Model experiment description paper 15 Jun 2016
Model experiment description paper | 15 Jun 2016
Determining lake surface water temperatures worldwide using a tuned one-dimensional lake model (FLake, v1)
Aisling Layden et al.
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Paul Poli, Marc Lucas, Anne O'Carroll, Marc Le Menn, Arnaud David, Gary K. Corlett, Pierre Blouch, David Meldrum, Christopher J. Merchant, Mathieu Belbeoch, and Kai Herklotz
Ocean Sci., 15, 199–214, https://doi.org/10.5194/os-15-199-2019, https://doi.org/10.5194/os-15-199-2019, 2019
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Earth observation satellites routinely monitor sea-surface temperature. However, they require in situ references for calibration and validation. To support this step, drifting buoys carrying sensors with improved calibration were deployed. This paper finds that sea state and immersion depth are important to better understand the buoy measurements. A new drifting buoy was designed as a result, in the framework of the European Union Copernicus program, with an accuracy found to be within 0.01 °C.
Thomas Block, Sabine Embacher, Christopher J. Merchant, and Craig Donlon
Geosci. Model Dev., 11, 2419–2427, https://doi.org/10.5194/gmd-11-2419-2018, https://doi.org/10.5194/gmd-11-2419-2018, 2018
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For calibration and validation purposes it is necessary to detect simultaneous data acquisitions from different spaceborne platforms. We present an algorithm and a software system which implements a general approach to resolve this problem. The multisensor matchup system (MMS) can detect simultaneous acquisitions in a large dataset (> 100 TB) and extract data for matching locations for further analysis. The MMS implements a flexible software infrastructure and allows for high parallelization.
Christopher J. Merchant, Frank Paul, Thomas Popp, Michael Ablain, Sophie Bontemps, Pierre Defourny, Rainer Hollmann, Thomas Lavergne, Alexandra Laeng, Gerrit de Leeuw, Jonathan Mittaz, Caroline Poulsen, Adam C. Povey, Max Reuter, Shubha Sathyendranath, Stein Sandven, Viktoria F. Sofieva, and Wolfgang Wagner
Earth Syst. Sci. Data, 9, 511–527, https://doi.org/10.5194/essd-9-511-2017, https://doi.org/10.5194/essd-9-511-2017, 2017
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Climate data records (CDRs) contain data describing Earth's climate and should address uncertainty in the data to communicate what is known about climate variability or change and what range of doubt exists. This paper discusses good practice for including uncertainty information in CDRs for the essential climate variables (ECVs) derived from satellite data. Recommendations emerge from the shared experience of diverse ECV projects within the European Space Agency Climate Change Initiative.
C. J. Merchant, S. Matthiesen, N. A. Rayner, J. J. Remedios, P. D. Jones, F. Olesen, B. Trewin, P. W. Thorne, R. Auchmann, G. K. Corlett, P. C. Guillevic, and G. C. Hulley
Geosci. Instrum. Method. Data Syst., 2, 305–321, https://doi.org/10.5194/gi-2-305-2013, https://doi.org/10.5194/gi-2-305-2013, 2013
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Revised manuscript accepted for GMD
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Colin Grudzien, Marc Bocquet, and Alberto Carrassi
Geosci. Model Dev., 13, 1903–1924, https://doi.org/10.5194/gmd-13-1903-2020, https://doi.org/10.5194/gmd-13-1903-2020, 2020
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Theo Baracchini, Philip Y. Chu, Jonas Šukys, Gian Lieberherr, Stefan Wunderle, Alfred Wüest, and Damien Bouffard
Geosci. Model Dev., 13, 1267–1284, https://doi.org/10.5194/gmd-13-1267-2020, https://doi.org/10.5194/gmd-13-1267-2020, 2020
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Lake physical processes occur at a wide range of spatiotemporal scales. 3D hydrodynamic lake models are the only information source capable of solving those scales; however, they still need observations to be calibrated and to constrain their uncertainties. The optimal combination of a 3D hydrodynamic model, in situ measurements, and remote sensing observations is achieved through data assimilation. Here we present a complete data assimilation experiment for lakes using open-source tools.
Negin Nazarian, E. Scott Krayenhoff, and Alberto Martilli
Geosci. Model Dev., 13, 937–953, https://doi.org/10.5194/gmd-13-937-2020, https://doi.org/10.5194/gmd-13-937-2020, 2020
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Thomas H. Gibson, Lawrence Mitchell, David A. Ham, and Colin J. Cotter
Geosci. Model Dev., 13, 735–761, https://doi.org/10.5194/gmd-13-735-2020, https://doi.org/10.5194/gmd-13-735-2020, 2020
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Galerkin finite element discretizations for atmospheric modeling often require the solution of ill-conditioned, saddle point equations which can be efficiently solved using a hybridized method. By extending Firedrake's domain-specific abstraction, we provide a mechanism for the rapid implementation of hybridization methods for a wide class of methods. In this paper, we show that hybridization is an effective alternative to traditional block solvers for simulating geophysical flows.
Murat Gunduz, Emin Özsoy, and Robinson Hordoir
Geosci. Model Dev., 13, 121–138, https://doi.org/10.5194/gmd-13-121-2020, https://doi.org/10.5194/gmd-13-121-2020, 2020
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Ewan Pinnington, Tristan Quaife, Amos Lawless, Karina Williams, Tim Arkebauer, and Dave Scoby
Geosci. Model Dev., 13, 55–69, https://doi.org/10.5194/gmd-13-55-2020, https://doi.org/10.5194/gmd-13-55-2020, 2020
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Xavier Delaunay, Aurélie Courtois, and Flavien Gouillon
Geosci. Model Dev., 12, 4099–4113, https://doi.org/10.5194/gmd-12-4099-2019, https://doi.org/10.5194/gmd-12-4099-2019, 2019
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This research aimed at finding a compression method suitable for the ground processing of CFOSAT and SWOT satellite datasets. Lossless algorithms did not allow enough compression. That is why we began studying lossy alternatives. This work introduces the digit rounding algorithm which reduces the volume of scientific datasets keeping only the significant digits in each sample value. The number of digits kept is relative to each sample so that both small and high values are similarly preserved.
Richard Scalzo, David Kohn, Hugo Olierook, Gregory Houseman, Rohitash Chandra, Mark Girolami, and Sally Cripps
Geosci. Model Dev., 12, 2941–2960, https://doi.org/10.5194/gmd-12-2941-2019, https://doi.org/10.5194/gmd-12-2941-2019, 2019
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Producing 3-D models of structures under the Earth's surface based on sensor data is a key problem in geophysics (for example, in mining exploration). There may be multiple models that explain the data well. We use the open-source Obsidian software to look at the efficiency of different methods for exploring the model space and attaching probabilities to models, leading to less biased results and a better idea of how sensor data interact with geological assumptions.
Anna Denvil-Sommer, Marion Gehlen, Mathieu Vrac, and Carlos Mejia
Geosci. Model Dev., 12, 2091–2105, https://doi.org/10.5194/gmd-12-2091-2019, https://doi.org/10.5194/gmd-12-2091-2019, 2019
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This work is dedicated to a new model that reconstructs the surface ocean partial pressure of carbon dioxide (pCO2) over the global ocean on a monthly 1°×1° grid. The model is based on a feed-forward neural network and represents the nonlinear relationships between pCO2 and the ocean drivers. Reconstructed pCO2 has a satisfying accuracy compared to independent observational data and shows a good agreement in seasonal and interannual variability with three existing mapping methods.
Alexey Androsov, Vera Fofonova, Ivan Kuznetsov, Sergey Danilov, Natalja Rakowsky, Sven Harig, Holger Brix, and Karen Helen Wiltshire
Geosci. Model Dev., 12, 1009–1028, https://doi.org/10.5194/gmd-12-1009-2019, https://doi.org/10.5194/gmd-12-1009-2019, 2019
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We present a description of a coastal ocean circulation model designed to work on variable-resolution meshes made of triangular and quadrilateral cells. This hybrid mesh functionality allows for higher numerical performance and less dissipative solutions.
Kai-Lan Chang, Owen R. Cooper, J. Jason West, Marc L. Serre, Martin G. Schultz, Meiyun Lin, Virginie Marécal, Béatrice Josse, Makoto Deushi, Kengo Sudo, Junhua Liu, and Christoph A. Keller
Geosci. Model Dev., 12, 955–978, https://doi.org/10.5194/gmd-12-955-2019, https://doi.org/10.5194/gmd-12-955-2019, 2019
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We developed a new method for combining surface ozone observations from thousands of monitoring sites worldwide with the output from multiple atmospheric chemistry models. The result is a global surface ozone distribution with greater accuracy than any single model can achieve. We focused on an ozone metric relevant to human mortality caused by long-term ozone exposure. Our method can be applied to studies that quantify the impacts of ozone on human health and mortality.
Colin M. Zarzycki, Christiane Jablonowski, James Kent, Peter H. Lauritzen, Ramachandran Nair, Kevin A. Reed, Paul A. Ullrich, David M. Hall, Mark A. Taylor, Don Dazlich, Ross Heikes, Celal Konor, David Randall, Xi Chen, Lucas Harris, Marco Giorgetta, Daniel Reinert, Christian Kühnlein, Robert Walko, Vivian Lee, Abdessamad Qaddouri, Monique Tanguay, Hiroaki Miura, Tomoki Ohno, Ryuji Yoshida, Sang-Hun Park, Joseph B. Klemp, and William C. Skamarock
Geosci. Model Dev., 12, 879–892, https://doi.org/10.5194/gmd-12-879-2019, https://doi.org/10.5194/gmd-12-879-2019, 2019
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We summarize the results of the Dynamical Core Model Intercomparison Project's idealized supercell test case. Supercells are storm-scale weather phenomena that are a key target for next-generation, non-hydrostatic weather prediction models. We show that the dynamical cores of most global numerical models converge between approximately 1 and 0.5 km grid spacing for this test, although differences in final solution exist, particularly due to differing grid discretizations and numerical diffusion.
Christian Kühnlein, Willem Deconinck, Rupert Klein, Sylvie Malardel, Zbigniew P. Piotrowski, Piotr K. Smolarkiewicz, Joanna Szmelter, and Nils P. Wedi
Geosci. Model Dev., 12, 651–676, https://doi.org/10.5194/gmd-12-651-2019, https://doi.org/10.5194/gmd-12-651-2019, 2019
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We present a novel finite-volume dynamical core formulation considered for future numerical weather prediction at ECMWF. We demonstrate that this formulation can be competitive in terms of solution quality and computational efficiency to the proven spectral-transform dynamical core formulation currently operational at ECMWF, while providing a local, more scalable discretization, conservative and monotone advective transport, and flexible meshes.
Ramadan Abdelaziz, Broder J. Merkel, Mauricio Zambrano-Bigiarini, and Sreejesh Nair
Geosci. Model Dev., 12, 167–177, https://doi.org/10.5194/gmd-12-167-2019, https://doi.org/10.5194/gmd-12-167-2019, 2019
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The paper presents a robust tool to estimate the thermodynamic surface complexation parameter for the sorption of uranium(VI) onto quartz surfaces. The optimization package hydroPSO R is coupled with the geochemical speciation code PHREEQC. hydroPSO used the m parameter estimation tool for geochemical modeling with PHREEQC. Coupled hydroPSO with PHREEQC proved to be a robust tool to estimate surface complexation constants for uranium(VI) species on quartz.
Miguel de la Varga, Alexander Schaaf, and Florian Wellmann
Geosci. Model Dev., 12, 1–32, https://doi.org/10.5194/gmd-12-1-2019, https://doi.org/10.5194/gmd-12-1-2019, 2019
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GemPy is an open-source Python-based 3-D structural geological modeling software, which allows the implicit (i.e. automatic) creation of complex geological models from interface and orientation data. GemPy is implemented in the programming language Python, making use of a highly efficient underlying library, Theano, for efficient code generation that performs automatic differentiation. This enables the link to probabilistic machine-learning and Bayesian inference frameworks.
Tianfeng Chai, Ariel Stein, and Fong Ngan
Geosci. Model Dev., 11, 5135–5148, https://doi.org/10.5194/gmd-11-5135-2018, https://doi.org/10.5194/gmd-11-5135-2018, 2018
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While model predictions depend on release parameters, model uncertainties in inverse modeling should also vary with the source terms. In this paper, model uncertainties that will change with the source terms are introduced in a weak-constraint inverse modeling system. Tests using HYSPLIT model and CAPTEX observations show that adding such model uncertainty terms improves release rate estimates. A cost function normalization scheme introduced to avoid spurious solutions proves to be effective.
Christopher J. Skinner, Tom J. Coulthard, Wolfgang Schwanghart, Marco J. Van De Wiel, and Greg Hancock
Geosci. Model Dev., 11, 4873–4888, https://doi.org/10.5194/gmd-11-4873-2018, https://doi.org/10.5194/gmd-11-4873-2018, 2018
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Landscape evolution models are computer models used to understand how the Earth’s surface changes over time. Although designed to look at broad changes over very long time periods, they could potentially be used to predict smaller changes over shorter periods. However, to do this we need to better understand how the models respond to changes in their set-up – i.e. their behaviour. This work presents a method which can be applied to these models in order to better understand their behaviour.
Gary L. Russell, David H. Rind, and Jeffrey Jonas
Geosci. Model Dev., 11, 4637–4656, https://doi.org/10.5194/gmd-11-4637-2018, https://doi.org/10.5194/gmd-11-4637-2018, 2018
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This paper presents the Fortran 90 source code for one-layer model GISS:IB on an icosahedral grid. The model solves the shallow water equations on the sphere using three symmetric horizontal components of angular momentum instead of velocity. One-layer shallow water models are a basic building block used in complex global weather and climate models.
Istvan Z. Reguly, Daniel Giles, Devaraj Gopinathan, Laure Quivy, Joakim H. Beck, Michael B. Giles, Serge Guillas, and Frederic Dias
Geosci. Model Dev., 11, 4621–4635, https://doi.org/10.5194/gmd-11-4621-2018, https://doi.org/10.5194/gmd-11-4621-2018, 2018
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We present the VOLNA-OP2 tsunami simulation code, built on the OP2 library. It is unique among such solvers in its support for several high-performance computing platforms: CPUs, the Intel Xeon Phi, and GPUs. This is achieved in a way that the scientific code is kept separate from various parallel implementations, enabling easy maintainability. Scalability and efficiency are demonstrated on three supercomputers built with CPUs, Xeon Phi's, and GPUs.
Joakim Beck, Sören Wolfers, and Gerald P. Roberts
Geosci. Model Dev., 11, 4383–4397, https://doi.org/10.5194/gmd-11-4383-2018, https://doi.org/10.5194/gmd-11-4383-2018, 2018
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Seismic hazard assessment requires records of earthquake recurrence with many slip events. Current data from paleoseismology on individual faults are sparse and do not provide stable estimates of earthquake recurrence. We propose a statistical model-based method to study timings of earthquakes over the past few millennia. The results agree with historical earthquakes for faults in the Italian Apennines, and can aid future studies of fault interactions over multiple earthquake cycles.
Peter D. Dueben and Peter Bauer
Geosci. Model Dev., 11, 3999–4009, https://doi.org/10.5194/gmd-11-3999-2018, https://doi.org/10.5194/gmd-11-3999-2018, 2018
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We discuss the question of whether weather forecast models that are based on deep learning and trained on atmospheric data can compete with conventional weather and climate models that are based on physical principles and the basic equations of motion. We discuss the question in the context of global weather forecasts. A toy model for global weather predictions will be presented and used to identify challenges and fundamental design choices for a forecast system based on neural networks.
Anthony P. Walker, Ming Ye, Dan Lu, Martin G. De Kauwe, Lianhong Gu, Belinda E. Medlyn, Alistair Rogers, and Shawn P. Serbin
Geosci. Model Dev., 11, 3159–3185, https://doi.org/10.5194/gmd-11-3159-2018, https://doi.org/10.5194/gmd-11-3159-2018, 2018
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Large uncertainty is inherent in model predictions due to imperfect knowledge of how to describe the processes that a model is intended to represent. Yet methods to quantify and evaluate this model hypothesis uncertainty are limited. To address this, the multi-assumption architecture and testbed (MAAT) automates the generation of all possible models by combining multiple representations of multiple processes. MAAT provides a formal framework for quantification of model hypothesis uncertainty.
Matthias Rauter, Andreas Kofler, Andreas Huber, and Wolfgang Fellin
Geosci. Model Dev., 11, 2923–2939, https://doi.org/10.5194/gmd-11-2923-2018, https://doi.org/10.5194/gmd-11-2923-2018, 2018
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We present a physical model for the simulation of dense snow avalanches and other gravitational mass flows. The model is solved with OpenFOAM, a popular open-source toolkit for the numerical solution of partial differential equations. The solver has a modular design and is easy to extend. Therefore, it represents an ideal platform for implementing and testing new model approaches.
Zhixuan Cao, Abani Patra, Marcus Bursik, E. Bruce Pitman, and Matthew Jones
Geosci. Model Dev., 11, 2691–2715, https://doi.org/10.5194/gmd-11-2691-2018, https://doi.org/10.5194/gmd-11-2691-2018, 2018
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Plume-SPH provides the first particle-based simulation of volcanic plumes. Smooth particle hydrodynamics used here has several advantages over mesh-based methods for multiphase free boundary flows like volcanic plumes. This tool will provide more accurate eruption source terms to users of volcanic ash transport and dispersion models, greatly improving volcanic ash forecasts. The Plume-SPH code incorporates several newly developed techniques in SPH-needed multiphase compressible turbulent flow.
Sabine Hittmeir, Anne Philipp, and Petra Seibert
Geosci. Model Dev., 11, 2503–2523, https://doi.org/10.5194/gmd-11-2503-2018, https://doi.org/10.5194/gmd-11-2503-2018, 2018
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Model output of quantities such as precipitation usually represents integrals, for example sums over 3 h. It is not trivial to interpolate a time series of such integral values to instantaneous precipitation rates conserving the integral values. A piecewise linear reconstruction is presented which fulfils the conservation, is non-negative, and is continuous at interval boundaries. It will be used in the FLEXPART Lagrangian dispersion model but has many other possible applications.
Richard M. Gorman and Hilary J. Oliver
Geosci. Model Dev., 11, 2153–2173, https://doi.org/10.5194/gmd-11-2153-2018, https://doi.org/10.5194/gmd-11-2153-2018, 2018
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We describe an optimisation suite ("Cyclops") that can be used to apply a selection of nonlinear optimisation algorithms to "tune" the parameters of a geophysical model. Based on the Cylc workflow engine, Cyclops can be used to calibrate any modelling system that has itself been implemented as a (separate) Cylc model suite, provided it includes computation and output of the desired scalar cost function.
David J. Gardner, Jorge E. Guerra, François P. Hamon, Daniel R. Reynolds, Paul A. Ullrich, and Carol S. Woodward
Geosci. Model Dev., 11, 1497–1515, https://doi.org/10.5194/gmd-11-1497-2018, https://doi.org/10.5194/gmd-11-1497-2018, 2018
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As the computational power of supercomputing systems increases, and models for simulating the fluid flow of the Earth's atmosphere operate at higher resolutions, new approaches for advancing these models in time will be necessary. In order to produce the best possible result in the least amount of time, we evaluate a number of splittings, methods, and solvers on two test cases. Based on these results, we identify the most accurate and efficient approaches for consideration in production models.
Philippe Delandmeter, Jonathan Lambrechts, Vincent Legat, Valentin Vallaeys, Jaya Naithani, Wim Thiery, Jean-François Remacle, and Eric Deleersnijder
Geosci. Model Dev., 11, 1161–1179, https://doi.org/10.5194/gmd-11-1161-2018, https://doi.org/10.5194/gmd-11-1161-2018, 2018
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The discontinuous Galerkin (DG) finite element method is well suited for the modelling of three-dimensional flows exhibiting strong density gradients. Here, a vertical adaptive mesh method is developed for DG finite element methods and implemented into SLIM 3D. This technique increases drastically the accuracy of simulations including strong stratification, without affecting the simulation cost. SLIM 3D is then used to simulate the thermocline oscillations of Lake Tanganyika.
Thomas Rößler, Olaf Stein, Yi Heng, Paul Baumeister, and Lars Hoffmann
Geosci. Model Dev., 11, 575–592, https://doi.org/10.5194/gmd-11-575-2018, https://doi.org/10.5194/gmd-11-575-2018, 2018
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In this study, we performed an assessment of truncation errors and computational efficiency of trajectory calculations using six popular numerical integration schemes of the Runge–Kutta family. More than 5000 transport simulations for different seasons and regions of the free troposphere and stratosphere were conducted, driven by the latest version of ECMWF operational analyses and forecasts. The study provides guidelines to achieve the most accurate and efficient trajectory calculations.
Koen Hilgersom, Marcel Zijlema, and Nick van de Giesen
Geosci. Model Dev., 11, 521–540, https://doi.org/10.5194/gmd-11-521-2018, https://doi.org/10.5194/gmd-11-521-2018, 2018
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This study models the local inflow of groundwater at the bottom of a stream with large density gradients between the groundwater and surface water. Modelling salt and heat transport in a water body is very challenging, as it requires large computation times. Due to the circular local groundwater inflow and a negligible stream discharge, we assume axisymmetry around the inflow, which is easily implemented in an existing model, largely reduces the computation times, and still performs accurately.
Tarandeep S. Kalra, Alfredo Aretxabaleta, Pranay Seshadri, Neil K. Ganju, and Alexis Beudin
Geosci. Model Dev., 10, 4511–4523, https://doi.org/10.5194/gmd-10-4511-2017, https://doi.org/10.5194/gmd-10-4511-2017, 2017
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The paper details the sensitivity of vegetation properties that are input to a 3-D submerged aquatic vegetation model within a coupled hydrodynamics and wave model. It describes a novel strategy to perform sensitivity analysis efficiently by using a combination of the Effective Quadratures method and Sobol' indices. This method reduces the number of simulations to understand the sensitivity patterns and also quantifies the amount of sensitivity.
Yanan Fan, Roman Olson, and Jason P. Evans
Geosci. Model Dev., 10, 2321–2332, https://doi.org/10.5194/gmd-10-2321-2017, https://doi.org/10.5194/gmd-10-2321-2017, 2017
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We develop a novel and principled Bayesian statistical approach to computing model weights in climate change projection ensembles of regional climate models. The approach accounts for uncertainty in model bias, trend and internal variability. The weights are easily interpretable and the ensemble weighted models are shown to provide the correct coverage and improve upon existing methods in terms of providing narrower confidence intervals for climate change projections.
Darren Engwirda
Geosci. Model Dev., 10, 2117–2140, https://doi.org/10.5194/gmd-10-2117-2017, https://doi.org/10.5194/gmd-10-2117-2017, 2017
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A new algorithm for the generation of very high-quality staggered unstructured grids for multi-resolution ocean and atmospheric modelling is described. Through use of unstructured triangulation and grid-optimisation techniques, it is shown that meshes satisfying a number of important a priori grid-quality constraints can be constructed. This new algorithm is expected to be of interest to both developers and users of unstructured general circulation models.
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Short summary
With the availability of lake surface water temperature (LSWT) satellite data for 246 globally distributed large lakes, we tune a lake model, FLake, by varying 3 basic lake properties, shown to have the most influence over the modelled LSWTs. Tuning reduces the mean absolute difference (between model and satellite LSWTs) from an average of 3.38 ºC per day (untuned model) to 0.85 ºC per day (tuned model). The effect of several LSWT drivers, such as wind speed and lake depth are also demonstrated.
With the availability of lake surface water temperature (LSWT) satellite data for 246 globally...