Articles | Volume 9, issue 5
https://doi.org/10.5194/gmd-9-1977-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-9-1977-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper
| 
30 May 2016
Model description paper |
| 30 May 2016
LAKE 2.0: a model for temperature, methane, carbon dioxide and oxygen dynamics in lakes
Lomonosov Moscow State University, GSP-1, 119234, Leninskie Gory, 1, bld. 4, Moscow, Russia
Ivan Mammarella
Department of Physics, P.O. Box 48, 00014, University of Helsinki, Helsinki, Finland
Anne Ojala
Department of Environmental Sciences, Niemenkatu 73, 15140 Lahti, University of Helsinki, Helsinki, Finland
Department of Forest Sciences, P.O. Box 27, 00014, University of Helsinki, Helsinki, Finland
Heli Miettinen
Department of Environmental Sciences, P.O. Box 65, 00014, University of Helsinki, Helsinki, Finland
Vasily Lykosov
Institute of Numerical Mathematics, Russian Academy of Sciences, 119333, Gubkina, 8, Moscow, Russia
Lomonosov Moscow State University, GSP-1, 119234, Leninskie Gory, 1, bld. 4, Moscow, Russia
Timo Vesala
Department of Physics, P.O. Box 48, 00014, University of Helsinki, Helsinki, Finland
Department of Forest Sciences, P.O. Box 27, 00014, University of Helsinki, Helsinki, Finland
Related authors
Zoé Rehder, Thomas Kleinen, Lars Kutzbach, Victor Stepanenko, Moritz Langer, and Victor Brovkin
Biogeosciences, 20, 2837–2855, https://doi.org/10.5194/bg-20-2837-2023, https://doi.org/10.5194/bg-20-2837-2023, 2023
Short summary
Short summary
We use a new model to investigate how methane emissions from Arctic ponds change with warming. We find that emissions increase substantially. Under annual temperatures 5 °C above present temperatures, pond methane emissions are more than 3 times higher than now. Most of this increase is caused by an increase in plant productivity as plants provide the substrate microbes used to produce methane. We conclude that vegetation changes need to be included in predictions of pond methane emissions.
Mengxiao Wang, Lijuan Wen, Zhaoguo Li, Matti Leppäranta, Victor Stepanenko, Yixin Zhao, Ruijia Niu, Liuyiyi Yang, and Georgiy Kirillin
The Cryosphere, 16, 3635–3648, https://doi.org/10.5194/tc-16-3635-2022, https://doi.org/10.5194/tc-16-3635-2022, 2022
Short summary
Short summary
The under-ice water temperature of Ngoring Lake has been rising based on in situ observations. We obtained results showing that strong downward shortwave radiation is the main meteorological factor, and precipitation, wind speed, downward longwave radiation, air temperature, ice albedo, and ice extinction coefficient have an impact on the range and rate of lake temperature rise. Once the ice breaks, the lake body releases more energy than other lakes, whose water temperature remains horizontal.
Malgorzata Golub, Wim Thiery, Rafael Marcé, Don Pierson, Inne Vanderkelen, Daniel Mercado-Bettin, R. Iestyn Woolway, Luke Grant, Eleanor Jennings, Benjamin M. Kraemer, Jacob Schewe, Fang Zhao, Katja Frieler, Matthias Mengel, Vasiliy Y. Bogomolov, Damien Bouffard, Marianne Côté, Raoul-Marie Couture, Andrey V. Debolskiy, Bram Droppers, Gideon Gal, Mingyang Guo, Annette B. G. Janssen, Georgiy Kirillin, Robert Ladwig, Madeline Magee, Tadhg Moore, Marjorie Perroud, Sebastiano Piccolroaz, Love Raaman Vinnaa, Martin Schmid, Tom Shatwell, Victor M. Stepanenko, Zeli Tan, Bronwyn Woodward, Huaxia Yao, Rita Adrian, Mathew Allan, Orlane Anneville, Lauri Arvola, Karen Atkins, Leon Boegman, Cayelan Carey, Kyle Christianson, Elvira de Eyto, Curtis DeGasperi, Maria Grechushnikova, Josef Hejzlar, Klaus Joehnk, Ian D. Jones, Alo Laas, Eleanor B. Mackay, Ivan Mammarella, Hampus Markensten, Chris McBride, Deniz Özkundakci, Miguel Potes, Karsten Rinke, Dale Robertson, James A. Rusak, Rui Salgado, Leon van der Linden, Piet Verburg, Danielle Wain, Nicole K. Ward, Sabine Wollrab, and Galina Zdorovennova
Geosci. Model Dev., 15, 4597–4623, https://doi.org/10.5194/gmd-15-4597-2022, https://doi.org/10.5194/gmd-15-4597-2022, 2022
Short summary
Short summary
Lakes and reservoirs are warming across the globe. To better understand how lakes are changing and to project their future behavior amidst various sources of uncertainty, simulations with a range of lake models are required. This in turn requires international coordination across different lake modelling teams worldwide. Here we present a protocol for and results from coordinated simulations of climate change impacts on lakes worldwide.
Aleksandr F. Sabrekov, Benjamin R. K. Runkle, Mikhail V. Glagolev, Irina E. Terentieva, Victor M. Stepanenko, Oleg R. Kotsyurbenko, Shamil S. Maksyutov, and Oleg S. Pokrovsky
Biogeosciences, 14, 3715–3742, https://doi.org/10.5194/bg-14-3715-2017, https://doi.org/10.5194/bg-14-3715-2017, 2017
Short summary
Short summary
Boreal lakes and wetland ponds have pronounced impacts on the global methane cycle. During field campaigns to West Siberian lakes, strong variations in the methane flux on both local and regional scales were observed, with significant emissions from southern taiga lakes. A newly constructed process-based model helps reveal what controls this variability and on what spatial scales. Our results provide insights into the emissions and possible ways to significantly improve global carbon models.
Andrey Glazunov, Üllar Rannik, Victor Stepanenko, Vasily Lykosov, Mikko Auvinen, Timo Vesala, and Ivan Mammarella
Geosci. Model Dev., 9, 2925–2949, https://doi.org/10.5194/gmd-9-2925-2016, https://doi.org/10.5194/gmd-9-2925-2016, 2016
Short summary
Short summary
Large-eddy simulation (LES) and Lagrangian stochastic modeling of passive particle dispersion were applied to the scalar flux footprint determination in the stable atmospheric boundary layer. The footprint functions obtained in LES were compared with the functions calculated with the use of first-order single-particle Lagrangian stochastic models (LSMs) and zeroth-order Lagrangian stochastic models - the random displacement models (RDMs).
V. M. Stepanenko, A. Martynov, K. D. Jöhnk, Z. M. Subin, M. Perroud, X. Fang, F. Beyrich, D. Mironov, and S. Goyette
Geosci. Model Dev., 6, 1337–1352, https://doi.org/10.5194/gmd-6-1337-2013, https://doi.org/10.5194/gmd-6-1337-2013, 2013
Jacob A. Nelson, Sophia Walther, Fabian Gans, Basil Kraft, Ulrich Weber, Kimberly Novick, Nina Buchmann, Mirco Migliavacca, Georg Wohlfahrt, Ladislav Šigut, Andreas Ibrom, Dario Papale, Mathias Göckede, Gregory Duveiller, Alexander Knohl, Lukas Hörtnagl, Russell L. Scott, Weijie Zhang, Zayd Mahmoud Hamdi, Markus Reichstein, Sergio Aranda-Barranco, Jonas Ardö, Maarten Op de Beeck, Dave Billesbach, David Bowling, Rosvel Bracho, Christian Brümmer, Gustau Camps-Valls, Shiping Chen, Jamie Rose Cleverly, Ankur Desai, Gang Dong, Tarek S. El-Madany, Eugenie Susanne Euskirchen, Iris Feigenwinter, Marta Galvagno, Giacomo A. Gerosa, Bert Gielen, Ignacio Goded, Sarah Goslee, Christopher Michael Gough, Bernard Heinesch, Kazuhito Ichii, Marcin Antoni Jackowicz-Korczynski, Anne Klosterhalfen, Sara Knox, Hideki Kobayashi, Kukka-Maaria Kohonen, Mika Korkiakoski, Ivan Mammarella, Mana Gharun, Riccardo Marzuoli, Roser Matamala, Stefan Metzger, Leonardo Montagnani, Giacomo Nicolini, Thomas O'Halloran, Jean-Marc Ourcival, Matthias Peichl, Elise Pendall, Borja Ruiz Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, Marius Schmidt, Christopher R. Schwalm, Ankit Shekhar, Richard Silberstein, Maria Lucia Silveira, Donatella Spano, Torbern Tagesson, Gianluca Tramontana, Carlo Trotta, Fabio Turco, Timo Vesala, Caroline Vincke, Domenico Vitale, Enrique R. Vivoni, Yi Wang, William Woodgate, Enrico A. Yepez, Junhui Zhang, Donatella Zona, and Martin Jung
Biogeosciences, 21, 5079–5115, https://doi.org/10.5194/bg-21-5079-2024, https://doi.org/10.5194/bg-21-5079-2024, 2024
Short summary
Short summary
The movement of water, carbon, and energy from the Earth's surface to the atmosphere, or flux, is an important process to understand because it impacts our lives. Here, we outline a method called FLUXCOM-X to estimate global water and CO2 fluxes based on direct measurements from sites around the world. We go on to demonstrate how these new estimates of net CO2 uptake/loss, gross CO2 uptake, total water evaporation, and transpiration from plants compare to previous and independent estimates.
Anam M. Khan, Olivia E. Clifton, Jesse O. Bash, Sam Bland, Nathan Booth, Philip Cheung, Lisa Emberson, Johannes Flemming, Erick Fredj, Stefano Galmarini, Laurens Ganzeveld, Orestis Gazetas, Ignacio Goded, Christian Hogrefe, Christopher D. Holmes, Laszlo Horvath, Vincent Huijnen, Qian Li, Paul A. Makar, Ivan Mammarella, Giovanni Manca, J. William Munger, Juan L. Perez-Camanyo, Jonathan Pleim, Limei Ran, Roberto San Jose, Donna Schwede, Sam J. Silva, Ralf Staebler, Shihan Sun, Amos P. K. Tai, Eran Tas, Timo Vesala, Tamas Weidinger, Zhiyong Wu, Leiming Zhang, and Paul C. Stoy
EGUsphere, https://doi.org/10.5194/egusphere-2024-3038, https://doi.org/10.5194/egusphere-2024-3038, 2024
This preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).
Short summary
Short summary
Vegetation removes tropospheric ozone through stomatal uptake, and accurately modeling the stomatal uptake of ozone is important for modeling dry deposition and air quality. We evaluated the stomatal component of ozone dry deposition modeled by atmospheric chemistry models at six sites. We find that models and observation-based estimates agree at times during the growing season at all sites, but some models overestimated the stomatal component during the dry summers at a seasonally dry site.
Piaopiao Ke, Anna Lintunen, Pasi Kolari, Annalea Lohila, Santeri Tuovinen, Janne Lampilahti, Roseline Thakur, Maija Peltola, Otso Peräkylä, Tuomo Nieminen, Ekaterina Ezhova, Mari Pihlatie, Asta Laasonen, Markku Koskinen, Helena Rautakoski, Laura Heimsch, Tom Kokkonen, Aki Vähä, Ivan Mammarella, Steffen Noe, Jaana Bäck, Veli-Matti Kerminen, and Markku Kulmala
EGUsphere, https://doi.org/10.5194/egusphere-2024-1967, https://doi.org/10.5194/egusphere-2024-1967, 2024
Short summary
Short summary
Our research explores diverse ecosystems’ role in climate cooling via the concept of CarbonSink+ Potential. We measured CO2 uptake and loaal aerosol production in forests, farms, peatlands, urban gardens, and coastal areas across Finland and Estonia. The long-term data reveal that while forests are vital regarding CarbonSink+ Potential, farms and urban gardens also play significant roles. These insights can help optimize management policy of natural resource to mitigate global warming.
Kim A. P. Faassen, Jordi Vilà-Guerau de Arellano, Raquel González-Armas, Bert G. Heusinkveld, Ivan Mammarella, Wouter Peters, and Ingrid T. Luijkx
Biogeosciences, 21, 3015–3039, https://doi.org/10.5194/bg-21-3015-2024, https://doi.org/10.5194/bg-21-3015-2024, 2024
Short summary
Short summary
The ratio between atmospheric O2 and CO2 can be used to characterize the carbon balance at the surface. By combining a model and observations from the Hyytiälä forest (Finland), we show that using atmospheric O2 and CO2 measurements from a single height provides a weak constraint on the surface CO2 exchange because large-scale processes such as entrainment confound this signal. We therefore recommend always using multiple heights of O2 and CO2 measurements to study surface CO2 exchange.
Aki Vähä, Timo Vesala, Sofya Guseva, Anders Lindroth, Andreas Lorke, Sally MacIntyre, and Ivan Mammarella
EGUsphere, https://doi.org/10.5194/egusphere-2024-1644, https://doi.org/10.5194/egusphere-2024-1644, 2024
Short summary
Short summary
Boreal rivers are significant sources of carbon dioxide (CO2) and methane (CH4) to the atmosphere but the controls of these emissions are uncertain. We measured four months of CO2 and CH4 exchange between a regulated boreal river and the atmosphere with eddy covariance. We found statistical relationships between the gas exchange and several environmental variables, the most important of which were dissolved CO2 partial pressure in water, wind speed, and water temperature.
Ekaterina Ezhova, Topi Laanti, Anna Lintunen, Pasi Kolari, Tuomo Nieminen, Ivan Mammarella, Keijo Heljanko, and Markku Kulmala
EGUsphere, https://doi.org/10.5194/egusphere-2023-2559, https://doi.org/10.5194/egusphere-2023-2559, 2023
Short summary
Short summary
ML models are gaining popularity in biogeosciences. They are applied as gapfilling methods and used to upscale carbon fluxes to larger areas based on local measurements. In this study, we use Explainable ML methods to elucidate performance of machine learning models for carbon dioxide fluxes in boreal forest. We show that statistically equal models treat input variables differently. Explainable ML can help scientists to make informed solutions when applying ML models in their research.
Markku Kulmala, Anna Lintunen, Hanna Lappalainen, Annele Virtanen, Chao Yan, Ekaterina Ezhova, Tuomo Nieminen, Ilona Riipinen, Risto Makkonen, Johanna Tamminen, Anu-Maija Sundström, Antti Arola, Armin Hansel, Kari Lehtinen, Timo Vesala, Tuukka Petäjä, Jaana Bäck, Tom Kokkonen, and Veli-Matti Kerminen
Atmos. Chem. Phys., 23, 14949–14971, https://doi.org/10.5194/acp-23-14949-2023, https://doi.org/10.5194/acp-23-14949-2023, 2023
Short summary
Short summary
To be able to meet global grand challenges, we need comprehensive open data with proper metadata. In this opinion paper, we describe the SMEAR (Station for Measuring Earth surface – Atmosphere Relations) concept and include several examples (cases), such as new particle formation and growth, feedback loops and the effect of COVID-19, and what has been learned from these investigations. The future needs and the potential of comprehensive observations of the environment are summarized.
Matthew J. McGrath, Ana Maria Roxana Petrescu, Philippe Peylin, Robbie M. Andrew, Bradley Matthews, Frank Dentener, Juraj Balkovič, Vladislav Bastrikov, Meike Becker, Gregoire Broquet, Philippe Ciais, Audrey Fortems-Cheiney, Raphael Ganzenmüller, Giacomo Grassi, Ian Harris, Matthew Jones, Jürgen Knauer, Matthias Kuhnert, Guillaume Monteil, Saqr Munassar, Paul I. Palmer, Glen P. Peters, Chunjing Qiu, Mart-Jan Schelhaas, Oksana Tarasova, Matteo Vizzarri, Karina Winkler, Gianpaolo Balsamo, Antoine Berchet, Peter Briggs, Patrick Brockmann, Frédéric Chevallier, Giulia Conchedda, Monica Crippa, Stijn N. C. Dellaert, Hugo A. C. Denier van der Gon, Sara Filipek, Pierre Friedlingstein, Richard Fuchs, Michael Gauss, Christoph Gerbig, Diego Guizzardi, Dirk Günther, Richard A. Houghton, Greet Janssens-Maenhout, Ronny Lauerwald, Bas Lerink, Ingrid T. Luijkx, Géraud Moulas, Marilena Muntean, Gert-Jan Nabuurs, Aurélie Paquirissamy, Lucia Perugini, Wouter Peters, Roberto Pilli, Julia Pongratz, Pierre Regnier, Marko Scholze, Yusuf Serengil, Pete Smith, Efisio Solazzo, Rona L. Thompson, Francesco N. Tubiello, Timo Vesala, and Sophia Walther
Earth Syst. Sci. Data, 15, 4295–4370, https://doi.org/10.5194/essd-15-4295-2023, https://doi.org/10.5194/essd-15-4295-2023, 2023
Short summary
Short summary
Accurate estimation of fluxes of carbon dioxide from the land surface is essential for understanding future impacts of greenhouse gas emissions on the climate system. A wide variety of methods currently exist to estimate these sources and sinks. We are continuing work to develop annual comparisons of these diverse methods in order to clarify what they all actually calculate and to resolve apparent disagreement, in addition to highlighting opportunities for increased understanding.
Olivia E. Clifton, Donna Schwede, Christian Hogrefe, Jesse O. Bash, Sam Bland, Philip Cheung, Mhairi Coyle, Lisa Emberson, Johannes Flemming, Erick Fredj, Stefano Galmarini, Laurens Ganzeveld, Orestis Gazetas, Ignacio Goded, Christopher D. Holmes, László Horváth, Vincent Huijnen, Qian Li, Paul A. Makar, Ivan Mammarella, Giovanni Manca, J. William Munger, Juan L. Pérez-Camanyo, Jonathan Pleim, Limei Ran, Roberto San Jose, Sam J. Silva, Ralf Staebler, Shihan Sun, Amos P. K. Tai, Eran Tas, Timo Vesala, Tamás Weidinger, Zhiyong Wu, and Leiming Zhang
Atmos. Chem. Phys., 23, 9911–9961, https://doi.org/10.5194/acp-23-9911-2023, https://doi.org/10.5194/acp-23-9911-2023, 2023
Short summary
Short summary
A primary sink of air pollutants is dry deposition. Dry deposition estimates differ across the models used to simulate atmospheric chemistry. Here, we introduce an effort to examine dry deposition schemes from atmospheric chemistry models. We provide our approach’s rationale, document the schemes, and describe datasets used to drive and evaluate the schemes. We also launch the analysis of results by evaluating against observations and identifying the processes leading to model–model differences.
Alessandro Zanchetta, Linda M. J. Kooijmans, Steven van Heuven, Andrea Scifo, Hubertus A. Scheeren, Ivan Mammarella, Ute Karstens, Jin Ma, Maarten Krol, and Huilin Chen
Biogeosciences, 20, 3539–3553, https://doi.org/10.5194/bg-20-3539-2023, https://doi.org/10.5194/bg-20-3539-2023, 2023
Short summary
Short summary
Carbonyl sulfide (COS) has been suggested as a tool to estimate carbon dioxide (CO2) uptake by plants during photosynthesis. However, understanding its sources and sinks is critical to preventing biases in this estimate. Combining observations and models, this study proves that regional sources occasionally influence the measurements at the 60 m tall Lutjewad tower (1 m a.s.l.; 53°24′ N, 6°21′ E) in the Netherlands. Moreover, it estimates nighttime COS fluxes to be −3.0 ± 2.6 pmol m−2 s−1.
Zoé Rehder, Thomas Kleinen, Lars Kutzbach, Victor Stepanenko, Moritz Langer, and Victor Brovkin
Biogeosciences, 20, 2837–2855, https://doi.org/10.5194/bg-20-2837-2023, https://doi.org/10.5194/bg-20-2837-2023, 2023
Short summary
Short summary
We use a new model to investigate how methane emissions from Arctic ponds change with warming. We find that emissions increase substantially. Under annual temperatures 5 °C above present temperatures, pond methane emissions are more than 3 times higher than now. Most of this increase is caused by an increase in plant productivity as plants provide the substrate microbes used to produce methane. We conclude that vegetation changes need to be included in predictions of pond methane emissions.
Ana Maria Roxana Petrescu, Chunjing Qiu, Matthew J. McGrath, Philippe Peylin, Glen P. Peters, Philippe Ciais, Rona L. Thompson, Aki Tsuruta, Dominik Brunner, Matthias Kuhnert, Bradley Matthews, Paul I. Palmer, Oksana Tarasova, Pierre Regnier, Ronny Lauerwald, David Bastviken, Lena Höglund-Isaksson, Wilfried Winiwarter, Giuseppe Etiope, Tuula Aalto, Gianpaolo Balsamo, Vladislav Bastrikov, Antoine Berchet, Patrick Brockmann, Giancarlo Ciotoli, Giulia Conchedda, Monica Crippa, Frank Dentener, Christine D. Groot Zwaaftink, Diego Guizzardi, Dirk Günther, Jean-Matthieu Haussaire, Sander Houweling, Greet Janssens-Maenhout, Massaer Kouyate, Adrian Leip, Antti Leppänen, Emanuele Lugato, Manon Maisonnier, Alistair J. Manning, Tiina Markkanen, Joe McNorton, Marilena Muntean, Gabriel D. Oreggioni, Prabir K. Patra, Lucia Perugini, Isabelle Pison, Maarit T. Raivonen, Marielle Saunois, Arjo J. Segers, Pete Smith, Efisio Solazzo, Hanqin Tian, Francesco N. Tubiello, Timo Vesala, Guido R. van der Werf, Chris Wilson, and Sönke Zaehle
Earth Syst. Sci. Data, 15, 1197–1268, https://doi.org/10.5194/essd-15-1197-2023, https://doi.org/10.5194/essd-15-1197-2023, 2023
Short summary
Short summary
This study updates the state-of-the-art scientific overview of CH4 and N2O emissions in the EU27 and UK in Petrescu et al. (2021a). Yearly updates are needed to improve the different respective approaches and to inform on the development of formal verification systems. It integrates the most recent emission inventories, process-based model and regional/global inversions, comparing them with UNFCCC national GHG inventories, in support to policy to facilitate real-time verification procedures.
Matti Kämäräinen, Juha-Pekka Tuovinen, Markku Kulmala, Ivan Mammarella, Juha Aalto, Henriikka Vekuri, Annalea Lohila, and Anna Lintunen
Biogeosciences, 20, 897–909, https://doi.org/10.5194/bg-20-897-2023, https://doi.org/10.5194/bg-20-897-2023, 2023
Short summary
Short summary
In this study, we introduce a new method for modeling the exchange of carbon between the atmosphere and a study site located in a boreal forest in southern Finland. Our method yields more accurate results than previous approaches in this context. Accurately estimating carbon exchange is crucial for gaining a better understanding of the role of forests in regulating atmospheric carbon and addressing climate change.
Kim A. P. Faassen, Linh N. T. Nguyen, Eadin R. Broekema, Bert A. M. Kers, Ivan Mammarella, Timo Vesala, Penelope A. Pickers, Andrew C. Manning, Jordi Vilà-Guerau de Arellano, Harro A. J. Meijer, Wouter Peters, and Ingrid T. Luijkx
Atmos. Chem. Phys., 23, 851–876, https://doi.org/10.5194/acp-23-851-2023, https://doi.org/10.5194/acp-23-851-2023, 2023
Short summary
Short summary
The exchange ratio (ER) between atmospheric O2 and CO2 provides a useful tracer for separately estimating photosynthesis and respiration processes in the forest carbon balance. This is highly relevant to better understand the expected biosphere sink, which determines future atmospheric CO2 levels. We therefore measured O2, CO2, and their ER above a boreal forest in Finland and investigated their diurnal behaviour for a representative day, and we show the most suitable way to determine the ER.
Mengxiao Wang, Lijuan Wen, Zhaoguo Li, Matti Leppäranta, Victor Stepanenko, Yixin Zhao, Ruijia Niu, Liuyiyi Yang, and Georgiy Kirillin
The Cryosphere, 16, 3635–3648, https://doi.org/10.5194/tc-16-3635-2022, https://doi.org/10.5194/tc-16-3635-2022, 2022
Short summary
Short summary
The under-ice water temperature of Ngoring Lake has been rising based on in situ observations. We obtained results showing that strong downward shortwave radiation is the main meteorological factor, and precipitation, wind speed, downward longwave radiation, air temperature, ice albedo, and ice extinction coefficient have an impact on the range and rate of lake temperature rise. Once the ice breaks, the lake body releases more energy than other lakes, whose water temperature remains horizontal.
Kukka-Maaria Kohonen, Roderick Dewar, Gianluca Tramontana, Aleksanteri Mauranen, Pasi Kolari, Linda M. J. Kooijmans, Dario Papale, Timo Vesala, and Ivan Mammarella
Biogeosciences, 19, 4067–4088, https://doi.org/10.5194/bg-19-4067-2022, https://doi.org/10.5194/bg-19-4067-2022, 2022
Short summary
Short summary
Four different methods for quantifying photosynthesis (GPP) at ecosystem scale were tested, of which two are based on carbon dioxide (CO2) and two on carbonyl sulfide (COS) flux measurements. CO2-based methods are traditional partitioning, and a new method uses machine learning. We introduce a novel method for calculating GPP from COS fluxes, with potentially better applicability than the former methods. Both COS-based methods gave on average higher GPP estimates than the CO2-based estimates.
Joonatan Ala-Könni, Kukka-Maaria Kohonen, Matti Leppäranta, and Ivan Mammarella
Geosci. Model Dev., 15, 4739–4755, https://doi.org/10.5194/gmd-15-4739-2022, https://doi.org/10.5194/gmd-15-4739-2022, 2022
Short summary
Short summary
Properties of seasonally ice-covered lakes are not currently sufficiently included in global climate models. To fill this gap, this study evaluates three models that could be used to quantify the amount of heat that moves from and into the lake by the air above it and through evaporation of the ice cover. The results show that the complex nature of the surrounding environment as well as difficulties in accurately measuring the surface temperature of ice introduce errors to these models.
Malgorzata Golub, Wim Thiery, Rafael Marcé, Don Pierson, Inne Vanderkelen, Daniel Mercado-Bettin, R. Iestyn Woolway, Luke Grant, Eleanor Jennings, Benjamin M. Kraemer, Jacob Schewe, Fang Zhao, Katja Frieler, Matthias Mengel, Vasiliy Y. Bogomolov, Damien Bouffard, Marianne Côté, Raoul-Marie Couture, Andrey V. Debolskiy, Bram Droppers, Gideon Gal, Mingyang Guo, Annette B. G. Janssen, Georgiy Kirillin, Robert Ladwig, Madeline Magee, Tadhg Moore, Marjorie Perroud, Sebastiano Piccolroaz, Love Raaman Vinnaa, Martin Schmid, Tom Shatwell, Victor M. Stepanenko, Zeli Tan, Bronwyn Woodward, Huaxia Yao, Rita Adrian, Mathew Allan, Orlane Anneville, Lauri Arvola, Karen Atkins, Leon Boegman, Cayelan Carey, Kyle Christianson, Elvira de Eyto, Curtis DeGasperi, Maria Grechushnikova, Josef Hejzlar, Klaus Joehnk, Ian D. Jones, Alo Laas, Eleanor B. Mackay, Ivan Mammarella, Hampus Markensten, Chris McBride, Deniz Özkundakci, Miguel Potes, Karsten Rinke, Dale Robertson, James A. Rusak, Rui Salgado, Leon van der Linden, Piet Verburg, Danielle Wain, Nicole K. Ward, Sabine Wollrab, and Galina Zdorovennova
Geosci. Model Dev., 15, 4597–4623, https://doi.org/10.5194/gmd-15-4597-2022, https://doi.org/10.5194/gmd-15-4597-2022, 2022
Short summary
Short summary
Lakes and reservoirs are warming across the globe. To better understand how lakes are changing and to project their future behavior amidst various sources of uncertainty, simulations with a range of lake models are required. This in turn requires international coordination across different lake modelling teams worldwide. Here we present a protocol for and results from coordinated simulations of climate change impacts on lakes worldwide.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
Short summary
Short summary
The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
Short summary
Short summary
Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Hanna K. Lappalainen, Tuukka Petäjä, Timo Vihma, Jouni Räisänen, Alexander Baklanov, Sergey Chalov, Igor Esau, Ekaterina Ezhova, Matti Leppäranta, Dmitry Pozdnyakov, Jukka Pumpanen, Meinrat O. Andreae, Mikhail Arshinov, Eija Asmi, Jianhui Bai, Igor Bashmachnikov, Boris Belan, Federico Bianchi, Boris Biskaborn, Michael Boy, Jaana Bäck, Bin Cheng, Natalia Chubarova, Jonathan Duplissy, Egor Dyukarev, Konstantinos Eleftheriadis, Martin Forsius, Martin Heimann, Sirkku Juhola, Vladimir Konovalov, Igor Konovalov, Pavel Konstantinov, Kajar Köster, Elena Lapshina, Anna Lintunen, Alexander Mahura, Risto Makkonen, Svetlana Malkhazova, Ivan Mammarella, Stefano Mammola, Stephany Buenrostro Mazon, Outi Meinander, Eugene Mikhailov, Victoria Miles, Stanislav Myslenkov, Dmitry Orlov, Jean-Daniel Paris, Roberta Pirazzini, Olga Popovicheva, Jouni Pulliainen, Kimmo Rautiainen, Torsten Sachs, Vladimir Shevchenko, Andrey Skorokhod, Andreas Stohl, Elli Suhonen, Erik S. Thomson, Marina Tsidilina, Veli-Pekka Tynkkynen, Petteri Uotila, Aki Virkkula, Nadezhda Voropay, Tobias Wolf, Sayaka Yasunaka, Jiahua Zhang, Yubao Qiu, Aijun Ding, Huadong Guo, Valery Bondur, Nikolay Kasimov, Sergej Zilitinkevich, Veli-Matti Kerminen, and Markku Kulmala
Atmos. Chem. Phys., 22, 4413–4469, https://doi.org/10.5194/acp-22-4413-2022, https://doi.org/10.5194/acp-22-4413-2022, 2022
Short summary
Short summary
We summarize results during the last 5 years in the northern Eurasian region, especially from Russia, and introduce recent observations of the air quality in the urban environments in China. Although the scientific knowledge in these regions has increased, there are still gaps in our understanding of large-scale climate–Earth surface interactions and feedbacks. This arises from limitations in research infrastructures and integrative data analyses, hindering a comprehensive system analysis.
Timo Vesala, Kukka-Maaria Kohonen, Linda M. J. Kooijmans, Arnaud P. Praplan, Lenka Foltýnová, Pasi Kolari, Markku Kulmala, Jaana Bäck, David Nelson, Dan Yakir, Mark Zahniser, and Ivan Mammarella
Atmos. Chem. Phys., 22, 2569–2584, https://doi.org/10.5194/acp-22-2569-2022, https://doi.org/10.5194/acp-22-2569-2022, 2022
Short summary
Short summary
Carbonyl sulfide (COS) provides new insights into carbon cycle research. We present an easy-to-use flux parameterization and the longest existing time series of forest–atmosphere COS exchange measurements, which allow us to study both seasonal and interannual variability. We observed only uptake of COS by the forest on an annual basis, with 37 % variability between years. Upscaling the boreal COS uptake using a biosphere model indicates a significant missing COS sink at high latitudes.
Anna-Maria Virkkala, Susan M. Natali, Brendan M. Rogers, Jennifer D. Watts, Kathleen Savage, Sara June Connon, Marguerite Mauritz, Edward A. G. Schuur, Darcy Peter, Christina Minions, Julia Nojeim, Roisin Commane, Craig A. Emmerton, Mathias Goeckede, Manuel Helbig, David Holl, Hiroki Iwata, Hideki Kobayashi, Pasi Kolari, Efrén López-Blanco, Maija E. Marushchak, Mikhail Mastepanov, Lutz Merbold, Frans-Jan W. Parmentier, Matthias Peichl, Torsten Sachs, Oliver Sonnentag, Masahito Ueyama, Carolina Voigt, Mika Aurela, Julia Boike, Gerardo Celis, Namyi Chae, Torben R. Christensen, M. Syndonia Bret-Harte, Sigrid Dengel, Han Dolman, Colin W. Edgar, Bo Elberling, Eugenie Euskirchen, Achim Grelle, Juha Hatakka, Elyn Humphreys, Järvi Järveoja, Ayumi Kotani, Lars Kutzbach, Tuomas Laurila, Annalea Lohila, Ivan Mammarella, Yojiro Matsuura, Gesa Meyer, Mats B. Nilsson, Steven F. Oberbauer, Sang-Jong Park, Roman Petrov, Anatoly S. Prokushkin, Christopher Schulze, Vincent L. St. Louis, Eeva-Stiina Tuittila, Juha-Pekka Tuovinen, William Quinton, Andrej Varlagin, Donatella Zona, and Viacheslav I. Zyryanov
Earth Syst. Sci. Data, 14, 179–208, https://doi.org/10.5194/essd-14-179-2022, https://doi.org/10.5194/essd-14-179-2022, 2022
Short summary
Short summary
The effects of climate warming on carbon cycling across the Arctic–boreal zone (ABZ) remain poorly understood due to the relatively limited distribution of ABZ flux sites. Fortunately, this flux network is constantly increasing, but new measurements are published in various platforms, making it challenging to understand the ABZ carbon cycle as a whole. Here, we compiled a new database of Arctic–boreal CO2 fluxes to help facilitate large-scale assessments of the ABZ carbon cycle.
Linda M. J. Kooijmans, Ara Cho, Jin Ma, Aleya Kaushik, Katherine D. Haynes, Ian Baker, Ingrid T. Luijkx, Mathijs Groenink, Wouter Peters, John B. Miller, Joseph A. Berry, Jerome Ogée, Laura K. Meredith, Wu Sun, Kukka-Maaria Kohonen, Timo Vesala, Ivan Mammarella, Huilin Chen, Felix M. Spielmann, Georg Wohlfahrt, Max Berkelhammer, Mary E. Whelan, Kadmiel Maseyk, Ulli Seibt, Roisin Commane, Richard Wehr, and Maarten Krol
Biogeosciences, 18, 6547–6565, https://doi.org/10.5194/bg-18-6547-2021, https://doi.org/10.5194/bg-18-6547-2021, 2021
Short summary
Short summary
The gas carbonyl sulfide (COS) can be used to estimate photosynthesis. To adopt this approach on regional and global scales, we need biosphere models that can simulate COS exchange. So far, such models have not been evaluated against observations. We evaluate the COS biosphere exchange of the SiB4 model against COS flux observations. We find that the model is capable of simulating key processes in COS biosphere exchange. Still, we give recommendations for further improvement of the model.
Auke J. Visser, Laurens N. Ganzeveld, Ignacio Goded, Maarten C. Krol, Ivan Mammarella, Giovanni Manca, and K. Folkert Boersma
Atmos. Chem. Phys., 21, 18393–18411, https://doi.org/10.5194/acp-21-18393-2021, https://doi.org/10.5194/acp-21-18393-2021, 2021
Short summary
Short summary
Dry deposition is an important sink for tropospheric ozone that affects ecosystem carbon uptake, but process understanding remains incomplete. We apply a common deposition representation in atmospheric chemistry models and a multi-layer canopy model to multi-year ozone deposition observations. The multi-layer canopy model performs better on diurnal timescales compared to the common approach, leading to a substantially improved simulation of ozone deposition and vegetation ozone impact metrics.
Alex Resovsky, Michel Ramonet, Leonard Rivier, Jerome Tarniewicz, Philippe Ciais, Martin Steinbacher, Ivan Mammarella, Meelis Mölder, Michal Heliasz, Dagmar Kubistin, Matthias Lindauer, Jennifer Müller-Williams, Sebastien Conil, and Richard Engelen
Atmos. Meas. Tech., 14, 6119–6135, https://doi.org/10.5194/amt-14-6119-2021, https://doi.org/10.5194/amt-14-6119-2021, 2021
Short summary
Short summary
We present a technical description of a statistical methodology for extracting synoptic- and seasonal-length anomalies from greenhouse gas time series. The definition of what represents an anomalous signal is somewhat subjective, which we touch on throughout the paper. We show, however, that the method performs reasonably well in extracting portions of time series influenced by significant North Atlantic Oscillation weather episodes and continent-wide terrestrial biospheric aberrations.
Nahid Atashi, Dariush Rahimi, Victoria A. Sinclair, Martha A. Zaidan, Anton Rusanen, Henri Vuollekoski, Markku Kulmala, Timo Vesala, and Tareq Hussein
Hydrol. Earth Syst. Sci., 25, 4719–4740, https://doi.org/10.5194/hess-25-4719-2021, https://doi.org/10.5194/hess-25-4719-2021, 2021
Short summary
Short summary
Dew formation potential during a long-term period (1979–2018) was assessed in Iran to identify dew formation zones and to investigate the impacts of long-term variation in meteorological parameters on dew formation. Six dew formation zones were identified based on cluster analysis of the time series of the simulated dew yield. The distribution of dew formation zones in Iran was closely aligned with topography and sources of moisture. The dew formation trend was significantly negative.
Pavel Alekseychik, Aino Korrensalo, Ivan Mammarella, Samuli Launiainen, Eeva-Stiina Tuittila, Ilkka Korpela, and Timo Vesala
Biogeosciences, 18, 4681–4704, https://doi.org/10.5194/bg-18-4681-2021, https://doi.org/10.5194/bg-18-4681-2021, 2021
Short summary
Short summary
Bogs of northern Eurasia represent a major type of peatland ecosystem and contain vast amounts of carbon, but carbon balance monitoring studies on bogs are scarce. The current project explores 6 years of carbon balance data obtained using the state-of-the-art eddy-covariance technique at a Finnish bog Siikaneva. The results reveal relatively low interannual variability indicative of ecosystem resilience to both cool and hot summers and provide new insights into the seasonal course of C fluxes.
Kyle B. Delwiche, Sara Helen Knox, Avni Malhotra, Etienne Fluet-Chouinard, Gavin McNicol, Sarah Feron, Zutao Ouyang, Dario Papale, Carlo Trotta, Eleonora Canfora, You-Wei Cheah, Danielle Christianson, Ma. Carmelita R. Alberto, Pavel Alekseychik, Mika Aurela, Dennis Baldocchi, Sheel Bansal, David P. Billesbach, Gil Bohrer, Rosvel Bracho, Nina Buchmann, David I. Campbell, Gerardo Celis, Jiquan Chen, Weinan Chen, Housen Chu, Higo J. Dalmagro, Sigrid Dengel, Ankur R. Desai, Matteo Detto, Han Dolman, Elke Eichelmann, Eugenie Euskirchen, Daniela Famulari, Kathrin Fuchs, Mathias Goeckede, Sébastien Gogo, Mangaliso J. Gondwe, Jordan P. Goodrich, Pia Gottschalk, Scott L. Graham, Martin Heimann, Manuel Helbig, Carole Helfter, Kyle S. Hemes, Takashi Hirano, David Hollinger, Lukas Hörtnagl, Hiroki Iwata, Adrien Jacotot, Gerald Jurasinski, Minseok Kang, Kuno Kasak, John King, Janina Klatt, Franziska Koebsch, Ken W. Krauss, Derrick Y. F. Lai, Annalea Lohila, Ivan Mammarella, Luca Belelli Marchesini, Giovanni Manca, Jaclyn Hatala Matthes, Trofim Maximov, Lutz Merbold, Bhaskar Mitra, Timothy H. Morin, Eiko Nemitz, Mats B. Nilsson, Shuli Niu, Walter C. Oechel, Patricia Y. Oikawa, Keisuke Ono, Matthias Peichl, Olli Peltola, Michele L. Reba, Andrew D. Richardson, William Riley, Benjamin R. K. Runkle, Youngryel Ryu, Torsten Sachs, Ayaka Sakabe, Camilo Rey Sanchez, Edward A. Schuur, Karina V. R. Schäfer, Oliver Sonnentag, Jed P. Sparks, Ellen Stuart-Haëntjens, Cove Sturtevant, Ryan C. Sullivan, Daphne J. Szutu, Jonathan E. Thom, Margaret S. Torn, Eeva-Stiina Tuittila, Jessica Turner, Masahito Ueyama, Alex C. Valach, Rodrigo Vargas, Andrej Varlagin, Alma Vazquez-Lule, Joseph G. Verfaillie, Timo Vesala, George L. Vourlitis, Eric J. Ward, Christian Wille, Georg Wohlfahrt, Guan Xhuan Wong, Zhen Zhang, Donatella Zona, Lisamarie Windham-Myers, Benjamin Poulter, and Robert B. Jackson
Earth Syst. Sci. Data, 13, 3607–3689, https://doi.org/10.5194/essd-13-3607-2021, https://doi.org/10.5194/essd-13-3607-2021, 2021
Short summary
Short summary
Methane is an important greenhouse gas, yet we lack knowledge about its global emissions and drivers. We present FLUXNET-CH4, a new global collection of methane measurements and a critical resource for the research community. We use FLUXNET-CH4 data to quantify the seasonality of methane emissions from freshwater wetlands, finding that methane seasonality varies strongly with latitude. Our new database and analysis will improve wetland model accuracy and inform greenhouse gas budgets.
Toprak Aslan, Olli Peltola, Andreas Ibrom, Eiko Nemitz, Üllar Rannik, and Ivan Mammarella
Atmos. Meas. Tech., 14, 5089–5106, https://doi.org/10.5194/amt-14-5089-2021, https://doi.org/10.5194/amt-14-5089-2021, 2021
Short summary
Short summary
Vertical turbulent fluxes of gases measured by the eddy covariance (EC) technique are subject to high-frequency losses. There are different methods used to describe this low-pass filtering effect and to correct the measured fluxes. In this study, we analysed the systematic uncertainty related to this correction for various attenuation and signal-to-noise ratios. A new and robust transfer function method is finally proposed.
Olli Peltola, Toprak Aslan, Andreas Ibrom, Eiko Nemitz, Üllar Rannik, and Ivan Mammarella
Atmos. Meas. Tech., 14, 5071–5088, https://doi.org/10.5194/amt-14-5071-2021, https://doi.org/10.5194/amt-14-5071-2021, 2021
Short summary
Short summary
Gas fluxes measured by the eddy covariance (EC) technique are subject to filtering due to non-ideal instrumentation. For linear first-order systems this filtering causes also a time lag between vertical wind speed and gas signal which is additional to the gas travel time in the sampling line. The effect of this additional time lag on EC fluxes is ignored in current EC data processing routines. Here we show that this oversight biases EC fluxes and hence propose an approach to rectify this bias.
Anna B. Harper, Karina E. Williams, Patrick C. McGuire, Maria Carolina Duran Rojas, Debbie Hemming, Anne Verhoef, Chris Huntingford, Lucy Rowland, Toby Marthews, Cleiton Breder Eller, Camilla Mathison, Rodolfo L. B. Nobrega, Nicola Gedney, Pier Luigi Vidale, Fred Otu-Larbi, Divya Pandey, Sebastien Garrigues, Azin Wright, Darren Slevin, Martin G. De Kauwe, Eleanor Blyth, Jonas Ardö, Andrew Black, Damien Bonal, Nina Buchmann, Benoit Burban, Kathrin Fuchs, Agnès de Grandcourt, Ivan Mammarella, Lutz Merbold, Leonardo Montagnani, Yann Nouvellon, Natalia Restrepo-Coupe, and Georg Wohlfahrt
Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, https://doi.org/10.5194/gmd-14-3269-2021, 2021
Short summary
Short summary
We evaluated 10 representations of soil moisture stress in the JULES land surface model against site observations of GPP and latent heat flux. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES. In addition, using soil matric potential presents the opportunity to include parameters specific to plant functional type to further improve modeled fluxes.
Olli Peltola, Karl Lapo, Ilkka Martinkauppi, Ewan O'Connor, Christoph K. Thomas, and Timo Vesala
Atmos. Meas. Tech., 14, 2409–2427, https://doi.org/10.5194/amt-14-2409-2021, https://doi.org/10.5194/amt-14-2409-2021, 2021
Short summary
Short summary
We evaluated the suitability of fiber-optic distributed temperature sensing (DTS) for observing spatial (>25 cm) and temporal (>1 s) details of airflow within and above forests. The DTS measurements could discern up to third-order moments of the flow and observe spatial details of coherent flow motions. Similar measurements are not possible with more conventional measurement techniques. Hence, the DTS measurements will provide key insights into flows close to roughness elements, e.g. trees.
Tamara Emmerichs, Astrid Kerkweg, Huug Ouwersloot, Silvano Fares, Ivan Mammarella, and Domenico Taraborrelli
Geosci. Model Dev., 14, 495–519, https://doi.org/10.5194/gmd-14-495-2021, https://doi.org/10.5194/gmd-14-495-2021, 2021
Short summary
Short summary
Dry deposition to vegetation is a major sink of ground-level ozone. Its parameterization in atmospheric chemistry models represents a significant source of uncertainty for global tropospheric ozone. We extended the current model parameterization with a relevant pathway and important meteorological adjustment factors. The comparison with measurements shows that this enables a more realistic model representation of ozone dry deposition velocity. Globally, annual dry deposition loss increases.
Camille Yver-Kwok, Carole Philippon, Peter Bergamaschi, Tobias Biermann, Francescopiero Calzolari, Huilin Chen, Sebastien Conil, Paolo Cristofanelli, Marc Delmotte, Juha Hatakka, Michal Heliasz, Ove Hermansen, Kateřina Komínková, Dagmar Kubistin, Nicolas Kumps, Olivier Laurent, Tuomas Laurila, Irene Lehner, Janne Levula, Matthias Lindauer, Morgan Lopez, Ivan Mammarella, Giovanni Manca, Per Marklund, Jean-Marc Metzger, Meelis Mölder, Stephen M. Platt, Michel Ramonet, Leonard Rivier, Bert Scheeren, Mahesh Kumar Sha, Paul Smith, Martin Steinbacher, Gabriela Vítková, and Simon Wyss
Atmos. Meas. Tech., 14, 89–116, https://doi.org/10.5194/amt-14-89-2021, https://doi.org/10.5194/amt-14-89-2021, 2021
Short summary
Short summary
The Integrated Carbon Observation System (ICOS) is a pan-European research infrastructure which provides harmonized and high-precision scientific data on the carbon cycle and the greenhouse gas (GHG) budget. All stations have to undergo a rigorous assessment before being labeled, i.e., receiving approval to join the network. In this paper, we present the labeling process for the ICOS atmospheric network through the 23 stations that were labeled between November 2017 and November 2019.
Yuan Zhang, Ana Bastos, Fabienne Maignan, Daniel Goll, Olivier Boucher, Laurent Li, Alessandro Cescatti, Nicolas Vuichard, Xiuzhi Chen, Christof Ammann, M. Altaf Arain, T. Andrew Black, Bogdan Chojnicki, Tomomichi Kato, Ivan Mammarella, Leonardo Montagnani, Olivier Roupsard, Maria J. Sanz, Lukas Siebicke, Marek Urbaniak, Francesco Primo Vaccari, Georg Wohlfahrt, Will Woodgate, and Philippe Ciais
Geosci. Model Dev., 13, 5401–5423, https://doi.org/10.5194/gmd-13-5401-2020, https://doi.org/10.5194/gmd-13-5401-2020, 2020
Short summary
Short summary
We improved the ORCHIDEE LSM by distinguishing diffuse and direct light in canopy and evaluated the new model with observations from 159 sites. Compared with the old model, the new model has better sunny GPP and reproduced the diffuse light fertilization effect observed at flux sites. Our simulations also indicate different mechanisms causing the observed GPP enhancement under cloudy conditions at different times. The new model has the potential to study large-scale impacts of aerosol changes.
Kukka-Maaria Kohonen, Pasi Kolari, Linda M. J. Kooijmans, Huilin Chen, Ulli Seibt, Wu Sun, and Ivan Mammarella
Atmos. Meas. Tech., 13, 3957–3975, https://doi.org/10.5194/amt-13-3957-2020, https://doi.org/10.5194/amt-13-3957-2020, 2020
Short summary
Short summary
Biosphere–atmosphere gas exchange (flux) measurements of carbonyl sulfide (COS) are becoming popular for estimating biospheric photosynthesis. To compare COS flux measurements across different measurement sites, we need standardized protocols for data processing. We analyze how various data processing steps affect the calculated COS flux and how they differ from carbon dioxide (CO2) flux processing steps, and we aim to settle on a set of recommended protocols for COS flux calculation.
Xuefei Li, Outi Wahlroos, Sami Haapanala, Jukka Pumpanen, Harri Vasander, Anne Ojala, Timo Vesala, and Ivan Mammarella
Biogeosciences, 17, 3409–3425, https://doi.org/10.5194/bg-17-3409-2020, https://doi.org/10.5194/bg-17-3409-2020, 2020
Short summary
Short summary
We measured CO2 and CH4 fluxes and quantified the global warming potential of different surface areas in a recently created urban wetland in Southern Finland. The ecosystem has a small net climate warming effect which was mainly contributed by the open-water areas. Our results suggest that limiting open-water areas and setting a design preference for areas of emergent vegetation in the establishment of urban wetlands can be a beneficial practice when considering solely the climate impact.
Christopher P. O. Reyer, Ramiro Silveyra Gonzalez, Klara Dolos, Florian Hartig, Ylva Hauf, Matthias Noack, Petra Lasch-Born, Thomas Rötzer, Hans Pretzsch, Henning Meesenburg, Stefan Fleck, Markus Wagner, Andreas Bolte, Tanja G. M. Sanders, Pasi Kolari, Annikki Mäkelä, Timo Vesala, Ivan Mammarella, Jukka Pumpanen, Alessio Collalti, Carlo Trotta, Giorgio Matteucci, Ettore D'Andrea, Lenka Foltýnová, Jan Krejza, Andreas Ibrom, Kim Pilegaard, Denis Loustau, Jean-Marc Bonnefond, Paul Berbigier, Delphine Picart, Sébastien Lafont, Michael Dietze, David Cameron, Massimo Vieno, Hanqin Tian, Alicia Palacios-Orueta, Victor Cicuendez, Laura Recuero, Klaus Wiese, Matthias Büchner, Stefan Lange, Jan Volkholz, Hyungjun Kim, Joanna A. Horemans, Friedrich Bohn, Jörg Steinkamp, Alexander Chikalanov, Graham P. Weedon, Justin Sheffield, Flurin Babst, Iliusi Vega del Valle, Felicitas Suckow, Simon Martel, Mats Mahnken, Martin Gutsch, and Katja Frieler
Earth Syst. Sci. Data, 12, 1295–1320, https://doi.org/10.5194/essd-12-1295-2020, https://doi.org/10.5194/essd-12-1295-2020, 2020
Short summary
Short summary
Process-based vegetation models are widely used to predict local and global ecosystem dynamics and climate change impacts. Due to their complexity, they require careful parameterization and evaluation to ensure that projections are accurate and reliable. The PROFOUND Database provides a wide range of empirical data to calibrate and evaluate vegetation models that simulate climate impacts at the forest stand scale to support systematic model intercomparisons and model development in Europe.
Sheila Wachiye, Lutz Merbold, Timo Vesala, Janne Rinne, Matti Räsänen, Sonja Leitner, and Petri Pellikka
Biogeosciences, 17, 2149–2167, https://doi.org/10.5194/bg-17-2149-2020, https://doi.org/10.5194/bg-17-2149-2020, 2020
Short summary
Short summary
Limited data on emissions in Africa translate into uncertainty during GHG budgeting. We studied annual CO2, N2O, and CH4 emissions in four land-use types in Kenyan savanna using static chambers and gas chromatography. CO2 emissions varied between seasons and land-use types. Soil moisture and vegetation explained the seasonal variation, while soil temperature was insignificant. N2O and CH4 emissions did not vary at all sites. Our results are useful in climate change mitigation interventions.
Chris R. Flechard, Andreas Ibrom, Ute M. Skiba, Wim de Vries, Marcel van Oijen, David R. Cameron, Nancy B. Dise, Janne F. J. Korhonen, Nina Buchmann, Arnaud Legout, David Simpson, Maria J. Sanz, Marc Aubinet, Denis Loustau, Leonardo Montagnani, Johan Neirynck, Ivan A. Janssens, Mari Pihlatie, Ralf Kiese, Jan Siemens, André-Jean Francez, Jürgen Augustin, Andrej Varlagin, Janusz Olejnik, Radosław Juszczak, Mika Aurela, Daniel Berveiller, Bogdan H. Chojnicki, Ulrich Dämmgen, Nicolas Delpierre, Vesna Djuricic, Julia Drewer, Eric Dufrêne, Werner Eugster, Yannick Fauvel, David Fowler, Arnoud Frumau, André Granier, Patrick Gross, Yannick Hamon, Carole Helfter, Arjan Hensen, László Horváth, Barbara Kitzler, Bart Kruijt, Werner L. Kutsch, Raquel Lobo-do-Vale, Annalea Lohila, Bernard Longdoz, Michal V. Marek, Giorgio Matteucci, Marta Mitosinkova, Virginie Moreaux, Albrecht Neftel, Jean-Marc Ourcival, Kim Pilegaard, Gabriel Pita, Francisco Sanz, Jan K. Schjoerring, Maria-Teresa Sebastià, Y. Sim Tang, Hilde Uggerud, Marek Urbaniak, Netty van Dijk, Timo Vesala, Sonja Vidic, Caroline Vincke, Tamás Weidinger, Sophie Zechmeister-Boltenstern, Klaus Butterbach-Bahl, Eiko Nemitz, and Mark A. Sutton
Biogeosciences, 17, 1583–1620, https://doi.org/10.5194/bg-17-1583-2020, https://doi.org/10.5194/bg-17-1583-2020, 2020
Short summary
Short summary
Experimental evidence from a network of 40 monitoring sites in Europe suggests that atmospheric nitrogen deposition to forests and other semi-natural vegetation impacts the carbon sequestration rates in ecosystems, as well as the net greenhouse gas balance including other greenhouse gases such as nitrous oxide and methane. Excess nitrogen deposition in polluted areas also leads to other environmental impacts such as nitrogen leaching to groundwater and other pollutant gaseous emissions.
Chris R. Flechard, Marcel van Oijen, David R. Cameron, Wim de Vries, Andreas Ibrom, Nina Buchmann, Nancy B. Dise, Ivan A. Janssens, Johan Neirynck, Leonardo Montagnani, Andrej Varlagin, Denis Loustau, Arnaud Legout, Klaudia Ziemblińska, Marc Aubinet, Mika Aurela, Bogdan H. Chojnicki, Julia Drewer, Werner Eugster, André-Jean Francez, Radosław Juszczak, Barbara Kitzler, Werner L. Kutsch, Annalea Lohila, Bernard Longdoz, Giorgio Matteucci, Virginie Moreaux, Albrecht Neftel, Janusz Olejnik, Maria J. Sanz, Jan Siemens, Timo Vesala, Caroline Vincke, Eiko Nemitz, Sophie Zechmeister-Boltenstern, Klaus Butterbach-Bahl, Ute M. Skiba, and Mark A. Sutton
Biogeosciences, 17, 1621–1654, https://doi.org/10.5194/bg-17-1621-2020, https://doi.org/10.5194/bg-17-1621-2020, 2020
Short summary
Short summary
Nitrogen deposition from the atmosphere to unfertilized terrestrial vegetation such as forests can increase carbon dioxide uptake and favour carbon sequestration by ecosystems. However the data from observational networks are difficult to interpret in terms of a carbon-to-nitrogen response, because there are a number of other confounding factors, such as climate, soil physical properties and fertility, and forest age. We propose a model-based method to untangle the different influences.
Paul C. Stoy, Tarek S. El-Madany, Joshua B. Fisher, Pierre Gentine, Tobias Gerken, Stephen P. Good, Anne Klosterhalfen, Shuguang Liu, Diego G. Miralles, Oscar Perez-Priego, Angela J. Rigden, Todd H. Skaggs, Georg Wohlfahrt, Ray G. Anderson, A. Miriam J. Coenders-Gerrits, Martin Jung, Wouter H. Maes, Ivan Mammarella, Matthias Mauder, Mirco Migliavacca, Jacob A. Nelson, Rafael Poyatos, Markus Reichstein, Russell L. Scott, and Sebastian Wolf
Biogeosciences, 16, 3747–3775, https://doi.org/10.5194/bg-16-3747-2019, https://doi.org/10.5194/bg-16-3747-2019, 2019
Short summary
Short summary
Key findings are the nearly optimal response of T to atmospheric water vapor pressure deficits across methods and scales. Additionally, the notion that T / ET intermittently approaches 1, which is a basis for many partitioning methods, does not hold for certain methods and ecosystems. To better constrain estimates of E and T from combined ET measurements, we propose a combination of independent measurement techniques to better constrain E and T at the ecosystem scale.
Jarmo Mäkelä, Jürgen Knauer, Mika Aurela, Andrew Black, Martin Heimann, Hideki Kobayashi, Annalea Lohila, Ivan Mammarella, Hank Margolis, Tiina Markkanen, Jouni Susiluoto, Tea Thum, Toni Viskari, Sönke Zaehle, and Tuula Aalto
Geosci. Model Dev., 12, 4075–4098, https://doi.org/10.5194/gmd-12-4075-2019, https://doi.org/10.5194/gmd-12-4075-2019, 2019
Short summary
Short summary
We assess the differences of six stomatal conductance formulations, embedded into a land–vegetation model JSBACH, on 10 boreal coniferous evergreen forest sites. We calibrate the model parameters using all six functions in a multi-year experiment, as well as for a separate drought event at one of the sites, using the adaptive population importance sampler. The analysis reveals weaknesses in the stomatal conductance formulation-dependent model behaviour that we are able to partially amend.
Petri Kiuru, Anne Ojala, Ivan Mammarella, Jouni Heiskanen, Kukka-Maaria Erkkilä, Heli Miettinen, Timo Vesala, and Timo Huttula
Biogeosciences, 16, 3297–3317, https://doi.org/10.5194/bg-16-3297-2019, https://doi.org/10.5194/bg-16-3297-2019, 2019
Short summary
Short summary
Many boreal lakes emit the greenhouse gas carbon dioxide (CO2) to the atmosphere. We incorporated four different gas exchange models into a physico-biochemical lake model and studied their ability to simulate lake air–water CO2 fluxes. The inclusion of refined gas exchange models in lake models that simulate carbon cycling is important to assess lake carbon budgets. However, higher estimates for inorganic carbon sources in boreal lakes are needed to balance the CO2 losses to the atmosphere.
Olli Peltola, Timo Vesala, Yao Gao, Olle Räty, Pavel Alekseychik, Mika Aurela, Bogdan Chojnicki, Ankur R. Desai, Albertus J. Dolman, Eugenie S. Euskirchen, Thomas Friborg, Mathias Göckede, Manuel Helbig, Elyn Humphreys, Robert B. Jackson, Georg Jocher, Fortunat Joos, Janina Klatt, Sara H. Knox, Natalia Kowalska, Lars Kutzbach, Sebastian Lienert, Annalea Lohila, Ivan Mammarella, Daniel F. Nadeau, Mats B. Nilsson, Walter C. Oechel, Matthias Peichl, Thomas Pypker, William Quinton, Janne Rinne, Torsten Sachs, Mateusz Samson, Hans Peter Schmid, Oliver Sonnentag, Christian Wille, Donatella Zona, and Tuula Aalto
Earth Syst. Sci. Data, 11, 1263–1289, https://doi.org/10.5194/essd-11-1263-2019, https://doi.org/10.5194/essd-11-1263-2019, 2019
Short summary
Short summary
Here we develop a monthly gridded dataset of northern (> 45 N) wetland methane (CH4) emissions. The data product is derived using a random forest machine-learning technique and eddy covariance CH4 fluxes from 25 wetland sites. Annual CH4 emissions from these wetlands calculated from the derived data product are comparable to prior studies focusing on these areas. This product is an independent estimate of northern wetland CH4 emissions and hence could be used, e.g. for process model evaluation.
Elisa Männistö, Aino Korrensalo, Pavel Alekseychik, Ivan Mammarella, Olli Peltola, Timo Vesala, and Eeva-Stiina Tuittila
Biogeosciences, 16, 2409–2421, https://doi.org/10.5194/bg-16-2409-2019, https://doi.org/10.5194/bg-16-2409-2019, 2019
Short summary
Short summary
We studied methane emitted as episodic bubble release (ebullition) from water and bare peat surfaces of a boreal bog over three years. There was more ebullition from water than from bare peat surfaces, and it was controlled by peat temperature, water level, atmospheric pressure and the weekly temperature sum. However, the contribution of methane bubbles to the total ecosystem methane emission was small. This new information can be used to improve process models of peatland methane dynamics.
Ekaterina Ezhova, Ilona Ylivinkka, Joel Kuusk, Kaupo Komsaare, Marko Vana, Alisa Krasnova, Steffen Noe, Mikhail Arshinov, Boris Belan, Sung-Bin Park, Jošt Valentin Lavrič, Martin Heimann, Tuukka Petäjä, Timo Vesala, Ivan Mammarella, Pasi Kolari, Jaana Bäck, Üllar Rannik, Veli-Matti Kerminen, and Markku Kulmala
Atmos. Chem. Phys., 18, 17863–17881, https://doi.org/10.5194/acp-18-17863-2018, https://doi.org/10.5194/acp-18-17863-2018, 2018
Short summary
Short summary
Understanding the connections between aerosols, solar radiation and photosynthesis in terrestrial ecosystems is important for estimates of the CO2 balance in the atmosphere. Atmospheric aerosols and clouds influence solar radiation. In this study, we quantify the aerosol effect on solar radiation in boreal forests and study forest ecosystems response to this change in the radiation conditions. The analysis is based on atmospheric observations from several remote stations in Eurasian forests.
Qiaozhi Zha, Chao Yan, Heikki Junninen, Matthieu Riva, Nina Sarnela, Juho Aalto, Lauriane Quéléver, Simon Schallhart, Lubna Dada, Liine Heikkinen, Otso Peräkylä, Jun Zou, Clémence Rose, Yonghong Wang, Ivan Mammarella, Gabriel Katul, Timo Vesala, Douglas R. Worsnop, Markku Kulmala, Tuukka Petäjä, Federico Bianchi, and Mikael Ehn
Atmos. Chem. Phys., 18, 17437–17450, https://doi.org/10.5194/acp-18-17437-2018, https://doi.org/10.5194/acp-18-17437-2018, 2018
Short summary
Short summary
Vertical measurements of highly oxygenated molecules (HOMs) below and above the forest canopy were performed for the first time in a boreal forest during September 2016. Our results highlight that near-ground HOM measurements may only be representative of a small fraction of the entire nocturnal boundary layer, which may sequentially influence the growth of newly formed particles and SOA formation close to ground surface, where the majority of measurements are conducted.
Leena Järvi, Üllar Rannik, Tom V. Kokkonen, Mona Kurppa, Ari Karppinen, Rostislav D. Kouznetsov, Pekka Rantala, Timo Vesala, and Curtis R. Wood
Atmos. Meas. Tech., 11, 5421–5438, https://doi.org/10.5194/amt-11-5421-2018, https://doi.org/10.5194/amt-11-5421-2018, 2018
Short summary
Short summary
Identical EC systems on two sides of a building in central Helsinki were used to assess the uncertainty of the vertical fluxes on the single measurement point from July 2013 to September 2015. Sampling at only one point yielded up to 12% underestimation in the cumulative carbon fluxes; for sensible and latent heat the respective values were up to 5 and 8%. The commonly used statistics, kurtosis and skewness, are not necessarily suitable for filtering out data in a densely built urban area.
Pertti Hari, Steffen Noe, Sigrid Dengel, Jan Elbers, Bert Gielen, Veli-Matti Kerminen, Bart Kruijt, Liisa Kulmala, Anders Lindroth, Ivan Mammarella, Tuukka Petäjä, Guy Schurgers, Anni Vanhatalo, Markku Kulmala, and Jaana Bäck
Atmos. Chem. Phys., 18, 13321–13328, https://doi.org/10.5194/acp-18-13321-2018, https://doi.org/10.5194/acp-18-13321-2018, 2018
Short summary
Short summary
The development of eddy-covariance measurements of ecosystem CO2 fluxes began a new era in the field studies of photosynthesis. The interpretation of the very variable CO2 fluxes in evergreen forests has been problematic especially in seasonal transition times. We apply two theoretical needle-level equations and show they can predict photosynthetic CO2 flux between the atmosphere and Scots pine forests. This has strong implications for the interpretation of the global change and boreal forests.
Jason A. Ducker, Christopher D. Holmes, Trevor F. Keenan, Silvano Fares, Allen H. Goldstein, Ivan Mammarella, J. William Munger, and Jordan Schnell
Biogeosciences, 15, 5395–5413, https://doi.org/10.5194/bg-15-5395-2018, https://doi.org/10.5194/bg-15-5395-2018, 2018
Short summary
Short summary
We have developed an accurate method (SynFlux) to estimate ozone deposition and stomatal uptake across 103 flux tower sites (43 US, 60 Europe), where ozone concentrations and fluxes have not been measured. In all, the SynFlux public dataset provides monthly values of ozone dry deposition for 926 site years across a wide array of ecosystems. The SynFlux dataset will promote further applications to ecosystem, air quality, or climate modeling across the geoscience community.
Mary E. Whelan, Sinikka T. Lennartz, Teresa E. Gimeno, Richard Wehr, Georg Wohlfahrt, Yuting Wang, Linda M. J. Kooijmans, Timothy W. Hilton, Sauveur Belviso, Philippe Peylin, Róisín Commane, Wu Sun, Huilin Chen, Le Kuai, Ivan Mammarella, Kadmiel Maseyk, Max Berkelhammer, King-Fai Li, Dan Yakir, Andrew Zumkehr, Yoko Katayama, Jérôme Ogée, Felix M. Spielmann, Florian Kitz, Bharat Rastogi, Jürgen Kesselmeier, Julia Marshall, Kukka-Maaria Erkkilä, Lisa Wingate, Laura K. Meredith, Wei He, Rüdiger Bunk, Thomas Launois, Timo Vesala, Johan A. Schmidt, Cédric G. Fichot, Ulli Seibt, Scott Saleska, Eric S. Saltzman, Stephen A. Montzka, Joseph A. Berry, and J. Elliott Campbell
Biogeosciences, 15, 3625–3657, https://doi.org/10.5194/bg-15-3625-2018, https://doi.org/10.5194/bg-15-3625-2018, 2018
Short summary
Short summary
Measurements of the trace gas carbonyl sulfide (OCS) are helpful in quantifying photosynthesis at previously unknowable temporal and spatial scales. While CO2 is both consumed and produced within ecosystems, OCS is mostly produced in the oceans or from specific industries, and destroyed in plant leaves in proportion to CO2. This review summarizes the advancements we have made in the understanding of OCS exchange and applications to vital ecosystem water and carbon cycle questions.
Maria Provenzale, Anne Ojala, Jouni Heiskanen, Kukka-Maaria Erkkilä, Ivan Mammarella, Pertti Hari, and Timo Vesala
Biogeosciences, 15, 2021–2032, https://doi.org/10.5194/bg-15-2021-2018, https://doi.org/10.5194/bg-15-2021-2018, 2018
Short summary
Short summary
We extensively tested and refined a direct, high-frequency free-water CO2 measurement method to study the lake net ecosystem productivity. The method was first proposed in 2008, but neglected ever since.
With high-frequency direct methods, we can calculate the lake productivity more precisely, and parameterise its dependency on environmental variables. This helps us expand our knowledge on the carbon cycle in the water, and leads to a better integration of water bodies in carbon budgets.
Jouni Susiluoto, Maarit Raivonen, Leif Backman, Marko Laine, Jarmo Makela, Olli Peltola, Timo Vesala, and Tuula Aalto
Geosci. Model Dev., 11, 1199–1228, https://doi.org/10.5194/gmd-11-1199-2018, https://doi.org/10.5194/gmd-11-1199-2018, 2018
Short summary
Short summary
Methane is an important greenhouse gas and methane emissions from wetlands contribute to the warming of the climate. Wetland methane emissions are also challenging to estimate. We analyze the performance of a new wetland emission computer model utilizing mathematical methods and using data from a wetland in southern Finland. The analysis helps to explain how wetlands produce methane and how emission modeling can be improved and uncertainties in the emission estimates reduced in future studies.
Aino Korrensalo, Elisa Männistö, Pavel Alekseychik, Ivan Mammarella, Janne Rinne, Timo Vesala, and Eeva-Stiina Tuittila
Biogeosciences, 15, 1749–1761, https://doi.org/10.5194/bg-15-1749-2018, https://doi.org/10.5194/bg-15-1749-2018, 2018
Short summary
Short summary
We measured methane fluxes of a boreal bog from six different plant community types in 2012–2014. We found only little variation in methane fluxes among plant community types. Peat temperature as well as both leaf area of plant species with air channels and of all vegetation are important factors controlling the fluxes. We also detected negative net fluxes indicating methane consumption each year. Our results can be used to improve the models of peatland methane dynamics under climate change.
Olli Peltola, Maarit Raivonen, Xuefei Li, and Timo Vesala
Biogeosciences, 15, 937–951, https://doi.org/10.5194/bg-15-937-2018, https://doi.org/10.5194/bg-15-937-2018, 2018
Short summary
Short summary
Emission via bubbling, i.e. ebullition, is one of the main CH4 emission pathways from wetlands to the atmosphere, yet it is still coarsely represented in wetland CH4 models. In this study three ebullition modelling approaches are evaluated. Modeled annual CH4 emissions were similar, whereas temporal variability in CH4 emissions varied an order of magnitude between the approaches. Hence realistic description of ebullition is needed when models are compared to and calibrated against measurements.
Chunjing Qiu, Dan Zhu, Philippe Ciais, Bertrand Guenet, Gerhard Krinner, Shushi Peng, Mika Aurela, Christian Bernhofer, Christian Brümmer, Syndonia Bret-Harte, Housen Chu, Jiquan Chen, Ankur R. Desai, Jiří Dušek, Eugénie S. Euskirchen, Krzysztof Fortuniak, Lawrence B. Flanagan, Thomas Friborg, Mateusz Grygoruk, Sébastien Gogo, Thomas Grünwald, Birger U. Hansen, David Holl, Elyn Humphreys, Miriam Hurkuck, Gerard Kiely, Janina Klatt, Lars Kutzbach, Chloé Largeron, Fatima Laggoun-Défarge, Magnus Lund, Peter M. Lafleur, Xuefei Li, Ivan Mammarella, Lutz Merbold, Mats B. Nilsson, Janusz Olejnik, Mikaell Ottosson-Löfvenius, Walter Oechel, Frans-Jan W. Parmentier, Matthias Peichl, Norbert Pirk, Olli Peltola, Włodzimierz Pawlak, Daniel Rasse, Janne Rinne, Gaius Shaver, Hans Peter Schmid, Matteo Sottocornola, Rainer Steinbrecher, Torsten Sachs, Marek Urbaniak, Donatella Zona, and Klaudia Ziemblinska
Geosci. Model Dev., 11, 497–519, https://doi.org/10.5194/gmd-11-497-2018, https://doi.org/10.5194/gmd-11-497-2018, 2018
Short summary
Short summary
Northern peatlands store large amount of soil carbon and are vulnerable to climate change. We implemented peatland hydrological and carbon accumulation processes into the ORCHIDEE land surface model. The model was evaluated against EC measurements from 30 northern peatland sites. The model generally well reproduced the spatial gradient and temporal variations in GPP and NEE at these sites. Water table depth was not well predicted but had only small influence on simulated NEE.
Wu Sun, Linda M. J. Kooijmans, Kadmiel Maseyk, Huilin Chen, Ivan Mammarella, Timo Vesala, Janne Levula, Helmi Keskinen, and Ulli Seibt
Atmos. Chem. Phys., 18, 1363–1378, https://doi.org/10.5194/acp-18-1363-2018, https://doi.org/10.5194/acp-18-1363-2018, 2018
Short summary
Short summary
Most soils consume carbonyl sulfide (COS) and CO due to microbial uptake, but whether boreal forest soils act like this is uncertain. We measured growing season soil COS and CO fluxes in a Finnish pine forest. The soil behaved as a consistent and relatively invariant sink of COS and CO. Uptake rates of COS and CO decrease with soil moisture due to diffusion limitation and increase with respiration because of microbial control. Using COS to infer photosynthesis is not affected by soil COS flux.
Simon Schallhart, Pekka Rantala, Maija K. Kajos, Juho Aalto, Ivan Mammarella, Taina M. Ruuskanen, and Markku Kulmala
Atmos. Chem. Phys., 18, 815–832, https://doi.org/10.5194/acp-18-815-2018, https://doi.org/10.5194/acp-18-815-2018, 2018
Short summary
Short summary
Emissions of volatile organic compounds (VOCs) have impact to air quality, human health and climate. We investigated the development of VOC exchange in a boreal forest between April and June 2013. VOC exchange and diversity increased towards summer, but over 75 % of the biogenic net exchange was driven by methanol, monoterpenes and acetone only. The boreal forest emitted less than 0.2 % carbon in form of VOCs in relation to the carbon uptake.
Kukka-Maaria Erkkilä, Anne Ojala, David Bastviken, Tobias Biermann, Jouni J. Heiskanen, Anders Lindroth, Olli Peltola, Miitta Rantakari, Timo Vesala, and Ivan Mammarella
Biogeosciences, 15, 429–445, https://doi.org/10.5194/bg-15-429-2018, https://doi.org/10.5194/bg-15-429-2018, 2018
Short summary
Short summary
Global estimates of freshwater greenhouse gas emissions are usually based on simple gas transfer models that underestimate the emissions. Thus, comparison of different gas transfer models is required for evaluating the uncertainties. This study compares three commonly used methods for estimating greenhouse gas emissions over lakes. We conclude that simple gas transfer models underestimate the emissions and more recent models should be used for global freshwater greenhouse gas emission estimates.
Maarit Raivonen, Sampo Smolander, Leif Backman, Jouni Susiluoto, Tuula Aalto, Tiina Markkanen, Jarmo Mäkelä, Janne Rinne, Olli Peltola, Mika Aurela, Annalea Lohila, Marin Tomasic, Xuefei Li, Tuula Larmola, Sari Juutinen, Eeva-Stiina Tuittila, Martin Heimann, Sanna Sevanto, Thomas Kleinen, Victor Brovkin, and Timo Vesala
Geosci. Model Dev., 10, 4665–4691, https://doi.org/10.5194/gmd-10-4665-2017, https://doi.org/10.5194/gmd-10-4665-2017, 2017
Short summary
Short summary
Wetlands are one of the most significant natural sources of the strong greenhouse gas methane. We developed a model that can be used within a larger wetland carbon model to simulate the methane emissions. In this study, we present the model and results of its testing. We found that the model works well with different settings and that the results depend primarily on the rate of input anoxic soil respiration and also on factors that affect the simulated oxygen concentrations in the wetland soil.
Mikko Auvinen, Leena Järvi, Antti Hellsten, Üllar Rannik, and Timo Vesala
Geosci. Model Dev., 10, 4187–4205, https://doi.org/10.5194/gmd-10-4187-2017, https://doi.org/10.5194/gmd-10-4187-2017, 2017
Short summary
Short summary
Correct spatial interpretation of a micrometeorological measurement requires the determination of its effective source area, or footprint. In urban areas the use of analytical models becomes highly questionable. This work introduces a computational methodology that enables the generation of footprints for complex urban sites. The methodology is based on conducting high-resolution flow and particle analysis on a model that features a detailed topographic description of a real city environment.
Yao Gao, Tiina Markkanen, Mika Aurela, Ivan Mammarella, Tea Thum, Aki Tsuruta, Huiyi Yang, and Tuula Aalto
Biogeosciences, 14, 4409–4422, https://doi.org/10.5194/bg-14-4409-2017, https://doi.org/10.5194/bg-14-4409-2017, 2017
Short summary
Short summary
We investigated the response of water use efficiency (WUE) to summer drought in a boreal Scots pine forest (Pinus sylvestris) on the daily time scale mainly using EC flux data from the Hyytiälä (southern Finland) flux site. Simulation results from the JSBACH land surface model were also evaluated against the observed results. The performance of three WUE metrics at the ecosystem level (EWUE, IWUE, and uWUE) during the severe summer drought were studied and showed different results.
Linda M. J. Kooijmans, Kadmiel Maseyk, Ulli Seibt, Wu Sun, Timo Vesala, Ivan Mammarella, Pasi Kolari, Juho Aalto, Alessandro Franchin, Roberta Vecchi, Gianluigi Valli, and Huilin Chen
Atmos. Chem. Phys., 17, 11453–11465, https://doi.org/10.5194/acp-17-11453-2017, https://doi.org/10.5194/acp-17-11453-2017, 2017
Short summary
Short summary
Carbon cycle studies rely on the accuracy of models to estimate the amount of CO2 being taken up by vegetation. The gas carbonyl sulfide (COS) can serve as a tool to estimate the vegetative CO2 uptake by scaling the ecosystem uptake of COS to that of CO2. Here we investigate the nighttime fluxes of COS. The relationships found in this study will aid in implementing nighttime COS uptake in models, which is key to obtain accurate estimates of vegetative CO2 uptake with the use of COS.
Aleksandr F. Sabrekov, Benjamin R. K. Runkle, Mikhail V. Glagolev, Irina E. Terentieva, Victor M. Stepanenko, Oleg R. Kotsyurbenko, Shamil S. Maksyutov, and Oleg S. Pokrovsky
Biogeosciences, 14, 3715–3742, https://doi.org/10.5194/bg-14-3715-2017, https://doi.org/10.5194/bg-14-3715-2017, 2017
Short summary
Short summary
Boreal lakes and wetland ponds have pronounced impacts on the global methane cycle. During field campaigns to West Siberian lakes, strong variations in the methane flux on both local and regional scales were observed, with significant emissions from southern taiga lakes. A newly constructed process-based model helps reveal what controls this variability and on what spatial scales. Our results provide insights into the emissions and possible ways to significantly improve global carbon models.
Pavel Alekseychik, Ivan Mammarella, Dmitry Karpov, Sigrid Dengel, Irina Terentieva, Alexander Sabrekov, Mikhail Glagolev, and Elena Lapshina
Atmos. Chem. Phys., 17, 9333–9345, https://doi.org/10.5194/acp-17-9333-2017, https://doi.org/10.5194/acp-17-9333-2017, 2017
Short summary
Short summary
West Siberian peatlands occupy a large fraction of land area in the region, and yet little is known about their interaction with the atmosphere. We took the first measurements of CO2 and energy surface balances over a typical bog of West Siberian middle taiga, in the vicinity of the Mukhrino field station (Khanty–Mansiysk). The May–August study in a wet year (2015) revealed a relatively large photosynthetic sink of CO2 that was close to the high end of estimates at bog sites elsewhere.
Antti-Jussi Kieloaho, Mari Pihlatie, Samuli Launiainen, Markku Kulmala, Marja-Liisa Riekkola, Jevgeni Parshintsev, Ivan Mammarella, Timo Vesala, and Jussi Heinonsalo
Biogeosciences, 14, 1075–1091, https://doi.org/10.5194/bg-14-1075-2017, https://doi.org/10.5194/bg-14-1075-2017, 2017
Short summary
Short summary
The alkylamines are important precursors in secondary aerosol formation in boreal forests. We quantified alkylamine concentrations in fungal species present in boreal forests in order to estimate soil as a source of atmospheric alkylamines. Based on our knowledge we estimated possible soil–atmosphere exchange of these compounds. The results shows that the boreal forest soil could act as a source of alkylamines depending on environmental conditions and studied compound.
Putian Zhou, Laurens Ganzeveld, Üllar Rannik, Luxi Zhou, Rosa Gierens, Ditte Taipale, Ivan Mammarella, and Michael Boy
Atmos. Chem. Phys., 17, 1361–1379, https://doi.org/10.5194/acp-17-1361-2017, https://doi.org/10.5194/acp-17-1361-2017, 2017
Short summary
Short summary
We implemented a multi-layer O3 dry deposition model in a 1-D model SOSAA to simulate O3 flux and concentration within and above a boreal forest at SMEAR II in Hyytiälä, Finland, in August 2010. The results showed that when RH > 70 % the O3 uptake on leaf wet skin was ~ 51 % to the total deposition at night and ~ 19 % at daytime. The sub-canopy contribution below 4.2 m was ~ 38 % at daytime. The averaged daily chemical contribution to total O3 alteration inside the canopy was less than 10 %.
Aino Korrensalo, Pavel Alekseychik, Tomáš Hájek, Janne Rinne, Timo Vesala, Lauri Mehtätalo, Ivan Mammarella, and Eeva-Stiina Tuittila
Biogeosciences, 14, 257–269, https://doi.org/10.5194/bg-14-257-2017, https://doi.org/10.5194/bg-14-257-2017, 2017
Short summary
Short summary
Photosynthetic parameters of peatland plant species were measured over one growing season in an ombrotrophic bog. Based on these measurements, ecosystem-level photosynthesis was calculated for the whole growing season and compared with an estimate derived from micrometeorological measurements. These two estimates corresponded well. Species with low areal cover at the site but high photosynthetic efficiency appeared to be potentially important for the ecosystem-level carbon balance.
Jarmo Mäkelä, Jouni Susiluoto, Tiina Markkanen, Mika Aurela, Heikki Järvinen, Ivan Mammarella, Stefan Hagemann, and Tuula Aalto
Nonlin. Processes Geophys., 23, 447–465, https://doi.org/10.5194/npg-23-447-2016, https://doi.org/10.5194/npg-23-447-2016, 2016
Short summary
Short summary
The land-based hydrological cycle is one of the key processes controlling the growth and wilting of plants and the amount of carbon vegetation can assimilate. Recent studies have shown that many land surface models have biases in this area. We optimized parameters in one such model (JSBACH) and were able to enhance the model performance in many respects, but the response to drought remained unaffected. Further studies into this aspect should include alternative stomatal conductance formulations.
Hanna K. Lappalainen, Veli-Matti Kerminen, Tuukka Petäjä, Theo Kurten, Aleksander Baklanov, Anatoly Shvidenko, Jaana Bäck, Timo Vihma, Pavel Alekseychik, Meinrat O. Andreae, Stephen R. Arnold, Mikhail Arshinov, Eija Asmi, Boris Belan, Leonid Bobylev, Sergey Chalov, Yafang Cheng, Natalia Chubarova, Gerrit de Leeuw, Aijun Ding, Sergey Dobrolyubov, Sergei Dubtsov, Egor Dyukarev, Nikolai Elansky, Kostas Eleftheriadis, Igor Esau, Nikolay Filatov, Mikhail Flint, Congbin Fu, Olga Glezer, Aleksander Gliko, Martin Heimann, Albert A. M. Holtslag, Urmas Hõrrak, Juha Janhunen, Sirkku Juhola, Leena Järvi, Heikki Järvinen, Anna Kanukhina, Pavel Konstantinov, Vladimir Kotlyakov, Antti-Jussi Kieloaho, Alexander S. Komarov, Joni Kujansuu, Ilmo Kukkonen, Ella-Maria Duplissy, Ari Laaksonen, Tuomas Laurila, Heikki Lihavainen, Alexander Lisitzin, Alexsander Mahura, Alexander Makshtas, Evgeny Mareev, Stephany Mazon, Dmitry Matishov, Vladimir Melnikov, Eugene Mikhailov, Dmitri Moisseev, Robert Nigmatulin, Steffen M. Noe, Anne Ojala, Mari Pihlatie, Olga Popovicheva, Jukka Pumpanen, Tatjana Regerand, Irina Repina, Aleksei Shcherbinin, Vladimir Shevchenko, Mikko Sipilä, Andrey Skorokhod, Dominick V. Spracklen, Hang Su, Dmitry A. Subetto, Junying Sun, Arkady Y. Terzhevik, Yuri Timofeyev, Yuliya Troitskaya, Veli-Pekka Tynkkynen, Viacheslav I. Kharuk, Nina Zaytseva, Jiahua Zhang, Yrjö Viisanen, Timo Vesala, Pertti Hari, Hans Christen Hansson, Gennady G. Matvienko, Nikolai S. Kasimov, Huadong Guo, Valery Bondur, Sergej Zilitinkevich, and Markku Kulmala
Atmos. Chem. Phys., 16, 14421–14461, https://doi.org/10.5194/acp-16-14421-2016, https://doi.org/10.5194/acp-16-14421-2016, 2016
Short summary
Short summary
After kick off in 2012, the Pan-Eurasian Experiment (PEEX) program has expanded fast and today the multi-disciplinary research community covers ca. 80 institutes and a network of ca. 500 scientists from Europe, Russia, and China. Here we introduce scientific topics relevant in this context. This is one of the first multi-disciplinary overviews crossing scientific boundaries, from atmospheric sciences to socio-economics and social sciences.
Üllar Rannik, Olli Peltola, and Ivan Mammarella
Atmos. Meas. Tech., 9, 5163–5181, https://doi.org/10.5194/amt-9-5163-2016, https://doi.org/10.5194/amt-9-5163-2016, 2016
Short summary
Short summary
We review available methods for the random error estimation of turbulent fluxes that are widely used by the flux community. Flux errors are evaluated theoretically as well as via numerical calculations by using measured and simulated records. We recommend two flux random errors with clear physical meaning: the total error resulting from stochastic nature of turbulence, well approximated by the method of Finkelstein and Sims (2001), and the error of the flux due to the instrumental noise.
Ivan Mammarella, Olli Peltola, Annika Nordbo, Leena Järvi, and Üllar Rannik
Atmos. Meas. Tech., 9, 4915–4933, https://doi.org/10.5194/amt-9-4915-2016, https://doi.org/10.5194/amt-9-4915-2016, 2016
Short summary
Short summary
In this study we have performed an inter-comparison between EddyUH and EddyPro, two public and commonly used software packages for eddy covariance data processing and calculation. The aims are to estimate the flux uncertainty due to the use of different software packages, and to assess the most critical processing steps, determining the largest deviations in the calculated fluxes. We focus not only on water vapour and carbon dioxide fluxes, but also on the methane flux.
Mari Pihlatie, Üllar Rannik, Sami Haapanala, Olli Peltola, Narasinha Shurpali, Pertti J. Martikainen, Saara Lind, Niina Hyvönen, Perttu Virkajärvi, Mark Zahniser, and Ivan Mammarella
Biogeosciences, 13, 5471–5485, https://doi.org/10.5194/bg-13-5471-2016, https://doi.org/10.5194/bg-13-5471-2016, 2016
Short summary
Short summary
The sources and sinks of carbon monoxide (CO) in the biosphere are poorly understood. We report the first continuous data series of CO fluxes measured by eddy covariance method in an agricultural bioenergy crop. The CO fluxes were seasonally and diurnally variable demonstrating the parallel consumption and production processes. Radiation was the main driver of CO emissions, and the eddy covariance method was demonstrated as suitable for linking short-term flux dynamics to environmental drivers.
Yiying Chen, James Ryder, Vladislav Bastrikov, Matthew J. McGrath, Kim Naudts, Juliane Otto, Catherine Ottlé, Philippe Peylin, Jan Polcher, Aude Valade, Andrew Black, Jan A. Elbers, Eddy Moors, Thomas Foken, Eva van Gorsel, Vanessa Haverd, Bernard Heinesch, Frank Tiedemann, Alexander Knohl, Samuli Launiainen, Denis Loustau, Jérôme Ogée, Timo Vessala, and Sebastiaan Luyssaert
Geosci. Model Dev., 9, 2951–2972, https://doi.org/10.5194/gmd-9-2951-2016, https://doi.org/10.5194/gmd-9-2951-2016, 2016
Short summary
Short summary
In this study, we compiled a set of within-canopy and above-canopy measurements of energy and water fluxes, and used these data to parametrize and validate the new multi-layer energy budget scheme for a range of forest types. An adequate parametrization approach has been presented for the global-scale land surface model (ORCHIDEE-CAN). Furthermore, model performance of the new multi-layer parametrization was compared against the existing single-layer scheme.
Andrey Glazunov, Üllar Rannik, Victor Stepanenko, Vasily Lykosov, Mikko Auvinen, Timo Vesala, and Ivan Mammarella
Geosci. Model Dev., 9, 2925–2949, https://doi.org/10.5194/gmd-9-2925-2016, https://doi.org/10.5194/gmd-9-2925-2016, 2016
Short summary
Short summary
Large-eddy simulation (LES) and Lagrangian stochastic modeling of passive particle dispersion were applied to the scalar flux footprint determination in the stable atmospheric boundary layer. The footprint functions obtained in LES were compared with the functions calculated with the use of first-order single-particle Lagrangian stochastic models (LSMs) and zeroth-order Lagrangian stochastic models - the random displacement models (RDMs).
Üllar Rannik, Luxi Zhou, Putian Zhou, Rosa Gierens, Ivan Mammarella, Andrey Sogachev, and Michael Boy
Atmos. Chem. Phys., 16, 3145–3160, https://doi.org/10.5194/acp-16-3145-2016, https://doi.org/10.5194/acp-16-3145-2016, 2016
Short summary
Short summary
Atmospheric boundary layer (ABL) model coupled with detailed atmospheric chemistry and aerosol dynamical model was used to quantify the role of aerosol and ABL dynamics in the vertical transport of aerosols at a pine forest site in southern Finland. Simulations showed that under dynamical conditions the particle fluxes above canopy can significantly deviate from the dry deposition into the canopy. The deviation can be systematic for certain particle sizes over a period of several days.
Saara E. Lind, Narasinha J. Shurpali, Olli Peltola, Ivan Mammarella, Niina Hyvönen, Marja Maljanen, Mari Räty, Perttu Virkajärvi, and Pertti J. Martikainen
Biogeosciences, 13, 1255–1268, https://doi.org/10.5194/bg-13-1255-2016, https://doi.org/10.5194/bg-13-1255-2016, 2016
Short summary
Short summary
We showed that the reed canary grass (RCG) was environmentally friendly from the CO2 balance point of view when cultivated on this mineral soil. When compared to the earlier findings on the same crop on organic soil site, the capacity of the crop to withdraw atmospheric CO2 was even stronger on the present mineral soil site than that on the organic soil site. For full estimation of the climatic impacts of this bioenergy system, a life cycle assessment will be needed.
A. Collalti, S. Marconi, A. Ibrom, C. Trotta, A. Anav, E. D'Andrea, G. Matteucci, L. Montagnani, B. Gielen, I. Mammarella, T. Grünwald, A. Knohl, F. Berninger, Y. Zhao, R. Valentini, and M. Santini
Geosci. Model Dev., 9, 479–504, https://doi.org/10.5194/gmd-9-479-2016, https://doi.org/10.5194/gmd-9-479-2016, 2016
Short summary
Short summary
This study evaluates the performances of the new version (v.5.1) of 3D-CMCC Forest Ecosystem Model in simulating gross primary productivity (GPP), against eddy covariance GPP data for 10 FLUXNET forest sites across Europe. The model consistently reproduces both in timing and in magnitude daily and monthly GPP variability across all sites, with the exception of the two Mediterranean sites. Inclusion of forest structure within simulation ameliorate in some cases the model output.
P. Hari, T. Petäjä, J. Bäck, V.-M. Kerminen, H. K. Lappalainen, T. Vihma, T. Laurila, Y. Viisanen, T. Vesala, and M. Kulmala
Atmos. Chem. Phys., 16, 1017–1028, https://doi.org/10.5194/acp-16-1017-2016, https://doi.org/10.5194/acp-16-1017-2016, 2016
Short summary
Short summary
This manuscript introduces a conceptual design of a global, hierarchical observation network which provides tools and increased understanding to tackle the inter-connected environmental and societal challenges that we will face in the coming decades. Each ecosystem type on the globe has its own characteristic features that need to be taken into consideration. The hierarchical network is able to tackle problems related to large spatial scales, heterogeneity of ecosystems and their complexity.
Y. Gao, T. Markkanen, T. Thum, M. Aurela, A. Lohila, I. Mammarella, M. Kämäräinen, S. Hagemann, and T. Aalto
Hydrol. Earth Syst. Sci., 20, 175–191, https://doi.org/10.5194/hess-20-175-2016, https://doi.org/10.5194/hess-20-175-2016, 2016
T. Li, W. Zhang, Q. Zhang, Y. Lu, G. Wang, Z. Niu, M. Raivonen, and T. Vesala
Biogeosciences, 12, 6853–6868, https://doi.org/10.5194/bg-12-6853-2015, https://doi.org/10.5194/bg-12-6853-2015, 2015
Short summary
Short summary
Natural wetlands in China have experienced extensive conversion and climate warming, which makes the estimation of methane emission from wetlands highly uncertain. In this paper, we simulated an increase of 25.5% in national CH4 fluxes from 1950 to 2010, which was mainly induced by climate warming. Although climate warming has accelerated CH4 fluxes, the total amount of national CH4 emissions decreased by approximately 2.35 Tg (1.91－2.81 Tg), due to a large wetland loss of 17.0 million ha.
F. Minunno, M. Peltoniemi, S. Launiainen, M. Aurela, A. Lindroth, A. Lohila, I. Mammarella, K. Minkkinen, and A. Mäkelä
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmdd-8-5089-2015, https://doi.org/10.5194/gmdd-8-5089-2015, 2015
Revised manuscript not accepted
Ü. Rannik, S. Haapanala, N. J. Shurpali, I. Mammarella, S. Lind, N. Hyvönen, O. Peltola, M. Zahniser, P. J. Martikainen, and T. Vesala
Biogeosciences, 12, 415–432, https://doi.org/10.5194/bg-12-415-2015, https://doi.org/10.5194/bg-12-415-2015, 2015
B. Tupek, K. Minkkinen, J. Pumpanen, T. Vesala, and E. Nikinmaa
Biogeosciences, 12, 281–297, https://doi.org/10.5194/bg-12-281-2015, https://doi.org/10.5194/bg-12-281-2015, 2015
O. Peltola, A. Hensen, C. Helfter, L. Belelli Marchesini, F. C. Bosveld, W. C. M. van den Bulk, J. A. Elbers, S. Haapanala, J. Holst, T. Laurila, A. Lindroth, E. Nemitz, T. Röckmann, A. T. Vermeulen, and I. Mammarella
Biogeosciences, 11, 3163–3186, https://doi.org/10.5194/bg-11-3163-2014, https://doi.org/10.5194/bg-11-3163-2014, 2014
S. Dengel, D. Zona, T. Sachs, M. Aurela, M. Jammet, F. J. W. Parmentier, W. Oechel, and T. Vesala
Biogeosciences, 10, 8185–8200, https://doi.org/10.5194/bg-10-8185-2013, https://doi.org/10.5194/bg-10-8185-2013, 2013
K. Wang, C. Liu, X. Zheng, M. Pihlatie, B. Li, S. Haapanala, T. Vesala, H. Liu, Y. Wang, G. Liu, and F. Hu
Biogeosciences, 10, 6865–6877, https://doi.org/10.5194/bg-10-6865-2013, https://doi.org/10.5194/bg-10-6865-2013, 2013
V. M. Stepanenko, A. Martynov, K. D. Jöhnk, Z. M. Subin, M. Perroud, X. Fang, F. Beyrich, D. Mironov, and S. Goyette
Geosci. Model Dev., 6, 1337–1352, https://doi.org/10.5194/gmd-6-1337-2013, https://doi.org/10.5194/gmd-6-1337-2013, 2013
O. Peltola, I. Mammarella, S. Haapanala, G. Burba, and T. Vesala
Biogeosciences, 10, 3749–3765, https://doi.org/10.5194/bg-10-3749-2013, https://doi.org/10.5194/bg-10-3749-2013, 2013
J. F. J. Korhonen, M. Pihlatie, J. Pumpanen, H. Aaltonen, P. Hari, J. Levula, A.-J. Kieloaho, E. Nikinmaa, T. Vesala, and H. Ilvesniemi
Biogeosciences, 10, 1083–1095, https://doi.org/10.5194/bg-10-1083-2013, https://doi.org/10.5194/bg-10-1083-2013, 2013
G. Lasslop, M. Migliavacca, G. Bohrer, M. Reichstein, M. Bahn, A. Ibrom, C. Jacobs, P. Kolari, D. Papale, T. Vesala, G. Wohlfahrt, and A. Cescatti
Biogeosciences, 9, 5243–5259, https://doi.org/10.5194/bg-9-5243-2012, https://doi.org/10.5194/bg-9-5243-2012, 2012
Related subject area
Hydrology
Generalised drought index: a novel multi-scale daily approach for drought assessment
Development and performance of a high-resolution surface wave and storm surge forecast model: application to a large lake
Deep dive into hydrologic simulations at global scale: harnessing the power of deep learning and physics-informed differentiable models (δHBV-globe1.0-hydroDL)
PyEt v1.3.1: a Python package for the estimation of potential evapotranspiration
Prediction of hysteretic matric potential dynamics using artificial intelligence: application of autoencoder neural networks
Regionalization in global hydrological models and its impact on runoff simulations: a case study using WaterGAP3 (v 1.0.0)
STORM v.2: A simple, stochastic rainfall model for exploring the impacts of climate and climate change at and near the land surface in gauged watersheds
Fluvial flood inundation and socio-economic impact model based on open data
RoGeR v3.0.5 – a process-based hydrological toolbox model in Python
Coupling a large-scale glacier and hydrological model (OGGM v1.5.3 and CWatM V1.08) – towards an improved representation of mountain water resources in global assessments
An open-source refactoring of the Canadian Small Lakes Model for estimates of evaporation from medium-sized reservoirs
EvalHyd v0.1.2: a polyglot tool for the evaluation of deterministic and probabilistic streamflow predictions
Modelling water quantity and quality for integrated water cycle management with the Water Systems Integrated Modelling framework (WSIMOD) software
HGS-PDAF (version 1.0): a modular data assimilation framework for an integrated surface and subsurface hydrological model
Wflow_sbm v0.7.3, a spatially distributed hydrological model: from global data to local applications
Reservoir Assessment Tool version 3.0: a scalable and user-friendly software platform to mobilize the global water management community
HydroFATE (v1): a high-resolution contaminant fate model for the global river system
Validation of a new global irrigation scheme in the land surface model ORCHIDEE v2.2
GPEP v1.0: the Geospatial Probabilistic Estimation Package to support Earth science applications
GEMS v1.0: Generalizable Empirical Model of Snow Accumulation and Melt, based on daily snow mass changes in response to climate and topographic drivers
mesas.py v1.0: a flexible Python package for modeling solute transport and transit times using StorAge Selection functions
rSHUD v2.0: advancing the Simulator for Hydrologic Unstructured Domains and unstructured hydrological modeling in the R environment
GLOBGM v1.0: a parallel implementation of a 30 arcsec PCR-GLOBWB-MODFLOW global-scale groundwater model
Development of inter-grid-cell lateral unsaturated and saturated flow model in the E3SM Land Model (v2.0)
The global water resources and use model WaterGAP v2.2e: description and evaluation of modifications and new features
pyESDv1.0.1: an open-source Python framework for empirical-statistical downscaling of climate information
Representing the impact of Rhizophora mangroves on flow in a hydrodynamic model (COAWST_rh v1.0): the importance of three-dimensional root system structures
Dynamically weighted ensemble of geoscientific models via automated machine-learning-based classification
Enhancing the representation of water management in global hydrological models
NEOPRENE v1.0.1: a Python library for generating spatial rainfall based on the Neyman–Scott process
Uncertainty estimation for a new exponential-filter-based long-term root-zone soil moisture dataset from Copernicus Climate Change Service (C3S) surface observations
Validating the Nernst–Planck transport model under reaction-driven flow conditions using RetroPy v1.0
DynQual v1.0: a high-resolution global surface water quality model
Data space inversion for efficient uncertainty quantification using an integrated surface and sub-surface hydrologic model
Simulation of crop yield using the global hydrological model H08 (crp.v1)
How is a global sensitivity analysis of a catchment-scale, distributed pesticide transfer model performed? Application to the PESHMELBA model
iHydroSlide3D v1.0: an advanced hydrological–geotechnical model for hydrological simulation and three-dimensional landslide prediction
GEB v0.1: a large-scale agent-based socio-hydrological model – simulating 10 million individual farming households in a fully distributed hydrological model
Tracing and visualisation of contributing water sources in the LISFLOOD-FP model of flood inundation (within CAESAR-Lisflood version 1.9j-WS)
Continental-scale evaluation of a fully distributed coupled land surface and groundwater model, ParFlow-CLM (v3.6.0), over Europe
Evaluating a global soil moisture dataset from a multitask model (GSM3 v1.0) with potential applications for crop threats
SERGHEI (SERGHEI-SWE) v1.0: a performance-portable high-performance parallel-computing shallow-water solver for hydrology and environmental hydraulics
A simple, efficient, mass-conservative approach to solving Richards' equation (openRE, v1.0)
Customized deep learning for precipitation bias correction and downscaling
Implementation and sensitivity analysis of the Dam-Reservoir OPeration model (DROP v1.0) over Spain
Regional coupled surface–subsurface hydrological model fitting based on a spatially distributed minimalist reduction of frequency domain discharge data
Operational water forecast ability of the HRRR-iSnobal combination: an evaluation to adapt into production environments
Prediction of algal blooms via data-driven machine learning models: an evaluation using data from a well-monitored mesotrophic lake
UniFHy v0.1.1: a community modelling framework for the terrestrial water cycle in Python
Basin-scale gyres and mesoscale eddies in large lakes: a novel procedure for their detection and characterization, assessed in Lake Geneva
João António Martins Careto, Rita Margarida Cardoso, Ana Russo, Daniela Catarina André Lima, and Pedro Miguel Matos Soares
Geosci. Model Dev., 17, 8115–8139, https://doi.org/10.5194/gmd-17-8115-2024, https://doi.org/10.5194/gmd-17-8115-2024, 2024
Short summary
Short summary
This study proposes a new daily drought index, the generalised drought index (GDI). The GDI not only identifies the same events as established indices but is also capable of improving their results. The index is empirically based and easy to compute, not requiring fitting the data to a probability distribution. The GDI can detect flash droughts and longer-term events, making it a versatile tool for drought monitoring.
Laura L. Swatridge, Ryan P. Mulligan, Leon Boegman, and Shiliang Shan
Geosci. Model Dev., 17, 7751–7766, https://doi.org/10.5194/gmd-17-7751-2024, https://doi.org/10.5194/gmd-17-7751-2024, 2024
Short summary
Short summary
We develop an operational forecast system, Coastlines-LO, that can simulate water levels and surface waves in Lake Ontario driven by forecasts of wind speeds and pressure fields from an atmospheric model. The model has relatively low computational requirements, and results compare well with near-real-time observations, as well as with results from other existing forecast systems. Results show that with shorter forecast lengths, storm surge and wave predictions can improve in accuracy.
Dapeng Feng, Hylke Beck, Jens de Bruijn, Reetik Kumar Sahu, Yusuke Satoh, Yoshihide Wada, Jiangtao Liu, Ming Pan, Kathryn Lawson, and Chaopeng Shen
Geosci. Model Dev., 17, 7181–7198, https://doi.org/10.5194/gmd-17-7181-2024, https://doi.org/10.5194/gmd-17-7181-2024, 2024
Short summary
Short summary
Accurate hydrologic modeling is vital to characterizing water cycle responses to climate change. For the first time at this scale, we use differentiable physics-informed machine learning hydrologic models to simulate rainfall–runoff processes for 3753 basins around the world and compare them with purely data-driven and traditional modeling approaches. This sets a benchmark for hydrologic estimates around the world and builds foundations for improving global hydrologic simulations.
Matevž Vremec, Raoul A. Collenteur, and Steffen Birk
Geosci. Model Dev., 17, 7083–7103, https://doi.org/10.5194/gmd-17-7083-2024, https://doi.org/10.5194/gmd-17-7083-2024, 2024
Short summary
Short summary
Geoscientists commonly use various potential evapotranpiration (PET) formulas for environmental studies, which can be prone to errors and sensitive to climate change. PyEt, a tested and open-source Python package, simplifies the application of 20 PET methods for both time series and gridded data, ensuring accurate and consistent PET estimations suitable for a wide range of environmental applications.
Nedal Aqel, Lea Reusser, Stephan Margreth, Andrea Carminati, and Peter Lehmann
Geosci. Model Dev., 17, 6949–6966, https://doi.org/10.5194/gmd-17-6949-2024, https://doi.org/10.5194/gmd-17-6949-2024, 2024
Short summary
Short summary
The soil water potential (SWP) determines various soil water processes. Since remote sensing techniques cannot measure it directly, it is often deduced from volumetric water content (VWC) information. However, under dynamic field conditions, the relationship between SWP and VWC is highly ambiguous due to different factors that cannot be modeled with the classical approach. Applying a deep neural network with an autoencoder enables the prediction of the dynamic SWP.
Jenny Kupzig, Nina Kupzig, and Martina Flörke
Geosci. Model Dev., 17, 6819–6846, https://doi.org/10.5194/gmd-17-6819-2024, https://doi.org/10.5194/gmd-17-6819-2024, 2024
Short summary
Short summary
Valid simulation results from global hydrological models (GHMs) are essential, e.g., to studying climate change impacts. Adapting GHMs to ungauged basins requires regionalization, enabling valid simulations. In this study, we highlight the impact of regionalization of GHMs on runoff simulations using an ensemble of regionalization methods for WaterGAP3. We have found that regionalization leads to temporally and spatially varying uncertainty, potentially reaching up to inter-model differences.
Manuel F. Rios Gaona, Katerina Michaelides, and Michael Bliss Singer
Geosci. Model Dev., 17, 5387–5412, https://doi.org/10.5194/gmd-17-5387-2024, https://doi.org/10.5194/gmd-17-5387-2024, 2024
Short summary
Short summary
STORM v.2 (short for STOchastic Rainfall Model version 2.0) is an open-source and user-friendly modelling framework for simulating rainfall fields over a basin. It also allows simulating the impact of plausible climate change either on the total seasonal rainfall or the storm’s maximum intensity.
Lukas Riedel, Thomas Röösli, Thomas Vogt, and David N. Bresch
Geosci. Model Dev., 17, 5291–5308, https://doi.org/10.5194/gmd-17-5291-2024, https://doi.org/10.5194/gmd-17-5291-2024, 2024
Short summary
Short summary
River floods are among the most devastating natural hazards. We propose a flood model with a statistical approach based on openly available data. The model is integrated in a framework for estimating impacts of physical hazards. Although the model only agrees moderately with satellite-detected flood extents, we show that it can be used for forecasting the magnitude of flood events in terms of socio-economic impacts and for comparing these with past events.
Robin Schwemmle, Hannes Leistert, Andreas Steinbrich, and Markus Weiler
Geosci. Model Dev., 17, 5249–5262, https://doi.org/10.5194/gmd-17-5249-2024, https://doi.org/10.5194/gmd-17-5249-2024, 2024
Short summary
Short summary
The new process-based hydrological toolbox model, RoGeR (https://roger.readthedocs.io/), can be used to estimate the components of the hydrological cycle and the related travel times of pollutants through parts of the hydrological cycle. These estimations may contribute to effective water resources management. This paper presents the toolbox concept and provides a simple example of providing estimations to water resources management.
Sarah Hanus, Lilian Schuster, Peter Burek, Fabien Maussion, Yoshihide Wada, and Daniel Viviroli
Geosci. Model Dev., 17, 5123–5144, https://doi.org/10.5194/gmd-17-5123-2024, https://doi.org/10.5194/gmd-17-5123-2024, 2024
Short summary
Short summary
This study presents a coupling of the large-scale glacier model OGGM and the hydrological model CWatM. Projected future increase in discharge is less strong while future decrease in discharge is stronger when glacier runoff is explicitly included in the large-scale hydrological model. This is because glacier runoff is projected to decrease in nearly all basins. We conclude that an improved glacier representation can prevent underestimating future discharge changes in large river basins.
M. Graham Clark and Sean K. Carey
Geosci. Model Dev., 17, 4911–4922, https://doi.org/10.5194/gmd-17-4911-2024, https://doi.org/10.5194/gmd-17-4911-2024, 2024
Short summary
Short summary
This paper provides validation of the Canadian Small Lakes Model (CSLM) for estimating evaporation rates from reservoirs and a refactoring of the original FORTRAN code into MATLAB and Python, which are now stored in GitHub repositories. Here we provide direct observations of the surface energy exchange obtained with an eddy covariance system to validate the CSLM. There was good agreement between observations and estimations except under specific atmospheric conditions when evaporation is low.
Thibault Hallouin, François Bourgin, Charles Perrin, Maria-Helena Ramos, and Vazken Andréassian
Geosci. Model Dev., 17, 4561–4578, https://doi.org/10.5194/gmd-17-4561-2024, https://doi.org/10.5194/gmd-17-4561-2024, 2024
Short summary
Short summary
The evaluation of the quality of hydrological model outputs against streamflow observations is widespread in the hydrological literature. In order to improve on the reproducibility of published studies, a new evaluation tool dedicated to hydrological applications is presented. It is open source and usable in a variety of programming languages to make it as accessible as possible to the community. Thus, authors and readers alike can use the same tool to produce and reproduce the results.
Barnaby Dobson, Leyang Liu, and Ana Mijic
Geosci. Model Dev., 17, 4495–4513, https://doi.org/10.5194/gmd-17-4495-2024, https://doi.org/10.5194/gmd-17-4495-2024, 2024
Short summary
Short summary
Water management is challenging when models don't capture the entire water cycle. We propose that using integrated models facilitates management and improves understanding. We introduce a software tool designed for this task. We discuss its foundation, how it simulates water system components and their interactions, and its customisation. We provide a flexible way to represent water systems, and we hope it will inspire more research and practical applications for sustainable water management.
Qi Tang, Hugo Delottier, Wolfgang Kurtz, Lars Nerger, Oliver S. Schilling, and Philip Brunner
Geosci. Model Dev., 17, 3559–3578, https://doi.org/10.5194/gmd-17-3559-2024, https://doi.org/10.5194/gmd-17-3559-2024, 2024
Short summary
Short summary
We have developed a new data assimilation framework by coupling an integrated hydrological model HydroGeoSphere with the data assimilation software PDAF. Compared to existing hydrological data assimilation systems, the advantage of our newly developed framework lies in its consideration of the physically based model; its large selection of different assimilation algorithms; and its modularity with respect to the combination of different types of observations, states and parameters.
Willem J. van Verseveld, Albrecht H. Weerts, Martijn Visser, Joost Buitink, Ruben O. Imhoff, Hélène Boisgontier, Laurène Bouaziz, Dirk Eilander, Mark Hegnauer, Corine ten Velden, and Bobby Russell
Geosci. Model Dev., 17, 3199–3234, https://doi.org/10.5194/gmd-17-3199-2024, https://doi.org/10.5194/gmd-17-3199-2024, 2024
Short summary
Short summary
We present the wflow_sbm distributed hydrological model, recently released by Deltares, as part of the Wflow.jl open-source modelling framework in the programming language Julia. Wflow_sbm has a fast runtime, making it suitable for large-scale modelling. Wflow_sbm models can be set a priori for any catchment with the Python tool HydroMT-Wflow based on globally available datasets, which results in satisfactory to good performance (without much tuning). We show this for a number of specific cases.
Sanchit Minocha, Faisal Hossain, Pritam Das, Sarath Suresh, Shahzaib Khan, George Darkwah, Hyongki Lee, Stefano Galelli, Konstantinos Andreadis, and Perry Oddo
Geosci. Model Dev., 17, 3137–3156, https://doi.org/10.5194/gmd-17-3137-2024, https://doi.org/10.5194/gmd-17-3137-2024, 2024
Short summary
Short summary
The Reservoir Assessment Tool (RAT) merges satellite data with hydrological models, enabling robust estimation of reservoir parameters like inflow, outflow, surface area, and storage changes around the world. Version 3.0 of RAT lowers the barrier of entry for new users and achieves scalability and computational efficiency. RAT 3.0 also facilitates open-source development of functions for continuous improvement to mobilize and empower the global water management community.
Heloisa Ehalt Macedo, Bernhard Lehner, Jim Nicell, and Günther Grill
Geosci. Model Dev., 17, 2877–2899, https://doi.org/10.5194/gmd-17-2877-2024, https://doi.org/10.5194/gmd-17-2877-2024, 2024
Short summary
Short summary
Treated and untreated wastewaters are sources of contaminants of emerging concern. HydroFATE, a new global model, estimates their concentrations in surface waters, identifying streams that are most at risk and guiding monitoring/mitigation efforts to safeguard aquatic ecosystems and human health. Model predictions were validated against field measurements of the antibiotic sulfamethoxazole, with predicted concentrations exceeding ecological thresholds in more than 400 000 km of rivers worldwide.
Pedro Felipe Arboleda-Obando, Agnès Ducharne, Zun Yin, and Philippe Ciais
Geosci. Model Dev., 17, 2141–2164, https://doi.org/10.5194/gmd-17-2141-2024, https://doi.org/10.5194/gmd-17-2141-2024, 2024
Short summary
Short summary
We show a new irrigation scheme included in the ORCHIDEE land surface model. The new irrigation scheme restrains irrigation due to water shortage, includes water adduction, and represents environmental limits and facilities to access water, due to representing infrastructure in a simple way. Our results show that the new irrigation scheme helps simulate acceptable land surface conditions and fluxes in irrigated areas, even if there are difficulties due to shortcomings and limited information.
Guoqiang Tang, Andrew W. Wood, Andrew J. Newman, Martyn P. Clark, and Simon Michael Papalexiou
Geosci. Model Dev., 17, 1153–1173, https://doi.org/10.5194/gmd-17-1153-2024, https://doi.org/10.5194/gmd-17-1153-2024, 2024
Short summary
Short summary
Ensemble geophysical datasets are crucial for understanding uncertainties and supporting probabilistic estimation/prediction. However, open-access tools for creating these datasets are limited. We have developed the Python-based Geospatial Probabilistic Estimation Package (GPEP). Through several experiments, we demonstrate GPEP's ability to estimate precipitation, temperature, and snow water equivalent. GPEP will be a useful tool to support uncertainty analysis in Earth science applications.
Atabek Umirbekov, Richard Essery, and Daniel Müller
Geosci. Model Dev., 17, 911–929, https://doi.org/10.5194/gmd-17-911-2024, https://doi.org/10.5194/gmd-17-911-2024, 2024
Short summary
Short summary
We present a parsimonious snow model which simulates snow mass without the need for extensive calibration. The model is based on a machine learning algorithm that has been trained on diverse set of daily observations of snow accumulation or melt, along with corresponding climate and topography data. We validated the model using in situ data from numerous new locations. The model provides a promising solution for accurate snow mass estimation across regions where in situ data are limited.
Ciaran J. Harman and Esther Xu Fei
Geosci. Model Dev., 17, 477–495, https://doi.org/10.5194/gmd-17-477-2024, https://doi.org/10.5194/gmd-17-477-2024, 2024
Short summary
Short summary
Over the last 10 years, scientists have developed StorAge Selection: a new way of modeling how material is transported through complex systems. Here, we present some new, easy-to-use, flexible, and very accurate code for implementing this method. We show that, in cases where we know exactly what the answer should be, our code gets the right answer. We also show that our code is closer than some other codes to the right answer in an important way: it conserves mass.
Lele Shu, Paul Ullrich, Xianhong Meng, Christopher Duffy, Hao Chen, and Zhaoguo Li
Geosci. Model Dev., 17, 497–527, https://doi.org/10.5194/gmd-17-497-2024, https://doi.org/10.5194/gmd-17-497-2024, 2024
Short summary
Short summary
Our team developed rSHUD v2.0, a toolkit that simplifies the use of the SHUD, a model simulating water movement in the environment. We demonstrated its effectiveness in two watersheds, one in the USA and one in China. The toolkit also facilitated the creation of the Global Hydrological Data Cloud, a platform for automatic data processing and model deployment, marking a significant advancement in hydrological research.
Jarno Verkaik, Edwin H. Sutanudjaja, Gualbert H. P. Oude Essink, Hai Xiang Lin, and Marc F. P. Bierkens
Geosci. Model Dev., 17, 275–300, https://doi.org/10.5194/gmd-17-275-2024, https://doi.org/10.5194/gmd-17-275-2024, 2024
Short summary
Short summary
This paper presents the parallel PCR-GLOBWB global-scale groundwater model at 30 arcsec resolution (~1 km at the Equator). Named GLOBGM v1.0, this model is a follow-up of the 5 arcmin (~10 km) model, aiming for a higher-resolution simulation of worldwide fresh groundwater reserves under climate change and excessive pumping. For a long transient simulation using a parallel prototype of MODFLOW 6, we show that our implementation is efficient for a relatively low number of processor cores.
Han Qiu, Gautam Bisht, Lingcheng Li, Dalei Hao, and Donghui Xu
Geosci. Model Dev., 17, 143–167, https://doi.org/10.5194/gmd-17-143-2024, https://doi.org/10.5194/gmd-17-143-2024, 2024
Short summary
Short summary
We developed and validated an inter-grid-cell lateral groundwater flow model for both saturated and unsaturated zone in the ELMv2.0 framework. The developed model was benchmarked against PFLOTRAN, a 3D subsurface flow and transport model and showed comparable performance with PFLOTRAN. The developed model was also applied to the Little Washita experimental watershed. The spatial pattern of simulated groundwater table depth agreed well with the global groundwater table benchmark dataset.
Hannes Müller Schmied, Tim Trautmann, Sebastian Ackermann, Denise Cáceres, Martina Flörke, Helena Gerdener, Ellen Kynast, Thedini Asali Peiris, Leonie Schiebener, Maike Schumacher, and Petra Döll
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-213, https://doi.org/10.5194/gmd-2023-213, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
Assessing water availability and water use at the global scale is challenging but essential for a range of purposes. We describe the newest version of the global hydrological model WaterGAP which has been used for numerous water resources assessments since 1996. We show the effects of new model features and model evaluations against observed streamflow and water storage anomalies as well as water abstractions statistics. The publically available model output for several variants is described.
Daniel Boateng and Sebastian G. Mutz
Geosci. Model Dev., 16, 6479–6514, https://doi.org/10.5194/gmd-16-6479-2023, https://doi.org/10.5194/gmd-16-6479-2023, 2023
Short summary
Short summary
We present an open-source Python framework for performing empirical-statistical downscaling of climate information, such as precipitation. The user-friendly package comprises all the downscaling cycles including data preparation, model selection, training, and evaluation, designed in an efficient and flexible manner, allowing for quick and reproducible downscaling products. The framework would contribute to climate change impact assessments by generating accurate high-resolution climate data.
Masaya Yoshikai, Takashi Nakamura, Eugene C. Herrera, Rempei Suwa, Rene Rollon, Raghab Ray, Keita Furukawa, and Kazuo Nadaoka
Geosci. Model Dev., 16, 5847–5863, https://doi.org/10.5194/gmd-16-5847-2023, https://doi.org/10.5194/gmd-16-5847-2023, 2023
Short summary
Short summary
Due to complex root system structures, representing the impacts of Rhizophora mangroves on flow in hydrodynamic models has been challenging. This study presents a new drag and turbulence model that leverages an empirical model for root systems. The model can be applied without rigorous measurements of root structures and showed high performance in flow simulations; this may provide a better understanding of hydrodynamics and related transport processes in Rhizophora mangrove forests.
Hao Chen, Tiejun Wang, Yonggen Zhang, Yun Bai, and Xi Chen
Geosci. Model Dev., 16, 5685–5701, https://doi.org/10.5194/gmd-16-5685-2023, https://doi.org/10.5194/gmd-16-5685-2023, 2023
Short summary
Short summary
Effectively assembling multiple models for approaching a benchmark solution remains a long-standing issue for various geoscience domains. We here propose an automated machine learning-assisted ensemble framework (AutoML-Ens) that attempts to resolve this challenge. Results demonstrate the great potential of AutoML-Ens for improving estimations due to its two unique features, i.e., assigning dynamic weights for candidate models and taking full advantage of AutoML-assisted workflow.
Guta Wakbulcho Abeshu, Fuqiang Tian, Thomas Wild, Mengqi Zhao, Sean Turner, A. F. M. Kamal Chowdhury, Chris R. Vernon, Hongchang Hu, Yuan Zhuang, Mohamad Hejazi, and Hong-Yi Li
Geosci. Model Dev., 16, 5449–5472, https://doi.org/10.5194/gmd-16-5449-2023, https://doi.org/10.5194/gmd-16-5449-2023, 2023
Short summary
Short summary
Most existing global hydrologic models do not explicitly represent hydropower reservoirs. We are introducing a new water management module to Xanthos that distinguishes between the operational characteristics of irrigation, hydropower, and flood control reservoirs. We show that this explicit representation of hydropower reservoirs can lead to a significantly more realistic simulation of reservoir storage and releases in over 44 % of the hydropower reservoirs included in this study.
Javier Diez-Sierra, Salvador Navas, and Manuel del Jesus
Geosci. Model Dev., 16, 5035–5048, https://doi.org/10.5194/gmd-16-5035-2023, https://doi.org/10.5194/gmd-16-5035-2023, 2023
Short summary
Short summary
NEOPRENE is an open-source, freely available library allowing scientists and practitioners to generate synthetic time series and maps of rainfall. These outputs will help to explore plausible events that were never observed in the past but may occur in the near future and to generate possible future events under climate change conditions. The paper shows how to use the library to downscale daily precipitation and how to use synthetic generation to improve our characterization of extreme events.
Adam Pasik, Alexander Gruber, Wolfgang Preimesberger, Domenico De Santis, and Wouter Dorigo
Geosci. Model Dev., 16, 4957–4976, https://doi.org/10.5194/gmd-16-4957-2023, https://doi.org/10.5194/gmd-16-4957-2023, 2023
Short summary
Short summary
We apply the exponential filter (EF) method to satellite soil moisture retrievals to estimate the water content in the unobserved root zone globally from 2002–2020. Quality assessment against an independent dataset shows satisfactory results. Error characterization is carried out using the standard uncertainty propagation law and empirically estimated values of EF model structural uncertainty and parameter uncertainty. This is followed by analysis of temporal uncertainty variations.
Po-Wei Huang, Bernd Flemisch, Chao-Zhong Qin, Martin O. Saar, and Anozie Ebigbo
Geosci. Model Dev., 16, 4767–4791, https://doi.org/10.5194/gmd-16-4767-2023, https://doi.org/10.5194/gmd-16-4767-2023, 2023
Short summary
Short summary
Water in natural environments consists of many ions. Ions are electrically charged and exert electric forces on each other. We discuss whether the electric forces are relevant in describing mixing and reaction processes in natural environments. By comparing our computer simulations to lab experiments in literature, we show that the electric interactions between ions can play an essential role in mixing and reaction processes, in which case they should not be neglected in numerical modeling.
Edward R. Jones, Marc F. P. Bierkens, Niko Wanders, Edwin H. Sutanudjaja, Ludovicus P. H. van Beek, and Michelle T. H. van Vliet
Geosci. Model Dev., 16, 4481–4500, https://doi.org/10.5194/gmd-16-4481-2023, https://doi.org/10.5194/gmd-16-4481-2023, 2023
Short summary
Short summary
DynQual is a new high-resolution global water quality model for simulating total dissolved solids, biological oxygen demand and fecal coliform as indicators of salinity, organic pollution and pathogen pollution, respectively. Output data from DynQual can supplement the observational record of water quality data, which is highly fragmented across space and time, and has the potential to inform assessments in a broad range of fields including ecological, human health and water scarcity studies.
Hugo Delottier, John Doherty, and Philip Brunner
Geosci. Model Dev., 16, 4213–4231, https://doi.org/10.5194/gmd-16-4213-2023, https://doi.org/10.5194/gmd-16-4213-2023, 2023
Short summary
Short summary
Long run times are usually a barrier to the quantification and reduction of predictive uncertainty with complex hydrological models. Data space inversion (DSI) provides an alternative and highly model-run-efficient method for uncertainty quantification. This paper demonstrates DSI's ability to robustly quantify predictive uncertainty and extend the methodology to provide practical metrics that can guide data acquisition and analysis to achieve goals of decision-support modelling.
Zhipin Ai and Naota Hanasaki
Geosci. Model Dev., 16, 3275–3290, https://doi.org/10.5194/gmd-16-3275-2023, https://doi.org/10.5194/gmd-16-3275-2023, 2023
Short summary
Short summary
Simultaneously simulating food production and the requirements and availability of water resources in a spatially explicit manner within a single framework remains challenging on a global scale. Here, we successfully enhanced the global hydrological model H08 that considers human water use and management to simulate the yields of four major staple crops: maize, wheat, rice, and soybean. Our improved model will be beneficial for advancing global food–water nexus studies in the future.
Emilie Rouzies, Claire Lauvernet, Bruno Sudret, and Arthur Vidard
Geosci. Model Dev., 16, 3137–3163, https://doi.org/10.5194/gmd-16-3137-2023, https://doi.org/10.5194/gmd-16-3137-2023, 2023
Short summary
Short summary
Water and pesticide transfer models are complex and should be simplified to be used in decision support. Indeed, these models simulate many spatial processes in interaction, involving a large number of parameters. Sensitivity analysis allows us to select the most influential input parameters, but it has to be adapted to spatial modelling. This study will identify relevant methods that can be transposed to any hydrological and water quality model and improve the fate of pesticide knowledge.
Guoding Chen, Ke Zhang, Sheng Wang, Yi Xia, and Lijun Chao
Geosci. Model Dev., 16, 2915–2937, https://doi.org/10.5194/gmd-16-2915-2023, https://doi.org/10.5194/gmd-16-2915-2023, 2023
Short summary
Short summary
In this study, we developed a novel modeling system called iHydroSlide3D v1.0 by coupling a modified a 3D landslide model with a distributed hydrology model. The model is able to apply flexibly different simulating resolutions for hydrological and slope stability submodules and gain a high computational efficiency through parallel computation. The test results in the Yuehe River basin, China, show a good predicative capability for cascading flood–landslide events.
Jens A. de Bruijn, Mikhail Smilovic, Peter Burek, Luca Guillaumot, Yoshihide Wada, and Jeroen C. J. H. Aerts
Geosci. Model Dev., 16, 2437–2454, https://doi.org/10.5194/gmd-16-2437-2023, https://doi.org/10.5194/gmd-16-2437-2023, 2023
Short summary
Short summary
We present a computer simulation model of the hydrological system and human system, which can simulate the behaviour of individual farmers and their interactions with the water system at basin scale to assess how the systems have evolved and are projected to evolve in the future. For example, we can simulate the effect of subsidies provided on investment in adaptation measures and subsequent effects in the hydrological system, such as a lowering of the groundwater table or reservoir level.
Matthew D. Wilson and Thomas J. Coulthard
Geosci. Model Dev., 16, 2415–2436, https://doi.org/10.5194/gmd-16-2415-2023, https://doi.org/10.5194/gmd-16-2415-2023, 2023
Short summary
Short summary
During flooding, the sources of water that inundate a location can influence impacts such as pollution. However, methods to trace water sources in flood events are currently only available in complex, computationally expensive hydraulic models. We propose a simplified method which can be added to efficient, reduced-complexity model codes, enabling an improved understanding of flood dynamics and its impacts. We demonstrate its application for three sites at a range of spatial and temporal scales.
Bibi S. Naz, Wendy Sharples, Yueling Ma, Klaus Goergen, and Stefan Kollet
Geosci. Model Dev., 16, 1617–1639, https://doi.org/10.5194/gmd-16-1617-2023, https://doi.org/10.5194/gmd-16-1617-2023, 2023
Short summary
Short summary
It is challenging to apply a high-resolution integrated land surface and groundwater model over large spatial scales. In this paper, we demonstrate the application of such a model over a pan-European domain at 3 km resolution and perform an extensive evaluation of simulated water states and fluxes by comparing with in situ and satellite data. This study can serve as a benchmark and baseline for future studies of climate change impact projections and for hydrological forecasting.
Jiangtao Liu, David Hughes, Farshid Rahmani, Kathryn Lawson, and Chaopeng Shen
Geosci. Model Dev., 16, 1553–1567, https://doi.org/10.5194/gmd-16-1553-2023, https://doi.org/10.5194/gmd-16-1553-2023, 2023
Short summary
Short summary
Under-monitored regions like Africa need high-quality soil moisture predictions to help with food production, but it is not clear if soil moisture processes are similar enough around the world for data-driven models to maintain accuracy. We present a deep-learning-based soil moisture model that learns from both in situ data and satellite data and performs better than satellite products at the global scale. These results help us apply our model globally while better understanding its limitations.
Daniel Caviedes-Voullième, Mario Morales-Hernández, Matthew R. Norman, and Ilhan Özgen-Xian
Geosci. Model Dev., 16, 977–1008, https://doi.org/10.5194/gmd-16-977-2023, https://doi.org/10.5194/gmd-16-977-2023, 2023
Short summary
Short summary
This paper introduces the SERGHEI framework and a solver for shallow-water problems. Such models, often used for surface flow and flood modelling, are computationally intense. In recent years the trends to increase computational power have changed, requiring models to adapt to new hardware and new software paradigms. SERGHEI addresses these challenges, allowing surface flow simulation to be enabled on the newest and upcoming consumer hardware and supercomputers very efficiently.
Andrew M. Ireson, Raymond J. Spiteri, Martyn P. Clark, and Simon A. Mathias
Geosci. Model Dev., 16, 659–677, https://doi.org/10.5194/gmd-16-659-2023, https://doi.org/10.5194/gmd-16-659-2023, 2023
Short summary
Short summary
Richards' equation (RE) is used to describe the movement and storage of water in a soil profile and is a component of many hydrological and earth-system models. Solving RE numerically is challenging due to the non-linearities in the properties. Here, we present a simple but effective and mass-conservative solution to solving RE, which is ideal for teaching/learning purposes but also useful in prototype models that are used to explore alternative process representations.
Fang Wang, Di Tian, and Mark Carroll
Geosci. Model Dev., 16, 535–556, https://doi.org/10.5194/gmd-16-535-2023, https://doi.org/10.5194/gmd-16-535-2023, 2023
Short summary
Short summary
Gridded precipitation datasets suffer from biases and coarse resolutions. We developed a customized deep learning (DL) model to bias-correct and downscale gridded precipitation data using radar observations. The results showed that the customized DL model can generate improved precipitation at fine resolutions where regular DL and statistical methods experience challenges. The new model can be used to improve precipitation estimates, especially for capturing extremes at smaller scales.
Malak Sadki, Simon Munier, Aaron Boone, and Sophie Ricci
Geosci. Model Dev., 16, 427–448, https://doi.org/10.5194/gmd-16-427-2023, https://doi.org/10.5194/gmd-16-427-2023, 2023
Short summary
Short summary
Predicting water resource evolution is a key challenge for the coming century.
Anthropogenic impacts on water resources, and particularly the effects of dams and reservoirs on river flows, are still poorly known and generally neglected in global hydrological studies. A parameterized reservoir model is reproduced to compute monthly releases in Spanish anthropized river basins. For global application, an exhaustive sensitivity analysis of the model parameters is performed on flows and volumes.
Nicolas Flipo, Nicolas Gallois, and Jonathan Schuite
Geosci. Model Dev., 16, 353–381, https://doi.org/10.5194/gmd-16-353-2023, https://doi.org/10.5194/gmd-16-353-2023, 2023
Short summary
Short summary
A new approach is proposed to fit hydrological or land surface models, which suffer from large uncertainties in terms of water partitioning between fast runoff and slow infiltration from small watersheds to regional or continental river basins. It is based on the analysis of hydrosystem behavior in the frequency domain, which serves as a basis for estimating water flows in the time domain with a physically based model. It opens the way to significant breakthroughs in hydrological modeling.
Joachim Meyer, John Horel, Patrick Kormos, Andrew Hedrick, Ernesto Trujillo, and S. McKenzie Skiles
Geosci. Model Dev., 16, 233–250, https://doi.org/10.5194/gmd-16-233-2023, https://doi.org/10.5194/gmd-16-233-2023, 2023
Short summary
Short summary
Freshwater resupply from seasonal snow in the mountains is changing. Current water prediction methods from snow rely on historical data excluding the change and can lead to errors. This work presented and evaluated an alternative snow-physics-based approach. The results in a test watershed were promising, and future improvements were identified. Adaptation to current forecast environments would improve resilience to the seasonal snow changes and helps ensure the accuracy of resupply forecasts.
Shuqi Lin, Donald C. Pierson, and Jorrit P. Mesman
Geosci. Model Dev., 16, 35–46, https://doi.org/10.5194/gmd-16-35-2023, https://doi.org/10.5194/gmd-16-35-2023, 2023
Short summary
Short summary
The risks brought by the proliferation of algal blooms motivate the improvement of bloom forecasting tools, but algal blooms are complexly controlled and difficult to predict. Given rapid growth of monitoring data and advances in computation, machine learning offers an alternative prediction methodology. This study tested various machine learning workflows in a dimictic mesotrophic lake and gave promising predictions of the seasonal variations and the timing of algal blooms.
Thibault Hallouin, Richard J. Ellis, Douglas B. Clark, Simon J. Dadson, Andrew G. Hughes, Bryan N. Lawrence, Grenville M. S. Lister, and Jan Polcher
Geosci. Model Dev., 15, 9177–9196, https://doi.org/10.5194/gmd-15-9177-2022, https://doi.org/10.5194/gmd-15-9177-2022, 2022
Short summary
Short summary
A new framework for modelling the water cycle in the land system has been implemented. It considers the hydrological cycle as three interconnected components, bringing flexibility in the choice of the physical processes and their spatio-temporal resolutions. It is designed to foster collaborations between land surface, hydrological, and groundwater modelling communities to develop the next-generation of land system models for integration in Earth system models.
Seyed Mahmood Hamze-Ziabari, Ulrich Lemmin, Frédéric Soulignac, Mehrshad Foroughan, and David Andrew Barry
Geosci. Model Dev., 15, 8785–8807, https://doi.org/10.5194/gmd-15-8785-2022, https://doi.org/10.5194/gmd-15-8785-2022, 2022
Short summary
Short summary
A procedure combining numerical simulations, remote sensing, and statistical analyses is developed to detect large-scale current systems in large lakes. By applying this novel procedure in Lake Geneva, strategies for detailed transect field studies of the gyres and eddies were developed. Unambiguous field evidence of 3D gyre/eddy structures in full agreement with predictions confirmed the robustness of the proposed procedure.
Cited articles
Bastviken, D., Cole, J. J., Pace, M. L., and de Bogert, M. C.: Fates of methane from different lake habitats: Connecting whole-lake budgets and CH4 emissions, J. Geophys. Res.-Biogeo., 113, G02024, https://doi.org/10.1029/2007JG000608, 2008.
Bastviken, D., Tranvik, L. J., Downing, J. A., Crill, P. M., and Enrich-Prast, A.: Freshwater Methane Emissions Offset the Continental Carbon Sink, Science, 331, 50 pp., https://doi.org/10.1126/science.1196808, 2011.
Beljaars, A. C. M. and Holtslag, A. A. M.: Flux Parameterization over Land Surfaces for Atmospheric Models, J. Appl. Meteorol., 30, 327–341, https://doi.org/10.1175/1520-0450(1991)030<0327:FPOLSF>2.0.CO;2, 1991.
Blees, J., Niemann, H., Erne, M., Zopfi, J., Schubert, C. J., and Lehmann, M. F.: Spatial variations in surface water methane super-saturation and emission in Lake Lugano, southern Switzerland, Aquat. Sci., 77, 535–545, https://doi.org/10.1007/s00027-015-0401-z, 2015.
Boegman, L., Ivey, G. N., and Imberger, J.: The degeneration of internal waves in lakes with sloping topography, Limnol. Oceanogr., 50, 1620–1637, https://doi.org/10.4319/lo.2005.50.5.1620, 2005.
Borrel, G., Jézéquel, D., Biderre-Petit, C., Morel-Desrosiers, N., Morel, J.-P., Peyret, P., Fonty, G., and Lehours, A.-C.: Production and consumption of methane in freshwater lake ecosystems, Res. Microbiol., 162, 832–47, https://doi.org/10.1016/j.resmic.2011.06.004, 2011.
Burchard, H.: Applied Turbulence Modelling in Marine Waters, Vol. 100 of Lecture Notes in Earth Sciences, Springer Berlin Heidelberg, Berlin, Heidelberg, https://doi.org/10.1007/3-540-45419-5, 2002.
Burchard, H. and Petersen, O.: Models of turbulence in the marine environment – a comparative study of two-equation turbulence models, J. Marine Syst., 21, 29–53, https://doi.org/10.1016/S0924-7963(99)00004-4, 1999.
Businger, J. A., Wyngaard, J. C., Izumi, Y., and Bradley, E. F.: Flux-Profile Relationships in the Atmospheric Surface Layer, J. Atmos. Sci., 28, 181–189, https://doi.org/10.1175/1520-0469(1971)028<0181:FPRITA>2.0.CO;2, 1971.
Canuto, V. M., Howard, A., Cheng, Y., and Dubovikov, M. S.: Ocean Turbulence. Part I: One-Point Closure Model – Momentum and Heat Vertical Diffusivities, J. Phys. Oceanogr., 31, 1413–1426, https://doi.org/10.1175/1520-0485(2001)031<1413:OTPIOP>2.0.CO;2, 2001.
Chubarenko, I.: Horizontal convection above underwater slopes, Terra Baltica, Kaliningrad, 2010 (in Russian).
Cole, J. J. and Caraco, N. F.: Atmospheric exchange of carbon dioxide in a low-wind oligotrophic lake measured by the addition of SF6, Limnol. Oceanogr., 43, 647–656, https://doi.org/10.4319/lo.1998.43.4.0647, 1998.
Côté, J. and Konrad, J.-M.: A generalized thermal conductivity model for soils and construction materials, Can. Geotech. J., 42, 443–458, https://doi.org/10.1139/t04-106, 2005.
Crank, J. and Nicolson, P.: A practical method for numerical evaluation of solutions of partial differential equations of the heat-conduction type, Adv. Comput. Math., 6, 207–226, https://doi.org/10.1007/BF02127704, 1996.
Damm, E., Helmke, E., Thoms, S., Schauer, U., Nöthig, E., Bakker, K., and Kiene, R. P.: Methane production in aerobic oligotrophic surface water in the central Arctic Ocean, Biogeosciences, 7, 1099–1108, https://doi.org/10.5194/bg-7-1099-2010, 2010.
Donelan, M. A., Drennan, W. M., Saltzman, E. S., and Wanninkhof, R. (Eds.): Gas Transfer at Water Surfaces, Geophysical Monograph Series, American Geophysical Union, Washington, D.C., https://doi.org/10.1029/GM127, 2002.
Downing, J. A., Prairie, Y. T., Cole, J. J., Duarte, C. M., Tranvik, L. J., Striegl, R. G., McDowell, W. H., Kortelainen, P., Caraco, N. F., and Melack, J. M.: The global abundance and size distribution of lakes, ponds, and impoundments, Limnol. Oceanogr., 51, 2388–2397, https://doi.org/10.4319/lo.2006.51.5.2388, 2006.
Dutra, E., Stepanenko, V. M., Balsamo, G., Viterbo, P., Miranda, P. M. A., Mironov, D., and Schär, C.: An offline study of the impact of lakes on the performance of the ECMWF surface scheme, Boreal Environ. Res., 15, 100–112, 2010.
Eerola, K., Rontu, L., Kourzeneva, E., Pour, H. K., and Duguay, C.: Impact of partly ice-free Lake Ladoga on temperature and cloudiness in an anticyclonic winter situation – a case study using a limited area model, Tellus A, 66, 23929, https://doi.org/10.3402/tellusa.v66.23929, 2014.
Fricker, P. D. and Nepf, H. M.: Bathymetry, stratification, and internal seiche structure, J. Geophys. Res., 105, 14237, https://doi.org/10.1029/2000JC900060, 2000.
Gill, A.: Atmosphere-ocean dynamics, Academic Press, New York, London, Paris, San Diego, San Francisco, Sao Paulo, Sydney, Tokyo, Toronto, 1982.
Glazunov, A. and Stepanenko, V. M.: Large Eddy Simulation of Stratified Turbulent Flows over Heterogeneous Natural Landscapes, IZV Atmos. Ocean Phy., 51, 403–415, 2015.
Goudsmit, G.-H.: Application of k − ϵ turbulence models to enclosed basins: The role of internal seiches, J. Geophys. Res., 107, 3230, https://doi.org/10.1029/2001JC000954, 2002.
Guseva, S., Stepanenko, V., Shurpali, N., Biasi, C., Marushchak, M., and Lind, S.: Numerical Simulation of Methane Emission from Subarctic Lake in Komi Republic, Russia, Geography, Environment, Sustainability, accepted, 2016.
Hari, P. and Kulmala, M.: Station for Measuring Ecosystem-Atmosphere Relations (SMEAR II), Boreal Environ. Res., 10, 315–322, 2005.
Heiskanen, J. J., Mammarella, I., Haapanala, S., Pumpanen, J., Vesala, T., MacIntyre, S., and Ojala, A.: Effects of cooling and internal wave motions on gas transfer coefficients in a boreal lake, Tellus B, 66, 22827, https://doi.org/10.3402/tellusb.v66.22827, 2014.
Heiskanen, J. J., Mammarella, I., Ojala, A., Stepanenko, V., Erkkilä, K.-M., Miettinen, H., Sandström, H., Eugster, W., Leppäranta, M., Järvinen, H., Vesala, T., and Nordbo, A.: Effects of water clarity on lake stratification and lake-atmosphere heat exchange, J. Geophys. Res.-Atmos., 120, 7412–7428, https://doi.org/10.1002/2014JD022938, 2015.
Hostetler, S. W. and Bartlein, P. J.: Simulation of lake evaporation with application to modeling lake level variations of Harney-Malheur Lake, Oregon, Water Resour. Res., 26, 2603–2612, https://doi.org/10.1029/WR026i010p02603, 1990.
Hutter, K., Wang, Y., and Chubarenko, I. P.: Physics of Lakes. Volume 2: Lakes as Oscillators, Springer-Verlag, Berlin Heidelberg, 1st Edn., https://doi.org/10.1007/978-3-642-19112-1, 2011.
Huttunen, J. T., Väisänen, T. S., Hellsten, S. K., and Martikainen, P. J.: Methane fluxes at the sediment-water interface in some boreal lakes and reservoirs, Boreal Environ. Res., 11, 27–34, 2006.
Imberger, J. and Patterson, J. C.: Physical Limnology, Vol. 27 of Advances in Applied Mechanics, 303–475, Elsevier, https://doi.org/10.1016/S0065-2156(08)70199-6, 1989.
Jamialahmadi, M., Branch, C., and Müller-Steinhagen, J.: Terminal bubble rise velocity in liquids, Trans. Inst. Chem. Eng., 72, 119–122, 1994.
Jöhnk, K. D.: 1D Hydrodynamische Modelle in der Limnophysik. Turbulenz – Meromixis – Sauerstoff, Tech. rep., Insitute of Limnophysics, University of Amsterdam, Amsterdam, 2001.
Jönhk, K. D., Huisman, J., Sharples, J., Sommeijer, B., Visser, P. M., and Stroom, J. M.: Summer heatwaves promote blooms of harmful cyanobacteria, Glob. Change Biol., 14, 495–512, https://doi.org/10.1111/j.1365-2486.2007.01510.x, 2008.
Juutinen, S., Rantakari, M., Kortelainen, P., Huttunen, J. T., Larmola, T., Alm, J., Silvola, J., and Martikainen, P. J.: Methane dynamics in different boreal lake types, Biogeosciences, 6, 209–223, https://doi.org/10.5194/bg-6-209-2009, 2009.
Kessler, M. A., Plug, L. J., and Walter Anthony, K. M.: Simulating the decadal- to millennial-scale dynamics of morphology and sequestered carbon mobilization of two thermokarst lakes in NW Alaska, J. Geophys. Res.-Biogeo., 117, G00M06, https://doi.org/10.1029/2011JG001796, 2012.
Kirillin, G., Forrest, A., Graves, K., Fischer, A., Engelhardt, C., and Laval, B.: Axisymmetric circulation driven by marginal heating in ice-covered lakes, Geophys. Res. Lett., 42, 2893–2900, https://doi.org/10.1002/2014GL062180, 2015.
Lidstrom, M. E. and Somers, L.: Seasonal study of methane oxidation in lake washington, Appl. Environ. Microbiol., 47, 1255–1260, 1984.
Liikanen, A., Murtoniemi, T., Tanskanen, H., Väisänen, T., and Martikainen, P. J.: Effects of temperature and oxygen availability on greenhouse gas and nutrient dynamics in sediment of a eutrophic mid-boreal lake, Biogeochemistry, 59, 269–286, https://doi.org/10.1023/A:1016015526712, 2002.
Lofton, D. D., Whalen, S. C., and Hershey, A. E.: Effect of temperature on methane dynamics and evaluation of methane oxidation kinetics in shallow Arctic Alaskan lakes, Hydrobiologia, 721, 209–222, https://doi.org/10.1007/s10750-013-1663-x, 2013.
MacIntyre, S., Clark, J. F., Jellison, R., and Fram, J.: Turbulent mixing induced by nonlinear internal waves in Mono Lake, California, Limnol. Oceanogr., 54, 2255–2272, https://doi.org/10.4319/lo.2009.54.6.2255, 2009.
MacIntyre, S., Jonsson, A., Jansson, M., Aberg, J., Turney, D. E., and Miller, S. D.: Buoyancy flux, turbulence, and the gas transfer coefficient in a stratified lake, Geophys. Res. Lett., 37, L24604, https://doi.org/10.1029/2010GL044164, 2010.
Mammarella, I., Nordbo, A., Rannik, U., Haapanala, S., Levula, J., Laakso, H., Ojala, A., Peltola, O., Heiskanen, J., Pumpanen, J., and Vesala, T.: Carbon dioxide and energy fluxes over a small boreal lake in Southern Finland, J. Geophys. Res.-Biogeo., 120, 1296–1314, https://doi.org/10.1002/2014JG002873, 2015.
Markfort, C. D., Porté-Agel, F., and Stefan, H. G.: Canopy-wake dynamics and wind sheltering effects on Earth surface fluxes, Environ. Fluid Mech., 14, 663–697, https://doi.org/10.1007/s10652-013-9313-4, 2013.
Martinez-Cruz, K., Sepulveda-Jauregui, A., Walter Anthony, K., and Thalasso, F.: Geographic and seasonal variation of dissolved methane and aerobic methane oxidation in Alaskan lakes, Biogeosciences, 12, 4595–4606, https://doi.org/10.5194/bg-12-4595-2015, 2015.
Martynov, A., Sushama, L., Laprise, R., Winger, K., and Dugas, B.: Interactive lakes in the Canadian Regional Climate Model, version 5: the role of lakes in the regional climate of North America, Tellus A, 64, 16226, https://doi.org/10.3402/tellusa.v64i0.16226, 2012.
McGinnis, D., Greinert, J., Artemov, Y., Beaubien, S., and Wüest, A.: The fate of rising methane bubbles in stratified waters: what fraction reaches the atmosphere?, J. Geophys. Res., 111, C09007, https://doi.org/10.1029/2005JC003183, 2006.
Mellor, G. L.: Retrospect on oceanic boundary layer modeling and second moment closure, in: Parameterization of Small–Scale Processes; Proc. of the Aha Hulikoa Hawaiian Winter Workshop, edited by Müller, P. and Henderson, D., pp. 251–271, Univ. of Hawaii at Manoa, Honolulu, 1989.
Melton, J. R., Wania, R., Hodson, E. L., Poulter, B., Ringeval, B., Spahni, R., Bohn, T., Avis, C. A., Beerling, D. J., Chen, G., Eliseev, A. V., Denisov, S. N., Hopcroft, P. O., Lettenmaier, D. P., Riley, W. J., Singarayer, J. S., Subin, Z. M., Tian, H., Zürcher, S., Brovkin, V., van Bodegom, P. M., Kleinen, T., Yu, Z. C., and Kaplan, J. O.: Present state of global wetland extent and wetland methane modelling: conclusions from a model inter-comparison project (WETCHIMP), Biogeosciences, 10, 753–788, https://doi.org/10.5194/bg-10-753-2013, 2013.
Merian, J.: Ueber die Bewegung tropfbarer Flüssigkeiten in Gefässen [On the motion of drippable liquids in containers, PhD thesis, Basel, Schweighauser, 1828.
Miettinen, H., Pumpanen, J., Heiskanen, J. J., Aaltonen, H., Mammarella, I., Ojala, A., Levula, J., and Rantakari, M.: Towards a more comprehensive understanding of lacustrine greenhouse gas dynamics – two-year measurements of concentrations and fluxes of CO2, CH4 and N2O in a typical boreal lake surrounded by managed forests, Boreal Environ. Res., 20, 75–89, 2015.
Mironov, D., Heise, E., Kourzeneva, E., and Ritter, B.: Implementation of the lake parameterisation scheme FLake into the numerical weather prediction model COSMO, Boreal Environ. Res., 15, 218–230, 2010.
Mortimer, C. H.: The resonant response of stratified lakes to wind, Schweiz. Z. Hydrol., 15, 94–151, https://doi.org/10.1007/BF02486219, 1953.
Münnich, M., Wüest, A., and Imboden, D. M.: Observations of the second vertical mode of the internal seiche in an alpine lake, Limnol. Oceanogr., 37, 1705–1719, https://doi.org/10.4319/lo.1992.37.8.1705, 1992.
Nordbo, A., Launiainen, S., Mammarella, I., Leppäranta, M., Huotari, J., Ojala, A., and Vesala, T.: Long-term energy flux measurements and energy balance over a small boreal lake using eddy covariance technique, J. Geophys. Res.-Atmos., 116, D02119, https://doi.org/10.1029/2010JD014542, 2011.
Omstedt, A.: Guide to Process Based Modeling of Lakes and Coastal Seas, Springer-Verlag, Berlin Heidelberg, 2011.
Patterson, J. C., Hamblin, P. F., and Imberger, J.: Classification and dynamic simulation of the vertical density structure of lakes, Limnol. Oceanogr., 29, 845–861, https://doi.org/10.4319/lo.1984.29.4.0845, 1984.
Paulson, C. A.: The Mathematical Representation of Wind Speed and Temperature Profiles in the Unstable Atmospheric Surface Layer, J. Appl. Meteorol., 9, 857–861, https://doi.org/10.1175/1520-0450(1970)009<0857:TMROWS>2.0.CO;2, 1970.
Rontu, L., Eerola, K., Kourzeneva, E., and Vehviläinen, B.: Data assimilation and parametrisation of lakes in HIRLAM, Tellus A, 64, 17611, https://doi.org/10.3402/tellusa.v64i0.17611, 2012.
Saggio, A. and Imberger, J.: Mixing and turbulent fluxes in the metalimnion of a stratified lake, Limnol. Oceanogr., 46, 392–409, https://doi.org/10.4319/lo.2001.46.2.0392, 2001.
Sander, R.: Henry's law constants, Tech. rep., available at: http://www.henrys-law.org/henry-3.0.pdf (last access: 26 May 2016), 1999.
Scandella, B. P., Varadharajan, C., Hemond, H. F., Ruppel, C., and Juanes, R.: A conduit dilation model of methane venting from lake sediments, Geophys. Res. Lett., 38, L06408, https://doi.org/10.1029/2011GL046768, 2011.
Schilder, J., Bastviken, D., van Hardenbroek, M., Kankaala, P., Rinta, P., Stötter, T., and Heiri, O.: Spatial heterogeneity and lake morphology affect diffusive greenhouse gas emission estimates of lakes, Geophys. Res. Lett., 40, 5752–5756, https://doi.org/10.1002/2013GL057669, 2013.
Shintani, T., de la Fuente, A., Niño, Y., and Imberger, J.: Generalizations of the Wedderburn number: Parameterizing upwelling in stratified lakes, Limnol. Oceanogr., 55, 1377–1389, https://doi.org/10.4319/lo.2010.55.3.1377, 2010.
Stefan, H. G. and Fang, X.: Dissolved oxygen model for regional lake analysis, Ecol. Model., 71, 37–68, https://doi.org/10.1016/0304-3800(94)90075-2, 1994.
Stepanenko, V., Jöhnk, K., Machulskaya, E., Perroud, M., Subin, Z., Nordbo, A., Mammarella, I., and Mironov, D.: Simulation of surface energy fluxes and stratification of a small boreal lake by a set of one-dimensional models, Tellus A, 66, 21389, https://doi.org/10.3402/tellusa.v66.21389, 2014.
Stepanenko, V. M. and Lykossov, V. N.: Numerical modeling of heat and moisture transfer processes in a system lake–soil, Russ. Meteorol. Hydrol., 3, 95–104, 2005.
Stepanenko, V. M., Martynov, A., Goyette, S., Fang, X., Perroud, M., and Mironov, D.: First steps of a Lake Model Intercomparison Project, Boreal Environ. Res., 15, 191–202, 2010.
Stepanenko, V. M., Machul'skaya, E. E., Glagolev, M. V., and Lykossov, V. N.: Numerical modeling of methane emissions from lakes in the permafrost zone, Izvestiya, Atmos. Ocean. Phys., 47, 252–264, https://doi.org/10.1134/S0001433811020113, 2011.
Stepanenko, V. M., Martynov, A., Jöhnk, K. D., Subin, Z. M., Perroud, M., Fang, X., Beyrich, F., Mironov, D., and Goyette, S.: A one-dimensional model intercomparison study of thermal regime of a shallow, turbid midlatitude lake, Geosci. Model Dev., 6, 1337–1352, https://doi.org/10.5194/gmd-6-1337-2013, 2013.
Subin, Z. M., Murphy, L. N., Li, F., Bonfils, C., and Riley, W. J.: Boreal lakes moderate seasonal and diurnal temperature variation and perturb atmospheric circulation: analyses in the Community Earth System Model 1 (CESM1), Tellus A, 64, 15639, https://doi.org/10.3402/tellusa.v64i0.15639, 2012.
Svensson, U.: A mathematical model of the seasonal thermocline, PhD Lund Inst. of Technol., 1978.
Tan, Z. and Zhuang, Q.: Arctic lakes are continuous methane sources to the atmosphere under warming conditions, Environ. Res. Lett., 10, 054016, https://doi.org/10.1088/1748-9326/10/5/054016, 2015a.
Tan, Z. and Zhuang, Q.: Arctic lakes are continuous methane sources to the atmosphere under warming conditions, Environ. Res. Lett., 10, 054016, https://doi.org/10.1088/1748-9326/10/5/054016, 2015b.
Tan, Z., Zhuang, Q., and Walter Anthony, K.: Modeling methane emissions from arctic lakes: Model development and site-level study, J. Adv. Model. Earth Syst., 7, 459–483, https://doi.org/10.1002/2014MS000344, 2015.
Tranvik, L. J., Downing, J. A., Cotner, J. B., Loiselle, S. A., Striegl, R. G., Ballatore, T. J., Dillon, P., Finlay, K., Fortino, K., Knoll, L. B., Kortelainen, P. L., Kutser, T., Larsen, S., Laurion, I., Leech, D. M., McCallister, S. L., McKnight, D. M., Melack, J. M., Overholt, E., Porter, J. A., Prairie, Y., Renwick, W. H., Roland, F., Sherman, B. S., Schindler, D. W., Sobek, S., Tremblay, A., Vanni, M. J., Verschoor, A. M., von Wachenfeldt, E., and Weyhenmeyer, G. A.: Lakes and reservoirs as regulators of carbon cycling and climate, Limnol. Oceanogr., 54, 2298–2314, https://doi.org/10.4319/lo.2009.54.6_part_2.2298, 2009.
Walker, R. R. and Snodgrass, W. J.: Model for Sediment Oxygen Demand in Lakes, J. Environ. Eng., 112, 25–43, https://doi.org/10.1061/(ASCE)0733-9372(1986)112:1(25), 1986.
Walter, B., Heimann, M., and Shannon, R.: A Process Based Model to Derive Methane Emissions from Natural Wetlands, Tech. rep., Max Planck Institut fur Meteorologie, Hamburg, 1996.
Walter, B. P. and Heimann, M.: A process-based, climate-sensitive model to derive methane emissions from natural wetlands: Application to five wetland sites, sensitivity to model parameters, and climate, Global Biogeochem. Cy., 14, 745–765, https://doi.org/10.1029/1999GB001204, 2000.
Wania, R., Ross, I., and Prentice, I. C.: Integrating peatlands and permafrost into a dynamic global vegetation model: 1. Evaluation and sensitivity of physical land surface processes, Global Biogeochem. Cy., 23, GB3014, https://doi.org/10.1029/2008GB003412, 2009.
Wüest, A. and Lorke, A.: SMALL-SCALE HYDRODYNAMICS IN LAKES, Annu. Rev. Fluid Mech., 35, 373–412, 2003.
Wüest, A., Piepke, G., and Van Senden, D. C.: Turbulent kinetic energy balance as a tool for estimating vertical diffusivity in wind-forced stratified waters, Limnol. Oceanogr., 45, 1388–1400, https://doi.org/10.4319/lo.2000.45.6.1388, 2000.
Yamamoto, A., Yamanaka, Y., and Tajika, E.: Modeling of methane bubbles released from large sea-floor area: Condition required for methane emission to the atmosphere, Earth Planet. Sc. Lett., 284, 590–598, https://doi.org/10.1016/j.epsl.2009.05.026, 2009.
Yvon-Durocher, G., Allen, A. P., Bastviken, D., Conrad, R., Gudasz, C., St-Pierre, A., Thanh-Duc, N., and del Giorgio, P. A.: Methane fluxes show consistent temperature dependence across microbial to ecosystem scales, Nature, 507, 488–491, https://doi.org/10.1038/nature13164, 2014.
Zheng, L. and Yapa, P. D.: Modeling gas dissolution in deepwater oil/gas spills, J. Mar. Syst., 31, 299–309, 2002.
Zilitinkevich, S. S., Elperin, T., Kleeorin, N., Rogachevskii, I., and Esau, I.: A Hierarchy of Energy- and Flux-Budget (EFB) Turbulence Closure Models for Stably-Stratified Geophysical Flows, Bound.-Lay. Meteorol., 146, 341–373, https://doi.org/10.1007/s10546-012-9768-8, 2012.
Zinoviev, A.: Mathematical modeling of hydrological processes in reservoirs and downstream of hydropower stations of Siberian rivers, PhD thesis, Institute for Water and Ecological Problems, Siberian Branch of RAS, 2014.
Short summary
A 1-D lake model is presented, reproducing temperature, oxygen, carbon dioxide and methane. All prognostic variables are treated in unified manner via generic 1-D transport equation. The model is validated vs. comprehensive observational data set gathered at Kuivajärvi Lake (Finland). Our results suggest that a gas transfer through thermocline under intense seiche motions is a bottleneck in quantifying greenhouse gas dynamics in dimictic lakes, calling for further research.
A 1-D lake model is presented, reproducing temperature, oxygen, carbon dioxide and methane. All...
