximum zone index: a novel model for remote extraction of the turbidity maximum zone in different estuaries
dh2loop 1.0: an open-source Python library for automated processing and classification of geological logs
Copula-based synthetic data augmentation for machine-learning emulators
Automated geological map deconstruction for 3D model construction using map2loop 1.0 and map2model 1.0
A spatially explicit approach to simulate urban heat mitigation with InVEST (v3.8.0)
S-SOM v1.0: a structural self-organizing map algorithm for weather typing
Using Shapley additive explanations to interpret extreme gradient boosting predictions of grassland degradation in Xilingol, China
Current status on the need for improved accessibility to climate models code
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A spatiotemporal weighted regression model (STWR v1.0) for analyzing local nonstationarity in space and time
A new end-to-end workflow for the Community Earth System Model (version 2.0) for the Coupled Model Intercomparison Project Phase 6 (CMIP6)
HyLands 1.0: a hybrid landscape evolution model to simulate the impact of landslides and landslide-derived sediment on landscape evolution
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Mohamad Hakam Shams Eddin and Juergen Gall
Geosci. Model Dev., 17, 2987–3023, https://doi.org/10.5194/gmd-17-2987-2024, https://doi.org/10.5194/gmd-17-2987-2024, 2024
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In this study, we use deep learning and a climate simulation to predict the vegetation health as it would be observed from satellites. We found that the developed model can help to identify regions with a high risk of agricultural drought. The main applications of this study are to estimate vegetation products for periods where no satellite data are available and to forecast the future vegetation response to climate change based on climate scenarios.
Vitaliy Ogarko, Kim Frankcombe, Taige Liu, Jeremie Giraud, Roland Martin, and Mark Jessell
Geosci. Model Dev., 17, 2325–2345, https://doi.org/10.5194/gmd-17-2325-2024, https://doi.org/10.5194/gmd-17-2325-2024, 2024
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We present a major release of the Tomofast-x open-source gravity and magnetic inversion code that is enhancing its performance and applicability for both industrial and academic studies. We focus on real-world mineral exploration scenarios, while offering flexibility for applications at regional scale or for crustal studies. The optimisation work described in this paper is fundamental to allowing more complete descriptions of the controls on magnetisation, including remanence.
Jonathan Hobbs, Matthias Katzfuss, Hai Nguyen, Vineet Yadav, and Junjie Liu
Geosci. Model Dev., 17, 1133–1151, https://doi.org/10.5194/gmd-17-1133-2024, https://doi.org/10.5194/gmd-17-1133-2024, 2024
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The cycling of carbon among the land, oceans, and atmosphere is a closely monitored process in the global climate system. These exchanges between the atmosphere and the surface can be quantified using a combination of atmospheric carbon dioxide observations and computer models. This study presents a statistical method for investigating the similarities and differences in the estimated surface–atmosphere carbon exchange when different computer model assumptions are invoked.
Jiateng Guo, Zhibin Liu, Xulei Wang, Lixin Wu, Shanjun Liu, and Yunqiang Li
Geosci. Model Dev., 17, 847–864, https://doi.org/10.5194/gmd-17-847-2024, https://doi.org/10.5194/gmd-17-847-2024, 2024
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This study proposes a 3D and temporally dynamic (4D) geological modeling method. Several simulation and actual cases show that the 4D spatial and temporal evolution of regional geological formations can be modeled easily using this method with smooth boundaries. The 4D modeling system can dynamically present the regional geological evolution process under the timeline, which will be helpful to the research and teaching on the formation of typical and complex geological features.
Lars Hoffmann, Kaveh Haghighi Mood, Andreas Herten, Markus Hrywniak, Jiri Kraus, Jan Clemens, and Mingzhao Liu
EGUsphere, https://doi.org/10.5194/egusphere-2023-2547, https://doi.org/10.5194/egusphere-2023-2547, 2024
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Lagrangian particle dispersion models are crucial for studying atmospheric transport, but they can be computationally intensive. To speed up simulations, the MPTRAC model was adapted for GPUs. Performance optimizations of data structures and memory alignment resulted in run-time improvements of up to 75 % on NVIDIA A100 GPUs for ERA5-based simulations with 100 million particles. These optimizations make the MPTRAC model well suited for upcoming HPC systems.
Catherine O. de Burgh-Day and Tennessee Leeuwenburg
Geosci. Model Dev., 16, 6433–6477, https://doi.org/10.5194/gmd-16-6433-2023, https://doi.org/10.5194/gmd-16-6433-2023, 2023
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Machine learning (ML) is an increasingly popular tool in the field of weather and climate modelling. While ML has been used in this space for a long time, it is only recently that ML approaches have become competitive with more traditional methods. In this review, we have summarized the use of ML in weather and climate modelling over time; provided an overview of key ML concepts, methodologies, and terms; and suggested promising avenues for further research.
Danica L. Lombardozzi, William R. Wieder, Negin Sobhani, Gordon B. Bonan, David Durden, Dawn Lenz, Michael SanClements, Samantha Weintraub-Leff, Edward Ayres, Christopher R. Florian, Kyla Dahlin, Sanjiv Kumar, Abigail L. S. Swann, Claire M. Zarakas, Charles Vardeman, and Valerio Pascucci
Geosci. Model Dev., 16, 5979–6000, https://doi.org/10.5194/gmd-16-5979-2023, https://doi.org/10.5194/gmd-16-5979-2023, 2023
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We present a novel cyberinfrastructure system that uses National Ecological Observatory Network measurements to run Community Terrestrial System Model point simulations in a containerized system. The simple interface and tutorials expand access to data and models used in Earth system research by removing technical barriers and facilitating research, educational opportunities, and community engagement. The NCAR–NEON system enables convergence of climate and ecological sciences.
Qianqian Han, Yijian Zeng, Lijie Zhang, Calimanut-Ionut Cira, Egor Prikaziuk, Ting Duan, Chao Wang, Brigitta Szabó, Salvatore Manfreda, Ruodan Zhuang, and Bob Su
Geosci. Model Dev., 16, 5825–5845, https://doi.org/10.5194/gmd-16-5825-2023, https://doi.org/10.5194/gmd-16-5825-2023, 2023
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Using machine learning, we estimated global surface soil moisture (SSM) to aid in understanding water, energy, and carbon exchange. Ensemble models outperformed individual algorithms in predicting SSM under different climates. The best-performing ensemble included K-neighbours Regressor, Random Forest Regressor, and Extreme Gradient Boosting. This is important for hydrological and climatological applications such as water cycle monitoring, irrigation management, and crop yield prediction.
Xiaoyi Shao, Siyuan Ma, and Chong Xu
Geosci. Model Dev., 16, 5113–5129, https://doi.org/10.5194/gmd-16-5113-2023, https://doi.org/10.5194/gmd-16-5113-2023, 2023
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Scientific understandings of the distribution of coseismic landslides, followed by emergency and medium- and long-term risk assessment, can reduce landslide risk. The aim of this study is to propose an improved three-stage spatial prediction strategy and develop corresponding hazard assessment software called Mat.LShazard V1.0, which provides a new application tool for coseismic landslide disaster prevention and mitigation in different stages.
Junda Zhan, Sensen Wu, Jin Qi, Jindi Zeng, Mengjiao Qin, Yuanyuan Wang, and Zhenhong Du
Geosci. Model Dev., 16, 2777–2794, https://doi.org/10.5194/gmd-16-2777-2023, https://doi.org/10.5194/gmd-16-2777-2023, 2023
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We develop a generalized spatial autoregressive neural network model used for three-dimensional spatial interpolation. Taking the different changing trend of geographic elements along various directions into consideration, the model defines spatial distance in a generalized way and integrates it into the process of spatial interpolation with the theories of spatial autoregression and neural network. Compared with traditional methods, the model achieves better performance and is more adaptable.
Dominikus Heinzeller, Ligia Bernardet, Grant Firl, Man Zhang, Xia Sun, and Michael Ek
Geosci. Model Dev., 16, 2235–2259, https://doi.org/10.5194/gmd-16-2235-2023, https://doi.org/10.5194/gmd-16-2235-2023, 2023
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The Common Community Physics Package is a collection of physical atmospheric parameterizations for use in Earth system models and a framework that couples the physics to a host model’s dynamical core. A primary goal for this effort is to facilitate research and development of physical parameterizations and physics–dynamics coupling methods while offering capabilities for numerical weather prediction operations, for example in the upcoming implementation of the Global Forecast System (GFS) v17.
Tobias Tesch, Stefan Kollet, and Jochen Garcke
Geosci. Model Dev., 16, 2149–2166, https://doi.org/10.5194/gmd-16-2149-2023, https://doi.org/10.5194/gmd-16-2149-2023, 2023
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A recent statistical approach for studying relations in the Earth system is to train deep learning (DL) models to predict Earth system variables given one or several others and use interpretable DL to analyze the relations learned by the models. Here, we propose to combine the approach with a theorem from causality research to ensure that the deep learning model learns causal rather than spurious relations. As an example, we apply the method to study soil-moisture–precipitation coupling.
Yao Hu, Chirantan Ghosh, and Siamak Malakpour-Estalaki
Geosci. Model Dev., 16, 1925–1936, https://doi.org/10.5194/gmd-16-1925-2023, https://doi.org/10.5194/gmd-16-1925-2023, 2023
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Data-driven models (DDMs) gain popularity in earth and environmental systems, thanks in large part to advancements in data collection techniques and artificial intelligence (AI). The performance of these models is determined by the underlying machine learning (ML) algorithms. In this study, we develop a framework to improve the model performance by optimizing ML algorithms and demonstrate the effectiveness of the framework using a DDM to predict edge-of-field runoff in the Maumee domain, USA.
Ruidong Li, Ting Sun, Fuqiang Tian, and Guang-Heng Ni
Geosci. Model Dev., 16, 751–778, https://doi.org/10.5194/gmd-16-751-2023, https://doi.org/10.5194/gmd-16-751-2023, 2023
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We developed SHAFTS (Simultaneous building Height And FootprinT extraction from Sentinel imagery), a multi-task deep-learning-based Python package, to estimate average building height and footprint from Sentinel imagery. Evaluation in 46 cities worldwide shows that SHAFTS achieves significant improvement over existing machine-learning-based methods.
Feng Yin, Philip E. Lewis, and Jose L. Gómez-Dans
Geosci. Model Dev., 15, 7933–7976, https://doi.org/10.5194/gmd-15-7933-2022, https://doi.org/10.5194/gmd-15-7933-2022, 2022
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The proposed SIAC atmospheric correction method provides consistent surface reflectance estimations from medium spatial-resolution satellites (Sentinel 2 and Landsat 8) with per-pixel uncertainty information. The outputs from SIAC have been validated against a wide range of ground measurements, and it shows that SIAC can provide accurate estimations of both surface reflectance and atmospheric parameters, with meaningful uncertainty information.
Martina Stockhause and Michael Lautenschlager
Geosci. Model Dev., 15, 6047–6058, https://doi.org/10.5194/gmd-15-6047-2022, https://doi.org/10.5194/gmd-15-6047-2022, 2022
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The Data Distribution Centre (DDC) of the Intergovernmental Panel on Climate Change (IPCC) celebrates its 25th anniversary in 2022. DDC Partner DKRZ has supported the IPCC Assessments and preserved the quality-assured, citable climate model data underpinning the Assessment Reports over these years over the long term. With the introduction of the IPCC FAIR Guidelines into the current AR6, the value of DDC services has been recognized. However, DDC sustainability remains unresolved.
Daiane Iglesia Dolci, Felipe A. G. Silva, Pedro S. Peixoto, and Ernani V. Volpe
Geosci. Model Dev., 15, 5857–5881, https://doi.org/10.5194/gmd-15-5857-2022, https://doi.org/10.5194/gmd-15-5857-2022, 2022
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We investigate and compare the theoretical and computational characteristics of several absorbing boundary conditions (ABCs) for the full-waveform inversion (FWI) problem. The different ABCs are implemented in an optimized computational framework called Devito. The computational efficiency and memory requirements of the ABC methods are evaluated in the forward and adjoint wave propagators, from simple to realistic velocity models.
Mauro Rossi, Txomin Bornaetxea, and Paola Reichenbach
Geosci. Model Dev., 15, 5651–5666, https://doi.org/10.5194/gmd-15-5651-2022, https://doi.org/10.5194/gmd-15-5651-2022, 2022
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LAND-SUITE is a software package designed to support landslide susceptibility zonation. The software integrates, extends, and completes LAND-SE (Rossi et al., 2010; Rossi and Reichenbach, 2016). The software is implemented in R, a free software environment for statistical computing and graphics, and gives expert users the possibility to perform easier, more flexible, and more informed statistically based landslide susceptibility applications and zonations.
Ashesh Chattopadhyay, Mustafa Mustafa, Pedram Hassanzadeh, Eviatar Bach, and Karthik Kashinath
Geosci. Model Dev., 15, 2221–2237, https://doi.org/10.5194/gmd-15-2221-2022, https://doi.org/10.5194/gmd-15-2221-2022, 2022
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There is growing interest in data-driven weather forecasting, i.e., to predict the weather by using a deep neural network that learns from the evolution of past atmospheric patterns. Here, we propose three components to add to the current data-driven weather forecast models to improve their performance. These components involve a feature that incorporates physics into the neural network, a method to add data assimilation, and an algorithm to use several different time intervals in the forecast.
Paul F. Baumeister and Lars Hoffmann
Geosci. Model Dev., 15, 1855–1874, https://doi.org/10.5194/gmd-15-1855-2022, https://doi.org/10.5194/gmd-15-1855-2022, 2022
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The efficiency of the numerical simulation of radiative transport is shown on modern server-class graphics cards (GPUs). The low-cost prefactor on GPUs compared to general-purpose processors (CPUs) enables future large retrieval campaigns for multi-channel data from infrared sounders aboard low-orbit satellites. The validated research software JURASSIC is available in the public domain.
Gregory E. Tucker, Eric W. H. Hutton, Mark D. Piper, Benjamin Campforts, Tian Gan, Katherine R. Barnhart, Albert J. Kettner, Irina Overeem, Scott D. Peckham, Lynn McCready, and Jaia Syvitski
Geosci. Model Dev., 15, 1413–1439, https://doi.org/10.5194/gmd-15-1413-2022, https://doi.org/10.5194/gmd-15-1413-2022, 2022
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Scientists use computer simulation models to understand how Earth surface processes work, including floods, landslides, soil erosion, river channel migration, ocean sedimentation, and coastal change. Research benefits when the software for simulation modeling is open, shared, and coordinated. The Community Surface Dynamics Modeling System (CSDMS) is a US-based facility that supports research by providing community support, computing tools and guidelines, and educational resources.
Danilo César de Mello, Gustavo Vieira Veloso, Marcos Guedes de Lana, Fellipe Alcantara de Oliveira Mello, Raul Roberto Poppiel, Diego Ribeiro Oquendo Cabrero, Luis Augusto Di Loreto Di Raimo, Carlos Ernesto Gonçalves Reynaud Schaefer, Elpídio Inácio Fernandes Filho, Emilson Pereira Leite, and José Alexandre Melo Demattê
Geosci. Model Dev., 15, 1219–1246, https://doi.org/10.5194/gmd-15-1219-2022, https://doi.org/10.5194/gmd-15-1219-2022, 2022
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We used soil parent material, terrain attributes, and geophysical data from the soil surface to test and compare different and unprecedented geophysical sensor combination, as well as different machine learning algorithms to model and predict several soil attributes. Also, we analyzed the importance of pedoenvironmental variables. The soil attributes were modeled throughout different machine learning algorithms and related to different geophysical sensor combinations.
Duncan Watson-Parris, Andrew Williams, Lucia Deaconu, and Philip Stier
Geosci. Model Dev., 14, 7659–7672, https://doi.org/10.5194/gmd-14-7659-2021, https://doi.org/10.5194/gmd-14-7659-2021, 2021
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The Earth System Emulator (ESEm) provides a fast and flexible framework for emulating a wide variety of Earth science datasets and tools for constraining (or tuning) models of any complexity. Three distinct use cases are presented that demonstrate the utility of ESEm and provide some insight into the use of machine learning for emulation in these different settings. The open-source Python package is freely available so that it might become a valuable tool for the community.
Chongyang Wang, Li Wang, Danni Wang, Dan Li, Chenghu Zhou, Hao Jiang, Qiong Zheng, Shuisen Chen, Kai Jia, Yangxiaoyue Liu, Ji Yang, Xia Zhou, and Yong Li
Geosci. Model Dev., 14, 6833–6846, https://doi.org/10.5194/gmd-14-6833-2021, https://doi.org/10.5194/gmd-14-6833-2021, 2021
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The turbidity maximum zone (TMZ) is a special phenomenon in estuaries worldwide. However, the extraction methods and criteria used to describe the TMZ vary significantly both spatially and temporally. This study proposes an new index, the turbidity maximum zone index, based on the corresponding relationship of total suspended solid concentration and Chl a concentration, which could better extract TMZs in different estuaries and on different dates.
Ranee Joshi, Kavitha Madaiah, Mark Jessell, Mark Lindsay, and Guillaume Pirot
Geosci. Model Dev., 14, 6711–6740, https://doi.org/10.5194/gmd-14-6711-2021, https://doi.org/10.5194/gmd-14-6711-2021, 2021
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We have developed a software that allows the user to extract and standardize drill hole information from legacy datasets and/or different drilling campaigns. It also provides functionality to upscale the lithological information. These functionalities were possible by developing thesauri to identify and group geological terminologies together.
David Meyer, Thomas Nagler, and Robin J. Hogan
Geosci. Model Dev., 14, 5205–5215, https://doi.org/10.5194/gmd-14-5205-2021, https://doi.org/10.5194/gmd-14-5205-2021, 2021
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A major limitation in training machine-learning emulators is often caused by the lack of data. This paper presents a cheap way to increase the size of training datasets using statistical techniques and thereby improve the performance of machine-learning emulators.
Mark Jessell, Vitaliy Ogarko, Yohan de Rose, Mark Lindsay, Ranee Joshi, Agnieszka Piechocka, Lachlan Grose, Miguel de la Varga, Laurent Ailleres, and Guillaume Pirot
Geosci. Model Dev., 14, 5063–5092, https://doi.org/10.5194/gmd-14-5063-2021, https://doi.org/10.5194/gmd-14-5063-2021, 2021
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We have developed software that allows the user to extract sufficient information from unmodified digital maps and associated datasets that we are able to use to automatically build 3D geological models. By automating the process we are able to remove human bias from the procedure, which makes the workflow reproducible.
Martí Bosch, Maxence Locatelli, Perrine Hamel, Roy P. Remme, Jérôme Chenal, and Stéphane Joost
Geosci. Model Dev., 14, 3521–3537, https://doi.org/10.5194/gmd-14-3521-2021, https://doi.org/10.5194/gmd-14-3521-2021, 2021
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The article presents a novel approach to simulate urban heat mitigation from land use/land cover data based on three biophysical mechanisms: tree shade, evapotranspiration and albedo. An automated procedure is proposed to calibrate the model parameters to best fit temperature observations from monitoring stations. A case study in Lausanne, Switzerland, shows that the approach outperforms regressions based on satellite data and provides valuable insights into design heat mitigation policies.
Quang-Van Doan, Hiroyuki Kusaka, Takuto Sato, and Fei Chen
Geosci. Model Dev., 14, 2097–2111, https://doi.org/10.5194/gmd-14-2097-2021, https://doi.org/10.5194/gmd-14-2097-2021, 2021
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This study proposes a novel structural self-organizing map (S-SOM) algorithm. The superiority of S-SOM is that it can better recognize the difference (or similarity) among spatial (or temporal) data used for training and thus improve the clustering quality compared to traditional SOM algorithms.
Batunacun, Ralf Wieland, Tobia Lakes, and Claas Nendel
Geosci. Model Dev., 14, 1493–1510, https://doi.org/10.5194/gmd-14-1493-2021, https://doi.org/10.5194/gmd-14-1493-2021, 2021
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Extreme gradient boosting (XGBoost) can provide alternative insights that conventional land-use models are unable to generate. Shapley additive explanations (SHAP) can interpret the results of the purely data-driven approach. XGBoost achieved similar and robust simulation results. SHAP values were useful for analysing the complex relationship between the different drivers of grassland degradation.
Juan A. Añel, Michael García-Rodríguez, and Javier Rodeiro
Geosci. Model Dev., 14, 923–934, https://doi.org/10.5194/gmd-14-923-2021, https://doi.org/10.5194/gmd-14-923-2021, 2021
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This work shows that it continues to be hard, if not impossible, to obtain some of the most used climate models worldwide. We reach this conclusion through a systematic study and encourage all development teams and research centres to make public the models they use to produce scientific results.
Prabhat, Karthik Kashinath, Mayur Mudigonda, Sol Kim, Lukas Kapp-Schwoerer, Andre Graubner, Ege Karaismailoglu, Leo von Kleist, Thorsten Kurth, Annette Greiner, Ankur Mahesh, Kevin Yang, Colby Lewis, Jiayi Chen, Andrew Lou, Sathyavat Chandran, Ben Toms, Will Chapman, Katherine Dagon, Christine A. Shields, Travis O'Brien, Michael Wehner, and William Collins
Geosci. Model Dev., 14, 107–124, https://doi.org/10.5194/gmd-14-107-2021, https://doi.org/10.5194/gmd-14-107-2021, 2021
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Detecting extreme weather events is a crucial step in understanding how they change due to climate change. Deep learning (DL) is remarkable at pattern recognition; however, it works best only when labeled datasets are available. We create
ClimateNet– an expert-labeled curated dataset – to train a DL model for detecting weather events and predicting changes in extreme precipitation. This work paves the way for DL-based automated, high-fidelity, and highly precise analytics of climate data.
Xiang Que, Xiaogang Ma, Chao Ma, and Qiyu Chen
Geosci. Model Dev., 13, 6149–6164, https://doi.org/10.5194/gmd-13-6149-2020, https://doi.org/10.5194/gmd-13-6149-2020, 2020
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This paper presents a spatiotemporal weighted regression (STWR) model for exploring nonstationary spatiotemporal processes in nature and socioeconomics. A value change rate is introduced in the temporal kernel, which presents significant model fitting and accuracy in both simulated and real-world data. STWR fully incorporates observed data in the past and outperforms geographic temporal weighted regression (GTWR) and geographic weighted regression (GWR) models in several experiments.
Sheri Mickelson, Alice Bertini, Gary Strand, Kevin Paul, Eric Nienhouse, John Dennis, and Mariana Vertenstein
Geosci. Model Dev., 13, 5567–5581, https://doi.org/10.5194/gmd-13-5567-2020, https://doi.org/10.5194/gmd-13-5567-2020, 2020
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Every generation of MIP exercises introduces new layers of complexity and an exponential growth in the amount of data requested. CMIP6 required us to develop a new tool chain and forced us to change our methodologies. The new methods discussed in this paper provided us with an 18 times faster speedup over our existing methods. This allowed us to meet our deadlines and we were able to publish more than half a million data sets on the Earth System Grid Federation (ESGF) for the CMIP6 project.
Benjamin Campforts, Charles M. Shobe, Philippe Steer, Matthias Vanmaercke, Dimitri Lague, and Jean Braun
Geosci. Model Dev., 13, 3863–3886, https://doi.org/10.5194/gmd-13-3863-2020, https://doi.org/10.5194/gmd-13-3863-2020, 2020
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Landslides shape the Earth’s surface and are a dominant source of terrestrial sediment. Rivers, then, act as conveyor belts evacuating landslide-produced sediment. Understanding the interaction among rivers and landslides is important to predict the Earth’s surface response to past and future environmental changes and for mitigating natural hazards. We develop HyLands, a new numerical model that provides a toolbox to explore how landslides and rivers interact over several timescales.
Jorge Vicent, Jochem Verrelst, Neus Sabater, Luis Alonso, Juan Pablo Rivera-Caicedo, Luca Martino, Jordi Muñoz-Marí, and José Moreno
Geosci. Model Dev., 13, 1945–1957, https://doi.org/10.5194/gmd-13-1945-2020, https://doi.org/10.5194/gmd-13-1945-2020, 2020
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The modeling of light propagation through the atmosphere is key to process satellite images and to understand atmospheric processes. However, existing atmospheric models can be complex to use in practical applications. Here we aim at providing a new software tool to facilitate using advanced models and to generate large databases of simulated data. As a test case, we use this tool to analyze differences between several atmospheric models, showing the capabilities of this open-source tool.
Jiali Wang, Prasanna Balaprakash, and Rao Kotamarthi
Geosci. Model Dev., 12, 4261–4274, https://doi.org/10.5194/gmd-12-4261-2019, https://doi.org/10.5194/gmd-12-4261-2019, 2019
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Parameterizations are frequently used in models representing physical phenomena and are often the computationally expensive portions of the code. Using model output from simulations performed using a weather model, we train deep neural networks to provide an accurate alternative to a physics-based parameterization. We demonstrate that a domain-aware deep neural network can successfully simulate the entire diurnal cycle of the boundary layer physics and the results are transferable.
Gianandrea Mannarini and Lorenzo Carelli
Geosci. Model Dev., 12, 3449–3480, https://doi.org/10.5194/gmd-12-3449-2019, https://doi.org/10.5194/gmd-12-3449-2019, 2019
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The VISIR ship-routing model is updated in order to deal with ocean currents.
The optimal tracks we computed through VISIR in the Atlantic ocean show great seasonal and regional variability, following a variable influence of surface gravity waves and currents. We assess how these tracks contribute to voyage energy-efficiency gains through a standard indicator (EEOI) of the International Maritime Organization. Also, the new model features are validated against an exact analytical benchmark.
Grzegorz Muszynski, Karthik Kashinath, Vitaliy Kurlin, Michael Wehner, and Prabhat
Geosci. Model Dev., 12, 613–628, https://doi.org/10.5194/gmd-12-613-2019, https://doi.org/10.5194/gmd-12-613-2019, 2019
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We present the automated method for recognizing atmospheric rivers in climate data, i.e., climate model output and reanalysis product. The method is based on topological data analysis and machine learning, both of which are powerful tools that the climate science community often does not use. An advantage of the proposed method is that it is free of selection of subjective threshold conditions on a physical variable. This method is also suitable for rapidly analyzing large amounts of data.
Christina Papagiannopoulou, Diego G. Miralles, Matthias Demuzere, Niko E. C. Verhoest, and Willem Waegeman
Geosci. Model Dev., 11, 4139–4153, https://doi.org/10.5194/gmd-11-4139-2018, https://doi.org/10.5194/gmd-11-4139-2018, 2018
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Common global land cover and climate classifications are based on vegetation–climatic characteristics derived from observational data, ignoring the interaction between the local climate and biome. Here, we model the interplay between vegetation and local climate by discovering spatial relationships among different locations. The resulting global
hydro-climatic biomescorrespond to regions of coherent climate–vegetation interactions that agree well with traditional global land cover maps.
Wendy Sharples, Ilya Zhukov, Markus Geimer, Klaus Goergen, Sebastian Luehrs, Thomas Breuer, Bibi Naz, Ketan Kulkarni, Slavko Brdar, and Stefan Kollet
Geosci. Model Dev., 11, 2875–2895, https://doi.org/10.5194/gmd-11-2875-2018, https://doi.org/10.5194/gmd-11-2875-2018, 2018
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Next-generation geoscientific models are based on complex model implementations and workflows. Next-generation HPC systems require new programming paradigms and code optimization. In order to meet the challenge of running complex simulations on new massively parallel HPC systems, we developed a run control framework that facilitates code portability, code profiling, and provenance tracking to reduce both the duration and the cost of code migration and development, while ensuring reproducibility.
Daojun Zhang, Na Ren, and Xianhui Hou
Geosci. Model Dev., 11, 2525–2539, https://doi.org/10.5194/gmd-11-2525-2018, https://doi.org/10.5194/gmd-11-2525-2018, 2018
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Geographically weighted regression is a widely used method to deal with spatial heterogeneity, which is common in geostatistics. However, most existing software does not support logistic regression and cannot deal with missing data, which exist extensively in mineral prospectivity mapping. This work generalized logistic regression to spatial statistics based on a spatially weighted technique. The new model also supports an anisotropic local window, which is another innovative point.
Thomas Block, Sabine Embacher, Christopher J. Merchant, and Craig Donlon
Geosci. Model Dev., 11, 2419–2427, https://doi.org/10.5194/gmd-11-2419-2018, https://doi.org/10.5194/gmd-11-2419-2018, 2018
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For calibration and validation purposes it is necessary to detect simultaneous data acquisitions from different spaceborne platforms. We present an algorithm and a software system which implements a general approach to resolve this problem. The multisensor matchup system (MMS) can detect simultaneous acquisitions in a large dataset (> 100 TB) and extract data for matching locations for further analysis. The MMS implements a flexible software infrastructure and allows for high parallelization.
David Hassell, Jonathan Gregory, Jon Blower, Bryan N. Lawrence, and Karl E. Taylor
Geosci. Model Dev., 10, 4619–4646, https://doi.org/10.5194/gmd-10-4619-2017, https://doi.org/10.5194/gmd-10-4619-2017, 2017
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We present a formal data model for version 1.6 of the CF (Climate and Forecast) metadata conventions that provide a description of the physical meaning of geoscientific data and their spatial and temporal properties. We describe the CF conventions and how they lead to our CF data model, and compare it other data models for storing data and metadata. We present cf-python version 2.1: a software implementation of the CF data model capable of manipulating any CF-compliant dataset.
Xinqiao Duan, Lin Li, Haihong Zhu, and Shen Ying
Geosci. Model Dev., 10, 239–253, https://doi.org/10.5194/gmd-10-239-2017, https://doi.org/10.5194/gmd-10-239-2017, 2017
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This article proposes an optimized transformation for topographic datasets. The resulting topographic grid exhibits good surface approximation and quasi-uniform high-quality. Both features of the processed topography build a concrete base from which improved endogenous or exogenous parameters can be derived, and makes it suitable for Earth and environmental simulations.
Venkatramani Balaji, Eric Maisonnave, Niki Zadeh, Bryan N. Lawrence, Joachim Biercamp, Uwe Fladrich, Giovanni Aloisio, Rusty Benson, Arnaud Caubel, Jeffrey Durachta, Marie-Alice Foujols, Grenville Lister, Silvia Mocavero, Seth Underwood, and Garrett Wright
Geosci. Model Dev., 10, 19–34, https://doi.org/10.5194/gmd-10-19-2017, https://doi.org/10.5194/gmd-10-19-2017, 2017
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Climate models are among the most computationally expensive scientific applications in the world. We present a set of measures of computational performance that can be used to compare models that are independent of underlying hardware and the model formulation. They are easy to collect and reflect performance actually achieved in practice. We are preparing a systematic effort to collect these metrics for the world's climate models during CMIP6, the next Climate Model Intercomparison Project.
Massimiliano Alvioli, Ivan Marchesini, Paola Reichenbach, Mauro Rossi, Francesca Ardizzone, Federica Fiorucci, and Fausto Guzzetti
Geosci. Model Dev., 9, 3975–3991, https://doi.org/10.5194/gmd-9-3975-2016, https://doi.org/10.5194/gmd-9-3975-2016, 2016
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Slope units are morphological mapping units bounded by drainage and divide lines that maximize within-unit homogeneity and between-unit heterogeneity. We use r.slopeunits, a software for the automatic delination of slope units. We outline an objective procedure to optimize the software input parameters for landslide susceptibility (LS) zonation. Optimization is achieved by maximizing an objective function that simultaneously evaluates terrain aspect segmentation quality and LS model performance.
Duncan Watson-Parris, Nick Schutgens, Nicholas Cook, Zak Kipling, Philip Kershaw, Edward Gryspeerdt, Bryan Lawrence, and Philip Stier
Geosci. Model Dev., 9, 3093–3110, https://doi.org/10.5194/gmd-9-3093-2016, https://doi.org/10.5194/gmd-9-3093-2016, 2016
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In this paper we describe CIS, a new command line tool for the easy visualization, analysis and comparison of a wide variety of gridded and ungridded data sets used in Earth sciences. Users can now use a single tool to not only view plots of satellite, aircraft, station or model data, but also bring them onto the same spatio-temporal sampling. This allows robust, quantitative comparisons to be made easily. CIS is an open-source project and welcomes input from the community.
Benjamin F. Jamroz and Robert Klöfkorn
Geosci. Model Dev., 9, 2881–2892, https://doi.org/10.5194/gmd-9-2881-2016, https://doi.org/10.5194/gmd-9-2881-2016, 2016
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The scalability of computational applications on current and next-generation supercomputers is increasingly limited by the cost of inter-process communication. We implement communication hiding data exchange in the High-Order Methods Modeling Environment (HOMME) for the time integration of the hydrostatic fluid equations using both the spectral-element and discontinuous Galerkin methods. The presented approach produces significant performance and scalability gains in large-scale simulations.
T. Fischer, D. Naumov, S. Sattler, O. Kolditz, and M. Walther
Geosci. Model Dev., 8, 3681–3694, https://doi.org/10.5194/gmd-8-3681-2015, https://doi.org/10.5194/gmd-8-3681-2015, 2015
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We present a workflow to convert geological models into the open-source VTU format for usage in numerical simulation models. Tackling relevant scientific questions or engineering tasks often involves multidisciplinary approaches. Conversion workflows are needed between the diverse tools of the various disciplines. Our approach offers an open-source, platform-independent, robust, and comprehensible method that is potentially useful for a multitude of similar environmental studies.
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Short summary
Accurate representation of land-atmosphere carbon fluxes is essential for future climate projections, although some of the responses of CO2 fluxes to climate often remain uncertain. The increase in available data allows for new approaches in their modelling. We automatically developed models for ecosystem and soil carbon respiration using a machine learning approach. When compared with established respiration models, we found that they are better in prediction as well as offering new insights.
Accurate representation of land-atmosphere carbon fluxes is essential for future climate...
