Articles | Volume 13, issue 1
https://doi.org/10.5194/gmd-13-55-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-13-55-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
| 
07 Jan 2020
Development and technical paper |
| 07 Jan 2020
| 07 Jan 2020
The Land Variational Ensemble Data Assimilation Framework: LAVENDAR v1.0.0
Ewan Pinnington
CORRESPONDING AUTHOR
National Centre for Earth Observation, Department of Meteorology, University of Reading, Reading, UK
Tristan Quaife
National Centre for Earth Observation, Department of Meteorology, University of Reading, Reading, UK
School of Mathematical, Physical and Computational Sciences, University Of Reading, Reading, UK
Amos Lawless
National Centre for Earth Observation, Department of Meteorology, University of Reading, Reading, UK
School of Mathematical, Physical and Computational Sciences, University Of Reading, Reading, UK
Karina Williams
Met Office Hadley Centre, Exeter, UK
Tim Arkebauer
Department of Agronomy and Horticulture, University of Nebraska–Lincoln, Lincoln, Nebraska, USA
Dave Scoby
Department of Agronomy and Horticulture, University of Nebraska–Lincoln, Lincoln, Nebraska, USA
Related authors
Elizabeth Cooper, Eleanor Blyth, Hollie Cooper, Rich Ellis, Ewan Pinnington, and Simon J. Dadson
Hydrol. Earth Syst. Sci., 25, 2445–2458, https://doi.org/10.5194/hess-25-2445-2021, https://doi.org/10.5194/hess-25-2445-2021, 2021
Short summary
Short summary
Soil moisture estimates from land surface models are important for forecasting floods, droughts, weather, and climate trends. We show that by combining model estimates of soil moisture with measurements from field-scale, ground-based sensors, we can improve the performance of the land surface model in predicting soil moisture values.
Ewan Pinnington, Javier Amezcua, Elizabeth Cooper, Simon Dadson, Rich Ellis, Jian Peng, Emma Robinson, Ross Morrison, Simon Osborne, and Tristan Quaife
Hydrol. Earth Syst. Sci., 25, 1617–1641, https://doi.org/10.5194/hess-25-1617-2021, https://doi.org/10.5194/hess-25-1617-2021, 2021
Short summary
Short summary
Land surface models are important tools for translating meteorological forecasts and reanalyses into real-world impacts at the Earth's surface. We show that the hydrological predictions, in particular soil moisture, of these models can be improved by combining them with satellite observations from the NASA SMAP mission to update uncertain parameters. We find a 22 % reduction in error at a network of in situ soil moisture sensors after combining model predictions with satellite observations.
Ewan Pinnington, Tristan Quaife, and Emily Black
Hydrol. Earth Syst. Sci., 22, 2575–2588, https://doi.org/10.5194/hess-22-2575-2018, https://doi.org/10.5194/hess-22-2575-2018, 2018
Short summary
Short summary
This paper combines satellite observations of precipitation and soil moisture to understand what key information they offer to improve land surface model estimates of soil moisture over Ghana. When both observations are combined with the chosen land surface model we reduce the unbiased root-mean-squared error in a 5-year model hindcast by 27 %; this bodes well for the production of improved soil moisture estimates over sub-Saharan Africa where subsistence farming remains prevalent.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, Luke Smallmann, Susan Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zähle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek El-Madany, Mirco Migliavacca, Marika Honkanen, Yann Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaetan Pique, Amanda Ojasalo, Shaun Quegan, Peter Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
EGUsphere, https://doi.org/10.5194/egusphere-2024-1534, https://doi.org/10.5194/egusphere-2024-1534, 2024
Short summary
Short summary
When it comes to climate change, the land surfaces are where the vast majority of impacts happen. The task of monitoring those across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us see what changes on our lands.
Jozef Skakala, David Ford, Keith Haines, Amos Lawless, Matthew Martin, Philip Browne, Marcin Chrust, Stefano Ciavatta, Alison Fowler, Daniel Lea, Matthew Palmer, Andrea Rochner, Jennifer Waters, Hao Zuo, Mike Bell, Davi Carneiro, Yumeng Chen, Susan Kay, Dale Partridge, Martin Price, Richard Renshaw, Georgy Shapiro, and James While
EGUsphere, https://doi.org/10.5194/egusphere-2024-1737, https://doi.org/10.5194/egusphere-2024-1737, 2024
Short summary
Short summary
In this paper we review marine data assimilation (MDA) in the UK, its stakeholders, needs, past and present developments in different areas of UK MDA, and offer a vision for their longer future. The specific areas covered are ocean physics and sea ice, marine biogeochemistry, coupled MDA, MDA informing observing network design and MDA theory. We also discuss future vision for MDA resources: observations, software, hardware and people skills.
Yumeng Chen, Lars Nerger, and Amos S. Lawless
EGUsphere, https://doi.org/10.5194/egusphere-2024-1078, https://doi.org/10.5194/egusphere-2024-1078, 2024
Short summary
Short summary
In this paper, we present pyPDAF, a Python interface to the parallel data assimilation framework (PDAF) allowing for coupling with Python-based models. We demonstrate the capability and efficiency of pyPDAF under a coupled data assimilation setup.
Bethan L. Harris, Tristan Quaife, Christopher M. Taylor, and Phil P. Harris
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2024-2, https://doi.org/10.5194/esd-2024-2, 2024
Revised manuscript accepted for ESD
Short summary
Short summary
The response of vegetation productivity to rainfall is a crucial process linking the water and carbon cycles and influencing the evolution of the climate system. However, there are many uncertainties in its representation in Earth System Models. This work uses a range of Earth Observation products to show that these models produce very different vegetation productivity responses to short-term rainfall events due to their differing sensitivities to processes driving water availability.
Lee de Mora, Ranjini Swaminathan, Richard P. Allan, Jerry C. Blackford, Douglas I. Kelley, Phil Harris, Chris D. Jones, Colin G. Jones, Spencer Liddicoat, Robert J. Parker, Tristan Quaife, Jeremy Walton, and Andrew Yool
Earth Syst. Dynam., 14, 1295–1315, https://doi.org/10.5194/esd-14-1295-2023, https://doi.org/10.5194/esd-14-1295-2023, 2023
Short summary
Short summary
We investigate the flux of carbon from the atmosphere into the land surface and ocean for multiple models and over a range of future scenarios. We did this by comparing simulations after the same change in the global-mean near-surface temperature. Using this method, we show that the choice of scenario can impact the carbon allocation to the land, ocean, and atmosphere. Scenarios with higher emissions reach the same warming levels sooner, but also with relatively more carbon in the atmosphere.
Camilla Mathison, Eleanor Burke, Andrew J. Hartley, Douglas I. Kelley, Chantelle Burton, Eddy Robertson, Nicola Gedney, Karina Williams, Andy Wiltshire, Richard J. Ellis, Alistair A. Sellar, and Chris D. Jones
Geosci. Model Dev., 16, 4249–4264, https://doi.org/10.5194/gmd-16-4249-2023, https://doi.org/10.5194/gmd-16-4249-2023, 2023
Short summary
Short summary
This paper describes and evaluates a new modelling methodology to quantify the impacts of climate change on water, biomes and the carbon cycle. We have created a new configuration and set-up for the JULES-ES land surface model, driven by bias-corrected historical and future climate model output provided by the Inter-Sectoral Impacts Model Intercomparison Project (ISIMIP). This allows us to compare projections of the impacts of climate change across multiple impact models and multiple sectors.
Samantha Petch, Bo Dong, Tristan Quaife, Robert P. King, and Keith Haines
Hydrol. Earth Syst. Sci., 27, 1723–1744, https://doi.org/10.5194/hess-27-1723-2023, https://doi.org/10.5194/hess-27-1723-2023, 2023
Short summary
Short summary
Gravitational measurements of water storage from GRACE (Gravity Recovery and Climate Experiment) can improve understanding of the water budget. We produce flux estimates over large river catchments based on observations that close the monthly water budget and ensure consistency with GRACE on short and long timescales. We use energy data to provide additional constraints and balance the long-term energy budget. These flux estimates are important for evaluating climate models.
Anna B. Harper, Karina E. Williams, Patrick C. McGuire, Maria Carolina Duran Rojas, Debbie Hemming, Anne Verhoef, Chris Huntingford, Lucy Rowland, Toby Marthews, Cleiton Breder Eller, Camilla Mathison, Rodolfo L. B. Nobrega, Nicola Gedney, Pier Luigi Vidale, Fred Otu-Larbi, Divya Pandey, Sebastien Garrigues, Azin Wright, Darren Slevin, Martin G. De Kauwe, Eleanor Blyth, Jonas Ardö, Andrew Black, Damien Bonal, Nina Buchmann, Benoit Burban, Kathrin Fuchs, Agnès de Grandcourt, Ivan Mammarella, Lutz Merbold, Leonardo Montagnani, Yann Nouvellon, Natalia Restrepo-Coupe, and Georg Wohlfahrt
Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, https://doi.org/10.5194/gmd-14-3269-2021, 2021
Short summary
Short summary
We evaluated 10 representations of soil moisture stress in the JULES land surface model against site observations of GPP and latent heat flux. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES. In addition, using soil matric potential presents the opportunity to include parameters specific to plant functional type to further improve modeled fluxes.
Elizabeth Cooper, Eleanor Blyth, Hollie Cooper, Rich Ellis, Ewan Pinnington, and Simon J. Dadson
Hydrol. Earth Syst. Sci., 25, 2445–2458, https://doi.org/10.5194/hess-25-2445-2021, https://doi.org/10.5194/hess-25-2445-2021, 2021
Short summary
Short summary
Soil moisture estimates from land surface models are important for forecasting floods, droughts, weather, and climate trends. We show that by combining model estimates of soil moisture with measurements from field-scale, ground-based sensors, we can improve the performance of the land surface model in predicting soil moisture values.
Ewan Pinnington, Javier Amezcua, Elizabeth Cooper, Simon Dadson, Rich Ellis, Jian Peng, Emma Robinson, Ross Morrison, Simon Osborne, and Tristan Quaife
Hydrol. Earth Syst. Sci., 25, 1617–1641, https://doi.org/10.5194/hess-25-1617-2021, https://doi.org/10.5194/hess-25-1617-2021, 2021
Short summary
Short summary
Land surface models are important tools for translating meteorological forecasts and reanalyses into real-world impacts at the Earth's surface. We show that the hydrological predictions, in particular soil moisture, of these models can be improved by combining them with satellite observations from the NASA SMAP mission to update uncertain parameters. We find a 22 % reduction in error at a network of in situ soil moisture sensors after combining model predictions with satellite observations.
Camilla Mathison, Andrew J. Challinor, Chetan Deva, Pete Falloon, Sébastien Garrigues, Sophie Moulin, Karina Williams, and Andy Wiltshire
Geosci. Model Dev., 14, 437–471, https://doi.org/10.5194/gmd-14-437-2021, https://doi.org/10.5194/gmd-14-437-2021, 2021
Short summary
Short summary
Sequential cropping (also known as multiple or double cropping) is a common cropping system, particularly in tropical regions. Typically, land surface models only simulate a single crop per year. To understand how sequential crops influence surface fluxes, we implement sequential cropping in JULES to simulate all the crops grown within a year at a given location in a seamless way. We demonstrate the method using a site in Avignon, four locations in India and a regional run for two Indian states.
Felix Leung, Karina Williams, Stephen Sitch, Amos P. K. Tai, Andy Wiltshire, Jemma Gornall, Elizabeth A. Ainsworth, Timothy Arkebauer, and David Scoby
Geosci. Model Dev., 13, 6201–6213, https://doi.org/10.5194/gmd-13-6201-2020, https://doi.org/10.5194/gmd-13-6201-2020, 2020
Short summary
Short summary
Ground-level ozone (O3) is detrimental to plant productivity and crop yield. Currently, the Joint UK Land Environment Simulator (JULES) includes a representation of crops (JULES-crop). The parameters for O3 damage in soybean in JULES-crop were calibrated against photosynthesis measurements from the Soybean Free Air Concentration Enrichment (SoyFACE). The result shows good performance for yield, and it helps contribute to understanding of the impacts of climate and air pollution on food security.
James A. Franke, Christoph Müller, Joshua Elliott, Alex C. Ruane, Jonas Jägermeyr, Abigail Snyder, Marie Dury, Pete D. Falloon, Christian Folberth, Louis François, Tobias Hank, R. Cesar Izaurralde, Ingrid Jacquemin, Curtis Jones, Michelle Li, Wenfeng Liu, Stefan Olin, Meridel Phillips, Thomas A. M. Pugh, Ashwan Reddy, Karina Williams, Ziwei Wang, Florian Zabel, and Elisabeth J. Moyer
Geosci. Model Dev., 13, 3995–4018, https://doi.org/10.5194/gmd-13-3995-2020, https://doi.org/10.5194/gmd-13-3995-2020, 2020
Short summary
Short summary
Improving our understanding of the impacts of climate change on crop yields will be critical for global food security in the next century. The models often used to study the how climate change may impact agriculture are complex and costly to run. In this work, we describe a set of global crop model emulators (simplified models) developed under the Agricultural Model Intercomparison Project. Crop model emulators make agricultural simulations more accessible to policy or decision makers.
Simon Jones, Lucy Rowland, Peter Cox, Deborah Hemming, Andy Wiltshire, Karina Williams, Nicholas C. Parazoo, Junjie Liu, Antonio C. L. da Costa, Patrick Meir, Maurizio Mencuccini, and Anna B. Harper
Biogeosciences, 17, 3589–3612, https://doi.org/10.5194/bg-17-3589-2020, https://doi.org/10.5194/bg-17-3589-2020, 2020
Short summary
Short summary
Non-structural carbohydrates (NSCs) are an important set of molecules that help plants to grow and respire when photosynthesis is restricted by extreme climate events. In this paper we present a simple model of NSC storage and assess the effect that it has on simulations of vegetation at the ecosystem scale. Our model has the potential to significantly change predictions of plant behaviour in global vegetation models, which would have large implications for predictions of the future climate.
James A. Franke, Christoph Müller, Joshua Elliott, Alex C. Ruane, Jonas Jägermeyr, Juraj Balkovic, Philippe Ciais, Marie Dury, Pete D. Falloon, Christian Folberth, Louis François, Tobias Hank, Munir Hoffmann, R. Cesar Izaurralde, Ingrid Jacquemin, Curtis Jones, Nikolay Khabarov, Marian Koch, Michelle Li, Wenfeng Liu, Stefan Olin, Meridel Phillips, Thomas A. M. Pugh, Ashwan Reddy, Xuhui Wang, Karina Williams, Florian Zabel, and Elisabeth J. Moyer
Geosci. Model Dev., 13, 2315–2336, https://doi.org/10.5194/gmd-13-2315-2020, https://doi.org/10.5194/gmd-13-2315-2020, 2020
Short summary
Short summary
Concerns about food security under climate change motivate efforts to better understand future changes in crop yields. Crop models, which represent plant biology, are necessary tools for this purpose since they allow representing future climate, farmer choices, and new agricultural geographies. The Global Gridded Crop Model Intercomparison (GGCMI) Phase 2 experiment, under the Agricultural Model Intercomparison and Improvement Project (AgMIP), is designed to evaluate and improve crop models.
Karina E. Williams, Anna B. Harper, Chris Huntingford, Lina M. Mercado, Camilla T. Mathison, Pete D. Falloon, Peter M. Cox, and Joon Kim
Geosci. Model Dev., 12, 3207–3240, https://doi.org/10.5194/gmd-12-3207-2019, https://doi.org/10.5194/gmd-12-3207-2019, 2019
Short summary
Short summary
Data from the First ISLSCP Field Experiment, 1987–1989, is used to assess how well the JULES land-surface model simulates water stress in tallgrass prairie vegetation. We find that JULES simulates a decrease in key carbon and water cycle variables during the dry period, as expected, but that it does not capture the shape of the diurnal cycle on these days. These results will be used to inform future model development as part of wider evaluation efforts.
Anna B. Harper, Andrew J. Wiltshire, Peter M. Cox, Pierre Friedlingstein, Chris D. Jones, Lina M. Mercado, Stephen Sitch, Karina Williams, and Carolina Duran-Rojas
Geosci. Model Dev., 11, 2857–2873, https://doi.org/10.5194/gmd-11-2857-2018, https://doi.org/10.5194/gmd-11-2857-2018, 2018
Short summary
Short summary
Dynamic global vegetation models are used for studying historical and future changes to vegetation and the terrestrial carbon cycle. JULES is a DGVM that represents the land surface in the UK Earth System Model. We compared simulated gross and net primary productivity of vegetation, vegetation distribution, and aspects of the transient carbon cycle to observational datasets. JULES was able to accurately reproduce many aspects of the terrestrial carbon cycle with the recent improvements.
Dagmawi Asfaw, Emily Black, Matthew Brown, Kathryn Jane Nicklin, Frederick Otu-Larbi, Ewan Pinnington, Andrew Challinor, Ross Maidment, and Tristan Quaife
Geosci. Model Dev., 11, 2353–2371, https://doi.org/10.5194/gmd-11-2353-2018, https://doi.org/10.5194/gmd-11-2353-2018, 2018
Short summary
Short summary
TAMSAT-ALERT is a framework for combining observational and forecast information into continually updated assessments of the likelihood of user-defined adverse events like low cumulative rainfall or lower than average crop yield. It is easy to use and flexible to accommodate any impact model that uses meteorological data. The results show that it can be used to monitor the meteorological impact on yield within a growing season and to test the value of routinely issued seasonal forecasts.
Ewan Pinnington, Tristan Quaife, and Emily Black
Hydrol. Earth Syst. Sci., 22, 2575–2588, https://doi.org/10.5194/hess-22-2575-2018, https://doi.org/10.5194/hess-22-2575-2018, 2018
Short summary
Short summary
This paper combines satellite observations of precipitation and soil moisture to understand what key information they offer to improve land surface model estimates of soil moisture over Ghana. When both observations are combined with the chosen land surface model we reduce the unbiased root-mean-squared error in a 5-year model hindcast by 27 %; this bodes well for the production of improved soil moisture estimates over sub-Saharan Africa where subsistence farming remains prevalent.
Robin J. Hogan, Tristan Quaife, and Renato Braghiere
Geosci. Model Dev., 11, 339–350, https://doi.org/10.5194/gmd-11-339-2018, https://doi.org/10.5194/gmd-11-339-2018, 2018
Short summary
Short summary
This paper describes a fast new method for calculating how much sunlight is absorbed and reflected by forests and other types of vegetation, rigorously taking account of the complex 3-D structure. Careful evaluation shows it to perform well even in difficult scenes with snow on the ground. The method is suitable for use within the computer models used to make weather and climate forecasts, where it has the potential to improve predictions of near-surface temperature and photosynthesis rates.
Karina Williams, Jemma Gornall, Anna Harper, Andy Wiltshire, Debbie Hemming, Tristan Quaife, Tim Arkebauer, and David Scoby
Geosci. Model Dev., 10, 1291–1320, https://doi.org/10.5194/gmd-10-1291-2017, https://doi.org/10.5194/gmd-10-1291-2017, 2017
Short summary
Short summary
This study looks in detail at how well the crop model within the Joint UK Land Environment Simulator (JULES), a community land-surface model, is able to simulate irrigated maize in Nebraska. We use the results to point to future priorities for model development and describe how our methodology can be adapted to set up model runs for other sites and crop varieties.
Michael B. Butts, Carlo Buontempo, Jens K. Lørup, Karina Williams, Camilla Mathison, Oluf Z. Jessen, Niels D. Riegels, Paul Glennie, Carol McSweeney, Mark Wilson, Richard Jones, and Abdulkarim H. Seid
Proc. IAHS, 374, 3–7, https://doi.org/10.5194/piahs-374-3-2016, https://doi.org/10.5194/piahs-374-3-2016, 2016
Short summary
Short summary
The Nile Basin is one of the most important shared basins in Africa. Managing it's water resources, now and in the future, must not only address different water uses but also the trade-off between developments upstream and water use downstream, often between different countries. This paper presents a methodology, to support climate adaptation on a regional scale, for assessing climate change impacts and adaptation potential for floods, droughts and water scarcity within this basin.
William Alexander Avery, Catherine Finkenbiner, Trenton E. Franz, Tiejun Wang, Anthony L. Nguy-Robertson, Andrew Suyker, Timothy Arkebauer, and Francisco Muñoz-Arriola
Hydrol. Earth Syst. Sci., 20, 3859–3872, https://doi.org/10.5194/hess-20-3859-2016, https://doi.org/10.5194/hess-20-3859-2016, 2016
Short summary
Short summary
Here we present a strategy to use globally available datasets in the calibration function used to convert observed moderated neutron counts into volumetric soil water content. While local sampling protocols are well documented for fixed probes, the use of roving probes presents new calibration challenges. With over 200 fixed probes and 10 roving probes in use globally, we anticipate this paper will serve as a keystone for the growing cosmic-ray neutron probe and hydrologic community.
K. E. Williams and P. D. Falloon
Geosci. Model Dev., 8, 3987–3997, https://doi.org/10.5194/gmd-8-3987-2015, https://doi.org/10.5194/gmd-8-3987-2015, 2015
T. Osborne, J. Gornall, J. Hooker, K. Williams, A. Wiltshire, R. Betts, and T. Wheeler
Geosci. Model Dev., 8, 1139–1155, https://doi.org/10.5194/gmd-8-1139-2015, https://doi.org/10.5194/gmd-8-1139-2015, 2015
A. Loew, P. M. van Bodegom, J.-L. Widlowski, J. Otto, T. Quaife, B. Pinty, and T. Raddatz
Biogeosciences, 11, 1873–1897, https://doi.org/10.5194/bg-11-1873-2014, https://doi.org/10.5194/bg-11-1873-2014, 2014
Related subject area
Numerical methods
Consistent point data assimilation in Firedrake and Icepack
A computationally efficient parameterization of aerosol, cloud and precipitation pH for application at global and regional scale (EQSAM4Clim-v12)
Assessing the benefits of approximately exact step sizes for Picard and Newton solver in simulating ice flow (FEniCS-full-Stokes v.1.3.2)
Assessing effects of climate and technology uncertainties in large natural resource allocation problems
VISIR-2: ship weather routing in Python
Incremental analysis update (IAU) in the Model for Prediction Across Scales coupled with the Joint Effort for Data assimilation Integration (MPAS–JEDI 2.0.0)
Decision-making strategies implemented in SolFinder 1.0 to identify eco-efficient aircraft trajectories: application study in AirTraf 3.0
Developing meshing workflows in Gmsh v4.11 for the geologic uncertainty assessment of high-temperature aquifer thermal energy storage
Development and preliminary validation of a land surface image assimilation system based on the Common Land Model
NorSand4AI: a comprehensive triaxial test simulation database for NorSand constitutive model materials
ParticleDA.jl v.1.0: a distributed particle-filtering data assimilation package
HETerogeneous vectorized or Parallel (HETPv1.0): an updated inorganic heterogeneous chemistry solver for the metastable-state NH4+–Na+–Ca2+–K+–Mg2+–SO42−–NO3−–Cl−–H2O system based on ISORROPIA II
Three-dimensional geological modelling of igneous intrusions in LoopStructural v1.5.10
Estimating volcanic ash emissions using retrieved satellite ash columns and inverse ash transport modeling using VolcanicAshInversion v1.2.1, within the operational eEMEP (emergency European Monitoring and Evaluation Programme) volcanic plume forecasting system (version rv4_17)
Accounting for uncertainties in forecasting tropical-cyclone-induced compound flooding
An automatic mesh generator for coupled 1D–2D hydrodynamic models
Numerical coupling of aerosol emissions, dry removal, and turbulent mixing in the E3SM Atmosphere Model version 1 (EAMv1) – Part 1: Dust budget analyses and the impacts of a revised coupling scheme
Numerical coupling of aerosol emissions, dry removal, and turbulent mixing in the E3SM Atmosphere Model version 1 (EAMv1) – Part 2: A semi-discrete error analysis framework for assessing coupling schemes
jsmetrics v0.2.0: a Python package for metrics and algorithms used to identify or characterise atmospheric jet streams
P3D-BRNS v1.0.0: a three-dimensional, multiphase, multicomponent, pore-scale reactive transport modelling package for simulating biogeochemical processes in subsurface environments
MinVoellmy v1: a lightweight model for simulating rapid mass movements based on a modified Voellmy rheology
Scalable Feature Extraction and Tracking (SCAFET): a general framework for feature extraction from large climate data sets
Sweep interpolation: a cost-effective semi-Lagrangian scheme in the Global Environmental Multiscale model
CHONK 1.0: landscape evolution framework: cellular automata meets graph theory
Perspectives of physics-based machine learning strategies for geoscientific applications governed by partial differential equations
Calibration of absorbing boundary layers for geoacoustic wave modeling in pseudo-spectral time-domain methods
GeoINR 1.0: an implicit neural network approach to three-dimensional geological modelling
Modelling chemical advection during magma ascent
Numerical stabilization methods for level-set-based ice front migration
A comparison of Eulerian and Lagrangian methods for vertical particle transport in the water column
AutoQS v1: automatic parametrization of QuickSampling based on training images analysis
Implementation and application of ensemble optimal interpolation on an operational chemistry weather model for improving PM2.5 and visibility predictions
A dynamical core based on a discontinuous Galerkin method for higher-order finite-element sea ice modeling
GStatSim V1.0: a Python package for geostatistical interpolation and conditional simulation
Leveraging Google's Tensor Processing Units for tsunami-risk mitigation planning in the Pacific Northwest and beyond
An improved subgrid channel model with upwind-form artificial diffusion for river hydrodynamics and floodplain inundation simulation
A model instability issue in the National Centers for Environmental Prediction Global Forecast System version 16 and potential solutions
A comparison of 3-D spherical shell thermal convection results at low to moderate Rayleigh number using ASPECT (version 2.2.0) and CitcomS (version 3.3.1)
LISFLOOD-FP 8.1: new GPU-accelerated solvers for faster fluvial/pluvial flood simulations
Measurement Error Proxy System Models: MEPSM v0.2
Fast approximate Barnes interpolation: illustrated by Python-Numba implementation fast-barnes-py v1.0
Strategies for conservative and non-conservative monotone remapping on the sphere
Modeling large‐scale landform evolution with a stream power law for glacial erosion (OpenLEM v37): benchmarking experiments against a more process-based description of ice flow (iSOSIA v3.4.3)
A mixed finite-element discretisation of the shallow-water equations
Multifidelity Monte Carlo estimation for efficient uncertainty quantification in climate-related modeling
Massively parallel modeling and inversion of electrical resistivity tomography data using PFLOTRAN
Parallelized domain decomposition for multi-dimensional Lagrangian random walk mass-transfer particle tracking schemes
The Intelligent Prospector v1.0: geoscientific model development and prediction by sequential data acquisition planning with application to mineral exploration
Predicting peak daily maximum 8 h ozone and linkages to emissions and meteorology in Southern California using machine learning methods (SoCAB-8HR V1.0)
Transfer learning for landslide susceptibility modeling using domain adaptation and case-based reasoning
Reuben W. Nixon-Hill, Daniel Shapero, Colin J. Cotter, and David A. Ham
Geosci. Model Dev., 17, 5369–5386, https://doi.org/10.5194/gmd-17-5369-2024, https://doi.org/10.5194/gmd-17-5369-2024, 2024
Short summary
Short summary
Scientists often use models to study complex processes, like the movement of ice sheets, and compare them to measurements for estimating quantities that are hard to measure. We highlight an approach that ensures accurate results from point data sources (e.g. height measurements) by evaluating the numerical solution at true point locations. This method improves accuracy, aids communication between scientists, and is well-suited for integration with specialised software that automates processes.
Swen Metzger, Samuel Rémy, Jason E. Williams, Vincent Huijnen, and Johannes Flemming
Geosci. Model Dev., 17, 5009–5021, https://doi.org/10.5194/gmd-17-5009-2024, https://doi.org/10.5194/gmd-17-5009-2024, 2024
Short summary
Short summary
EQSAM4Clim has recently been revised to provide an accurate and efficient method for calculating the acidity of atmospheric particles. It is based on an analytical concept that is sufficiently fast and free of numerical noise, which makes it attractive for air quality forecasting. Version 12 allows the calculation of aerosol composition based on the gas–liquid–solid and the reduced gas–liquid partitioning with the associated water uptake for both cases, including the acidity of the aerosols.
Niko Schmidt, Angelika Humbert, and Thomas Slawig
Geosci. Model Dev., 17, 4943–4959, https://doi.org/10.5194/gmd-17-4943-2024, https://doi.org/10.5194/gmd-17-4943-2024, 2024
Short summary
Short summary
Future sea-level rise is of big significance for coastal regions. The melting and acceleration of glaciers plays a major role in sea-level change. Computer simulation of glaciers costs a lot of computational resources. In this publication, we test a new way of simulating glaciers. This approach produces the same results but has the advantage that it needs much less computation time. As simulations can be obtained with fewer computation resources, higher resolution and physics become affordable.
Jevgenijs Steinbuks, Yongyang Cai, Jonas Jaegermeyr, and Thomas W. Hertel
Geosci. Model Dev., 17, 4791–4819, https://doi.org/10.5194/gmd-17-4791-2024, https://doi.org/10.5194/gmd-17-4791-2024, 2024
Short summary
Short summary
This paper applies a cutting-edge numerical method, SCEQ, to show how uncertain climate change and technological progress affect the future utilization of the world's scarce land resources. The paper's key insight is to illustrate how much global cropland will expand when future crop yields are unknown. The study finds the range of outcomes for land use change to be smaller when using this novel method compared to existing deterministic models.
Gianandrea Mannarini, Mario Leonardo Salinas, Lorenzo Carelli, Nicola Petacco, and Josip Orović
Geosci. Model Dev., 17, 4355–4382, https://doi.org/10.5194/gmd-17-4355-2024, https://doi.org/10.5194/gmd-17-4355-2024, 2024
Short summary
Short summary
Ship weather routing has the potential to reduce CO2 emissions, but it currently lacks open and verifiable research. The Python-refactored VISIR-2 model considers currents, waves, and wind to optimise routes. The model was validated, and its computational performance is quasi-linear. For a ferry sailing in the Mediterranean Sea, VISIR-2 yields the largest percentage emission savings for upwind navigation. Given the vessel performance curve, the model is generalisable across various vessel types.
Soyoung Ha, Jonathan J. Guerrette, Ivette Hernández Baños, William C. Skamarock, and Michael G. Duda
Geosci. Model Dev., 17, 4199–4211, https://doi.org/10.5194/gmd-17-4199-2024, https://doi.org/10.5194/gmd-17-4199-2024, 2024
Short summary
Short summary
To mitigate the imbalances in the initial conditions, this study introduces our recent implementation of the incremental analysis update (IAU) in the Model for Prediction Across Scales – Atmospheric (MPAS-A) component coupled with the Joint Effort for Data assimilation Integration (JEDI) through the cycling system. A month-long cycling run demonstrates the successful implementation of the IAU capability in the MPAS–JEDI cycling system.
Federica Castino, Feijia Yin, Volker Grewe, Hiroshi Yamashita, Sigrun Matthes, Simone Dietmüller, Sabine Baumann, Manuel Soler, Abolfazl Simorgh, Maximilian Mendiguchia Meuser, Florian Linke, and Benjamin Lührs
Geosci. Model Dev., 17, 4031–4052, https://doi.org/10.5194/gmd-17-4031-2024, https://doi.org/10.5194/gmd-17-4031-2024, 2024
Short summary
Short summary
We introduce SolFinder 1.0, a decision-making tool to select trade-offs between different objective functions for optimal aircraft trajectories, including fuel use, flight time, NOx emissions, contrail distance, and climate impact. The module is included in the AirTraf 3.0 submodel and uses weather conditions simulated by the EMAC atmospheric model. This paper focuses on the ability of SolFinder to identify eco-efficient trajectories, reducing a flight's climate impact at limited cost penalties.
Ali Dashti, Jens C. Grimmer, Christophe Geuzaine, Florian Bauer, and Thomas Kohl
Geosci. Model Dev., 17, 3467–3485, https://doi.org/10.5194/gmd-17-3467-2024, https://doi.org/10.5194/gmd-17-3467-2024, 2024
Short summary
Short summary
This study developed new meshing workflows to enable the automatic generation of meshes that follow geological models. The workflow allows for importing several geological models as input for Gmsh and later exporting the same number of high-quality meshes. This way, geological uncertainty is directly included in the numerical simulations. This study evaluates the impact of the geological uncertainty on thermohydraulic performance of two reservoirs for high-temperature heat storage applications.
Wangbin Shen, Zhaohui Lin, Zhengkun Qin, and Juan Li
Geosci. Model Dev., 17, 3447–3465, https://doi.org/10.5194/gmd-17-3447-2024, https://doi.org/10.5194/gmd-17-3447-2024, 2024
Short summary
Short summary
In this study, a land surface image assimilation system capable of optimizing the spatial structure of the background field is constructed by introducing the curvelet analysis method and taking the similarity of image structure as a weak constraint. The findings demonstrate that the assimilation of surface soil moisture observation images effectively and reasonably enhances the spatial structure of soil moisture analysis field.
Luan Carlos de Sena Monteiro Ozelim, Michéle Dal Toé Casagrande, and André Luís Brasil Cavalcante
Geosci. Model Dev., 17, 3175–3197, https://doi.org/10.5194/gmd-17-3175-2024, https://doi.org/10.5194/gmd-17-3175-2024, 2024
Short summary
Short summary
The paper addresses synthetic dataset challenges in nonlinear constitutive modeling of soils, providing two datasets: one with 2000 soil types, 40 test conditions each (160 000 triaxial tests), and a second with 2048 soil types, 42 test conditions each (172 032 triaxial tests). Each dataset is a 4000×10 matrix applicable for multivariate forecasting and geotechnical simulations. In addition, a new Python code is introduced, empowering researchers to leverage Python packages for NorSand analyses.
Daniel Giles, Matthew M. Graham, Mosè Giordano, Tuomas Koskela, Alexandros Beskos, and Serge Guillas
Geosci. Model Dev., 17, 2427–2445, https://doi.org/10.5194/gmd-17-2427-2024, https://doi.org/10.5194/gmd-17-2427-2024, 2024
Short summary
Short summary
Digital twins of physical and human systems informed by real-time data are becoming ubiquitous across a wide range of settings. Progress for researchers is currently limited by a lack of tools to run these models effectively and efficiently. A key challenge is the optimal use of high-performance computing environments. The work presented here focuses on a developed open-source software platform which aims to improve this usage, with an emphasis placed on flexibility, efficiency, and scalability.
Stefan J. Miller, Paul A. Makar, and Colin J. Lee
Geosci. Model Dev., 17, 2197–2219, https://doi.org/10.5194/gmd-17-2197-2024, https://doi.org/10.5194/gmd-17-2197-2024, 2024
Short summary
Short summary
This work outlines a new solver written in Fortran to calculate the partitioning of metastable aerosols at thermodynamic equilibrium based on the forward algorithms of ISORROPIA II. The new code includes numerical improvements that decrease the computational speed (compared to ISORROPIA II) while improving the accuracy of the partitioning solution.
Fernanda Alvarado-Neves, Laurent Ailleres, Lachlan Grose, Alexander R. Cruden, and Robin Armit
Geosci. Model Dev., 17, 1975–1993, https://doi.org/10.5194/gmd-17-1975-2024, https://doi.org/10.5194/gmd-17-1975-2024, 2024
Short summary
Short summary
Previous work has demonstrated that adding geological knowledge to modelling methods creates more accurate and reliable models. Following this reasoning, we added constraints from magma emplacement mechanisms into existing modelling frameworks to improve the 3D characterisation of igneous intrusions. We tested the method on synthetic and real-world case studies, and the results show that our method can reproduce intrusion morphologies with no manual processing and using realistic datasets.
André R. Brodtkorb, Anna Benedictow, Heiko Klein, Arve Kylling, Agnes Nyiri, Alvaro Valdebenito, Espen Sollum, and Nina Kristiansen
Geosci. Model Dev., 17, 1957–1974, https://doi.org/10.5194/gmd-17-1957-2024, https://doi.org/10.5194/gmd-17-1957-2024, 2024
Short summary
Short summary
It is vital to know the extent and concentration of volcanic ash in the atmosphere during a volcanic eruption. Whilst satellite imagery may give an estimate of the ash right now (assuming no cloud coverage), we also need to know where it will be in the coming hours. This paper presents a method for estimating parameters for a volcanic eruption based on satellite observations of ash in the atmosphere. The software package is open source and applicable to similar inversion scenarios.
Kees Nederhoff, Maarten van Ormondt, Jay Veeramony, Ap van Dongeren, José Antonio Álvarez Antolínez, Tim Leijnse, and Dano Roelvink
Geosci. Model Dev., 17, 1789–1811, https://doi.org/10.5194/gmd-17-1789-2024, https://doi.org/10.5194/gmd-17-1789-2024, 2024
Short summary
Short summary
Forecasting tropical cyclones and their flooding impact is challenging. Our research introduces the Tropical Cyclone Forecasting Framework (TC-FF), enhancing cyclone predictions despite uncertainties. TC-FF generates global wind and flood scenarios, valuable even in data-limited regions. Applied to cases like Cyclone Idai, it showcases potential in bettering disaster preparation, marking progress in handling cyclone threats.
Younghun Kang and Ethan J. Kubatko
Geosci. Model Dev., 17, 1603–1625, https://doi.org/10.5194/gmd-17-1603-2024, https://doi.org/10.5194/gmd-17-1603-2024, 2024
Short summary
Short summary
Models used to simulate the flow of coastal and riverine waters, including flooding, require a geometric representation (or mesh) of geographic features that exhibit a range of disparate spatial scales from large, open waters to small, narrow channels. Representing these features in an accurate way without excessive computational overhead presents a challenge. Here, we develop an automatic mesh generation tool to help address this challenge. Our results demonstrate the efficacy of our approach.
Hui Wan, Kai Zhang, Christopher J. Vogl, Carol S. Woodward, Richard C. Easter, Philip J. Rasch, Yan Feng, and Hailong Wang
Geosci. Model Dev., 17, 1387–1407, https://doi.org/10.5194/gmd-17-1387-2024, https://doi.org/10.5194/gmd-17-1387-2024, 2024
Short summary
Short summary
Sophisticated numerical models of the Earth's atmosphere include representations of many physical and chemical processes. In numerical simulations, these processes need to be calculated in a certain sequence. This study reveals the weaknesses of the sequence of calculations used for aerosol processes in a global atmosphere model. A revision of the sequence is proposed and its impacts on the simulated global aerosol climatology are evaluated.
Christopher J. Vogl, Hui Wan, Carol S. Woodward, and Quan M. Bui
Geosci. Model Dev., 17, 1409–1428, https://doi.org/10.5194/gmd-17-1409-2024, https://doi.org/10.5194/gmd-17-1409-2024, 2024
Short summary
Short summary
Generally speaking, accurate climate simulation requires an accurate evolution of the underlying mathematical equations on large computers. The equations are typically formulated and evolved in process groups. Process coupling refers to how the evolution of each group is combined with that of other groups to evolve the full set of equations for the whole atmosphere. This work presents a mathematical framework to evaluate methods without the need to first implement the methods.
Tom Keel, Chris Brierley, and Tamsin Edwards
Geosci. Model Dev., 17, 1229–1247, https://doi.org/10.5194/gmd-17-1229-2024, https://doi.org/10.5194/gmd-17-1229-2024, 2024
Short summary
Short summary
Jet streams are an important control on surface weather as their speed and shape can modify the properties of weather systems. Establishing trends in the operation of jet streams may provide some indication of the future of weather in a warming world. Despite this, it has not been easy to establish trends, as many methods have been used to characterise them in data. We introduce a tool containing various implementations of jet stream statistics and algorithms that works in a standardised manner.
Amir Golparvar, Matthias Kästner, and Martin Thullner
Geosci. Model Dev., 17, 881–898, https://doi.org/10.5194/gmd-17-881-2024, https://doi.org/10.5194/gmd-17-881-2024, 2024
Short summary
Short summary
Coupled reaction transport modelling is an established and beneficial method for studying natural and synthetic porous material, with applications ranging from industrial processes to natural decompositions in terrestrial environments. Up to now, a framework that explicitly considers the porous structure (e.g. from µ-CT images) for modelling the transport of reactive species is missing. We presented a model that overcomes this limitation and represents a novel numerical simulation toolbox.
Stefan Hergarten
Geosci. Model Dev., 17, 781–794, https://doi.org/10.5194/gmd-17-781-2024, https://doi.org/10.5194/gmd-17-781-2024, 2024
Short summary
Short summary
The Voellmy rheology has been widely used for simulating snow and rock avalanches. Recently, a modified version of this rheology was proposed, which turned out to be able to predict the observed long runout of large rock avalanches theoretically. The software MinVoellmy presented here is the first numerical implementation of the modified rheology. It consists of MATLAB and Python classes, where simplicity and parsimony were the design goals.
Arjun Babu Nellikkattil, Danielle Lemmon, Travis Allen O'Brien, June-Yi Lee, and Jung-Eun Chu
Geosci. Model Dev., 17, 301–320, https://doi.org/10.5194/gmd-17-301-2024, https://doi.org/10.5194/gmd-17-301-2024, 2024
Short summary
Short summary
This study introduces a new computational framework called Scalable Feature Extraction and Tracking (SCAFET), designed to extract and track features in climate data. SCAFET stands out by using innovative shape-based metrics to identify features without relying on preconceived assumptions about the climate model or mean state. This approach allows more accurate comparisons between different models and scenarios.
Mohammad Mortezazadeh, Jean-François Cossette, Ashu Dastoor, Jean de Grandpré, Irena Ivanova, and Abdessamad Qaddouri
Geosci. Model Dev., 17, 335–346, https://doi.org/10.5194/gmd-17-335-2024, https://doi.org/10.5194/gmd-17-335-2024, 2024
Short summary
Short summary
The interpolation process is the most computationally expensive step of the semi-Lagrangian (SL) approach. In this paper we implement a new interpolation scheme into the semi-Lagrangian approach which has the same computational cost as a third-order polynomial scheme but with the accuracy of a fourth-order interpolation scheme. This improvement is achieved by using two third-order backward and forward polynomial interpolation schemes in two consecutive time steps.
Boris Gailleton, Luca C. Malatesta, Guillaume Cordonnier, and Jean Braun
Geosci. Model Dev., 17, 71–90, https://doi.org/10.5194/gmd-17-71-2024, https://doi.org/10.5194/gmd-17-71-2024, 2024
Short summary
Short summary
This contribution presents a new method to numerically explore the evolution of mountain ranges and surrounding areas. The method helps in monitoring with details on the timing and travel path of material eroded from the mountain ranges. It is particularly well suited to studies juxtaposing different domains – lakes or multiple rock types, for example – and enables the combination of different processes.
Denise Degen, Daniel Caviedes Voullième, Susanne Buiter, Harrie-Jan Hendricks Franssen, Harry Vereecken, Ana González-Nicolás, and Florian Wellmann
Geosci. Model Dev., 16, 7375–7409, https://doi.org/10.5194/gmd-16-7375-2023, https://doi.org/10.5194/gmd-16-7375-2023, 2023
Short summary
Short summary
In geosciences, we often use simulations based on physical laws. These simulations can be computationally expensive, which is a problem if simulations must be performed many times (e.g., to add error bounds). We show how a novel machine learning method helps to reduce simulation time. In comparison to other approaches, which typically only look at the output of a simulation, the method considers physical laws in the simulation itself. The method provides reliable results faster than standard.
Carlos Spa, Otilio Rojas, and Josep de la Puente
Geosci. Model Dev., 16, 7237–7252, https://doi.org/10.5194/gmd-16-7237-2023, https://doi.org/10.5194/gmd-16-7237-2023, 2023
Short summary
Short summary
This paper develops a calibration methodology of all absorbing techniques typically used by Fourier pseudo-spectral time-domain (PSTD) methods for geoacoustic wave simulations. The main contributions of the paper are (a) an implementation and quantitative comparison of all absorbing techniques available for PSTD methods through a simple and robust numerical experiment, and (b) a validation of these absorbing techniques in several 3-D seismic scenarios with gradual heterogeneity complexities.
Michael Hillier, Florian Wellmann, Eric A. de Kemp, Boyan Brodaric, Ernst Schetselaar, and Karine Bédard
Geosci. Model Dev., 16, 6987–7012, https://doi.org/10.5194/gmd-16-6987-2023, https://doi.org/10.5194/gmd-16-6987-2023, 2023
Short summary
Short summary
Neural networks can be used effectively to model three-dimensional geological structures from point data, sampling geological interfaces, units, and structural orientations. Existing neural network approaches for this type of modelling are advanced by the efficient incorporation of unconformities, new knowledge inputs, and improved data fitting techniques. These advances permit the modelling of more complex geology in diverse geological settings, different-sized areas, and various data regimes.
Hugo Dominguez, Nicolas Riel, and Pierre Lanari
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-189, https://doi.org/10.5194/gmd-2023-189, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
Predicting the behaviour of magmatic systems is important for understanding Earth's matter and heat transport. Numerical modelling is a technique that can predict complex systems at different scales of space and time, by solving equations using various techniques. This study tests four algorithms to find the best way to transport the melt composition. The "Weighted Essentially Non-Oscillatory" algorithm emerges as the best choice, minimizing errors and preserving system mass.
Gong Cheng, Mathieu Morlighem, and G. Hilmar Gudmundsson
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-194, https://doi.org/10.5194/gmd-2023-194, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
We conducted a comprehensive analysis of the stabilization and reinitialization techniques currently employed in ISSM and Ua for solving level-set equations, specifically those related to the dynamic representation of moving ice fronts within numerical ice sheet models. Our results demonstrate that the Streamline Upwinding Petrov Galerkin (SUPG) method outperforms the other approaches. We found that excessively frequent reinitialization can lead to exceptionally high errors in simulations.
Tor Nordam, Ruben Kristiansen, Raymond Nepstad, Erik van Sebille, and Andy M. Booth
Geosci. Model Dev., 16, 5339–5363, https://doi.org/10.5194/gmd-16-5339-2023, https://doi.org/10.5194/gmd-16-5339-2023, 2023
Short summary
Short summary
We describe and compare two common methods, Eulerian and Lagrangian models, used to simulate the vertical transport of material in the ocean. They both solve the same transport problems but use different approaches for representing the underlying equations on the computer. The main focus of our study is on the numerical accuracy of the two approaches. Our results should be useful for other researchers creating or using these types of transport models.
Mathieu Gravey and Grégoire Mariethoz
Geosci. Model Dev., 16, 5265–5279, https://doi.org/10.5194/gmd-16-5265-2023, https://doi.org/10.5194/gmd-16-5265-2023, 2023
Short summary
Short summary
Multiple‐point geostatistics are widely used to simulate complex spatial structures based on a training image. The use of these methods relies on the possibility of finding optimal training images and parametrization of the simulation algorithms. Here, we propose finding an optimal set of parameters using only the training image as input. The main advantage of our approach is to remove the risk of overfitting an objective function.
Siting Li, Ping Wang, Hong Wang, Yue Peng, Zhaodong Liu, Wenjie Zhang, Hongli Liu, Yaqiang Wang, Huizheng Che, and Xiaoye Zhang
Geosci. Model Dev., 16, 4171–4191, https://doi.org/10.5194/gmd-16-4171-2023, https://doi.org/10.5194/gmd-16-4171-2023, 2023
Short summary
Short summary
Optimizing the initial state of atmospheric chemistry model input is one of the most essential methods to improve forecast accuracy. Considering the large computational load of the model, we introduce an ensemble optimal interpolation scheme (EnOI) for operational use and efficient updating of the initial fields of chemical components. The results suggest that EnOI provides a practical and cost-effective technique for improving the accuracy of chemical weather numerical forecasts.
Thomas Richter, Véronique Dansereau, Christian Lessig, and Piotr Minakowski
Geosci. Model Dev., 16, 3907–3926, https://doi.org/10.5194/gmd-16-3907-2023, https://doi.org/10.5194/gmd-16-3907-2023, 2023
Short summary
Short summary
Sea ice covers not only the pole regions but affects the weather and climate globally. For example, its white surface reflects more sunlight than land. The oceans around the poles are therefore kept cool, which affects the circulation in the oceans worldwide. Simulating the behavior and changes in sea ice on a computer is, however, very difficult. We propose a new computer simulation that better models how cracks in the ice change over time and show this by comparing to other simulations.
Emma J. MacKie, Michael Field, Lijing Wang, Zhen Yin, Nathan Schoedl, Matthew Hibbs, and Allan Zhang
Geosci. Model Dev., 16, 3765–3783, https://doi.org/10.5194/gmd-16-3765-2023, https://doi.org/10.5194/gmd-16-3765-2023, 2023
Short summary
Short summary
Earth scientists often have to fill in spatial gaps in measurements. This gap-filling or interpolation can be accomplished with geostatistical methods, where the statistical relationships between measurements are used to inform how these gaps should be filled. Despite the broad utility of these methods, there are few freely available geostatistical software applications. We present GStatSim, a Python package for performing different geostatistical interpolation methods.
Ian Madden, Simone Marras, and Jenny Suckale
Geosci. Model Dev., 16, 3479–3500, https://doi.org/10.5194/gmd-16-3479-2023, https://doi.org/10.5194/gmd-16-3479-2023, 2023
Short summary
Short summary
To aid risk managers who may wish to rapidly assess tsunami risk but may lack high-performance computing infrastructure, we provide an accessible software package able to rapidly model tsunami inundation over real topography by leveraging Google's Tensor Processing Unit, a high-performance hardware. Minimally trained users can take advantage of the rapid modeling abilities provided by this package via a web browser thanks to the ease of use of Google Cloud Platform.
Youtong Rong, Paul Bates, and Jeffrey Neal
Geosci. Model Dev., 16, 3291–3311, https://doi.org/10.5194/gmd-16-3291-2023, https://doi.org/10.5194/gmd-16-3291-2023, 2023
Short summary
Short summary
A novel subgrid channel (SGC) model is developed for river–floodplain modelling, allowing utilization of subgrid-scale bathymetric information while performing computations on relatively coarse grids. By including adaptive artificial diffusion, potential numerical instability, which the original SGC solver had, in low-friction regions such as urban areas is addressed. Evaluation of the new SGC model through structured tests confirmed that the accuracy and stability have improved.
Xiaqiong Zhou and Hann-Ming Henry Juang
Geosci. Model Dev., 16, 3263–3274, https://doi.org/10.5194/gmd-16-3263-2023, https://doi.org/10.5194/gmd-16-3263-2023, 2023
Short summary
Short summary
The National Centers for Environmental Prediction Global Forecast System version 16 experienced model instability failures in real-time runs resolved by increasing the minimum thickness depth parameter. Further investigation revealed that the issue was caused by the advection of geopotential heights at the model's layer interfaces. By replacing high-order boundary conditions with zero-gradient boundary conditions for interface-wind reconstruction, the instability was effectively addressed.
Grant T. Euen, Shangxin Liu, Rene Gassmöller, Timo Heister, and Scott D. King
Geosci. Model Dev., 16, 3221–3239, https://doi.org/10.5194/gmd-16-3221-2023, https://doi.org/10.5194/gmd-16-3221-2023, 2023
Short summary
Short summary
Due to the increasing availability of high-performance computing over the past few decades, numerical models have become an important tool for research. Here we test two geodynamic codes that produce such models: ASPECT, a newer code, and CitcomS, an older one. We show that they produce solutions that are extremely close. As methods and codes become more complex over time, showing reproducibility allows us to seamlessly link previously known information to modern methodologies.
Mohammad Kazem Sharifian, Georges Kesserwani, Alovya Ahmed Chowdhury, Jeffrey Neal, and Paul Bates
Geosci. Model Dev., 16, 2391–2413, https://doi.org/10.5194/gmd-16-2391-2023, https://doi.org/10.5194/gmd-16-2391-2023, 2023
Short summary
Short summary
This paper describes a new release of the LISFLOOD-FP model for fast and efficient flood simulations. It features a new non-uniform grid generator that uses multiwavelet analyses to sensibly coarsens the resolutions where the local topographic variations are smooth. Moreover, the model is parallelised on the graphical processing units (GPUs) to further boost computational efficiency. The performance of the model is assessed for five real-world case studies, noting its potential applications.
Matt J. Fischer
EGUsphere, https://doi.org/10.5194/egusphere-2023-643, https://doi.org/10.5194/egusphere-2023-643, 2023
Short summary
Short summary
In paleoclimate research, proxy system models or PSMs model chemical or biological systems which receive environmental inputs, and output e.g. geochemical signals. The environmental inputs are rarely noiseless, which causes problems when calibrating multi-input PSMs. Here a PSM is developed which includes generalized noise in both model inputs and outputs, and prior information. A quasi-Bayesian method enhances the stability of the solution of the Measurement Error Proxy System Model.
Bruno K. Zürcher
Geosci. Model Dev., 16, 1697–1711, https://doi.org/10.5194/gmd-16-1697-2023, https://doi.org/10.5194/gmd-16-1697-2023, 2023
Short summary
Short summary
We present a novel algorithm to efficiently compute Barnes interpolation, which is a method for transforming data values recorded at irregularly spaced points into a corresponding regular grid. In contrast to naive implementations with an algorithmic complexity that depends on the product of the number of sample points and the number of grid points, our approach reduces this dependency to their sum.
David H. Marsico and Paul A. Ullrich
Geosci. Model Dev., 16, 1537–1551, https://doi.org/10.5194/gmd-16-1537-2023, https://doi.org/10.5194/gmd-16-1537-2023, 2023
Short summary
Short summary
Climate models involve several different components, such as the atmosphere, ocean, and land models. Information needs to be exchanged, or remapped, between these models, and devising algorithms for performing this exchange is important for ensuring the accuracy of climate simulations. In this paper, we examine the efficacy of several traditional and novel approaches to remapping on the sphere and demonstrate where our approaches offer improvement.
Moritz Liebl, Jörg Robl, Stefan Hergarten, David Lundbek Egholm, and Kurt Stüwe
Geosci. Model Dev., 16, 1315–1343, https://doi.org/10.5194/gmd-16-1315-2023, https://doi.org/10.5194/gmd-16-1315-2023, 2023
Short summary
Short summary
In this study, we benchmark a topography-based model for glacier erosion (OpenLEM) with a well-established process-based model (iSOSIA). Our experiments show that large-scale erosion patterns and particularly the transformation of valley length geometry from fluvial to glacial conditions are very similar in both models. This finding enables the application of OpenLEM to study the influence of climate and tectonics on glaciated mountains with reasonable computational effort on standard PCs.
James Kent, Thomas Melvin, and Golo Albert Wimmer
Geosci. Model Dev., 16, 1265–1276, https://doi.org/10.5194/gmd-16-1265-2023, https://doi.org/10.5194/gmd-16-1265-2023, 2023
Short summary
Short summary
This paper introduces the Met Office's new shallow water model. The shallow water model is a building block towards the Met Office's new atmospheric dynamical core. The shallow water model is tested on a number of standard spherical shallow water test cases, including flow over mountains and unstable jets. Results show that the model produces similar results to other shallow water models in the literature.
Anthony Gruber, Max Gunzburger, Lili Ju, Rihui Lan, and Zhu Wang
Geosci. Model Dev., 16, 1213–1229, https://doi.org/10.5194/gmd-16-1213-2023, https://doi.org/10.5194/gmd-16-1213-2023, 2023
Short summary
Short summary
This work applies a novel technical tool, multifidelity Monte Carlo (MFMC) estimation, to three climate-related benchmark experiments involving oceanic, atmospheric, and glacial modeling. By considering useful quantities such as maximum sea height and total (kinetic) energy, we show that MFMC leads to predictions which are more accurate and less costly than those obtained by standard methods. This suggests MFMC as a potential drop-in replacement for estimation in realistic climate models.
Piyoosh Jaysaval, Glenn E. Hammond, and Timothy C. Johnson
Geosci. Model Dev., 16, 961–976, https://doi.org/10.5194/gmd-16-961-2023, https://doi.org/10.5194/gmd-16-961-2023, 2023
Short summary
Short summary
We present a robust and highly scalable implementation of numerical forward modeling and inversion algorithms for geophysical electrical resistivity tomography data. The implementation is publicly available and developed within the framework of PFLOTRAN (http://www.pflotran.org), an open-source, state-of-the-art massively parallel subsurface flow and transport simulation code. The paper details all the theoretical and implementation aspects of the new capabilities along with test examples.
Lucas Schauer, Michael J. Schmidt, Nicholas B. Engdahl, Stephen D. Pankavich, David A. Benson, and Diogo Bolster
Geosci. Model Dev., 16, 833–849, https://doi.org/10.5194/gmd-16-833-2023, https://doi.org/10.5194/gmd-16-833-2023, 2023
Short summary
Short summary
We develop a multi-dimensional, parallelized domain decomposition strategy for mass-transfer particle tracking methods in two and three dimensions, investigate different procedures for decomposing the domain, and prescribe an optimal tiling based on physical problem parameters and the number of available CPU cores. For an optimally subdivided diffusion problem, the parallelized algorithm achieves nearly perfect linear speedup in comparison with the serial run-up to thousands of cores.
John Mern and Jef Caers
Geosci. Model Dev., 16, 289–313, https://doi.org/10.5194/gmd-16-289-2023, https://doi.org/10.5194/gmd-16-289-2023, 2023
Short summary
Short summary
In this work, we formulate the sequential geoscientific data acquisition problem as a problem that is similar to playing chess against nature, except the pieces are not fully observed. Solutions to these problems are given in AI and rarely used in geoscientific data planning. We illustrate our approach to a simple 2D problem of mineral exploration.
Ziqi Gao, Yifeng Wang, Petros Vasilakos, Cesunica E. Ivey, Khanh Do, and Armistead G. Russell
Geosci. Model Dev., 15, 9015–9029, https://doi.org/10.5194/gmd-15-9015-2022, https://doi.org/10.5194/gmd-15-9015-2022, 2022
Short summary
Short summary
While the national ambient air quality standard of ozone is based on the 3-year average of the fourth highest 8 h maximum (MDA8) ozone concentrations, these predicted extreme values using numerical methods are always biased low. We built four computational models (GAM, MARS, random forest and SVR) to predict the fourth highest MDA8 ozone in Southern California using precursor emissions, meteorology and climatological patterns. All models presented acceptable performance, with GAM being the best.
Zhihao Wang, Jason Goetz, and Alexander Brenning
Geosci. Model Dev., 15, 8765–8784, https://doi.org/10.5194/gmd-15-8765-2022, https://doi.org/10.5194/gmd-15-8765-2022, 2022
Short summary
Short summary
A lack of inventory data can be a limiting factor in developing landslide predictive models, which are crucial for supporting hazard policy and decision-making. We show how case-based reasoning and domain adaptation (transfer-learning techniques) can effectively retrieve similar landslide modeling situations for prediction in new data-scarce areas. Using cases in Italy, Austria, and Ecuador, our findings support the application of transfer learning for areas that require rapid model development.
Cited articles
Anderson, J. L. and Anderson, S. L.: A Monte Carlo Implementation of the
Nonlinear Filtering Problem to Produce Ensemble Assimilations and Forecasts,
Mon. Weather Rev., 127, 2741–2758,
https://doi.org/10.1175/1520-0493(1999)127<2741:AMCIOT>2.0.CO;2, 1999. a, b
Bacour, C., Peylin, P., MacBean, N., Rayner, P. J., Delage, F., Chevallier, F.,
Weiss, M., Demarty, J., Santaren, D., Baret, F., Berveiller, D., Dufrêne,
E., and Prunet, P.: Joint assimilation of eddy-covariance flux measurements
and FAPAR products over temperate forests within a process-oriented biosphere
model, J. Geophys. Res.-Biogeosci., 120, 1839–1857,
https://doi.org/10.1002/2015JG002966, 2015. a
Bannister, R. N.: A review of operational methods of variational and
ensemble-variational data assimilation, Q. J. Roy.
Meteorol. Soc., 143, 607–633, https://doi.org/10.1002/qj.2982, 2016. a, b
Best, M. J., Pryor, M., Clark, D. B., Rooney, G. G., Essery, R. L. H., Ménard, C. B., Edwards, J. M., Hendry, M. A., Porson, A., Gedney, N., Mercado, L. M., Sitch, S., Blyth, E., Boucher, O., Cox, P. M., Grimmond, C. S. B., and Harding, R. J.: The Joint UK Land Environment Simulator (JULES), model description – Part 1: Energy and water fluxes, Geosci. Model Dev., 4, 677–699, https://doi.org/10.5194/gmd-4-677-2011, 2011. a, b
Bloom, A. A. and Williams, M.: Constraining ecosystem carbon dynamics in a data-limited world: integrating ecological “common sense” in a model-data fusion framework, Biogeosciences, 12, 1299–1315, https://doi.org/10.5194/bg-12-1299-2015, 2015. a
Bloom, A. A., Exbrayat, J.-F., van der Velde, I. R., Feng, L., and Williams,
M.: The decadal state of the terrestrial carbon cycle: Global retrievals of
terrestrial carbon allocation, pools, and residence times, P.
Natl. Acad. Sci., 113, 1285–1290, 2016. a
Bocquet, M.: Localization and the iterative ensemble Kalman smoother, Q.
J. Roy. Meteorol. Soc., 142, 1075–1089,
https://doi.org/10.1002/qj.2711, 2015. a, b
Bocquet, M. and Sakov, P.: Joint state and parameter estimation with an iterative ensemble Kalman smoother, Nonlin. Processes Geophys., 20, 803–818, https://doi.org/10.5194/npg-20-803-2013, 2013. a
Bocquet, M. and Sakov, P.: An iterative ensemble Kalman smoother, Q.
J. Roy. Meteorol. Soc., 140, 1521–1535,
https://doi.org/10.1002/qj.2236, 2014. a
Braswell, B. H., Sacks, W. J., Linder, E., and Schimel, D. S.: Estimating
diurnal to annual ecosystem parameters by synthesis of a carbon flux model
with eddy covariance net ecosystem exchange observations, Global Change
Biol., 11, 335–355, 2005. a
Clark, D. B., Mercado, L. M., Sitch, S., Jones, C. D., Gedney, N., Best, M. J., Pryor, M., Rooney, G. G., Essery, R. L. H., Blyth, E., Boucher, O., Harding, R. J., Huntingford, C., and Cox, P. M.: The Joint UK Land Environment Simulator (JULES), model description – Part 2: Carbon fluxes and vegetation dynamics, Geosci. Model Dev., 4, 701–722, https://doi.org/10.5194/gmd-4-701-2011, 2011. a, b
De Lannoy, G. J. M. and Reichle, R. H.: Assimilation of SMOS brightness temperatures or soil moisture retrievals into a land surface model, Hydrol. Earth Syst. Sci., 20, 4895–4911, https://doi.org/10.5194/hess-20-4895-2016, 2016. a
Desroziers, G., Camino, J.-T., and Berre, L.: 4DEnVar: link with 4D state
formulation of variational assimilation and different possible
implementations, Q. J. Roy. Meteorol. Soc., 140,
2097–2110, https://doi.org/10.1002/qj.2325, 2014. a
Dietze, M. C.: Prediction in ecology: a first-principles framework, Ecol.
Appl., 27, 2048–2060, https://doi.org/10.1002/eap.1589, 2017. a
Evensen, G.: The Ensemble Kalman Filter: theoretical formulation and practical
implementation, Ocean Dynam., 53, 343–367,
https://doi.org/10.1007/s10236-003-0036-9, 2003. a
Fer, I., Kelly, R., Moorcroft, P. R., Richardson, A. D., Cowdery, E. M., and Dietze, M. C.: Linking big models to big data: efficient ecosystem model calibration through Bayesian model emulation, Biogeosciences, 15, 5801–5830, https://doi.org/10.5194/bg-15-5801-2018, 2018. a
Fluxdata: The Data Portal serving the FLUXNET community, Lawrence Berkeley National Laboratory, available at: http://fluxnet.fluxdata.org/ (last access: 6 January 2020), 2017. a
Ghent, D., Kaduk, J., Remedios, J., Ardö, J., and Balzter, H.: Assimilation
of land surface temperature into the land surface model JULES with an
ensemble Kalman filter, J. Geophys. Res.-Atmos., 115, D19112,
https://doi.org/10.1029/2010JD014392, 2010. a
Gómez-Dans, J. L., Lewis, P. E., and Disney, M.: Efficient Emulation of
Radiative Transfer Codes Using Gaussian Processes and Application to Land
Surface Parameter Inferences, Remote Sens., 8, https://doi.org/10.3390/rs8020119, 2016. a
Guindin-Garcia, N., Gitelson, A. A., Arkebauer, T. J., Shanahan, J., and Weiss, A.: An evaluation of MODIS 8- and 16-day composite products for monitoring maize green leaf area index, Agr. Forest Meteorol., 161, 15–25, https://doi.org/10.1016/j.agrformet.2012.03.012, 2012. a, b
Hamill, T. M., Whitaker, J. S., and Snyder, C.: Distance-Dependent Filtering of Background Error Covariance Estimates in an Ensemble Kalman Filter, Mon. Weather Rev., 129, 2776–2790,
https://doi.org/10.1175/1520-0493(2001)129<2776:DDFOBE>2.0.CO;2, 2001. a
Howes, K. E., Fowler, A. M., and Lawless, A. S.: Accounting for model error in strong-constraint 4D-Var data assimilation, Q. J. Roy. Meteorol. Soc., 143, 1227–1240, https://doi.org/10.1002/qj.2996, 2017. a
Keenan, T. F., Davidson, E., Moffat, A. M., Munger, W., and Richardson, A. D.: Using model-data fusion to interpret past trends, and quantify uncertainties in future projections, of terrestrial ecosystem carbon cycling, Global Change Biol., 18, 2555–2569, https://doi.org/10.1111/j.1365-2486.2012.02684.x, 2012. a
Kolassa, J., Reichle, R., and Draper, C.: Merging active and passive microwave
observations in soil moisture data assimilation, Remote Sens.
Environ., 191, 117–130, 2017. a
LeBauer, D., Wang, D., Richter, K., Davidson, C., and Dietze, M.: Facilitating
feedbacks between field measurements and ecosystem models, Ecol.
Mono., 83, 133–154, https://doi.org/10.1890/12-0137.1, 2013. a
Li, Y., Navon, I. M., Yang, W., Zou, X., Bates, J. R., Moorthi, S., and
Higgins, R. W.: Four-Dimensional Variational Data Assimilation Experiments
with a Multilevel Semi-Lagrangian Semi-Implicit General Circulation Model,
Mon. Weather Rev., 122, 966–983,
https://doi.org/10.1175/1520-0493(1994)122<0966:FDVDAE>2.0.CO;2, 1994. a
Liu, C., Xiao, Q., and Wang, B.: An Ensemble-Based Four-Dimensional
Variational Data Assimilation Scheme. Part I: Technical Formulation and
Preliminary Test, Mon. Weather Rev., 136, 3363–3373,
https://doi.org/10.1175/2008MWR2312.1, 2008. a, b, c
Luo, Y., Keenan, T. F., and Smith, M.: Predictability of the terrestrial carbon cycle, Global Change Biol., 21, 1737–1751, https://doi.org/10.1111/gcb.12766, 2015. a
Metropolis, N., Rosenbluth, A. W., Rosenbluth, M. N., Teller, A. H., and
Teller, E.: Equation of state calculations by fast computing machines, The
J. Chem. Phys., 21, 1087–1092, 1953. a
Navon, I. M., Zou, X., Derber, J., and Sela, J.: Variational Data Assimilation
with an Adiabatic Version of the NMC Spectral Model, Mon. Weather Rev.,
120, 1433–1446, https://doi.org/10.1175/1520-0493(1992)120<1433:VDAWAA>2.0.CO;2,
1992. a
Nguy-Robertson, A., Peng, Y., Arkebauer, T., Scoby, D., Schepers, J., and
Gitelson, A.: Using a Simple Leaf Color Chart to Estimate Leaf and Canopy
Chlorophyll a Content in Maize (Zea mays), Commun. Soil Sci.
Plant Anal., 46, 2734–2745, https://doi.org/10.1080/00103624.2015.1093639, 2015. a
Oliver, H. J., Shin, M., Fitzpatrick, B., Clark, A., Sanders, O., Kinoshita,
B. P., Bartholomew, S. L., Valters, D., challurip, Trzeciak, T.,
Matthews, D., Wales, S., Sutherland, D., wxtim, lhuggett, Williams, J., Hatcher, R., Osprey, A., Reinecke, A., Dix, M., Pulo, K., and Andrew: cylc/cylc-flow: cylc-7.8.3, https://doi.org/10.5281/zenodo.3243691, 2019. a
Osborne, T., Gornall, J., Hooker, J., Williams, K., Wiltshire, A., Betts, R., and Wheeler, T.: JULES-crop: a parametrisation of crops in the Joint UK Land Environment Simulator, Geosci. Model Dev., 8, 1139–1155, https://doi.org/10.5194/gmd-8-1139-2015, 2015. a
Pinnington, E.: pyearthsci/lavendar: First release of LaVEnDAR software,
https://doi.org/10.5281/zenodo.2654853, 2019. a, b
Pinnington, E., Quaife, T., and Black, E.: Impact of remotely sensed soil moisture and precipitation on soil moisture prediction in a data assimilation system with the JULES land surface model, Hydrol. Earth Syst. Sci., 22, 2575–2588, https://doi.org/10.5194/hess-22-2575-2018, 2018. a, b, c, d
Pinnington, E. M., Casella, E., Dance, S. L., Lawless, A. S., Morison, J. I.,
Nichols, N. K., Wilkinson, M., and Quaife, T. L.: Investigating the role of
prior and observation error correlations in improving a model forecast of
forest carbon balance using Four-dimensional Variational data assimilation, Agr. Forest Meteorol., 228–229, 299–314,
https://doi.org/10.1016/j.agrformet.2016.07.006, 2016. a, b, c
Pinnington, E. M., Casella, E., Dance, S. L., Lawless, A. S., Morison, J.
I. L., Nichols, N. K., Wilkinson, M., and Quaife, T. L.: Understanding the
effect of disturbance from selective felling on the carbon dynamics of a
managed woodland by combining observations with model predictions, J. Geophys. Res.-Biogeosci., 122, 886–902,
https://doi.org/10.1002/2017JG003760, 2017. a
Post, H., Hendricks Franssen, H.-J., Han, X., Baatz, R., Montzka, C., Schmidt, M., and Vereecken, H.: Evaluation and uncertainty analysis of regional-scale CLM4.5 net carbon flux estimates, Biogeosciences, 15, 187–208, https://doi.org/10.5194/bg-15-187-2018, 2018. a
Quaife, T., Lewis, P., De Kauwe, M., Williams, M., Law, B. E., Disney, M.,
and Bowyer, P.: Assimilating canopy reflectance data into an ecosystem model with an Ensemble Kalman Filter, Remote Sens. Environ., 112,
1347–1364, https://doi.org/10.1016/j.rse.2007.05.020, 2008. a
Raj, R., Hamm, N. A. S., Tol, C. V. D., and Stein, A.: Uncertainty analysis of gross primary production partitioned from net ecosystem exchange measurements, Biogeosciences, 13, 1409–1422, https://doi.org/10.5194/bg-13-1409-2016, 2016. a
Raoult, N. M., Jupp, T. E., Cox, P. M., and Luke, C. M.: Land-surface parameter optimisation using data assimilation techniques: the adJULES system V1.0, Geosci. Model Dev., 9, 2833–2852, https://doi.org/10.5194/gmd-9-2833-2016, 2016. a, b, c, d
Rayner, P., Scholze, M., Knorr, W., Kaminski, T., Giering, R., and Widmann, H.: Two decades of terrestrial carbon fluxes from a carbon cycle data
assimilation system (CCDAS), Global Biogeochem. Cy., 19, GB2026, https://doi.org/10.1029/2004GB002254, 2005. a
Sawada, Y. and Koike, T.: Simultaneous estimation of both hydrological and
ecological parameters in an ecohydrological model by assimilating microwave
signal, J. Geophys. Res.-Atmos., 119, 8839–8857,
https://doi.org/10.1002/2014JD021536, 2014. a
Schaefer, K., Schwalm, C. R., Williams, C., Arain, M. A., Barr, A., Chen,
J. M., Davis, K. J., Dimitrov, D., Hilton, T. W., Hollinger, D. Y.,
Humphreys, E., Poulter, B., Raczka, B. M., Richardson, A. D., Sahoo, A.,
Thornton, P., Vargas, R., Verbeeck, H., Anderson, R., Baker, I., Black,
T. A., Bolstad, P., Chen, J., Curtis, P. S., Desai, A. R., Dietze, M.,
Dragoni, D., Gough, C., Grant, R. F., Gu, L., Jain, A., Kucharik, C., Law,
B., Liu, S., Lokipitiya, E., Margolis, H. A., Matamala, R., McCaughey, J. H., Monson, R., Munger, J. W., Oechel, W., Peng, C., Price, D. T., Ricciuto, D., Riley, W. J., Roulet, N., Tian, H., Tonitto, C., Torn, M., Weng, E., and Zhou, X.: A model-data comparison of gross primary productivity: Results from the North American Carbon Program site synthesis, J. Geophys.
Res.-Biogeosci., 117, G03010, https://doi.org/10.1029/2012JG001960, 2012. a
Suyker, A.: AmeriFlux US–Ne1 Mead – irrigated continuous maize site,
https://doi.org/10.17190/AMF/1246084, 2016. a, b
Suyker, A. E. and Verma, S. B.: Gross primary production and ecosystem
respiration of irrigated and rainfed maize-soybean cropping systems over 8
years, Agr. Forest Meteorol., 165, 12–24,
https://doi.org/10.1016/j.agrformet.2012.05.021, 2012.
a
Tremolet, Y.: Accounting for an imperfect model in 4D-Var, Q. J. Roy. Meteorol. Soc., 132, 2483–2504,
https://doi.org/10.1256/qj.05.224, 2006. a
Verma, S. B., Dobermann, A., Cassman, K. G., Walters, D. T., Knops, J. M.,
Arkebauer, T. J., Suyker, A. E., Burba, G. G., Amos, B., Yang, H., Ginting,
D., Hubbard, K. G., Gitelson, A. A., and Walter-Shea, E. A.: Annual carbon
dioxide exchange in irrigated and rainfed maize-based agroecosystems,
Agr. Forest Meteorol., 131, 77–96,
https://doi.org/10.1016/j.agrformet.2005.05.003, 2005. a
Viña, A., Gitelson, A. A., Nguy-Robertson, A. L., and Peng, Y.: Comparison of different vegetation indices for the remote assessment of green leaf area index of crops, Remote Sens. Environ., 115, 3468–3478, https://doi.org/10.1016/j.rse.2011.08.010, 2011. a, b
Williams, K., Gornall, J., Harper, A., Wiltshire, A., Hemming, D., Quaife, T., Arkebauer, T., and Scoby, D.: Evaluation of JULES-crop performance against site observations of irrigated maize from Mead, Nebraska, Geosci. Model Dev., 10, 1291–1320, https://doi.org/10.5194/gmd-10-1291-2017, 2017. a, b, c, d, e, f, g, h, i
Williams, M., Schwarz, P. A., Law, B. E., Irvine, J., and Kurpius, M. R.: An
improved analysis of forest carbon dynamics using data assimilation, Global
Change Biol., 11, 89–105, 2005. a
Yang, H., Grassini, P., Cassman, K. G., Aiken, R. M., and Coyne, P. I.:
Improvements to the Hybrid-Maize model for simulating maize yields in harsh
rainfed environments, Field Crops Res., 204, 180–190,
https://doi.org/10.1016/j.fcr.2017.01.019, 2017. a
Yang, K., Zhu, L., Chen, Y., Zhao, L., Qin, J., Lu, H., Tang, W., Han, M.,
Ding, B., and Fang, N.: Land surface model calibration through microwave data assimilation for improving soil moisture simulations, J. Hydrol.,
533, 266–276, https://doi.org/10.1016/j.jhydrol.2015.12.018, 2016. a
Ziehn, T., Scholze, M., and Knorr, W.: On the capability of Monte Carlo and
adjoint inversion techniques to derive posterior parameter uncertainties in
terrestrial ecosystem models, Global Biogeochem. Cy., 26, GB3025,
https://doi.org/10.1029/2011GB004185, gB3025, 2012. a
Zobitz, J., Desai, A., Moore, D., and Chadwick, M.: A primer for data
assimilation with ecological models using Markov Chain Monte Carlo (MCMC), Oecologia, 167, 599–611, 2011. a
Zobitz, J. M., Moore, D. J. P., Quaife, T., Braswell, B. H., Bergeson, A.,
Anthony, J. A., and Monson, R. K.: Joint data assimilation of satellite
reflectance and net ecosystem exchange data constrains ecosystem carbon
fluxes at a high-elevation subalpine forest, Agr. Forest
Meteorol., 195–196, 73–88, https://doi.org/10.1016/j.agrformet.2014.04.011, 2014. a
Short summary
We present LAVENDAR, a mathematical method for combining observations with models of the terrestrial environment. Here we use it to improve estimates of crop growth in the UK Met Office land surface model. However, the method is model agnostic, requires no modification to the underlying code and can be applied to any part of the model. In the example application we improve estimates of maize yield by 74 % by assimilating observations of leaf area, crop height and photosynthesis.
We present LAVENDAR, a mathematical method for combining observations with models of the...
