Articles | Volume 9, issue 3
https://doi.org/10.5194/gmd-9-927-2016
https://doi.org/10.5194/gmd-9-927-2016
Development and technical paper
 | 
04 Mar 2016
Development and technical paper |  | 04 Mar 2016

Addressing numerical challenges in introducing a reactive transport code into a land surface model: a biogeochemical modeling proof-of-concept with CLM–PFLOTRAN 1.0

Guoping Tang, Fengming Yuan, Gautam Bisht, Glenn E. Hammond, Peter C. Lichtner, Jitendra Kumar, Richard T. Mills, Xiaofeng Xu, Ben Andre, Forrest M. Hoffman, Scott L. Painter, and Peter E. Thornton

Related authors

Biogeochemical modeling of CO2 and CH4 production in anoxic Arctic soil microcosms
Guoping Tang, Jianqiu Zheng, Xiaofeng Xu, Ziming Yang, David E. Graham, Baohua Gu, Scott L. Painter, and Peter E. Thornton
Biogeosciences, 13, 5021–5041, https://doi.org/10.5194/bg-13-5021-2016,https://doi.org/10.5194/bg-13-5021-2016, 2016
Short summary

Related subject area

Climate and Earth system modeling
Software sustainability of global impact models
Emmanuel Nyenah, Petra Döll, Daniel S. Katz, and Robert Reinecke
Geosci. Model Dev., 17, 8593–8611, https://doi.org/10.5194/gmd-17-8593-2024,https://doi.org/10.5194/gmd-17-8593-2024, 2024
Short summary
fair-calibrate v1.4.1: calibration, constraining, and validation of the FaIR simple climate model for reliable future climate projections
Chris Smith, Donald P. Cummins, Hege-Beate Fredriksen, Zebedee Nicholls, Malte Meinshausen, Myles Allen, Stuart Jenkins, Nicholas Leach, Camilla Mathison, and Antti-Ilari Partanen
Geosci. Model Dev., 17, 8569–8592, https://doi.org/10.5194/gmd-17-8569-2024,https://doi.org/10.5194/gmd-17-8569-2024, 2024
Short summary
ISOM 1.0: a fully mesoscale-resolving idealized Southern Ocean model and the diversity of multiscale eddy interactions
Jingwei Xie, Xi Wang, Hailong Liu, Pengfei Lin, Jiangfeng Yu, Zipeng Yu, Junlin Wei, and Xiang Han
Geosci. Model Dev., 17, 8469–8493, https://doi.org/10.5194/gmd-17-8469-2024,https://doi.org/10.5194/gmd-17-8469-2024, 2024
Short summary
A computationally lightweight model for ensemble forecasting of environmental hazards: General TAMSAT-ALERT v1.2.1
Emily Black, John Ellis, and Ross I. Maidment
Geosci. Model Dev., 17, 8353–8372, https://doi.org/10.5194/gmd-17-8353-2024,https://doi.org/10.5194/gmd-17-8353-2024, 2024
Short summary
Introducing the MESMER-M-TPv0.1.0 module: spatially explicit Earth system model emulation for monthly precipitation and temperature
Sarah Schöngart, Lukas Gudmundsson, Mathias Hauser, Peter Pfleiderer, Quentin Lejeune, Shruti Nath, Sonia Isabelle Seneviratne, and Carl-Friedrich Schleussner
Geosci. Model Dev., 17, 8283–8320, https://doi.org/10.5194/gmd-17-8283-2024,https://doi.org/10.5194/gmd-17-8283-2024, 2024
Short summary

Cited articles

Bethke, C. M.: Geochemical and Biogeochemical Reaction Modeling, Cambridge University Press, 2007.
Bonan, G. B., Hartman, M. D., Parton, W. J., and Wieder, W. R.: Evaluating litter decomposition in earth system models with long-term litterbag experiments: an example using the Community Land Model version 4 (CLM4), Glob. Change Biol., 19, 957–974, https://doi.org/10.1111/gcb.12031, 2012.
Boyer, E. W., Alexander, R. B., Parton, W. J., Li, C., Butterbach-Bahl, K., Donner, S. D., Skaggs, R. W., and Grosso, S. J. D.: Modeling denitrification in terrestrial and aquatic ecosystems at regional scales, Ecol. Appl., 16, 2123–2142, https://doi.org/10.1890/1051-0761(2006)016[2123:MDITAA]2.0.CO;2, 2006.
Conrad, R.: Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO), Microbi. Rev., 60, 609–640, available at: http://mmbr.asm.org/content/60/4/609.full.pdf (last access: 14 December 2015), 8987358[pmid], 1996.
da Costa, A. C. L., Galbraith, D., Almeida, S., Portela, B. T. T., da Costa, M., de Athaydes Silva Junior, J., Braga, A. P., de Gonçalves, P. H. L., de Oliveira, A. A. R., Fisher, R., Phillips, O. L., Metcalfe, D. B., Levy, P., and Meir, P.: Effect of 7 yr of experimental drought on vegetation dynamics and biomass storage of an eastern Amazonian rainforest, New Phytol., 187, 579–591, https://doi.org/10.1111/j.1469-8137.2010.03309.x, 2010.
Download
Short summary
We demonstrate that CLM-PFLOTRAN predictions are consistent with CLM4.5 for Arctic, temperate, and tropical sites. A tight relative tolerance may be needed to avoid false convergence when scaling, clipping, or log transformation is used to avoid negative concentration in implicit time stepping and Newton-Raphson methods. The log transformation method is accurate and robust while relaxing relative tolerance or using the clipping or scaling method can result in efficient solutions.