Articles | Volume 13, issue 9
https://doi.org/10.5194/gmd-13-4459-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-13-4459-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
| Highlight paper
| 
24 Sep 2020
Development and technical paper | Highlight paper |
| 24 Sep 2020
| 24 Sep 2020
An improved mechanistic model for ammonia volatilization in Earth system models: Flow of Agricultural Nitrogen version 2 (FANv2)
Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, USA
Finnish Meteorological Institute, Helsinki, Finland
Peter Hess
Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, USA
Jeff Melkonian
Section of Soil and Crop Sciences, Cornell University, Ithaca, NY, USA
William R. Wieder
Climate and Global Dynamics Laboratory, National Center for Atmospheric Research, Boulder, CO 80307, USA
Institute of Arctic and Alpine Research, University of Colorado, Boulder, CO 80309, USA
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Natalie M. Mahowald, Longlei Li, Julius Vira, Marje Prank, Douglas S. Hamilton, Hitoshi Matsui, Ron L. Miller, Louis Lu, Ezgi Akyuz, Daphne Meidan, Peter G. Hess, Heikki Lihavainen, Christine Wiedinmyer, Jenny Hand, Maria Grazia Alaimo, Célia Alves, Andres Alastuey, Paulo Artaxo, Africa Barreto, Francisco Barraza, Silvia Becagli, Giulia Calzolai, Shankararaman Chellam, Ying Chen, Patrick Chuang, David D. Cohen, Cristina Colombi, Evangelia Diapouli, Gaetano Dongarra, Konstantinos Eleftheriadis, Johann Engelbrecht, Corinne Galy-Lacaux, Cassandra Gaston, Dario Gomez, Yenny González Ramos, Roy M. Harrison, Chris Heyes, Barak Herut, Philip Hopke, Christoph Hüglin, Maria Kanakidou, Zsofia Kertesz, Zbigniew Klimont, Katriina Kyllönen, Fabrice Lambert, Xiaohong Liu, Remi Losno, Franco Lucarelli, Willy Maenhaut, Beatrice Marticorena, Randall V. Martin, Nikolaos Mihalopoulos, Yasser Morera-Gomez, Adina Paytan, Joseph Prospero, Sergio Rodríguez, Patricia Smichowski, Daniela Varrica, Brenna Walsh, Crystal Weagle, and Xi Zhao
EGUsphere, https://doi.org/10.5194/egusphere-2024-1617, https://doi.org/10.5194/egusphere-2024-1617, 2024
This preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).
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Aerosol particles are an important part of the Earth system, but their concentrations are spatially and temporally heterogeneous, as well as variable in size and composition. Here we present a new compilation of PM2.5 and PM10 aerosol observations, focusing on the spatial variability across different observational stations, including composition, and demonstrate a method for comparing the datasets to model output.
Natalie M. Mahowald, Longlei Li, Julius Vira, Marje Prank, Douglas S. Hamilton, Hitoshi Matsui, Ron L. Miller, Louis Lu, Ezgi Akyuz, Daphne Meidan, Peter Hess, Heikki Lihavainen, Christine Wiedinmyer, Jenny Hand, Maria Grazia Alaimo, Célia Alves, Andres Alastuey, Paulo Artaxo, Africa Barreto, Francisco Barraza, Silvia Becagli, Giulia Calzolai, Shankarararman Chellam, Ying Chen, Patrick Chuang, David D. Cohen, Cristina Colombi, Evangelia Diapouli, Gaetano Dongarra, Konstantinos Eleftheriadis, Corinne Galy-Lacaux, Cassandra Gaston, Dario Gomez, Yenny González Ramos, Hannele Hakola, Roy M. Harrison, Chris Heyes, Barak Herut, Philip Hopke, Christoph Hüglin, Maria Kanakidou, Zsofia Kertesz, Zbiginiw Klimont, Katriina Kyllönen, Fabrice Lambert, Xiaohong Liu, Remi Losno, Franco Lucarelli, Willy Maenhaut, Beatrice Marticorena, Randall V. Martin, Nikolaos Mihalopoulos, Yasser Morera-Gomez, Adina Paytan, Joseph Prospero, Sergio Rodríguez, Patricia Smichowski, Daniela Varrica, Brenna Walsh, Crystal Weagle, and Xi Zhao
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-1, https://doi.org/10.5194/essd-2024-1, 2024
Preprint withdrawn
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Aerosol particles can interact with incoming solar radiation and outgoing long wave radiation, change cloud properties, affect photochemistry, impact surface air quality, and when deposited impact surface albedo of snow and ice, and modulate carbon dioxide uptake by the land and ocean. Here we present a new compilation of aerosol observations including composition, a methodology for comparing the datasets to model output, and show the implications of these results using one model.
Toni Viskari, Janne Pusa, Istem Fer, Anna Repo, Julius Vira, and Jari Liski
Geosci. Model Dev., 15, 1735–1752, https://doi.org/10.5194/gmd-15-1735-2022, https://doi.org/10.5194/gmd-15-1735-2022, 2022
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We wanted to examine how the chosen measurement data and calibration process affect soil organic carbon model calibration. In our results we found that there is a benefit in using data from multiple litter-bag decomposition experiments simultaneously, even with the required assumptions. Additionally, due to the amount of noise and uncertainties in the system, more advanced calibration methods should be used to parameterize the models.
Olli Nevalainen, Olli Niemitalo, Istem Fer, Antti Juntunen, Tuomas Mattila, Olli Koskela, Joni Kukkamäki, Layla Höckerstedt, Laura Mäkelä, Pieta Jarva, Laura Heimsch, Henriikka Vekuri, Liisa Kulmala, Åsa Stam, Otto Kuusela, Stephanie Gerin, Toni Viskari, Julius Vira, Jari Hyväluoma, Juha-Pekka Tuovinen, Annalea Lohila, Tuomas Laurila, Jussi Heinonsalo, Tuula Aalto, Iivari Kunttu, and Jari Liski
Geosci. Instrum. Method. Data Syst., 11, 93–109, https://doi.org/10.5194/gi-11-93-2022, https://doi.org/10.5194/gi-11-93-2022, 2022
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Better monitoring of soil carbon sequestration is needed to understand the best carbon farming practices in different soils and climate conditions. We, the Field Observatory Network (FiON), have therefore established a methodology for monitoring and forecasting agricultural carbon sequestration by combining offline and near-real-time field measurements, weather data, satellite imagery, and modeling. To disseminate our work, we built a website called the Field Observatory (fieldobservatory.org).
Julius Vira, Peter Hess, Money Ossohou, and Corinne Galy-Lacaux
Atmos. Chem. Phys., 22, 1883–1904, https://doi.org/10.5194/acp-22-1883-2022, https://doi.org/10.5194/acp-22-1883-2022, 2022
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Ammonia is one of the main components of nitrogen deposition. Here we use a new model to assess the ammonia emissions from agriculture, the largest anthropogenic source of ammonia. The model results are consistent with earlier estimates over industrialized regions in agreement with observations. However, the model predicts much higher emissions over sub-Saharan Africa compared to earlier estimates. Available observations from surface stations and satellites support these higher emissions.
Rostislav Kouznetsov, Mikhail Sofiev, Julius Vira, and Gabriele Stiller
Atmos. Chem. Phys., 20, 5837–5859, https://doi.org/10.5194/acp-20-5837-2020, https://doi.org/10.5194/acp-20-5837-2020, 2020
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Estimates of the age of stratospheric air (AoA), its distribution, and trends, obtained by different experimental methods, differ among each other. AoA derived form MIPAS satellite observations, the richest observational dataset on sulfur hexafluoride (SF6) in the stratosphere, are a clear outlier. With multi-decade simulations of AoA and SF6 in the stratosphere, we show that the origin of the discrepancy is in a methodology of deriving AoA from observations rather than in observational data.
Susanna Salminen-Paatero, Julius Vira, and Jussi Paatero
Atmos. Chem. Phys., 20, 5759–5769, https://doi.org/10.5194/acp-20-5759-2020, https://doi.org/10.5194/acp-20-5759-2020, 2020
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We measured concentrations and isotope ratios of plutonium in air filters collected in Finnish Lapland in 1965–2011. Radioactive-contamination sources were global nuclear-testing fallout and the Fukushima and SNAP-9A accidents. Both real and hypothetical nuclear accidents were studied with atmospheric-dispersion modeling. The radioactive-contamination effect on Finnish Lapland would be minor from an intended nuclear power plant and negligible from a floating nuclear reactor in the Barents Sea.
Anne-Marlene Blechschmidt, Joaquim Arteta, Adriana Coman, Lyana Curier, Henk Eskes, Gilles Foret, Clio Gielen, Francois Hendrick, Virginie Marécal, Frédérik Meleux, Jonathan Parmentier, Enno Peters, Gaia Pinardi, Ankie J. M. Piters, Matthieu Plu, Andreas Richter, Arjo Segers, Mikhail Sofiev, Álvaro M. Valdebenito, Michel Van Roozendael, Julius Vira, Tim Vlemmix, and John P. Burrows
Atmos. Chem. Phys., 20, 2795–2823, https://doi.org/10.5194/acp-20-2795-2020, https://doi.org/10.5194/acp-20-2795-2020, 2020
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MAX-DOAS tropospheric NO2 vertical column retrievals from a set of European measurement stations are compared to regional air quality models which contribute to the operational Copernicus Atmosphere Monitoring Service (CAMS). Correlations are on the order of 35 %–75 %; large differences occur for individual pollution plumes. The results demonstrate that future model development needs to concentrate on improving representation of diurnal cycles and associated temporal scalings.
Susan J. Cheng, Peter G. Hess, William R. Wieder, R. Quinn Thomas, Knute J. Nadelhoffer, Julius Vira, Danica L. Lombardozzi, Per Gundersen, Ivan J. Fernandez, Patrick Schleppi, Marie-Cécile Gruselle, Filip Moldan, and Christine L. Goodale
Biogeosciences, 16, 2771–2793, https://doi.org/10.5194/bg-16-2771-2019, https://doi.org/10.5194/bg-16-2771-2019, 2019
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Nitrogen deposition and fertilizer can change how much carbon is stored in plants and soils. Understanding how much added nitrogen is recovered in plants or soils is critical to estimating the size of the future land carbon sink. We compared how nitrogen additions are recovered in modeled soil and plant stocks against data from long-term nitrogen addition experiments. We found that the model simulates recovery of added nitrogen into soils through a different process than found in the field.
Mikhail Sofiev, Olga Ritenberga, Roberto Albertini, Joaquim Arteta, Jordina Belmonte, Carmi Geller Bernstein, Maira Bonini, Sevcan Celenk, Athanasios Damialis, John Douros, Hendrik Elbern, Elmar Friese, Carmen Galan, Gilles Oliver, Ivana Hrga, Rostislav Kouznetsov, Kai Krajsek, Donat Magyar, Jonathan Parmentier, Matthieu Plu, Marje Prank, Lennart Robertson, Birthe Marie Steensen, Michel Thibaudon, Arjo Segers, Barbara Stepanovich, Alvaro M. Valdebenito, Julius Vira, and Despoina Vokou
Atmos. Chem. Phys., 17, 12341–12360, https://doi.org/10.5194/acp-17-12341-2017, https://doi.org/10.5194/acp-17-12341-2017, 2017
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This work presents the features and evaluates the quality of the Copernicus Atmospheric Monitoring Service forecasts of olive pollen distribution in Europe. It is shown that the models can predict the main features of the observed pollen distribution but have more difficulties in capturing the season start and end, which appeared shifted by a few days. We also demonstrated that the combined use of model predictions with up-to-date measurements (data fusion) can strongly improve the results.
Julius Vira, Elisa Carboni, Roy G. Grainger, and Mikhail Sofiev
Geosci. Model Dev., 10, 1985–2008, https://doi.org/10.5194/gmd-10-1985-2017, https://doi.org/10.5194/gmd-10-1985-2017, 2017
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The vertical and temporal distributions of sulfur dioxide emissions during the 2010 eruption of Eyjafjallajökull were reconstructed by combining data from the IASI satellite instrument with a dispersion model. Unlike in previous studies, both column density (the total amount above a given point) and the plume height were derived from the satellite data. This resulted in more accurate simulated vertical distributions for the times when the emission was not constrained by the column densities.
M. Sofiev, J. Vira, R. Kouznetsov, M. Prank, J. Soares, and E. Genikhovich
Geosci. Model Dev., 8, 3497–3522, https://doi.org/10.5194/gmd-8-3497-2015, https://doi.org/10.5194/gmd-8-3497-2015, 2015
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The paper presents a transport mechanism of SILAM CTM based on an algorithm of M. Galperin. We describe the original scheme and its updates needed for applications to long-living species, complex atmospheric flows, etc. The scheme is connected to vertical diffusion, chemical transformation and deposition algorithms. Quality of the advection routine is evaluated with a large set of tests, which showed performance fully comparable with state-of-the-art algorithms at much lower computational costs.
V. Marécal, V.-H. Peuch, C. Andersson, S. Andersson, J. Arteta, M. Beekmann, A. Benedictow, R. Bergström, B. Bessagnet, A. Cansado, F. Chéroux, A. Colette, A. Coman, R. L. Curier, H. A. C. Denier van der Gon, A. Drouin, H. Elbern, E. Emili, R. J. Engelen, H. J. Eskes, G. Foret, E. Friese, M. Gauss, C. Giannaros, J. Guth, M. Joly, E. Jaumouillé, B. Josse, N. Kadygrov, J. W. Kaiser, K. Krajsek, J. Kuenen, U. Kumar, N. Liora, E. Lopez, L. Malherbe, I. Martinez, D. Melas, F. Meleux, L. Menut, P. Moinat, T. Morales, J. Parmentier, A. Piacentini, M. Plu, A. Poupkou, S. Queguiner, L. Robertson, L. Rouïl, M. Schaap, A. Segers, M. Sofiev, L. Tarasson, M. Thomas, R. Timmermans, Á. Valdebenito, P. van Velthoven, R. van Versendaal, J. Vira, and A. Ung
Geosci. Model Dev., 8, 2777–2813, https://doi.org/10.5194/gmd-8-2777-2015, https://doi.org/10.5194/gmd-8-2777-2015, 2015
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This paper describes the air quality forecasting system over Europe put in place in the Monitoring Atmospheric Composition and Climate projects. It provides daily and 4-day forecasts and analyses for the previous day for major gas and particulate pollutants and their main precursors. These products are based on a multi-model approach using seven state-of-the-art models developed in Europe. An evaluation of the performance of the system is discussed in the paper.
M. Sofiev, U. Berger, M. Prank, J. Vira, J. Arteta, J. Belmonte, K.-C. Bergmann, F. Chéroux, H. Elbern, E. Friese, C. Galan, R. Gehrig, D. Khvorostyanov, R. Kranenburg, U. Kumar, V. Marécal, F. Meleux, L. Menut, A.-M. Pessi, L. Robertson, O. Ritenberga, V. Rodinkova, A. Saarto, A. Segers, E. Severova, I. Sauliene, P. Siljamo, B. M. Steensen, E. Teinemaa, M. Thibaudon, and V.-H. Peuch
Atmos. Chem. Phys., 15, 8115–8130, https://doi.org/10.5194/acp-15-8115-2015, https://doi.org/10.5194/acp-15-8115-2015, 2015
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The paper presents the first ensemble modelling experiment for forecasting the atmospheric dispersion of birch pollen in Europe. The study included 7 models of MACC-ENS tested over the season of 2010 and applied for 2013 in forecasting and reanalysis modes. The results were compared with observations in 11 countries, members of European Aeroallergen Network. The models successfully reproduced the timing of the unusually late season of 2013 but had more difficulties with absolute concentration.
M. Bocquet, H. Elbern, H. Eskes, M. Hirtl, R. Žabkar, G. R. Carmichael, J. Flemming, A. Inness, M. Pagowski, J. L. Pérez Camaño, P. E. Saide, R. San Jose, M. Sofiev, J. Vira, A. Baklanov, C. Carnevale, G. Grell, and C. Seigneur
Atmos. Chem. Phys., 15, 5325–5358, https://doi.org/10.5194/acp-15-5325-2015, https://doi.org/10.5194/acp-15-5325-2015, 2015
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Data assimilation is used in atmospheric chemistry models to improve air quality forecasts, construct re-analyses of concentrations, and perform inverse modeling. Coupled chemistry meteorology models (CCMM) are atmospheric chemistry models that simulate meteorological processes and chemical transformations jointly. We review here the current status of data assimilation in atmospheric chemistry models, with a particular focus on future prospects for data assimilation in CCMM.
J. Vira and M. Sofiev
Geosci. Model Dev., 8, 191–203, https://doi.org/10.5194/gmd-8-191-2015, https://doi.org/10.5194/gmd-8-191-2015, 2015
Natalie M. Mahowald, Longlei Li, Julius Vira, Marje Prank, Douglas S. Hamilton, Hitoshi Matsui, Ron L. Miller, Louis Lu, Ezgi Akyuz, Daphne Meidan, Peter G. Hess, Heikki Lihavainen, Christine Wiedinmyer, Jenny Hand, Maria Grazia Alaimo, Célia Alves, Andres Alastuey, Paulo Artaxo, Africa Barreto, Francisco Barraza, Silvia Becagli, Giulia Calzolai, Shankararaman Chellam, Ying Chen, Patrick Chuang, David D. Cohen, Cristina Colombi, Evangelia Diapouli, Gaetano Dongarra, Konstantinos Eleftheriadis, Johann Engelbrecht, Corinne Galy-Lacaux, Cassandra Gaston, Dario Gomez, Yenny González Ramos, Roy M. Harrison, Chris Heyes, Barak Herut, Philip Hopke, Christoph Hüglin, Maria Kanakidou, Zsofia Kertesz, Zbigniew Klimont, Katriina Kyllönen, Fabrice Lambert, Xiaohong Liu, Remi Losno, Franco Lucarelli, Willy Maenhaut, Beatrice Marticorena, Randall V. Martin, Nikolaos Mihalopoulos, Yasser Morera-Gomez, Adina Paytan, Joseph Prospero, Sergio Rodríguez, Patricia Smichowski, Daniela Varrica, Brenna Walsh, Crystal Weagle, and Xi Zhao
EGUsphere, https://doi.org/10.5194/egusphere-2024-1617, https://doi.org/10.5194/egusphere-2024-1617, 2024
This preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).
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Aerosol particles are an important part of the Earth system, but their concentrations are spatially and temporally heterogeneous, as well as variable in size and composition. Here we present a new compilation of PM2.5 and PM10 aerosol observations, focusing on the spatial variability across different observational stations, including composition, and demonstrate a method for comparing the datasets to model output.
Katrine A. Gorham, Sam Abernethy, Tyler R. Jones, Peter Hess, Natalie M. Mahowald, Daphne Meidan, Matthew S. Johnson, Maarten M. J. W. van Herpen, Yangyang Xu, Alfonso Saiz-Lopez, Thomas Röckmann, Chloe A. Brashear, Erika Reinhardt, and David Mann
Atmos. Chem. Phys., 24, 5659–5670, https://doi.org/10.5194/acp-24-5659-2024, https://doi.org/10.5194/acp-24-5659-2024, 2024
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Rapid reduction in atmospheric methane is needed to slow the rate of global warming. Reducing anthropogenic methane emissions is a top priority. However, atmospheric methane is also impacted by rising natural emissions and changing sinks. Studies of possible atmospheric methane removal approaches, such as iron salt aerosols to increase the chlorine radical sink, benefit from a roadmapped approach to understand if there may be viable and socially acceptable ways to decrease future risk.
Marika M. Holland, Cecile Hannay, John Fasullo, Alexandra Jahn, Jennifer E. Kay, Michael Mills, Isla R. Simpson, William Wieder, Peter Lawrence, Erik Kluzek, and David Bailey
Geosci. Model Dev., 17, 1585–1602, https://doi.org/10.5194/gmd-17-1585-2024, https://doi.org/10.5194/gmd-17-1585-2024, 2024
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Climate evolves in response to changing forcings, as prescribed in simulations. Models and forcings are updated over time to reflect new understanding. This makes it difficult to attribute simulation differences to either model or forcing changes. Here we present new simulations which enable the separation of model structure and forcing influence between two widely used simulation sets. Results indicate a strong influence of aerosol emission uncertainty on historical climate.
Natalie M. Mahowald, Longlei Li, Julius Vira, Marje Prank, Douglas S. Hamilton, Hitoshi Matsui, Ron L. Miller, Louis Lu, Ezgi Akyuz, Daphne Meidan, Peter Hess, Heikki Lihavainen, Christine Wiedinmyer, Jenny Hand, Maria Grazia Alaimo, Célia Alves, Andres Alastuey, Paulo Artaxo, Africa Barreto, Francisco Barraza, Silvia Becagli, Giulia Calzolai, Shankarararman Chellam, Ying Chen, Patrick Chuang, David D. Cohen, Cristina Colombi, Evangelia Diapouli, Gaetano Dongarra, Konstantinos Eleftheriadis, Corinne Galy-Lacaux, Cassandra Gaston, Dario Gomez, Yenny González Ramos, Hannele Hakola, Roy M. Harrison, Chris Heyes, Barak Herut, Philip Hopke, Christoph Hüglin, Maria Kanakidou, Zsofia Kertesz, Zbiginiw Klimont, Katriina Kyllönen, Fabrice Lambert, Xiaohong Liu, Remi Losno, Franco Lucarelli, Willy Maenhaut, Beatrice Marticorena, Randall V. Martin, Nikolaos Mihalopoulos, Yasser Morera-Gomez, Adina Paytan, Joseph Prospero, Sergio Rodríguez, Patricia Smichowski, Daniela Varrica, Brenna Walsh, Crystal Weagle, and Xi Zhao
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-1, https://doi.org/10.5194/essd-2024-1, 2024
Preprint withdrawn
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Aerosol particles can interact with incoming solar radiation and outgoing long wave radiation, change cloud properties, affect photochemistry, impact surface air quality, and when deposited impact surface albedo of snow and ice, and modulate carbon dioxide uptake by the land and ocean. Here we present a new compilation of aerosol observations including composition, a methodology for comparing the datasets to model output, and show the implications of these results using one model.
Brooke A. Eastman, William R. Wieder, Melannie D. Hartman, Edward R. Brzostek, and William T. Peterjohn
Biogeosciences, 21, 201–221, https://doi.org/10.5194/bg-21-201-2024, https://doi.org/10.5194/bg-21-201-2024, 2024
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We compared soil model performance to data from a long-term nitrogen addition experiment in a forested ecosystem. We found that in order for soil carbon models to accurately predict future forest carbon sequestration, two key processes must respond dynamically to nitrogen availability: (1) plant allocation of carbon to wood versus roots and (2) rates of soil organic matter decomposition. Long-term experiments can help improve our predictions of the land carbon sink and its climate impact.
Danica L. Lombardozzi, William R. Wieder, Negin Sobhani, Gordon B. Bonan, David Durden, Dawn Lenz, Michael SanClements, Samantha Weintraub-Leff, Edward Ayres, Christopher R. Florian, Kyla Dahlin, Sanjiv Kumar, Abigail L. S. Swann, Claire M. Zarakas, Charles Vardeman, and Valerio Pascucci
Geosci. Model Dev., 16, 5979–6000, https://doi.org/10.5194/gmd-16-5979-2023, https://doi.org/10.5194/gmd-16-5979-2023, 2023
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We present a novel cyberinfrastructure system that uses National Ecological Observatory Network measurements to run Community Terrestrial System Model point simulations in a containerized system. The simple interface and tutorials expand access to data and models used in Earth system research by removing technical barriers and facilitating research, educational opportunities, and community engagement. The NCAR–NEON system enables convergence of climate and ecological sciences.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
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Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Stephen G. Yeager, Nan Rosenbloom, Anne A. Glanville, Xian Wu, Isla Simpson, Hui Li, Maria J. Molina, Kristen Krumhardt, Samuel Mogen, Keith Lindsay, Danica Lombardozzi, Will Wieder, Who M. Kim, Jadwiga H. Richter, Matthew Long, Gokhan Danabasoglu, David Bailey, Marika Holland, Nicole Lovenduski, Warren G. Strand, and Teagan King
Geosci. Model Dev., 15, 6451–6493, https://doi.org/10.5194/gmd-15-6451-2022, https://doi.org/10.5194/gmd-15-6451-2022, 2022
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The Earth system changes over a range of time and space scales, and some of these changes are predictable in advance. Short-term weather forecasts are most familiar, but recent work has shown that it is possible to generate useful predictions several seasons or even a decade in advance. This study focuses on predictions over intermediate timescales (up to 24 months in advance) and shows that there is promising potential to forecast a variety of changes in the natural environment.
Ye Wang, Natalie Mahowald, Peter Hess, Wenxiu Sun, and Gang Chen
Atmos. Chem. Phys., 22, 7575–7592, https://doi.org/10.5194/acp-22-7575-2022, https://doi.org/10.5194/acp-22-7575-2022, 2022
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PM2.5 is positively related to anticyclonic wave activity (AWA) changes close to the observing sites. Changes between current and future climates in AWA can explain up to 75 % of PM2.5 variability at some stations using a linear regression model. Our analysis indicates that higher PM2.5 concentrations occur when a positive AWA anomaly is prominent, which could be critical for understanding how pollutants respond to changing atmospheric circulation and for developing robust pollution projections.
Charles D. Koven, Vivek K. Arora, Patricia Cadule, Rosie A. Fisher, Chris D. Jones, David M. Lawrence, Jared Lewis, Keith Lindsay, Sabine Mathesius, Malte Meinshausen, Michael Mills, Zebedee Nicholls, Benjamin M. Sanderson, Roland Séférian, Neil C. Swart, William R. Wieder, and Kirsten Zickfeld
Earth Syst. Dynam., 13, 885–909, https://doi.org/10.5194/esd-13-885-2022, https://doi.org/10.5194/esd-13-885-2022, 2022
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We explore the long-term dynamics of Earth's climate and carbon cycles under a pair of contrasting scenarios to the year 2300 using six models that include both climate and carbon cycle dynamics. One scenario assumes very high emissions, while the second assumes a peak in emissions, followed by rapid declines to net negative emissions. We show that the models generally agree that warming is roughly proportional to carbon emissions but that many other aspects of the model projections differ.
Toni Viskari, Janne Pusa, Istem Fer, Anna Repo, Julius Vira, and Jari Liski
Geosci. Model Dev., 15, 1735–1752, https://doi.org/10.5194/gmd-15-1735-2022, https://doi.org/10.5194/gmd-15-1735-2022, 2022
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We wanted to examine how the chosen measurement data and calibration process affect soil organic carbon model calibration. In our results we found that there is a benefit in using data from multiple litter-bag decomposition experiments simultaneously, even with the required assumptions. Additionally, due to the amount of noise and uncertainties in the system, more advanced calibration methods should be used to parameterize the models.
Olli Nevalainen, Olli Niemitalo, Istem Fer, Antti Juntunen, Tuomas Mattila, Olli Koskela, Joni Kukkamäki, Layla Höckerstedt, Laura Mäkelä, Pieta Jarva, Laura Heimsch, Henriikka Vekuri, Liisa Kulmala, Åsa Stam, Otto Kuusela, Stephanie Gerin, Toni Viskari, Julius Vira, Jari Hyväluoma, Juha-Pekka Tuovinen, Annalea Lohila, Tuomas Laurila, Jussi Heinonsalo, Tuula Aalto, Iivari Kunttu, and Jari Liski
Geosci. Instrum. Method. Data Syst., 11, 93–109, https://doi.org/10.5194/gi-11-93-2022, https://doi.org/10.5194/gi-11-93-2022, 2022
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Better monitoring of soil carbon sequestration is needed to understand the best carbon farming practices in different soils and climate conditions. We, the Field Observatory Network (FiON), have therefore established a methodology for monitoring and forecasting agricultural carbon sequestration by combining offline and near-real-time field measurements, weather data, satellite imagery, and modeling. To disseminate our work, we built a website called the Field Observatory (fieldobservatory.org).
Julius Vira, Peter Hess, Money Ossohou, and Corinne Galy-Lacaux
Atmos. Chem. Phys., 22, 1883–1904, https://doi.org/10.5194/acp-22-1883-2022, https://doi.org/10.5194/acp-22-1883-2022, 2022
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Ammonia is one of the main components of nitrogen deposition. Here we use a new model to assess the ammonia emissions from agriculture, the largest anthropogenic source of ammonia. The model results are consistent with earlier estimates over industrialized regions in agreement with observations. However, the model predicts much higher emissions over sub-Saharan Africa compared to earlier estimates. Available observations from surface stations and satellites support these higher emissions.
Keith B. Rodgers, Sun-Seon Lee, Nan Rosenbloom, Axel Timmermann, Gokhan Danabasoglu, Clara Deser, Jim Edwards, Ji-Eun Kim, Isla R. Simpson, Karl Stein, Malte F. Stuecker, Ryohei Yamaguchi, Tamás Bódai, Eui-Seok Chung, Lei Huang, Who M. Kim, Jean-François Lamarque, Danica L. Lombardozzi, William R. Wieder, and Stephen G. Yeager
Earth Syst. Dynam., 12, 1393–1411, https://doi.org/10.5194/esd-12-1393-2021, https://doi.org/10.5194/esd-12-1393-2021, 2021
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A large ensemble of simulations with 100 members has been conducted with the state-of-the-art CESM2 Earth system model, using historical and SSP3-7.0 forcing. Our main finding is that there are significant changes in the variance of the Earth system in response to anthropogenic forcing, with these changes spanning a broad range of variables important to impacts for human populations and ecosystems.
William R. Wieder, Derek Pierson, Stevan Earl, Kate Lajtha, Sara G. Baer, Ford Ballantyne, Asmeret Asefaw Berhe, Sharon A. Billings, Laurel M. Brigham, Stephany S. Chacon, Jennifer Fraterrigo, Serita D. Frey, Katerina Georgiou, Marie-Anne de Graaff, A. Stuart Grandy, Melannie D. Hartman, Sarah E. Hobbie, Chris Johnson, Jason Kaye, Emily Kyker-Snowman, Marcy E. Litvak, Michelle C. Mack, Avni Malhotra, Jessica A. M. Moore, Knute Nadelhoffer, Craig Rasmussen, Whendee L. Silver, Benjamin N. Sulman, Xanthe Walker, and Samantha Weintraub
Earth Syst. Sci. Data, 13, 1843–1854, https://doi.org/10.5194/essd-13-1843-2021, https://doi.org/10.5194/essd-13-1843-2021, 2021
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Data collected from research networks present opportunities to test theories and develop models about factors responsible for the long-term persistence and vulnerability of soil organic matter (SOM). Here we present the SOils DAta Harmonization database (SoDaH), a flexible database designed to harmonize diverse SOM datasets from multiple research networks.
Emily Kyker-Snowman, William R. Wieder, Serita D. Frey, and A. Stuart Grandy
Geosci. Model Dev., 13, 4413–4434, https://doi.org/10.5194/gmd-13-4413-2020, https://doi.org/10.5194/gmd-13-4413-2020, 2020
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Microbes drive carbon (C) and nitrogen (N) transformations in soil, and soil models have started to include explicit microbial physiology and functioning to try to reduce uncertainty in soil–climate feedbacks. Here, we add N cycling to a microbially explicit soil C model and reproduce C and N dynamics in soil during litter decomposition across a range of sites. We discuss model-generated hypotheses about soil C and N cycling and highlight the need for landscape-scale model evaluation data.
Rostislav Kouznetsov, Mikhail Sofiev, Julius Vira, and Gabriele Stiller
Atmos. Chem. Phys., 20, 5837–5859, https://doi.org/10.5194/acp-20-5837-2020, https://doi.org/10.5194/acp-20-5837-2020, 2020
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Estimates of the age of stratospheric air (AoA), its distribution, and trends, obtained by different experimental methods, differ among each other. AoA derived form MIPAS satellite observations, the richest observational dataset on sulfur hexafluoride (SF6) in the stratosphere, are a clear outlier. With multi-decade simulations of AoA and SF6 in the stratosphere, we show that the origin of the discrepancy is in a methodology of deriving AoA from observations rather than in observational data.
Susanna Salminen-Paatero, Julius Vira, and Jussi Paatero
Atmos. Chem. Phys., 20, 5759–5769, https://doi.org/10.5194/acp-20-5759-2020, https://doi.org/10.5194/acp-20-5759-2020, 2020
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We measured concentrations and isotope ratios of plutonium in air filters collected in Finnish Lapland in 1965–2011. Radioactive-contamination sources were global nuclear-testing fallout and the Fukushima and SNAP-9A accidents. Both real and hypothetical nuclear accidents were studied with atmospheric-dispersion modeling. The radioactive-contamination effect on Finnish Lapland would be minor from an intended nuclear power plant and negligible from a floating nuclear reactor in the Barents Sea.
Samantha J. Basile, Xin Lin, William R. Wieder, Melannie D. Hartman, and Gretchen Keppel-Aleks
Biogeosciences, 17, 1293–1308, https://doi.org/10.5194/bg-17-1293-2020, https://doi.org/10.5194/bg-17-1293-2020, 2020
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Soil heterotrophic respiration (HR) is an important component of land–atmosphere carbon exchange but is difficult to observe globally. We analyzed the imprint that this flux leaves on atmospheric CO2 using a set of simulations from HR models with common inputs. Models that represent microbial processes are more variable and have stronger temperature sensitivity than those that do not. Our results show that we can use atmospheric CO2 observations to evaluate and improve models of HR.
Anne-Marlene Blechschmidt, Joaquim Arteta, Adriana Coman, Lyana Curier, Henk Eskes, Gilles Foret, Clio Gielen, Francois Hendrick, Virginie Marécal, Frédérik Meleux, Jonathan Parmentier, Enno Peters, Gaia Pinardi, Ankie J. M. Piters, Matthieu Plu, Andreas Richter, Arjo Segers, Mikhail Sofiev, Álvaro M. Valdebenito, Michel Van Roozendael, Julius Vira, Tim Vlemmix, and John P. Burrows
Atmos. Chem. Phys., 20, 2795–2823, https://doi.org/10.5194/acp-20-2795-2020, https://doi.org/10.5194/acp-20-2795-2020, 2020
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MAX-DOAS tropospheric NO2 vertical column retrievals from a set of European measurement stations are compared to regional air quality models which contribute to the operational Copernicus Atmosphere Monitoring Service (CAMS). Correlations are on the order of 35 %–75 %; large differences occur for individual pollution plumes. The results demonstrate that future model development needs to concentrate on improving representation of diurnal cycles and associated temporal scalings.
Wenxiu Sun, Peter Hess, Gang Chen, and Simone Tilmes
Atmos. Chem. Phys., 19, 12917–12933, https://doi.org/10.5194/acp-19-12917-2019, https://doi.org/10.5194/acp-19-12917-2019, 2019
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Using both observations and a chemistry climate–model we establish that in most locations changes in the waviness of the 500 hPa flow field, as measured by the local anticyclonic wave activity (AWA), explain a significant fraction of the interannual variability in surface ozone over the United States. In addition, we find that the change in AWA in a future climate (circa 2100) is predicted to cause a change in surface ozone ranging between –6 ppb and 6 ppb.
Susan J. Cheng, Peter G. Hess, William R. Wieder, R. Quinn Thomas, Knute J. Nadelhoffer, Julius Vira, Danica L. Lombardozzi, Per Gundersen, Ivan J. Fernandez, Patrick Schleppi, Marie-Cécile Gruselle, Filip Moldan, and Christine L. Goodale
Biogeosciences, 16, 2771–2793, https://doi.org/10.5194/bg-16-2771-2019, https://doi.org/10.5194/bg-16-2771-2019, 2019
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Nitrogen deposition and fertilizer can change how much carbon is stored in plants and soils. Understanding how much added nitrogen is recovered in plants or soils is critical to estimating the size of the future land carbon sink. We compared how nitrogen additions are recovered in modeled soil and plant stocks against data from long-term nitrogen addition experiments. We found that the model simulates recovery of added nitrogen into soils through a different process than found in the field.
Arlene M. Fiore, Emily V. Fischer, George P. Milly, Shubha Pandey Deolal, Oliver Wild, Daniel A. Jaffe, Johannes Staehelin, Olivia E. Clifton, Dan Bergmann, William Collins, Frank Dentener, Ruth M. Doherty, Bryan N. Duncan, Bernd Fischer, Stefan Gilge, Peter G. Hess, Larry W. Horowitz, Alexandru Lupu, Ian A. MacKenzie, Rokjin Park, Ludwig Ries, Michael G. Sanderson, Martin G. Schultz, Drew T. Shindell, Martin Steinbacher, David S. Stevenson, Sophie Szopa, Christoph Zellweger, and Guang Zeng
Atmos. Chem. Phys., 18, 15345–15361, https://doi.org/10.5194/acp-18-15345-2018, https://doi.org/10.5194/acp-18-15345-2018, 2018
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We demonstrate a proof-of-concept approach for applying northern midlatitude mountaintop peroxy acetyl nitrate (PAN) measurements and a multi-model ensemble during April to constrain the influence of continental-scale anthropogenic precursor emissions on PAN. Our findings imply a role for carefully coordinated multi-model ensembles in helping identify observations for discriminating among widely varying (and poorly constrained) model responses of atmospheric constituents to changes in emissions.
Pakawat Phalitnonkiat, Peter G. M. Hess, Mircea D. Grigoriu, Gennady Samorodnitsky, Wenxiu Sun, Ellie Beaudry, Simone Tilmes, Makato Deushi, Beatrice Josse, David Plummer, and Kengo Sudo
Atmos. Chem. Phys., 18, 11927–11948, https://doi.org/10.5194/acp-18-11927-2018, https://doi.org/10.5194/acp-18-11927-2018, 2018
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The co-occurrence of heat waves and pollution events and the resulting high mortality rates emphasize the importance of the co-occurrence of pollution and temperature extremes. We analyze ozone and temperature extremes and their joint occurrence over the United States during the summer months (JJA) in measurement data and in model simulations of the present and future climates.
Mikhail Sofiev, Olga Ritenberga, Roberto Albertini, Joaquim Arteta, Jordina Belmonte, Carmi Geller Bernstein, Maira Bonini, Sevcan Celenk, Athanasios Damialis, John Douros, Hendrik Elbern, Elmar Friese, Carmen Galan, Gilles Oliver, Ivana Hrga, Rostislav Kouznetsov, Kai Krajsek, Donat Magyar, Jonathan Parmentier, Matthieu Plu, Marje Prank, Lennart Robertson, Birthe Marie Steensen, Michel Thibaudon, Arjo Segers, Barbara Stepanovich, Alvaro M. Valdebenito, Julius Vira, and Despoina Vokou
Atmos. Chem. Phys., 17, 12341–12360, https://doi.org/10.5194/acp-17-12341-2017, https://doi.org/10.5194/acp-17-12341-2017, 2017
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This work presents the features and evaluates the quality of the Copernicus Atmospheric Monitoring Service forecasts of olive pollen distribution in Europe. It is shown that the models can predict the main features of the observed pollen distribution but have more difficulties in capturing the season start and end, which appeared shifted by a few days. We also demonstrated that the combined use of model predictions with up-to-date measurements (data fusion) can strongly improve the results.
Julius Vira, Elisa Carboni, Roy G. Grainger, and Mikhail Sofiev
Geosci. Model Dev., 10, 1985–2008, https://doi.org/10.5194/gmd-10-1985-2017, https://doi.org/10.5194/gmd-10-1985-2017, 2017
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The vertical and temporal distributions of sulfur dioxide emissions during the 2010 eruption of Eyjafjallajökull were reconstructed by combining data from the IASI satellite instrument with a dispersion model. Unlike in previous studies, both column density (the total amount above a given point) and the plume height were derived from the satellite data. This resulted in more accurate simulated vertical distributions for the times when the emission was not constrained by the column densities.
Stuart Riddick, Daniel Ward, Peter Hess, Natalie Mahowald, Raia Massad, and Elisabeth Holland
Biogeosciences, 13, 3397–3426, https://doi.org/10.5194/bg-13-3397-2016, https://doi.org/10.5194/bg-13-3397-2016, 2016
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Future increases are predicted in the amount of nitrogen produced as manure or used as synthetic fertilizer in agriculture. However, the impact of climate on the subsequent fate of this nitrogen has not been evaluated. Here we describe, analyze and evaluate the FAN (flows of agricultural nitrogen) process model that simulates the the climate-dependent flows of nitrogen from agriculture. The FAN model is suitable for use within a global terrestrial climate model.
M. Sofiev, J. Vira, R. Kouznetsov, M. Prank, J. Soares, and E. Genikhovich
Geosci. Model Dev., 8, 3497–3522, https://doi.org/10.5194/gmd-8-3497-2015, https://doi.org/10.5194/gmd-8-3497-2015, 2015
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The paper presents a transport mechanism of SILAM CTM based on an algorithm of M. Galperin. We describe the original scheme and its updates needed for applications to long-living species, complex atmospheric flows, etc. The scheme is connected to vertical diffusion, chemical transformation and deposition algorithms. Quality of the advection routine is evaluated with a large set of tests, which showed performance fully comparable with state-of-the-art algorithms at much lower computational costs.
V. Marécal, V.-H. Peuch, C. Andersson, S. Andersson, J. Arteta, M. Beekmann, A. Benedictow, R. Bergström, B. Bessagnet, A. Cansado, F. Chéroux, A. Colette, A. Coman, R. L. Curier, H. A. C. Denier van der Gon, A. Drouin, H. Elbern, E. Emili, R. J. Engelen, H. J. Eskes, G. Foret, E. Friese, M. Gauss, C. Giannaros, J. Guth, M. Joly, E. Jaumouillé, B. Josse, N. Kadygrov, J. W. Kaiser, K. Krajsek, J. Kuenen, U. Kumar, N. Liora, E. Lopez, L. Malherbe, I. Martinez, D. Melas, F. Meleux, L. Menut, P. Moinat, T. Morales, J. Parmentier, A. Piacentini, M. Plu, A. Poupkou, S. Queguiner, L. Robertson, L. Rouïl, M. Schaap, A. Segers, M. Sofiev, L. Tarasson, M. Thomas, R. Timmermans, Á. Valdebenito, P. van Velthoven, R. van Versendaal, J. Vira, and A. Ung
Geosci. Model Dev., 8, 2777–2813, https://doi.org/10.5194/gmd-8-2777-2015, https://doi.org/10.5194/gmd-8-2777-2015, 2015
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This paper describes the air quality forecasting system over Europe put in place in the Monitoring Atmospheric Composition and Climate projects. It provides daily and 4-day forecasts and analyses for the previous day for major gas and particulate pollutants and their main precursors. These products are based on a multi-model approach using seven state-of-the-art models developed in Europe. An evaluation of the performance of the system is discussed in the paper.
M. Sofiev, U. Berger, M. Prank, J. Vira, J. Arteta, J. Belmonte, K.-C. Bergmann, F. Chéroux, H. Elbern, E. Friese, C. Galan, R. Gehrig, D. Khvorostyanov, R. Kranenburg, U. Kumar, V. Marécal, F. Meleux, L. Menut, A.-M. Pessi, L. Robertson, O. Ritenberga, V. Rodinkova, A. Saarto, A. Segers, E. Severova, I. Sauliene, P. Siljamo, B. M. Steensen, E. Teinemaa, M. Thibaudon, and V.-H. Peuch
Atmos. Chem. Phys., 15, 8115–8130, https://doi.org/10.5194/acp-15-8115-2015, https://doi.org/10.5194/acp-15-8115-2015, 2015
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The paper presents the first ensemble modelling experiment for forecasting the atmospheric dispersion of birch pollen in Europe. The study included 7 models of MACC-ENS tested over the season of 2010 and applied for 2013 in forecasting and reanalysis modes. The results were compared with observations in 11 countries, members of European Aeroallergen Network. The models successfully reproduced the timing of the unusually late season of 2013 but had more difficulties with absolute concentration.
L. Meng, R. Paudel, P. G. M. Hess, and N. M. Mahowald
Biogeosciences, 12, 4029–4049, https://doi.org/10.5194/bg-12-4029-2015, https://doi.org/10.5194/bg-12-4029-2015, 2015
W. R. Wieder, A. S. Grandy, C. M. Kallenbach, P. G. Taylor, and G. B. Bonan
Geosci. Model Dev., 8, 1789–1808, https://doi.org/10.5194/gmd-8-1789-2015, https://doi.org/10.5194/gmd-8-1789-2015, 2015
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Projecting biogeochemical responses to environmental change requires multi-scaled perspectives. However, microbes, the drivers of soil organic matter decomposition and stabilization, remain notably absent from models used to project carbon cycle–climate feedbacks. Here, we apply and evaluate representations of microbial functional diversity across scales and find that such representations may be critical to accurately project soil carbon dynamics in a changing world.
M. Bocquet, H. Elbern, H. Eskes, M. Hirtl, R. Žabkar, G. R. Carmichael, J. Flemming, A. Inness, M. Pagowski, J. L. Pérez Camaño, P. E. Saide, R. San Jose, M. Sofiev, J. Vira, A. Baklanov, C. Carnevale, G. Grell, and C. Seigneur
Atmos. Chem. Phys., 15, 5325–5358, https://doi.org/10.5194/acp-15-5325-2015, https://doi.org/10.5194/acp-15-5325-2015, 2015
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Data assimilation is used in atmospheric chemistry models to improve air quality forecasts, construct re-analyses of concentrations, and perform inverse modeling. Coupled chemistry meteorology models (CCMM) are atmospheric chemistry models that simulate meteorological processes and chemical transformations jointly. We review here the current status of data assimilation in atmospheric chemistry models, with a particular focus on future prospects for data assimilation in CCMM.
P. Hess, D. Kinnison, and Q. Tang
Atmos. Chem. Phys., 15, 2341–2365, https://doi.org/10.5194/acp-15-2341-2015, https://doi.org/10.5194/acp-15-2341-2015, 2015
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Using a series of model simulations, we find that at widespread NH extratropical locations, interannual tropospheric ozone variability is largely determined by the transport of ozone from the stratosphere. This has implications in the interpretation of measured tropospheric ozone variability in light of changes in the emissions of ozone precursors and in the response of tropospheric ozone to climate change.
J. Vira and M. Sofiev
Geosci. Model Dev., 8, 191–203, https://doi.org/10.5194/gmd-8-191-2015, https://doi.org/10.5194/gmd-8-191-2015, 2015
W. Sun, P. Hess, and B. Tian
Atmos. Chem. Phys., 14, 11775–11790, https://doi.org/10.5194/acp-14-11775-2014, https://doi.org/10.5194/acp-14-11775-2014, 2014
W. R. Wieder, A. S. Grandy, C. M. Kallenbach, and G. B. Bonan
Biogeosciences, 11, 3899–3917, https://doi.org/10.5194/bg-11-3899-2014, https://doi.org/10.5194/bg-11-3899-2014, 2014
Y. P. Wang, B. C. Chen, W. R. Wieder, M. Leite, B. E. Medlyn, M. Rasmussen, M. J. Smith, F. B. Agusto, F. Hoffman, and Y. Q. Luo
Biogeosciences, 11, 1817–1831, https://doi.org/10.5194/bg-11-1817-2014, https://doi.org/10.5194/bg-11-1817-2014, 2014
D. A. Belikov, S. Maksyutov, M. Krol, A. Fraser, M. Rigby, H. Bian, A. Agusti-Panareda, D. Bergmann, P. Bousquet, P. Cameron-Smith, M. P. Chipperfield, A. Fortems-Cheiney, E. Gloor, K. Haynes, P. Hess, S. Houweling, S. R. Kawa, R. M. Law, Z. Loh, L. Meng, P. I. Palmer, P. K. Patra, R. G. Prinn, R. Saito, and C. Wilson
Atmos. Chem. Phys., 13, 1093–1114, https://doi.org/10.5194/acp-13-1093-2013, https://doi.org/10.5194/acp-13-1093-2013, 2013
L. K. Emmons, P. G. Hess, J.-F. Lamarque, and G. G. Pfister
Geosci. Model Dev., 5, 1531–1542, https://doi.org/10.5194/gmd-5-1531-2012, https://doi.org/10.5194/gmd-5-1531-2012, 2012
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The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
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Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
EGUsphere, https://doi.org/10.5194/egusphere-2023-2996, https://doi.org/10.5194/egusphere-2023-2996, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. Here we test a technique called “History matching” against more common approaches. This method adapts well to these models, helping better understand how they work and therefore how to make them more realistic.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Dongyu Zheng, Andrew Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-230, https://doi.org/10.5194/gmd-2023-230, 2024
Revised manuscript accepted for GMD
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This study uses a deep learning method to enhance the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model for more accurate predictions of climate shifts. The method may be critical in developing new fully-continuous methods that are able to translate over a moving continental surface in deep time with high-resolution at a reasonable computational expense.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-242, https://doi.org/10.5194/gmd-2023-242, 2024
Revised manuscript accepted for GMD
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems as the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
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This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-238, https://doi.org/10.5194/gmd-2023-238, 2023
Revised manuscript accepted for GMD
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through “data assimilation”, which blends numerical models and observations. Here, we present EAT, a flexible and efficient testbed that allows any scientist to explore and further develop the state-of-the-art in data assimilation.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
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We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
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Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
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The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
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We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
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Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
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We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
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Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
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In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
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Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
EGUsphere, https://doi.org/10.5194/egusphere-2023-1955, https://doi.org/10.5194/egusphere-2023-1955, 2023
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In this work, Nanjing University Carbon Assimilation System (NUCAS) was developed. Data assimilation experiments were conducted to demonstrate the robustness and to investigate the feasibility and applicability of NUCAS. The assimilation of COS significantly improved the model performance in gross primary productivity, sensible heat, latent heat and even soil moisture, demonstrating that COS can provide strong constraints on parameters relevant to water, energy and carbon processes.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
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This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
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Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Stefano Manzoni, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
EGUsphere, https://doi.org/10.5194/egusphere-2023-1523, https://doi.org/10.5194/egusphere-2023-1523, 2023
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Improving representation of peatlands in Earth system models (ESMs) (e.g., in Yasso soil C model coupled with JSBACH model) is rare. We updated Yasso07 moisture dependency for applications on both the mineral soils and peatlands of boreal forest. Our moisture function improved the simulated peatland C stocks and CO2 dynamics. However, due to nature of the measurements used for Bayesian MCMC data assimilation, it contrasts with functions in other ESMs (see graphical abstract).
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
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Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
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Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
Jens Heinke, Susanne Rolinski, and Christoph Müller
Geosci. Model Dev., 16, 2455–2475, https://doi.org/10.5194/gmd-16-2455-2023, https://doi.org/10.5194/gmd-16-2455-2023, 2023
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We develop a livestock module for the global vegetation model LPJmL5.0 to simulate the impact of grazing dairy cattle on carbon and nitrogen cycles in grasslands. A novelty of the approach is that it accounts for the effect of feed quality on feed uptake and feed utilization by animals. The portioning of dietary nitrogen into milk, feces, and urine shows very good agreement with estimates obtained from animal trials.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina M. Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander W. Cheesman, Yansen Xu, and Maria Carolina Duran Rojas
Geosci. Model Dev., 16, 2261–2276, https://doi.org/10.5194/gmd-16-2261-2023, https://doi.org/10.5194/gmd-16-2261-2023, 2023
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Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained nor fully implemented in large-scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP, with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Winslow D. Hansen, Adrianna Foster, Benjamin Gaglioti, Rupert Seidl, and Werner Rammer
Geosci. Model Dev., 16, 2011–2036, https://doi.org/10.5194/gmd-16-2011-2023, https://doi.org/10.5194/gmd-16-2011-2023, 2023
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Permafrost and the thick soil-surface organic layers that insulate permafrost are important controls of boreal forest dynamics and carbon cycling. However, both are rarely included in process-based vegetation models used to simulate future ecosystem trajectories. To address this challenge, we developed a computationally efficient permafrost and soil organic layer module that operates at fine spatial (1 ha) and temporal (daily) resolutions.
Heewon Jung, Hyun-Seob Song, and Christof Meile
Geosci. Model Dev., 16, 1683–1696, https://doi.org/10.5194/gmd-16-1683-2023, https://doi.org/10.5194/gmd-16-1683-2023, 2023
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Microbial activity responsible for many chemical transformations depends on environmental conditions. These can vary locally, e.g., between poorly connected pores in porous media. We present a modeling framework that resolves such small spatial scales explicitly, accounts for feedback between transport and biogeochemical conditions, and can integrate state-of-the-art representations of microbes in a computationally efficient way, making it broadly applicable in science and engineering use cases.
Arthur Guignabert, Quentin Ponette, Frédéric André, Christian Messier, Philippe Nolet, and Mathieu Jonard
Geosci. Model Dev., 16, 1661–1682, https://doi.org/10.5194/gmd-16-1661-2023, https://doi.org/10.5194/gmd-16-1661-2023, 2023
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Spatially explicit and process-based models are useful to test innovative forestry practices under changing and uncertain conditions. However, their larger use is often limited by the restricted range of species and stand structures they can reliably account for. We therefore calibrated and evaluated such a model, HETEROFOR, for 23 species across southern Québec. Our results showed that the model is robust and can predict accurately both individual tree growth and stand dynamics in this region.
Maureen Beaudor, Nicolas Vuichard, Juliette Lathière, Nikolaos Evangeliou, Martin Van Damme, Lieven Clarisse, and Didier Hauglustaine
Geosci. Model Dev., 16, 1053–1081, https://doi.org/10.5194/gmd-16-1053-2023, https://doi.org/10.5194/gmd-16-1053-2023, 2023
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Ammonia mainly comes from the agricultural sector, and its volatilization relies on environmental variables. Our approach aims at benefiting from an Earth system model framework to estimate it. By doing so, we represent a consistent spatial distribution of the emissions' response to environmental changes.
We greatly improved the seasonal cycle of emissions compared with previous work. In addition, our model includes natural soil emissions (that are rarely represented in modeling approaches).
Rui Ying, Fanny M. Monteiro, Jamie D. Wilson, and Daniela N. Schmidt
Geosci. Model Dev., 16, 813–832, https://doi.org/10.5194/gmd-16-813-2023, https://doi.org/10.5194/gmd-16-813-2023, 2023
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Planktic foraminifera are marine-calcifying zooplankton; their shells are widely used to measure past temperature and productivity. We developed ForamEcoGEnIE 2.0 to simulate the four subgroups of this organism. We found that the relative abundance distribution agrees with marine sediment core-top data and that carbon export and biomass are close to sediment trap and plankton net observations respectively. This model provides the opportunity to study foraminiferal ecology in any geological era.
Onur Kerimoglu, Markus Pahlow, Prima Anugerahanti, and Sherwood Lan Smith
Geosci. Model Dev., 16, 95–108, https://doi.org/10.5194/gmd-16-95-2023, https://doi.org/10.5194/gmd-16-95-2023, 2023
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In classical models that track the changes in the elemental composition of phytoplankton, additional state variables are required for each element resolved. In this study, we show how the behavior of such an explicit model can be approximated using an
instantaneous acclimationapproach, in which the elemental composition of the phytoplankton is assumed to adjust to an optimal value instantaneously. Through rigorous tests, we evaluate the consistency of this scheme.
Yuan Zhang, Devaraju Narayanappa, Philippe Ciais, Wei Li, Daniel Goll, Nicolas Vuichard, Martin G. De Kauwe, Laurent Li, and Fabienne Maignan
Geosci. Model Dev., 15, 9111–9125, https://doi.org/10.5194/gmd-15-9111-2022, https://doi.org/10.5194/gmd-15-9111-2022, 2022
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There are a few studies to examine if current models correctly represented the complex processes of transpiration. Here, we use a coefficient Ω, which indicates if transpiration is mainly controlled by vegetation processes or by turbulence, to evaluate the ORCHIDEE model. We found a good performance of ORCHIDEE, but due to compensation of biases in different processes, we also identified how different factors control Ω and where the model is wrong. Our method is generic to evaluate other models.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
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Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Arsène Druel, Simon Munier, Anthony Mucia, Clément Albergel, and Jean-Christophe Calvet
Geosci. Model Dev., 15, 8453–8471, https://doi.org/10.5194/gmd-15-8453-2022, https://doi.org/10.5194/gmd-15-8453-2022, 2022
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Crop phenology and irrigation is implemented into a land surface model able to work at a global scale. A case study is presented over Nebraska (USA). Simulations with and without the new scheme are compared to different satellite-based observations. The model is able to produce a realistic yearly irrigation water amount. The irrigation scheme improves the simulated leaf area index, gross primary productivity, evapotransipiration, and land surface temperature.
Thomas Wutzler, Lin Yu, Marion Schrumpf, and Sönke Zaehle
Geosci. Model Dev., 15, 8377–8393, https://doi.org/10.5194/gmd-15-8377-2022, https://doi.org/10.5194/gmd-15-8377-2022, 2022
Short summary
Short summary
Soil microbes process soil organic matter and affect carbon storage and plant nutrition at the ecosystem scale. We hypothesized that decadal dynamics is constrained by the ratios of elements in litter inputs, microbes, and matter and that microbial community optimizes growth. This allowed the SESAM model to descibe decadal-term carbon sequestration in soils and other biogeochemical processes explicitly accounting for microbial processes but without its problematic fine-scale parameterization.
Ensheng Weng, Igor Aleinov, Ram Singh, Michael J. Puma, Sonali S. McDermid, Nancy Y. Kiang, Maxwell Kelley, Kevin Wilcox, Ray Dybzinski, Caroline E. Farrior, Stephen W. Pacala, and Benjamin I. Cook
Geosci. Model Dev., 15, 8153–8180, https://doi.org/10.5194/gmd-15-8153-2022, https://doi.org/10.5194/gmd-15-8153-2022, 2022
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We develop a demographic vegetation model to improve the representation of terrestrial vegetation dynamics and ecosystem biogeochemical cycles in the Goddard Institute for Space Studies ModelE. The individual-based competition for light and soil resources makes the modeling of eco-evolutionary optimality possible. This model will enable ModelE to simulate long-term biogeophysical and biogeochemical feedbacks between the climate system and land ecosystems at decadal to centurial temporal scales.
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Short summary
Mostly emitted by the agricultural sector, ammonia has an important role in atmospheric chemistry. We developed a model to simulate how ammonia emissions respond to changes in temperature and soil moisture, and we evaluated agricultural ammonia emissions globally. The simulated emissions agree with earlier estimates over many regions, but the results highlight the variability of ammonia emissions and suggest that emissions in warm climates may be higher than previously thought.
Mostly emitted by the agricultural sector, ammonia has an important role in atmospheric...
