Articles | Volume 9, issue 3
https://doi.org/10.5194/gmd-9-927-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-9-927-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Development and technical paper
| 
04 Mar 2016
Development and technical paper |
| 04 Mar 2016
Addressing numerical challenges in introducing a reactive transport code into a land surface model: a biogeochemical modeling proof-of-concept with CLM–PFLOTRAN 1.0
Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
Fengming Yuan
Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
Gautam Bisht
Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
Lawrence Berkeley National Laboratory, Berkeley, California, USA
Glenn E. Hammond
Pacific Northwest National Laboratory, Richland, Washington, USA
Sandia National Laboratories, Albuquerque, New Mexico, USA
Peter C. Lichtner
OFM Research–Southwest, Santa Fe, New Mexico, USA
Jitendra Kumar
Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
Richard T. Mills
Intel Corporation, Hillsboro, Oregon, USA
Xiaofeng Xu
Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
San Diego State University, San Diego, California, USA
Ben Andre
Lawrence Berkeley National Laboratory, Berkeley, California, USA
National Center for Atmospheric Research, Boulder, Colorado, USA
Forrest M. Hoffman
Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
Scott L. Painter
Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
Peter E. Thornton
Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
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Yilin Fang, L. Ruby Leung, Charles D. Koven, Gautam Bisht, Matteo Detto, Yanyan Cheng, Nate McDowell, Helene Muller-Landau, S. Joseph Wright, and Jeffrey Q. Chambers
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Meng Huang, Po-Lun Ma, Nathaniel W. Chaney, Dalei Hao, Gautam Bisht, Megan D. Fowler, Vincent E. Larson, and L. Ruby Leung
Geosci. Model Dev., 15, 6371–6384, https://doi.org/10.5194/gmd-15-6371-2022, https://doi.org/10.5194/gmd-15-6371-2022, 2022
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Lingcheng Li, Gautam Bisht, and L. Ruby Leung
Geosci. Model Dev., 15, 5489–5510, https://doi.org/10.5194/gmd-15-5489-2022, https://doi.org/10.5194/gmd-15-5489-2022, 2022
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Donghui Xu, Gautam Bisht, Khachik Sargsyan, Chang Liao, and L. Ruby Leung
Geosci. Model Dev., 15, 5021–5043, https://doi.org/10.5194/gmd-15-5021-2022, https://doi.org/10.5194/gmd-15-5021-2022, 2022
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Shuang Ma, Lifen Jiang, Rachel M. Wilson, Jeff P. Chanton, Scott Bridgham, Shuli Niu, Colleen M. Iversen, Avni Malhotra, Jiang Jiang, Xingjie Lu, Yuanyuan Huang, Jason Keller, Xiaofeng Xu, Daniel M. Ricciuto, Paul J. Hanson, and Yiqi Luo
Biogeosciences, 19, 2245–2262, https://doi.org/10.5194/bg-19-2245-2022, https://doi.org/10.5194/bg-19-2245-2022, 2022
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Dóra Hidy, Zoltán Barcza, Roland Hollós, Laura Dobor, Tamás Ács, Dóra Zacháry, Tibor Filep, László Pásztor, Dóra Incze, Márton Dencső, Eszter Tóth, Katarína Merganičová, Peter Thornton, Steven Running, and Nándor Fodor
Geosci. Model Dev., 15, 2157–2181, https://doi.org/10.5194/gmd-15-2157-2022, https://doi.org/10.5194/gmd-15-2157-2022, 2022
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Biogeochemical models used by the scientific community can support society in the quantification of the expected environmental impacts caused by global climate change. The Biome-BGCMuSo v6.2 biogeochemical model has been created by implementing a lot of developments related to soil hydrology as well as the soil carbon and nitrogen cycle and by integrating crop model components. Detailed descriptions of developments with case studies are presented in this paper.
Martijn M. T. A. Pallandt, Jitendra Kumar, Marguerite Mauritz, Edward A. G. Schuur, Anna-Maria Virkkala, Gerardo Celis, Forrest M. Hoffman, and Mathias Göckede
Biogeosciences, 19, 559–583, https://doi.org/10.5194/bg-19-559-2022, https://doi.org/10.5194/bg-19-559-2022, 2022
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Hui Tao, Kaishan Song, Ge Liu, Qiang Wang, Zhidan Wen, Pierre-Andre Jacinthe, Xiaofeng Xu, Jia Du, Yingxin Shang, Sijia Li, Zongming Wang, Lili Lyu, Junbin Hou, Xiang Wang, Dong Liu, Kun Shi, Baohua Zhang, and Hongtao Duan
Earth Syst. Sci. Data, 14, 79–94, https://doi.org/10.5194/essd-14-79-2022, https://doi.org/10.5194/essd-14-79-2022, 2022
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During 1984–2018, lakes in the Tibetan-Qinghai Plateau had the clearest water (mean 3.32 ± 0.38 m), while those in the northeastern region had the lowest Secchi disk depth (SDD) (mean 0.60 ± 0.09 m). Among the 10 814 lakes with > 10 years of SDD results, 55.4 % and 3.5 % experienced significantly increasing and decreasing trends of SDD, respectively. With the exception of Inner Mongolia–Xinjiang, more than half of lakes in all the other regions exhibited a significant trend of increasing SDD.
Dalei Hao, Gautam Bisht, Yu Gu, Wei-Liang Lee, Kuo-Nan Liou, and L. Ruby Leung
Geosci. Model Dev., 14, 6273–6289, https://doi.org/10.5194/gmd-14-6273-2021, https://doi.org/10.5194/gmd-14-6273-2021, 2021
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Topography exerts significant influence on the incoming solar radiation at the land surface. This study incorporated a well-validated sub-grid topographic parameterization in E3SM land model (ELM) version 1.0. The results demonstrate that sub-grid topography has non-negligible effects on surface energy budget, snow cover, and surface temperature over the Tibetan Plateau and that the ELM simulations are sensitive to season, elevation, and spatial scale.
Yaoping Wang, Jiafu Mao, Mingzhou Jin, Forrest M. Hoffman, Xiaoying Shi, Stan D. Wullschleger, and Yongjiu Dai
Earth Syst. Sci. Data, 13, 4385–4405, https://doi.org/10.5194/essd-13-4385-2021, https://doi.org/10.5194/essd-13-4385-2021, 2021
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We developed seven global soil moisture datasets (1970–2016, monthly, half-degree, and multilayer) by merging a wide range of data sources, including in situ and satellite observations, reanalysis, offline land surface model simulations, and Earth system model simulations. Given the great value of long-term, multilayer, gap-free soil moisture products to climate research and applications, we believe this paper and the presented datasets would be of interest to many different communities.
Daniel M. Ricciuto, Xiaojuan Yang, Dali Wang, and Peter E. Thornton
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-163, https://doi.org/10.5194/bg-2021-163, 2021
Publication in BG not foreseen
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This paper uses a novel approach to quantify the impacts of the choice of decomposition model on carbon and nitrogen cycling. We compare the models to experimental data that examined litter decomposition over five different biomes. Despite widely differing assumptions, the models produce similar patterns of decomposition when nutrients are limiting. This differs from past analyses that did not consider the impacts of changing environmental conditions or nutrients.
Debjani Sihi, Xiaofeng Xu, Mónica Salazar Ortiz, Christine S. O'Connell, Whendee L. Silver, Carla López-Lloreda, Julia M. Brenner, Ryan K. Quinn, Jana R. Phillips, Brent D. Newman, and Melanie A. Mayes
Biogeosciences, 18, 1769–1786, https://doi.org/10.5194/bg-18-1769-2021, https://doi.org/10.5194/bg-18-1769-2021, 2021
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Humid tropical soils are important sources and sinks of methane. We used model simulation to understand how different kinds of microbes and observed soil moisture and oxygen dynamics contribute to production and consumption of methane along a wet tropical hillslope during normal and drought conditions. Drought alters the diffusion of oxygen and microbial substrates into and out of soil microsites, resulting in enhanced methane release from the entire hillslope during drought recovery.
Xiaoying Shi, Daniel M. Ricciuto, Peter E. Thornton, Xiaofeng Xu, Fengming Yuan, Richard J. Norby, Anthony P. Walker, Jeffrey M. Warren, Jiafu Mao, Paul J. Hanson, Lin Meng, David Weston, and Natalie A. Griffiths
Biogeosciences, 18, 467–486, https://doi.org/10.5194/bg-18-467-2021, https://doi.org/10.5194/bg-18-467-2021, 2021
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The Sphagnum mosses are the important species of a wetland ecosystem. To better represent the peatland ecosystem, we introduced the moss species to the land model component (ELM) of the Energy Exascale Earth System Model (E3SM) by developing water content dynamics and nonvascular photosynthetic processes for moss. We tested the model against field observations and used the model to make projections of the site's carbon cycle under warming and atmospheric CO2 concentration scenarios.
George C. Hurtt, Louise Chini, Ritvik Sahajpal, Steve Frolking, Benjamin L. Bodirsky, Katherine Calvin, Jonathan C. Doelman, Justin Fisk, Shinichiro Fujimori, Kees Klein Goldewijk, Tomoko Hasegawa, Peter Havlik, Andreas Heinimann, Florian Humpenöder, Johan Jungclaus, Jed O. Kaplan, Jennifer Kennedy, Tamás Krisztin, David Lawrence, Peter Lawrence, Lei Ma, Ole Mertz, Julia Pongratz, Alexander Popp, Benjamin Poulter, Keywan Riahi, Elena Shevliakova, Elke Stehfest, Peter Thornton, Francesco N. Tubiello, Detlef P. van Vuuren, and Xin Zhang
Geosci. Model Dev., 13, 5425–5464, https://doi.org/10.5194/gmd-13-5425-2020, https://doi.org/10.5194/gmd-13-5425-2020, 2020
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To estimate the effects of human land use activities on the carbon–climate system, a new set of global gridded land use forcing datasets was developed to link historical land use data to eight future scenarios in a standard format required by climate models. This new generation of land use harmonization (LUH2) includes updated inputs, higher spatial resolution, more detailed land use transitions, and the addition of important agricultural management layers; it will be used for CMIP6 simulations.
Ahmad Jan, Ethan T. Coon, and Scott L. Painter
Geosci. Model Dev., 13, 2259–2276, https://doi.org/10.5194/gmd-13-2259-2020, https://doi.org/10.5194/gmd-13-2259-2020, 2020
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Computer simulations are important tools for understanding the response of Arctic permafrost to a warming climate. To build confidence in an emerging class of permafrost simulators, we evaluated the Advanced Terrestrial Simulator against field observations from a frozen tundra site near Utqiaġvik (formerly Barrow), Alaska. The 3-year simulations agree well with observations of snow depth, summer water table, soil temperature at multiple locations, and spatially averaged evaporation.
Jianqiu Zheng, Peter E. Thornton, Scott L. Painter, Baohua Gu, Stan D. Wullschleger, and David E. Graham
Biogeosciences, 16, 663–680, https://doi.org/10.5194/bg-16-663-2019, https://doi.org/10.5194/bg-16-663-2019, 2019
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Arctic warming exposes soil carbon to increased degradation, increasing CO2 and CH4 emissions. Models underrepresent anaerobic decomposition that predominates wet soils. We simulated microbial growth, pH regulation, and anaerobic carbon decomposition in a new model, parameterized and validated with prior soil incubation data. The model accurately simulated CO2 production and strong influences of water content, pH, methanogen biomass, and competing electron acceptors on CH4 production.
Corinne Le Quéré, Robbie M. Andrew, Pierre Friedlingstein, Stephen Sitch, Judith Hauck, Julia Pongratz, Penelope A. Pickers, Jan Ivar Korsbakken, Glen P. Peters, Josep G. Canadell, Almut Arneth, Vivek K. Arora, Leticia Barbero, Ana Bastos, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Philippe Ciais, Scott C. Doney, Thanos Gkritzalis, Daniel S. Goll, Ian Harris, Vanessa Haverd, Forrest M. Hoffman, Mario Hoppema, Richard A. Houghton, George Hurtt, Tatiana Ilyina, Atul K. Jain, Truls Johannessen, Chris D. Jones, Etsushi Kato, Ralph F. Keeling, Kees Klein Goldewijk, Peter Landschützer, Nathalie Lefèvre, Sebastian Lienert, Zhu Liu, Danica Lombardozzi, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-ichiro Nakaoka, Craig Neill, Are Olsen, Tsueno Ono, Prabir Patra, Anna Peregon, Wouter Peters, Philippe Peylin, Benjamin Pfeil, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Matthias Rocher, Christian Rödenbeck, Ute Schuster, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Tobias Steinhoff, Adrienne Sutton, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Ingrid T. van der Laan-Luijkx, Guido R. van der Werf, Nicolas Viovy, Anthony P. Walker, Andrew J. Wiltshire, Rebecca Wright, Sönke Zaehle, and Bo Zheng
Earth Syst. Sci. Data, 10, 2141–2194, https://doi.org/10.5194/essd-10-2141-2018, https://doi.org/10.5194/essd-10-2141-2018, 2018
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The Global Carbon Budget 2018 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Gautam Bisht, William J. Riley, Glenn E. Hammond, and David M. Lorenzetti
Geosci. Model Dev., 11, 4085–4102, https://doi.org/10.5194/gmd-11-4085-2018, https://doi.org/10.5194/gmd-11-4085-2018, 2018
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Most existing global land surface models used to study impacts of climate change on water resources routinely use different models for near-surface unsaturated soil and the deeper groundwater table. We developed a model that uses a unified treatment of soil hydrologic processes throughout the entire soil column. Using a calibrated drainage parameter, the new model is able to correctly predict deep water table depth as reported in an observationally constrained global dataset.
Zhiwei Xu, Guirui Yu, Xinyu Zhang, Nianpeng He, Qiufeng Wang, Shengzhong Wang, Xiaofeng Xu, Ruili Wang, and Ning Zhao
Biogeosciences, 15, 1217–1228, https://doi.org/10.5194/bg-15-1217-2018, https://doi.org/10.5194/bg-15-1217-2018, 2018
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Forest types with specific soil conditions supported the development of distinct soil microbial communities with variable functions. Our results indicate that the main controls on soil microbes and functions vary across forest ecosystems in different climatic zones. This information will add value to the modeling of microbial processes and will contribute to carbon cycling on a large scale.
Gautam Bisht, William J. Riley, Haruko M. Wainwright, Baptiste Dafflon, Fengming Yuan, and Vladimir E. Romanovsky
Geosci. Model Dev., 11, 61–76, https://doi.org/10.5194/gmd-11-61-2018, https://doi.org/10.5194/gmd-11-61-2018, 2018
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The land model integrated into the Energy Exascale Earth System Model was extended to include snow redistribution (SR) and lateral subsurface hydrologic and thermal processes. Simulation results at a polygonal tundra site near Barrow, Alaska, showed that inclusion of SR resulted in a better agreement with observations. Excluding lateral subsurface processes had a small impact on mean states but caused a large overestimation of spatial variability in soil moisture and temperature.
Gautam Bisht, Maoyi Huang, Tian Zhou, Xingyuan Chen, Heng Dai, Glenn E. Hammond, William J. Riley, Janelle L. Downs, Ying Liu, and John M. Zachara
Geosci. Model Dev., 10, 4539–4562, https://doi.org/10.5194/gmd-10-4539-2017, https://doi.org/10.5194/gmd-10-4539-2017, 2017
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A fully coupled three-dimensional surface and subsurface land model, CP v1.0, was developed to simulate three-way interactions among river water, groundwater, and land surface processes. The coupled model can be used for improving mechanistic understanding of ecosystem functioning and biogeochemical cycling along river corridors under historical and future hydroclimatic changes. The dataset presented in this study can also serve as a good benchmarking case for testing other integrated models.
Henrique F. Duarte, Brett M. Raczka, Daniel M. Ricciuto, John C. Lin, Charles D. Koven, Peter E. Thornton, David R. Bowling, Chun-Ta Lai, Kenneth J. Bible, and James R. Ehleringer
Biogeosciences, 14, 4315–4340, https://doi.org/10.5194/bg-14-4315-2017, https://doi.org/10.5194/bg-14-4315-2017, 2017
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We evaluate the Community Land Model (CLM4.5) against observations at an old-growth coniferous forest site that is subjected to water stress each summer. We found that, after calibration, CLM was able to reasonably simulate the observed fluxes of energy and carbon, carbon stocks, carbon isotope ratios, and ecosystem response to water stress. This study demonstrates that carbon isotopes can expose structural weaknesses in CLM and provide a key constraint that may guide future model development.
Yiqi Luo, Zheng Shi, Xingjie Lu, Jianyang Xia, Junyi Liang, Jiang Jiang, Ying Wang, Matthew J. Smith, Lifen Jiang, Anders Ahlström, Benito Chen, Oleksandra Hararuk, Alan Hastings, Forrest Hoffman, Belinda Medlyn, Shuli Niu, Martin Rasmussen, Katherine Todd-Brown, and Ying-Ping Wang
Biogeosciences, 14, 145–161, https://doi.org/10.5194/bg-14-145-2017, https://doi.org/10.5194/bg-14-145-2017, 2017
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Climate change is strongly regulated by land carbon cycle. However, we lack the ability to predict future land carbon sequestration. Here, we develop a novel framework for understanding what determines the direction and rate of future change in land carbon storage. The framework offers a suite of new approaches to revolutionize land carbon model evaluation and improvement.
Dóra Hidy, Zoltán Barcza, Hrvoje Marjanović, Maša Zorana Ostrogović Sever, Laura Dobor, Györgyi Gelybó, Nándor Fodor, Krisztina Pintér, Galina Churkina, Steven Running, Peter Thornton, Gianni Bellocchi, László Haszpra, Ferenc Horváth, Andrew Suyker, and Zoltán Nagy
Geosci. Model Dev., 9, 4405–4437, https://doi.org/10.5194/gmd-9-4405-2016, https://doi.org/10.5194/gmd-9-4405-2016, 2016
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This paper provides detailed documentation on the changes implemented in the widely used biogeochemical model Biome-BGC. The version containing all improvements is referred to as Biome-BGCMuSo (Biome-BGC with multilayer soil module). Case studies on forest, cropland, and grassland are presented to demonstrate the effect of developments on the simulation. By using Biome-BGCMuSo, it became possible to analyze the effects of different environmental conditions and human activities on the ecosystems.
Jitendra Kumar, Nathan Collier, Gautam Bisht, Richard T. Mills, Peter E. Thornton, Colleen M. Iversen, and Vladimir Romanovsky
The Cryosphere, 10, 2241–2274, https://doi.org/10.5194/tc-10-2241-2016, https://doi.org/10.5194/tc-10-2241-2016, 2016
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Microtopography of the low-gradient polygonal tundra plays a critical role in these ecosystem; however, patterns and drivers are poorly understood. A modeling-based approach was developed in this study to characterize and represent the permafrost soils in the model and simulate the thermal dynamics using a mechanistic high-resolution model. Results shows the ability of the model to simulate the patterns and variability of thermal regimes and improve our understanding of polygonal tundra.
Brett Raczka, Henrique F. Duarte, Charles D. Koven, Daniel Ricciuto, Peter E. Thornton, John C. Lin, and David R. Bowling
Biogeosciences, 13, 5183–5204, https://doi.org/10.5194/bg-13-5183-2016, https://doi.org/10.5194/bg-13-5183-2016, 2016
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We use carbon isotopes of CO2 to improve the performance of a land surface model, a component with earth system climate models. We found that isotope observations can provide important information related to the exchange of carbon and water from vegetation driven by environmental stress from low atmospheric moisture and nitrogen limitation. It follows that isotopes have a unique potential to improve model performance and provide insight into land surface model development.
Guoping Tang, Jianqiu Zheng, Xiaofeng Xu, Ziming Yang, David E. Graham, Baohua Gu, Scott L. Painter, and Peter E. Thornton
Biogeosciences, 13, 5021–5041, https://doi.org/10.5194/bg-13-5021-2016, https://doi.org/10.5194/bg-13-5021-2016, 2016
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We extend the Community Land Model coupled with carbon and nitrogen (CLM-CN) decomposition cascade to include simple organic substrate turnover, fermentation, Fe(III) reduction, and methanogenesis reactions, and assess the efficacy of various temperature and pH response functions. Incorporating the Windermere Humic Aqueous Model (WHAM) describes the observed pH evolution. Fe reduction can increase pH toward neutral pH to facilitate methanogenesis.
Chris D. Jones, Vivek Arora, Pierre Friedlingstein, Laurent Bopp, Victor Brovkin, John Dunne, Heather Graven, Forrest Hoffman, Tatiana Ilyina, Jasmin G. John, Martin Jung, Michio Kawamiya, Charlie Koven, Julia Pongratz, Thomas Raddatz, James T. Randerson, and Sönke Zaehle
Geosci. Model Dev., 9, 2853–2880, https://doi.org/10.5194/gmd-9-2853-2016, https://doi.org/10.5194/gmd-9-2853-2016, 2016
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How the carbon cycle interacts with climate will affect future climate change and how society plans emissions reductions to achieve climate targets. The Coupled Climate Carbon Cycle Model Intercomparison Project (C4MIP) is an endorsed activity of CMIP6 and aims to quantify these interactions and feedbacks in state-of-the-art climate models. This paper lays out the experimental protocol for modelling groups to follow to contribute to C4MIP. It is a contribution to the CMIP6 GMD Special Issue.
Jitendra Kumar, Forrest M. Hoffman, William W. Hargrove, and Nathan Collier
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2016-36, https://doi.org/10.5194/essd-2016-36, 2016
Preprint withdrawn
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The Eddy-covariance measurements from global network of flux sites help understand the emergent ecosystem properties. This study presents an approach to assess the representativeness of the observations at the flux sites and upscale the measured fluxes to develop time series of high resolution global gridded data set. Upscaled gross primary productivity data sets captures the heterogeneity of terrestrial ecosystem and reflects the seasonal and interannual variability observed at flux sites.
Xiaofeng Xu, Fengming Yuan, Paul J. Hanson, Stan D. Wullschleger, Peter E. Thornton, William J. Riley, Xia Song, David E. Graham, Changchun Song, and Hanqin Tian
Biogeosciences, 13, 3735–3755, https://doi.org/10.5194/bg-13-3735-2016, https://doi.org/10.5194/bg-13-3735-2016, 2016
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Accurately projecting future climate change requires a good methane modeling. However, how good the current models are and what are the key improvements needed remain unclear. This paper reviews the 40 published methane models to characterize the strengths and weakness of current methane models and further lay out the roadmap for future model improvements.
Y. P. Wang, J. Jiang, B. Chen-Charpentier, F. B. Agusto, A. Hastings, F. Hoffman, M. Rasmussen, M. J. Smith, K. Todd-Brown, Y. Wang, X. Xu, and Y. Q. Luo
Biogeosciences, 13, 887–902, https://doi.org/10.5194/bg-13-887-2016, https://doi.org/10.5194/bg-13-887-2016, 2016
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Comparing two nonlinear microbial models, we found that,
in response to warming, soil C decreases in one model but can increase or decrease in the other model, and sensitivity of priming response to carbon input increases with soil T in one model but decreases in the other model
Significance: these differences in the responses can be used to discern which model is more realistic, which will improve our understanding of the significance of soil microbial processes in the terrestrial C cycle.
D. R. Harp, A. L. Atchley, S. L. Painter, E. T. Coon, C. J. Wilson, V. E. Romanovsky, and J. C. Rowland
The Cryosphere, 10, 341–358, https://doi.org/10.5194/tc-10-341-2016, https://doi.org/10.5194/tc-10-341-2016, 2016
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This paper investigates the uncertainty associated with permafrost thaw projections at an intensively monitored site. Permafrost thaw projections are simulated using a thermal hydrology model forced by a worst-case carbon emission scenario. The uncertainties associated with active layer depth, saturation state, thermal regime, and thaw duration are quantified and compared with the effects of climate model uncertainty on permafrost thaw projections.
J. Mao, D. M. Ricciuto, P. E. Thornton, J. M. Warren, A. W. King, X. Shi, C. M. Iversen, and R. J. Norby
Biogeosciences, 13, 641–657, https://doi.org/10.5194/bg-13-641-2016, https://doi.org/10.5194/bg-13-641-2016, 2016
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The aim of this study is to implement, calibrate and evaluate the CLM4 against carbon and hydrology observations from a shading and labeling experiment in a stand of young loblolly pines. We found a combination of parameters measured on-site and calibration targeting biomass, transpiration, and 13C discrimination gave good agreement with pretreatment measurements. We also used observations from the experiment to develop a conceptual model of short-term photosynthate storage and transport.
X. Shi, P. E. Thornton, D. M. Ricciuto, P. J. Hanson, J. Mao, S. D. Sebestyen, N. A. Griffiths, and G. Bisht
Biogeosciences, 12, 6463–6477, https://doi.org/10.5194/bg-12-6463-2015, https://doi.org/10.5194/bg-12-6463-2015, 2015
A. L. Atchley, S. L. Painter, D. R. Harp, E. T. Coon, C. J. Wilson, A. K. Liljedahl, and V. E. Romanovsky
Geosci. Model Dev., 8, 2701–2722, https://doi.org/10.5194/gmd-8-2701-2015, https://doi.org/10.5194/gmd-8-2701-2015, 2015
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Development and calibration of a process-rich model representation of thaw-depth dynamics in Arctic tundra is presented. Improved understanding of polygonal tundra thermal hydrology processes, of thermal conduction, surface and subsurface saturation and snowpack dynamics is gained by using measured field data to calibrate and refine model structure. The refined model is then used identify future data needs and observational studies.
W. D. Collins, A. P. Craig, J. E. Truesdale, A. V. Di Vittorio, A. D. Jones, B. Bond-Lamberty, K. V. Calvin, J. A. Edmonds, S. H. Kim, A. M. Thomson, P. Patel, Y. Zhou, J. Mao, X. Shi, P. E. Thornton, L. P. Chini, and G. C. Hurtt
Geosci. Model Dev., 8, 2203–2219, https://doi.org/10.5194/gmd-8-2203-2015, https://doi.org/10.5194/gmd-8-2203-2015, 2015
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The integrated Earth system model (iESM) has been developed as a
new tool for projecting the joint human-climate system. The
iESM is based upon coupling an integrated assessment model (IAM)
and an Earth system model (ESM) into a common modeling
infrastructure. By introducing heretofore-omitted
feedbacks between natural and societal drivers in iESM, we can improve
scientific understanding of the human-Earth system
dynamics.
C. Safta, D. M. Ricciuto, K. Sargsyan, B. Debusschere, H. N. Najm, M. Williams, and P. E. Thornton
Geosci. Model Dev., 8, 1899–1918, https://doi.org/10.5194/gmd-8-1899-2015, https://doi.org/10.5194/gmd-8-1899-2015, 2015
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In this paper we propose a probabilistic framework for an uncertainty quantification study of a carbon cycle model and focus on the comparison between steady-state and transient
simulation setups. We study model parameters via global sensitivity analysis and employ a Bayesian approach to calibrate these parameters using NEE observations at the Harvard Forest site. The calibration results are then used to assess the predictive skill of the model via posterior predictive checks.
A. V. Di Vittorio, L. P. Chini, B. Bond-Lamberty, J. Mao, X. Shi, J. Truesdale, A. Craig, K. Calvin, A. Jones, W. D. Collins, J. Edmonds, G. C. Hurtt, P. Thornton, and A. Thomson
Biogeosciences, 11, 6435–6450, https://doi.org/10.5194/bg-11-6435-2014, https://doi.org/10.5194/bg-11-6435-2014, 2014
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Economic models provide scenarios of land use and greenhouse gas emissions to earth system models to project global change. We found, and partially addressed, inconsistencies in land cover between an economic and an earth system model that effectively alter a prescribed scenario, causing significant differences in projected terrestrial carbon and atmospheric CO2 between prescribed and altered scenarios. We outline a solution to this current problem in scenario-based global change projections.
G. Bisht and W. J. Riley
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-11-12833-2014, https://doi.org/10.5194/hessd-11-12833-2014, 2014
Revised manuscript has not been submitted
B. Bond-Lamberty, K. Calvin, A. D. Jones, J. Mao, P. Patel, X. Y. Shi, A. Thomson, P. Thornton, and Y. Zhou
Geosci. Model Dev., 7, 2545–2555, https://doi.org/10.5194/gmd-7-2545-2014, https://doi.org/10.5194/gmd-7-2545-2014, 2014
S. Karra, S. L. Painter, and P. C. Lichtner
The Cryosphere, 8, 1935–1950, https://doi.org/10.5194/tc-8-1935-2014, https://doi.org/10.5194/tc-8-1935-2014, 2014
G. S. H. Pau, G. Bisht, and W. J. Riley
Geosci. Model Dev., 7, 2091–2105, https://doi.org/10.5194/gmd-7-2091-2014, https://doi.org/10.5194/gmd-7-2091-2014, 2014
Y. P. Wang, B. C. Chen, W. R. Wieder, M. Leite, B. E. Medlyn, M. Rasmussen, M. J. Smith, F. B. Agusto, F. Hoffman, and Y. Q. Luo
Biogeosciences, 11, 1817–1831, https://doi.org/10.5194/bg-11-1817-2014, https://doi.org/10.5194/bg-11-1817-2014, 2014
X. Yang, P. E. Thornton, D. M. Ricciuto, and W. M. Post
Biogeosciences, 11, 1667–1681, https://doi.org/10.5194/bg-11-1667-2014, https://doi.org/10.5194/bg-11-1667-2014, 2014
X. Yang, W. M. Post, P. E. Thornton, and A. Jain
Biogeosciences, 10, 2525–2537, https://doi.org/10.5194/bg-10-2525-2013, https://doi.org/10.5194/bg-10-2525-2013, 2013
K. E. O. Todd-Brown, J. T. Randerson, W. M. Post, F. M. Hoffman, C. Tarnocai, E. A. G. Schuur, and S. D. Allison
Biogeosciences, 10, 1717–1736, https://doi.org/10.5194/bg-10-1717-2013, https://doi.org/10.5194/bg-10-1717-2013, 2013
T. W. Hudiburg, B. E. Law, and P. E. Thornton
Biogeosciences, 10, 453–470, https://doi.org/10.5194/bg-10-453-2013, https://doi.org/10.5194/bg-10-453-2013, 2013
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The DOE E3SM version 2.1: overview and assessment of the impacts of parameterized ocean submesoscales
WRF-ELM v1.0: a regional climate model to study land–atmosphere interactions over heterogeneous land use regions
Modeling commercial-scale CO2 storage in the gas hydrate stability zone with PFLOTRAN v6.0
DiuSST: a conceptual model of diurnal warm layers for idealized atmospheric simulations with interactive sea surface temperature
High-Resolution Model Intercomparison Project phase 2 (HighResMIP2) towards CMIP7
T&C-CROP: representing mechanistic crop growth with a terrestrial biosphere model (T&C, v1.5) – model formulation and validation
An updated non-intrusive, multi-scale, and flexible coupling interface in WRF 4.6.0
Monitoring and benchmarking Earth system model simulations with ESMValTool v2.12.0
The Earth Science Box Modeling Toolkit (ESBMTK 0.14.0.11): a Python library for research and teaching
CropSuite v1.0 – a comprehensive open-source crop suitability model considering climate variability for climate impact assessment
ICON ComIn – the ICON Community Interface (ComIn version 0.1.0, with ICON version 2024.01-01)
Using feature importance as an exploratory data analysis tool on Earth system models
A new metrics framework for quantifying and intercomparing atmospheric rivers in observations, reanalyses, and climate models
The real challenges for climate and weather modelling on its way to sustained exascale performance: a case study using ICON (v2.6.6)
COSP-RTTOV-1.0: Flexible radiation diagnostics to enable new science applications in model evaluation, climate change detection, and satellite mission design
Impact of spatial resolution on CMIP6-driven Mediterranean climate simulations: a focus on precipitation distribution over Italy
Improving the representation of major Indian crops in the Community Land Model version 5.0 (CLM5) using site-scale crop data
Evaluation of CORDEX ERA5-forced NARCliM2.0 regional climate models over Australia using the Weather Research and Forecasting (WRF) model version 4.1.2
Design, evaluation, and future projections of the NARCliM2.0 CORDEX-CMIP6 Australasia regional climate ensemble
The Detection and Attribution Model Intercomparison Project (DAMIP v2.0) contribution to CMIP7
Statistical summaries for streamed data from climate simulations: One-pass algorithms (v0.6.2)
Amending the algorithm of aerosol–radiation interactions in WRF-Chem (v4.4)
The very-high-resolution configuration of the EC-Earth global model for HighResMIP
GOSI9: UK Global Ocean and Sea Ice configurations
FACA v1 – Fully Automated Co-Alignment of UAV Point Clouds
Decomposition of skill scores for conditional verification: impact of Atlantic Multidecadal Oscillation phases on the predictability of decadal temperature forecasts
Virtual Integration of Satellite and In-situ Observation Networks (VISION) v1.0: In-Situ Observations Simulator (ISO_simulator)
Climate model downscaling in central Asia: a dynamical and a neural network approach
Yan Bo, Hao Liang, Tao Li, and Feng Zhou
Geosci. Model Dev., 18, 3799–3817, https://doi.org/10.5194/gmd-18-3799-2025, https://doi.org/10.5194/gmd-18-3799-2025, 2025
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This study proposed an advancing framework for modeling regional rice production, water use, and greenhouse gas emissions. The framework integrated a process-based soil-crop model with vital physiological effects, a novel model upscaling method, and the NSGA-II multi-objective optimization algorithm at a parallel computing platform. The framework provides a valuable tool for multi-objective optimization of rice irrigation schemes at a large scale.
Carolina A. Bieri, Francina Dominguez, Gonzalo Miguez-Macho, and Ying Fan
Geosci. Model Dev., 18, 3755–3779, https://doi.org/10.5194/gmd-18-3755-2025, https://doi.org/10.5194/gmd-18-3755-2025, 2025
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Access to deep moisture below the Earth's surface is important for vegetation in areas of the Amazon where there is little precipitation for part of the year. Most existing numerical models of the Earth system do not adequately capture where and when deep root water uptake occurs. We address this by adding deep soil layers and a root water uptake feature to an existing model. Out modifications lead to increased dry-month transpiration and improved simulation of the annual transpiration cycle.
Sergi Palomas, Mario C. Acosta, Gladys Utrera, and Etienne Tourigny
Geosci. Model Dev., 18, 3661–3679, https://doi.org/10.5194/gmd-18-3661-2025, https://doi.org/10.5194/gmd-18-3661-2025, 2025
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We present an automatic tool that optimizes resource distribution in coupled climate models, enhancing speed and reducing computational costs without requiring expert knowledge. Users can set energy/time criteria or limit resource usage. Tested on various European Community Earth System Model (EC-Earth) configurations and high-performance computing (HPC) platforms, it achieved up to 34 % faster simulations with fewer resources.
Maria Lucia Ferreira Barbosa, Douglas I. Kelley, Chantelle A. Burton, Igor J. M. Ferreira, Renata Moura da Veiga, Anna Bradley, Paulo Guilherme Molin, and Liana O. Anderson
Geosci. Model Dev., 18, 3533–3557, https://doi.org/10.5194/gmd-18-3533-2025, https://doi.org/10.5194/gmd-18-3533-2025, 2025
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As fire seasons in Brazil become increasingly severe, confidently understanding the factors driving fires is more critical than ever. To address this challenge, we developed FLAME (Fire Landscape Analysis using Maximum Entropy), a new model designed to predict fires and to analyse the spatial influence of both environmental and human factors while accounting for uncertainties. By adapting the model to different regions, we can enhance fire management strategies, making FLAME a powerful tool for protecting landscapes in Brazil and beyond.
Victor Couplet, Marina Martínez Montero, and Michel Crucifix
Geosci. Model Dev., 18, 3081–3129, https://doi.org/10.5194/gmd-18-3081-2025, https://doi.org/10.5194/gmd-18-3081-2025, 2025
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We present SURFER v3.0, a simple climate model designed to estimate the impact of CO2 and CH4 emissions on global temperatures, sea levels, and ocean pH. We added new carbon cycle processes and calibrated the model to observations and results from more complex models, enabling use over timescales ranging from decades to millions of years. SURFER v3.0 is fast, transparent, and easy to use, making it an ideal tool for policy assessments and suitable for educational purposes.
Yong-He Liu and Zong-Liang Yang
Geosci. Model Dev., 18, 3157–3174, https://doi.org/10.5194/gmd-18-3157-2025, https://doi.org/10.5194/gmd-18-3157-2025, 2025
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NMH-CS 3.0 is a C#-based ecohydrological model reconstructed from the WRF-Hydro/Noah-MP model by translating the Fortran code of WRF-Hydro 3.0 and integrating a parallel river routing module. It enables efficient execution on multi-core personal computers. Simulations in the Yellow River basin demonstrate its consistency with WRF-Hydro outputs, providing a reliable alternative to the original Noah-MP model.
Conor T. Doherty, Weile Wang, Hirofumi Hashimoto, and Ian G. Brosnan
Geosci. Model Dev., 18, 3003–3016, https://doi.org/10.5194/gmd-18-3003-2025, https://doi.org/10.5194/gmd-18-3003-2025, 2025
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We present, analyze, and validate a methodology for quantifying uncertainty in gridded meteorological data products produced by spatial interpolation. In a validation case study using daily maximum near-surface air temperature (Tmax), the method works well and produces predictive distributions with closely matching theoretical versus actual coverage levels. Application of the method reveals that the magnitude of uncertainty in interpolated Tmax varies significantly in both space and time.
Martin Juckes, Karl E. Taylor, Fabrizio Antonio, David Brayshaw, Carlo Buontempo, Jian Cao, Paul J. Durack, Michio Kawamiya, Hyungjun Kim, Tomas Lovato, Chloe Mackallah, Matthew Mizielinski, Alessandra Nuzzo, Martina Stockhause, Daniele Visioni, Jeremy Walton, Briony Turner, Eleanor O'Rourke, and Beth Dingley
Geosci. Model Dev., 18, 2639–2663, https://doi.org/10.5194/gmd-18-2639-2025, https://doi.org/10.5194/gmd-18-2639-2025, 2025
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The Baseline Climate Variables for Earth System Modelling (ESM-BCVs) are defined as a list of 135 variables which have high utility for the evaluation and exploitation of climate simulations. The list reflects the most frequently used variables from Earth system models based on an assessment of data publication and download records from the largest archive of global climate projects.
Yucheng Lin, Robert E. Kopp, Alexander Reedy, Matteo Turilli, Shantenu Jha, and Erica L. Ashe
Geosci. Model Dev., 18, 2609–2637, https://doi.org/10.5194/gmd-18-2609-2025, https://doi.org/10.5194/gmd-18-2609-2025, 2025
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PaleoSTeHM v1.0 is a state-of-the-art framework designed to reconstruct past environmental conditions using geological data. Built on modern machine learning techniques, it efficiently handles the sparse and noisy nature of paleo-records, allowing scientists to make accurate and scalable inferences about past environmental change. By using flexible statistical models, PaleoSTeHM separates different sources of uncertainty, improving the precision of historical climate reconstructions.
Ingo Richter, Ping Chang, Ping-Gin Chiu, Gokhan Danabasoglu, Takeshi Doi, Dietmar Dommenget, Guillaume Gastineau, Zoe E. Gillett, Aixue Hu, Takahito Kataoka, Noel S. Keenlyside, Fred Kucharski, Yuko M. Okumura, Wonsun Park, Malte F. Stuecker, Andréa S. Taschetto, Chunzai Wang, Stephen G. Yeager, and Sang-Wook Yeh
Geosci. Model Dev., 18, 2587–2608, https://doi.org/10.5194/gmd-18-2587-2025, https://doi.org/10.5194/gmd-18-2587-2025, 2025
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Tropical ocean basins influence each other through multiple pathways and mechanisms, referred to here as tropical basin interaction (TBI). Many researchers have examined TBI using comprehensive climate models but have obtained conflicting results. This may be partly due to differences in experiment protocols and partly due to systematic model errors. The Tropical Basin Interaction Model Intercomparison Project (TBIMIP) aims to address this problem by designing a set of TBI experiments that will be performed by multiple models.
Daniel F. J. Gunning, Kerim H. Nisancioglu, Emilie Capron, and Roderik S. W. van de Wal
Geosci. Model Dev., 18, 2479–2508, https://doi.org/10.5194/gmd-18-2479-2025, https://doi.org/10.5194/gmd-18-2479-2025, 2025
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This work documents the first results from ZEMBA: an energy balance model of the climate system. The model is a computationally efficient tool designed to study the response of climate to changes in the Earth's orbit. We demonstrate that ZEMBA reproduces many features of the Earth's climate for both the pre-industrial period and the Earth's most recent cold extreme – the Last Glacial Maximum. We intend to develop ZEMBA further and investigate the glacial cycles of the last 2.5 million years.
Pengfei Shi, L. Ruby Leung, and Bin Wang
Geosci. Model Dev., 18, 2443–2460, https://doi.org/10.5194/gmd-18-2443-2025, https://doi.org/10.5194/gmd-18-2443-2025, 2025
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Improving climate predictions has significant socio-economic impacts. In this study, we develop and apply a new weakly coupled ocean data assimilation (WCODA) system to a coupled climate model. The WCODA system improves simulations of ocean temperature and salinity across many global regions. This system is meant to advance our understanding of the ocean's role in climate predictability.
Liwen Wang, Qian Li, Qi Lv, Xuan Peng, and Wei You
Geosci. Model Dev., 18, 2427–2442, https://doi.org/10.5194/gmd-18-2427-2025, https://doi.org/10.5194/gmd-18-2427-2025, 2025
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Our research presents a novel deep learning approach called "TemDeep" for downscaling atmospheric variables at arbitrary time resolutions based on temporal coherence. Results show that our method can accurately recover evolution details superior to other methods, reaching 53.7 % in the restoration rate. Our findings are important for advancing weather forecasting models and enabling more precise and reliable predictions to support disaster preparedness, agriculture, and sustainable development.
Teo Price-Broncucia, Allison Baker, Dorit Hammerling, Michael Duda, and Rebecca Morrison
Geosci. Model Dev., 18, 2349–2372, https://doi.org/10.5194/gmd-18-2349-2025, https://doi.org/10.5194/gmd-18-2349-2025, 2025
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The ensemble consistency test (ECT) and its ultrafast variant (UF-ECT) have become powerful tools in the development community for the identification of unwanted changes in the Community Earth System Model (CESM). We develop a generalized setup framework to enable easy adoption of the ECT approach for other model developers and communities. This framework specifies test parameters to accurately characterize model variability and balance test sensitivity and computational cost.
Esteban Fernández Villanueva and Gary Shaffer
Geosci. Model Dev., 18, 2161–2192, https://doi.org/10.5194/gmd-18-2161-2025, https://doi.org/10.5194/gmd-18-2161-2025, 2025
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We describe, calibrate and test the Danish Center for Earth System Science (DCESS) II model, a new, broad, adaptable and fast Earth system model. DCESS II is designed for global simulations over timescales of years to millions of years using limited computer resources like a personal computer. With its flexibility and comprehensive treatment of the global carbon cycle, DCESS II is a useful, computationally friendly tool for simulations of past climates as well as for future Earth system projections.
Gang Tang, Zebedee Nicholls, Alexander Norton, Sönke Zaehle, and Malte Meinshausen
Geosci. Model Dev., 18, 2193–2230, https://doi.org/10.5194/gmd-18-2193-2025, https://doi.org/10.5194/gmd-18-2193-2025, 2025
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We studied carbon–nitrogen coupling in Earth system models by developing a global carbon–nitrogen cycle model (CNit v1.0) within the widely used emulator MAGICC. CNit effectively reproduced the global carbon–nitrogen cycle dynamics observed in complex models. Our results show persistent nitrogen limitations on plant growth (net primary production) from 1850 to 2100, suggesting that nitrogen deficiency may constrain future land carbon sequestration.
Ngoc Thi Nhu Do, Kengo Sudo, Akihiko Ito, Louisa K. Emmons, Vaishali Naik, Kostas Tsigaridis, Øyvind Seland, Gerd A. Folberth, and Douglas I. Kelley
Geosci. Model Dev., 18, 2079–2109, https://doi.org/10.5194/gmd-18-2079-2025, https://doi.org/10.5194/gmd-18-2079-2025, 2025
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Understanding historical isoprene emission changes is important for predicting future climate, but trends and their controlling factors remain uncertain. This study shows that long-term isoprene trends vary among Earth system models mainly due to partially incorporating CO2 effects and land cover changes rather than to climate. Future models that refine these factors’ effects on isoprene emissions, along with long-term observations, are essential for better understanding plant–climate interactions.
Gang Tang, Zebedee Nicholls, Chris Jones, Thomas Gasser, Alexander Norton, Tilo Ziehn, Alejandro Romero-Prieto, and Malte Meinshausen
Geosci. Model Dev., 18, 2111–2136, https://doi.org/10.5194/gmd-18-2111-2025, https://doi.org/10.5194/gmd-18-2111-2025, 2025
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We analyzed carbon and nitrogen mass conservation in data from various Earth system models. Our findings reveal significant discrepancies between flux and pool size data, where cumulative imbalances can reach hundreds of gigatons of carbon or nitrogen. These imbalances appear primarily due to missing or inconsistently reported fluxes – especially for land-use and fire emissions. To enhance data quality, we recommend that future climate data protocols address this issue at the reporting stage.
Florian Börgel, Sven Karsten, Karoline Rummel, and Ulf Gräwe
Geosci. Model Dev., 18, 2005–2019, https://doi.org/10.5194/gmd-18-2005-2025, https://doi.org/10.5194/gmd-18-2005-2025, 2025
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Forecasting river runoff, which is crucial for managing water resources and understanding climate impacts, can be challenging. This study introduces a new method using convolutional long short-term memory (ConvLSTM) networks, a machine learning model that processes spatial and temporal data. Focusing on the Baltic Sea region, our model uses weather data as input to predict daily river runoff for 97 rivers.
Tao Zhang, Cyril Morcrette, Meng Zhang, Wuyin Lin, Shaocheng Xie, Ye Liu, Kwinten Van Weverberg, and Joana Rodrigues
Geosci. Model Dev., 18, 1917–1928, https://doi.org/10.5194/gmd-18-1917-2025, https://doi.org/10.5194/gmd-18-1917-2025, 2025
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Earth system models (ESMs) struggle with the uncertainties associated with parameterizing subgrid physics. Machine learning (ML) algorithms offer a solution by learning the important relationships and features from high-resolution models. To incorporate ML parameterizations into ESMs, we develop a Fortran–Python interface that allows for calling Python functions within Fortran-based ESMs. Through two case studies, this interface demonstrates its feasibility, modularity, and effectiveness.
Kostas Tsigaridis, Andrew S. Ackerman, Igor Aleinov, Mark A. Chandler, Thomas L. Clune, Christopher M. Colose, Anthony D. Del Genio, Maxwell Kelley, Nancy Y. Kiang, Anthony Leboissetier, Jan P. Perlwitz, Reto A. Ruedy, Gary L. Russell, Linda E. Sohl, Michael J. Way, and Eric T. Wolf
EGUsphere, https://doi.org/10.5194/egusphere-2025-925, https://doi.org/10.5194/egusphere-2025-925, 2025
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We present the second generation of ROCKE-3D, a generalized 3-dimensional model for use in Solar System and exoplanetary simulations of rocky planet climates. We quantify how the different component choices affect model results, and discuss strengths and limitations of using each component, together with how one can select which component to use. ROCKE-3D is publicly available and tutorial sessions are available for the community, greatly facilitating its use by any interested group.
Camilla Mathison, Eleanor J. Burke, Gregory Munday, Chris D. Jones, Chris J. Smith, Norman J. Steinert, Andy J. Wiltshire, Chris Huntingford, Eszter Kovacs, Laila K. Gohar, Rebecca M. Varney, and Douglas McNeall
Geosci. Model Dev., 18, 1785–1808, https://doi.org/10.5194/gmd-18-1785-2025, https://doi.org/10.5194/gmd-18-1785-2025, 2025
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We present PRIME (Probabilistic Regional Impacts from Model patterns and Emissions), which is designed to take new emissions scenarios and rapidly provide regional impact information. PRIME allows large ensembles to be run on multi-centennial timescales, including the analysis of many important variables for impact assessments. Our evaluation shows that PRIME reproduces the climate response for known scenarios, providing confidence in using PRIME for novel scenarios.
Katherine M. Smith, Alice M. Barthel, LeAnn M. Conlon, Luke P. Van Roekel, Anthony Bartoletti, Jean-Christophe Golaz, Chengzhu Zhang, Carolyn Branecky Begeman, James J. Benedict, Gautam Bisht, Yan Feng, Walter Hannah, Bryce E. Harrop, Nicole Jeffery, Wuyin Lin, Po-Lun Ma, Mathew E. Maltrud, Mark R. Petersen, Balwinder Singh, Qi Tang, Teklu Tesfa, Jonathan D. Wolfe, Shaocheng Xie, Xue Zheng, Karthik Balaguru, Oluwayemi Garuba, Peter Gleckler, Aixue Hu, Jiwoo Lee, Ben Moore-Maley, and Ana C. Ordoñez
Geosci. Model Dev., 18, 1613–1633, https://doi.org/10.5194/gmd-18-1613-2025, https://doi.org/10.5194/gmd-18-1613-2025, 2025
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Version 2.1 of the U.S. Department of Energy's Energy Exascale Earth System Model (E3SM) adds the Fox-Kemper et al. (2011) mixed-layer eddy parameterization, which restratifies the ocean surface layer through an overturning streamfunction. Results include surface layer bias reduction in temperature, salinity, and sea ice extent in the North Atlantic; a small strengthening of the Atlantic meridional overturning circulation; and improvements to many atmospheric climatological variables.
Huilin Huang, Yun Qian, Gautam Bisht, Jiali Wang, Tirthankar Chakraborty, Dalei Hao, Jianfeng Li, Travis Thurber, Balwinder Singh, Zhao Yang, Ye Liu, Pengfei Xue, William J. Sacks, Ethan Coon, and Robert Hetland
Geosci. Model Dev., 18, 1427–1443, https://doi.org/10.5194/gmd-18-1427-2025, https://doi.org/10.5194/gmd-18-1427-2025, 2025
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We integrate the E3SM Land Model (ELM) with the WRF model through the Lightweight Infrastructure for Land Atmosphere Coupling (LILAC) Earth System Modeling Framework (ESMF). This framework includes a top-level driver, LILAC, for variable communication between WRF and ELM and ESMF caps for ELM initialization, execution, and finalization. The LILAC–ESMF framework maintains the integrity of the ELM's source code structure and facilitates the transfer of future ELM model developments to WRF-ELM.
Michael Nole, Jonah Bartrand, Fawz Naim, and Glenn Hammond
Geosci. Model Dev., 18, 1413–1425, https://doi.org/10.5194/gmd-18-1413-2025, https://doi.org/10.5194/gmd-18-1413-2025, 2025
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Safe carbon dioxide (CO2) storage is likely to be critical for mitigating some of the most severe effects of climate change. We present a simulation framework for modeling CO2 storage beneath the seafloor, where CO2 can form a solid. This can aid in permanent CO2 storage for long periods of time. Our models show what a commercial-scale CO2 injection would look like in a marine environment. We discuss what would need to be considered when designing a subsea CO2 injection.
Reyk Börner, Jan O. Haerter, and Romain Fiévet
Geosci. Model Dev., 18, 1333–1356, https://doi.org/10.5194/gmd-18-1333-2025, https://doi.org/10.5194/gmd-18-1333-2025, 2025
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The daily cycle of sea surface temperature (SST) impacts clouds above the ocean and could influence the clustering of thunderstorms linked to extreme rainfall and hurricanes. However, daily SST variability is often poorly represented in modeling studies of how clouds cluster. We present a simple, wind-responsive model of upper-ocean temperature for use in atmospheric simulations. Evaluating the model against observations, we show that it performs significantly better than common slab models.
Malcolm J. Roberts, Kevin A. Reed, Qing Bao, Joseph J. Barsugli, Suzana J. Camargo, Louis-Philippe Caron, Ping Chang, Cheng-Ta Chen, Hannah M. Christensen, Gokhan Danabasoglu, Ivy Frenger, Neven S. Fučkar, Shabeh ul Hasson, Helene T. Hewitt, Huanping Huang, Daehyun Kim, Chihiro Kodama, Michael Lai, Lai-Yung Ruby Leung, Ryo Mizuta, Paulo Nobre, Pablo Ortega, Dominique Paquin, Christopher D. Roberts, Enrico Scoccimarro, Jon Seddon, Anne Marie Treguier, Chia-Ying Tu, Paul A. Ullrich, Pier Luigi Vidale, Michael F. Wehner, Colin M. Zarzycki, Bosong Zhang, Wei Zhang, and Ming Zhao
Geosci. Model Dev., 18, 1307–1332, https://doi.org/10.5194/gmd-18-1307-2025, https://doi.org/10.5194/gmd-18-1307-2025, 2025
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HighResMIP2 is a model intercomparison project focusing on high-resolution global climate models, that is, those with grid spacings of 25 km or less in the atmosphere and ocean, using simulations of decades to a century in length. We are proposing an update of our simulation protocol to make the models more applicable to key questions for climate variability and hazard in present-day and future projections and to build links with other communities to provide more robust climate information.
Jordi Buckley Paules, Simone Fatichi, Bonnie Warring, and Athanasios Paschalis
Geosci. Model Dev., 18, 1287–1305, https://doi.org/10.5194/gmd-18-1287-2025, https://doi.org/10.5194/gmd-18-1287-2025, 2025
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We present and validate enhancements to the process-based T&C model aimed at improving its representation of crop growth and management practices. The updated model, T&C-CROP, enables applications such as analysing the hydrological and carbon storage impacts of land use transitions (e.g. conversions between crops, forests, and pastures) and optimizing irrigation and fertilization strategies in response to climate change.
Sébastien Masson, Swen Jullien, Eric Maisonnave, David Gill, Guillaume Samson, Mathieu Le Corre, and Lionel Renault
Geosci. Model Dev., 18, 1241–1263, https://doi.org/10.5194/gmd-18-1241-2025, https://doi.org/10.5194/gmd-18-1241-2025, 2025
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This article details a new feature we implemented in the popular regional atmospheric model WRF. This feature allows for data exchange between WRF and any other model (e.g. an ocean model) using the coupling library Ocean–Atmosphere–Sea–Ice–Soil Model Coupling Toolkit (OASIS3-MCT). This coupling interface is designed to be non-intrusive, flexible and modular. It also offers the possibility of taking into account the nested zooms used in WRF or in the models with which it is coupled.
Axel Lauer, Lisa Bock, Birgit Hassler, Patrick Jöckel, Lukas Ruhe, and Manuel Schlund
Geosci. Model Dev., 18, 1169–1188, https://doi.org/10.5194/gmd-18-1169-2025, https://doi.org/10.5194/gmd-18-1169-2025, 2025
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Earth system models are important tools to improve our understanding of current climate and to project climate change. Thus, it is crucial to understand possible shortcomings in the models. New features of the ESMValTool software package allow one to compare and visualize a model's performance with respect to reproducing observations in the context of other climate models in an easy and user-friendly way. We aim to help model developers assess and monitor climate simulations more efficiently.
Ulrich G. Wortmann, Tina Tsan, Mahrukh Niazi, Irene A. Ma, Ruben Navasardyan, Magnus-Roland Marun, Bernardo S. Chede, Jingwen Zhong, and Morgan Wolfe
Geosci. Model Dev., 18, 1155–1167, https://doi.org/10.5194/gmd-18-1155-2025, https://doi.org/10.5194/gmd-18-1155-2025, 2025
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The Earth Science Box Modeling Toolkit (ESBMTK) is a user-friendly Python library that simplifies the creation of models to study earth system processes, such as the carbon cycle and ocean chemistry. It enhances learning by emphasizing concepts over programming and is accessible to students and researchers alike. By automating complex calculations and promoting code clarity, ESBMTK accelerates model development while improving reproducibility and the usability of scientific research.
Florian Zabel, Matthias Knüttel, and Benjamin Poschlod
Geosci. Model Dev., 18, 1067–1087, https://doi.org/10.5194/gmd-18-1067-2025, https://doi.org/10.5194/gmd-18-1067-2025, 2025
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CropSuite is a new open-source crop suitability model. It provides a GUI and a wide range of options, including a spatial downscaling of climate data. We apply CropSuite to 48 staple and opportunity crops at a 1 km spatial resolution in Africa. We find that climate variability significantly impacts suitable areas but also affects optimal sowing dates and multiple cropping potential. The results provide valuable information for climate impact assessments, adaptation, and land-use planning.
Kerstin Hartung, Bastian Kern, Nils-Arne Dreier, Jörn Geisbüsch, Mahnoosh Haghighatnasab, Patrick Jöckel, Astrid Kerkweg, Wilton Jaciel Loch, Florian Prill, and Daniel Rieger
Geosci. Model Dev., 18, 1001–1015, https://doi.org/10.5194/gmd-18-1001-2025, https://doi.org/10.5194/gmd-18-1001-2025, 2025
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The ICOsahedral Non-hydrostatic (ICON) model system Community Interface (ComIn) library supports connecting third-party modules to the ICON model. Third-party modules can range from simple diagnostic Python scripts to full chemistry models. ComIn offers a low barrier for code extensions to ICON, provides multi-language support (Fortran, C/C++, and Python), and reduces the migration effort in response to new ICON releases. This paper presents the ComIn design principles and a range of use cases.
Daniel Ries, Katherine Goode, Kellie McClernon, and Benjamin Hillman
Geosci. Model Dev., 18, 1041–1065, https://doi.org/10.5194/gmd-18-1041-2025, https://doi.org/10.5194/gmd-18-1041-2025, 2025
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Machine learning has advanced research in the climate science domain, but its models are difficult to understand. In order to understand the impacts and consequences of climate interventions such as stratospheric aerosol injection, complex models are often necessary. We use a case study to illustrate how we can understand the inner workings of a complex model. We present this technique as an exploratory tool that can be used to quickly discover and assess relationships in complex climate data.
Bo Dong, Paul Ullrich, Jiwoo Lee, Peter Gleckler, Kristin Chang, and Travis A. O'Brien
Geosci. Model Dev., 18, 961–976, https://doi.org/10.5194/gmd-18-961-2025, https://doi.org/10.5194/gmd-18-961-2025, 2025
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A metrics package designed for easy analysis of atmospheric river (AR) characteristics and statistics is presented. The tool is efficient for diagnosing systematic AR bias in climate models and useful for evaluating new AR characteristics in model simulations. In climate models, landfalling AR precipitation shows dry biases globally, and AR tracks are farther poleward (equatorward) in the North and South Atlantic (South Pacific and Indian Ocean).
Panagiotis Adamidis, Erik Pfister, Hendryk Bockelmann, Dominik Zobel, Jens-Olaf Beismann, and Marek Jacob
Geosci. Model Dev., 18, 905–919, https://doi.org/10.5194/gmd-18-905-2025, https://doi.org/10.5194/gmd-18-905-2025, 2025
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In this paper, we investigated performance indicators of the climate model ICON (ICOsahedral Nonhydrostatic) on different compute architectures to answer the question of how to generate high-resolution climate simulations. Evidently, it is not enough to use more computing units of the conventionally used architectures; higher memory throughput is the most promising approach. More potential can be gained from single-node optimization rather than simply increasing the number of compute nodes.
Jonah K. Shaw, Dustin J. Swales, Sergio DeSouza-Machado, David D. Turner, Jennifer E. Kay, and David P. Schneider
EGUsphere, https://doi.org/10.5194/egusphere-2025-169, https://doi.org/10.5194/egusphere-2025-169, 2025
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Satellites have observed earth's emission of infrared radiation since the 1970s. Because infrared wavelengths interact with the atmosphere in distinct ways, these observations contain information about the earth and atmosphere. We present a tool that runs alongside global climate models and produces output that can be directly compared with satellite measurements of infrared radiation. We then use this tool for climate model evaluation, climate change detection, and satellite mission design.
Maria Vittoria Struglia, Alessandro Anav, Marta Antonelli, Sandro Calmanti, Franco Catalano, Alessandro Dell'Aquila, Emanuela Pichelli, and Giovanna Pisacane
EGUsphere, https://doi.org/10.5194/egusphere-2025-387, https://doi.org/10.5194/egusphere-2025-387, 2025
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We present the results of downscaling global climate projections for the Mediterranean and Italian regions aiming to produce high-resolution climate information for the assessment of climate change signals, focusing on extreme events. A general warming is foreseen by the end of century with a mean precipitation reduction accompanied, over Italian Peninsula, by a strong increase in the intensity of extreme precipitation events, particularly relevant for the high emissions scenario during autumn
Kangari Narender Reddy, Somnath Baidya Roy, Sam S. Rabin, Danica L. Lombardozzi, Gudimetla Venkateswara Varma, Ruchira Biswas, and Devavat Chiru Naik
Geosci. Model Dev., 18, 763–785, https://doi.org/10.5194/gmd-18-763-2025, https://doi.org/10.5194/gmd-18-763-2025, 2025
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The study aimed to improve the representation of wheat and rice in a land model for the Indian region. The modified model performed significantly better than the default model in simulating crop phenology, yield, and carbon, water, and energy fluxes compared to observations. The study highlights the need for global land models to use region-specific crop parameters for accurately simulating vegetation processes and land surface processes.
Giovanni Di Virgilio, Fei Ji, Eugene Tam, Jason P. Evans, Jatin Kala, Julia Andrys, Christopher Thomas, Dipayan Choudhury, Carlos Rocha, Yue Li, and Matthew L. Riley
Geosci. Model Dev., 18, 703–724, https://doi.org/10.5194/gmd-18-703-2025, https://doi.org/10.5194/gmd-18-703-2025, 2025
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We evaluate the skill in simulating the Australian climate of some of the latest generation of regional climate models. We show when and where the models simulate this climate with high skill versus model limitations. We show how new models perform relative to the previous-generation models, assessing how model design features may underlie key performance improvements. This work is of national and international relevance as it can help guide the use and interpretation of climate projections.
Giovanni Di Virgilio, Jason P. Evans, Fei Ji, Eugene Tam, Jatin Kala, Julia Andrys, Christopher Thomas, Dipayan Choudhury, Carlos Rocha, Stephen White, Yue Li, Moutassem El Rafei, Rishav Goyal, Matthew L. Riley, and Jyothi Lingala
Geosci. Model Dev., 18, 671–702, https://doi.org/10.5194/gmd-18-671-2025, https://doi.org/10.5194/gmd-18-671-2025, 2025
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We introduce new climate models that simulate Australia’s future climate at regional scales, including at an unprecedented resolution of 4 km for 1950–2100. We describe the model design process used to create these new climate models. We show how the new models perform relative to previous-generation models and compare their climate projections. This work is of national and international relevance as it can help guide climate model design and the use and interpretation of climate projections.
Nathan P. Gillett, Isla R. Simpson, Gabi Hegerl, Reto Knutti, Dann Mitchell, Aurélien Ribes, Hideo Shiogama, Dáithí Stone, Claudia Tebaldi, Piotr Wolski, Wenxia Zhang, and Vivek K. Arora
EGUsphere, https://doi.org/10.5194/egusphere-2024-4086, https://doi.org/10.5194/egusphere-2024-4086, 2025
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Climate model simulations of the response to human and natural influences together, natural climate influences alone, and greenhouse gases alone, among others, are key to quantifying human influence on the climate. The last set of such coordinated simulations underpinned key findings in the last Intergovernmental Panel on Climate Change (IPCC) report. Here we propose a new set of such simulations to be used in the next generation of attribution studies, and to underpin the next IPCC report.
Katherine Grayson, Stephan Thober, Aleksander Lacima-Nadolnik, Ehsan Sharifi, Llorenç Lledó, and Francisco Doblas-Reyes
EGUsphere, https://doi.org/10.5194/egusphere-2025-28, https://doi.org/10.5194/egusphere-2025-28, 2025
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To provide the most accurate climate adaptation information, climate models are being run with finer grid resolution, resulting in larger data output. This paper presents intelligent data reduction algorithms that act on streamed data, a novel way of processing climate data as soon as it is produced. Using these algorithms to calculate statistics, we show that the accuracy provided is well within acceptable bounds while still providing memory savings that bypass unfeasible storage requirements.
Jiawang Feng, Chun Zhao, Qiuyan Du, Zining Yang, and Chen Jin
Geosci. Model Dev., 18, 585–603, https://doi.org/10.5194/gmd-18-585-2025, https://doi.org/10.5194/gmd-18-585-2025, 2025
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In this study, we improved the calculation of how aerosols in the air interact with radiation in WRF-Chem. The original model used a simplified method, but we developed a more accurate approach. We found that this method significantly changes the properties of the estimated aerosols and their effects on radiation, especially for dust aerosols. It also impacts the simulated weather conditions. Our work highlights the importance of correctly representing aerosol–radiation interactions in models.
Eduardo Moreno-Chamarro, Thomas Arsouze, Mario Acosta, Pierre-Antoine Bretonnière, Miguel Castrillo, Eric Ferrer, Amanda Frigola, Daria Kuznetsova, Eneko Martin-Martinez, Pablo Ortega, and Sergi Palomas
Geosci. Model Dev., 18, 461–482, https://doi.org/10.5194/gmd-18-461-2025, https://doi.org/10.5194/gmd-18-461-2025, 2025
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We present the high-resolution model version of the EC-Earth global climate model to contribute to HighResMIP. The combined model resolution is about 10–15 km in both the ocean and atmosphere, which makes it one of the finest ever used to complete historical and scenario simulations. This model is compared with two lower-resolution versions, with a 100 km and a 25 km grid. The three models are compared with observations to study the improvements thanks to the increased resolution.
Catherine Guiavarc'h, David Storkey, Adam T. Blaker, Ed Blockley, Alex Megann, Helene Hewitt, Michael J. Bell, Daley Calvert, Dan Copsey, Bablu Sinha, Sophia Moreton, Pierre Mathiot, and Bo An
Geosci. Model Dev., 18, 377–403, https://doi.org/10.5194/gmd-18-377-2025, https://doi.org/10.5194/gmd-18-377-2025, 2025
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The Global Ocean and Sea Ice configuration version 9 (GOSI9) is the new UK hierarchy of model configurations based on the Nucleus for European Modelling of the Ocean (NEMO) and available at three resolutions. It will be used for various applications, e.g. weather forecasting and climate prediction. It improves upon the previous version by reducing global temperature and salinity biases and enhancing the representation of Arctic sea ice and the Antarctic Circumpolar Current.
Nick Schüßler, Jewgenij Torizin, Claudia Gunkel, Karsten Schütze, Lars Tiepolt, Dirk Kuhn, Michael Fuchs, and Steffen Prüfer
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-209, https://doi.org/10.5194/gmd-2024-209, 2025
Revised manuscript accepted for GMD
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FACA – Fully Automated Co-Alignment – is a tool designed to generate co-aligned point clouds. We aim to accelerate the application of the co-alignment method and achieve fast results with evolving temporal data and minimal site-specific preparation. FACA offers multiple ways to interact with the workflow, enabling new users to quickly generate initial results through the custom interface, as well as integration into larger automated workflows via the command line. Test datasets are provided.
Andy Richling, Jens Grieger, and Henning W. Rust
Geosci. Model Dev., 18, 361–375, https://doi.org/10.5194/gmd-18-361-2025, https://doi.org/10.5194/gmd-18-361-2025, 2025
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The performance of weather and climate prediction systems is variable in time and space. It is of interest how this performance varies in different situations. We provide a decomposition of a skill score (a measure of forecast performance) as a tool for detailed assessment of performance variability to support model development or forecast improvement. The framework is exemplified with decadal forecasts to assess the impact of different ocean states in the North Atlantic on temperature forecast.
Maria R. Russo, Sadie L. Bartholomew, David Hassell, Alex M. Mason, Erica Neininger, A. James Perman, David A. J. Sproson, Duncan Watson-Parris, and Nathan Luke Abraham
Geosci. Model Dev., 18, 181–191, https://doi.org/10.5194/gmd-18-181-2025, https://doi.org/10.5194/gmd-18-181-2025, 2025
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Observational data and modelling capabilities have expanded in recent years, but there are still barriers preventing these two data sources from being used in synergy. Proper comparison requires generating, storing, and handling a large amount of data. This work describes the first step in the development of a new set of software tools, the VISION toolkit, which can enable the easy and efficient integration of observational and model data required for model evaluation.
Bijan Fallah, Masoud Rostami, Emmanuele Russo, Paula Harder, Christoph Menz, Peter Hoffmann, Iulii Didovets, and Fred F. Hattermann
Geosci. Model Dev., 18, 161–180, https://doi.org/10.5194/gmd-18-161-2025, https://doi.org/10.5194/gmd-18-161-2025, 2025
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We tried to contribute to a local climate change impact study in central Asia, a region that is water-scarce and vulnerable to global climate change. We use regional models and machine learning to produce reliable local data from global climate models. We find that regional models show more realistic and detailed changes in heavy precipitation than global climate models. Our work can help assess the future risks of extreme events and plan adaptation strategies in central Asia.
Cited articles
Bethke, C. M.:
Geochemical and Biogeochemical Reaction Modeling,
Cambridge University Press, 2007.
Bonan, G. B., Hartman, M. D., Parton, W. J., and Wieder, W. R.:
Evaluating litter decomposition in earth system models with long-term litterbag experiments: an example using the Community Land Model version 4 (CLM4),
Glob. Change Biol., 19,
957–974,
https://doi.org/10.1111/gcb.12031, 2012.
Boyer, E. W., Alexander, R. B., Parton, W. J., Li, C., Butterbach-Bahl, K., Donner, S. D., Skaggs, R. W., and Grosso, S. J. D.:
Modeling denitrification in terrestrial and aquatic ecosystems at regional scales,
Ecol. Appl.,
16, 2123–2142,
https://doi.org/10.1890/1051-0761(2006)016[2123:MDITAA]2.0.CO;2, 2006.
Conrad, R.:
Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO),
Microbi. Rev.,
60, 609–640,
available at: http://mmbr.asm.org/content/60/4/609.full.pdf (last access: 14 December 2015), 8987358[pmid], 1996.
da Costa, A. C. L., Galbraith, D., Almeida, S., Portela, B. T. T.,
da Costa, M., de Athaydes Silva Junior, J., Braga, A. P.,
de Gonçalves, P. H. L., de Oliveira, A. A. R., Fisher, R.,
Phillips, O. L., Metcalfe, D. B., Levy, P., and Meir, P.: Effect of 7 yr of
experimental drought on vegetation dynamics and biomass storage of an eastern
Amazonian rainforest, New Phytol., 187, 579–591,
https://doi.org/10.1111/j.1469-8137.2010.03309.x,
2010.
Dickinson, R. E., Berry, J. A., Bonan, G. B., Collatz, G. J., Field, C. B., Fung, I. Y., Goulden, M., Hoffmann, W. A., Jackson, R. B., Myneni, R., Sellers, P. J., and Shaikh, M.:
Nitrogen controls on climate model evapotranspiration,
J. Climate,
15, 278–295,
https://doi.org/10.1175/1520-0442(2002)015<0278:NCOCME>2.0.CO;2, 2002.
Eltrop, L. and Marschner, H.:
Growth and mineral nutrition of non-mycorrhizal and mycorrhizal Norway spruce (Picea abies) seedlings grown in semi-hydroponic sand culture,
New Phytol.,
133, 469–478,
https://doi.org/10.1111/j.1469-8137.1996.tb01914.x, 1996.
Falkengren-Grerup, U.:
Interspecies differences in the preference of ammonium and nitrate in vascular plants,
Oecologia,
102, 305–311,
https://doi.org/10.1007/BF00329797, 1995.
Fang, Y., Huang, M., Liu, C., Li, H., and Leung, L. R.: A generic
biogeochemical module for Earth system models: Next Generation BioGeoChemical
Module (NGBGC), version 1.0, Geosci. Model Dev., 6, 1977–1988,
https://doi.org/10.5194/gmd-6-1977-2013, 2013.
Fennell, D. E. and Gossett, J. M.:
Modeling the production of and competition for hydrogen in a dechlorinating culture,
Environ. Sci. Technol.,
32, 2450–2460,
https://doi.org/10.1021/es980136l, 1998.
Fouilland, E., Gosselin, M., Rivkin, R. B., Vasseur, C., and Mostajir, B.:
Nitrogen uptake by heterotrophic bacteria and phytoplankton in Arctic surface
waters, J. Plankton Res., 29, 369–376, https://doi.org/10.1093/plankt/fbm022, 2007.
Gherardi, L. A., Sala, O. E., and Yahdjian, L.:
Preference for different inorganic nitrogen forms among plant functional types and species of the Patagonian steppe,
Oecologia,
173, 1075–1081,
https://doi.org/10.1007/s00442-013-2687-7, 2013.
Grant, R. F.: Modelling changes in nitrogen cycling to sustain increases in
forest productivity under elevated atmospheric CO2 and contrasting site
conditions, Biogeosciences, 10, 7703–7721, https://doi.org/10.5194/bg-10-7703-2013,
2013.
Gu, C. and Riley, W. J.:
Combined effects of short term rainfall patterns and soil texture on soil nitrogen cycling – a modeling analysis,
J. Contam. Hydrol.,
112, 141–154,
https://doi.org/10.1016/j.jconhyd.2009.12.003, 2010.
Hammond, G. E.:
Innovative Methods for Solving Multicomponent Biogeochemical groundwater Transport on Supercomputers,
Thesis,
University of Illinois, Urbana-Champaign, 2003.
Hammond, G. E., Lichtner, P. C., and Mills, R. T.:
Evaluating the performance of parallel subsurface simulators: an illustrative example with PFLOTRAN,
Water Resour. Res.,
50, 208–228,
https://doi.org/10.1002/2012WR013483, 2014.
Hanson, P. and Wullschleger, S.:
North American Temperate Deciduous Forest Responses to Changing Precipitation Regimes,
Springer Verlag, 2003.
Hanson, P. J., Amthor, J. S., Wullschleger, S. D., Wilson, K. B.,
Grant, R. F., Hartley, A., Hui, D., Hunt, J. E. R., Johnson, D. W.,
Kimball, J. S., King, A. W., Luo, Y., McNulty, S. G., Sun, G.,
Thornton, P. E., Wang, S., Williams, M., Baldocchi, D. D., and
Cushman, R. M.: Oak forest carbon and water simulations: model
intercomparisons and evaluations against independent data, Ecol. Monogr., 74,
443–489, https://doi.org/10.1890/03-4049,
2004.
Hartman, M. D., Baron, J. S., and Ojima, D. S.:
Application of a coupled ecosystem-chemical equilibrium model, DayCent-Chem, to stream and soil chemistry in a Rocky Mountain watershed,
Ecol. Model.,
200, 493–510,
https://doi.org/10.1016/j.ecolmodel.2006.09.001, 2007.
Hinkel, K. M. and Nelson, F. E.:
Spatial and temporal patterns of active layer thickness at Circumpolar Active Layer Monitoring (CALM) sites in northern Alaska, 1995–2000,
J. Geophys. Res.-Atmos.,
108, 8168,
https://doi.org/10.1029/2001JD000927, 2003.
Høgh-Jensen, H., Wollenweber, B., and Schjoerring, J. K.: Kinetics of
nitrate and ammonium absorption and accompanying H+ fluxes in roots of
Lolium perenne L., and N2-fixing Trifolium repens L.,
Plant Cell Environ., 20, 1184–1192,
https://doi.org/10.1046/j.1365-3040.1997.d01-145.x,
1997.
Hungate, R.: The rumen microbial ecosystem, Annu. Rev. Ecol. Syst., 6, 39–66,
https://doi.org/10.1146/annurev.es.06.110175.000351,
1975.
IPCC:
Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change,
Cambridge University Press, Cambridge, UK and New York, NY, USA,
https://doi.org/10.1017/CBO9781107415324, 2013.
Jarrell, K. F.:
Extreme oxygen sensitivity in methanogenic archaebacteria,
BioScience,
35, 298–302,
https://doi.org/10.2307/1309929, 1985.
Kamer, K., Kennison, R. L., and Fong, P.:
Rates of inorganic nitrogen uptake by the estuarine green macroalgae Enteromorpha intestinalis and Ulva expansa,
2003, 130–141, 2001.
Kirchman, D. L.:
The uptake of inorganic nutrients by heterotrophic bacteria,
Microb. Ecol.,
28, 255–271,
https://doi.org/10.1007/BF00166816, 1994.
Kirchman, D. L. and Wheeler, P. A.:
Uptake of ammonium and nitrate by heterotrophic bacteria and phytoplankton in the sub-Arctic Pacific,
Deep-Sea Res. Pt. I,
45, 347–365,
https://doi.org/10.1016/S0967-0637(97)00075-7, 1998.
Kuzyakov, Y. and Xu, X.:
Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance,
New Phytol.,
198, 656–669,
https://doi.org/10.1111/nph.12235, 2013.
Lara, M. J., Villarreal, S., Johnson, D. R., Hollister, R. D., Webber, P. J., and Tweedie, C. E.:
Estimated change in tundra ecosystem function near Barrow, Alaska between 1972 and 2010,
Environ. Res. Lett.,
7, 015507, https://doi.org/10.1088/1748-9326/7/1/015507, 2012.
Lemmon, D. R. and Schafer, J. L.:
Developing Statistical Software in Fortran 95, Statistics and Computing,
Springer, 2005.
Lichtner, P. C., Hammond, G. E., Lu, C., Karra, S., Bisht, G., Andre, B., Mills, R. T., and Jitu, K.:
PFLOTRAN User Manual: a Massively Parallel Reactive Flow and Transport Model for Describing Surface and Subsurface Processes, Report,
2015.
Maggi, F., Gu, C., Riley, W. J., Hornberger, G. M., Venterea, R. T., Xu, T., Spycher, N., Steefel, C., Miller, N. L., and Oldenburg, C. M.:
A mechanistic treatment of the dominant soil nitrogen cycling processes: model development, testing, and application,
J. Geophys. Res.-Biogeo.,
113, G02016,
https://doi.org/10.1029/2007JG000578, 2008.
Manzoni, S. and Porporato, A.:
Soil carbon and nitrogen mineralization: theory and models across scales,
Soil Biol. Biochem.,
41, 1355–1379,
https://doi.org/10.1016/j.soilbio.2009.02.031, 2009.
Middelburg, J. J. and Nieuwenhuize, J.:
Nitrogen uptake by heterotrophic bacteria and phytoplankton in the nitrate-rich Thames Estuary,
Mar. Ecol.-Prog. Ser.,
203, 13–21,
https://doi.org/10.3354/meps203013,
2000.
Nollet, L. M. L. and De Gelder, L. S. P.:
Handbook of Water Analysis, 3rd Edn.,
CRC Press, 2013.
Nordin, A., Högberg, P., and Näsholm, T.:
Soil nitrogen form and plant nitrogen uptake along a boreal forest productivity gradient,
Oecologia,
129, 125–132,
https://doi.org/10.1007/s004420100698, 2001.
Oleson, K., Lawrence, D., Bonan, G., Levis, S., Swenson, S., Thornton, P., Bozbiyik, A., Fisher, R., Heald, C., Kluzek, E., Lamarque, J.-F., Lawrence, P., Lipscomb, W., Muszala, S., and Sacks, W.:
Technical Description of Version 4.5 of the Community Land Model (CLM),
NCAR/TN-503+STR, NCAR Technical Note,
NCAR,
https://doi.org/10.5065/D6RR1W7M, 2013.
Parkhurst, D. L. and Appelo, C.:
User's Guide to PHREEQC (Version 2): a Computer Program for Speciation, Batch-Reaction, One-Dimensional Transport, and Inverse Geochemical Calculations,
Water-Resources Investigations 99-4259,
USGS, 1999.
Parton, W. J., Mosier, A. R., Ojima, D. S., Valentine, D. W., Schimel, D. S., Weier, K., and Kulmala, A. E.:
Generalized model for N2 and N2O production from nitrification and denitrification,
Global Biogeochem. Cy.,
10, 401–412,
https://doi.org/10.1029/96GB01455, 1996.
Parton, W. J., Holland, E. A., Del Grosso, S. J., Hartman, M. D., Martin, R. E., Mosier, A. R., Ojima, D. S., and Schimel, D. S.:
Generalized model for NOx and N2O emissions from soils,
J. Geophys. Res.-Atmos.,
106, 17403–17419,
https://doi.org/10.1029/2001JD900101, 2001.
Pfautsch, S., Rennenberg, H., Bell, T. L., and Adams, M. A.:
Nitrogen uptake by Eucalyptus regnans and Acacia spp. – preferences, resource overlap and energetic costs,
Tree Physiol.,
29, 389–399,
https://doi.org/10.1093/treephys/tpn033, 2009.
Powell, T. L., Galbraith, D. R., Christoffersen, B. O., Harper, A.,
Imbuzeiro, H. M. A., Rowland, L., Almeida, S., Brando, P. M.,
da Costa, A. C. L., Costa, M. H., Levine, N. M., Malhi, Y., Saleska, S. R.,
Sotta, E., Williams, M., Meir, P., and Moorcroft, P. R.: Confronting model
predictions of carbon fluxes with measurements of Amazon forests subjected to
experimental drought, New Phytol., 200, 350–365,
https://doi.org/10.1111/nph.12390, 2013.
Riley, W. J., Maggi, F., Kleber, M., Torn, M. S., Tang, J. Y., Dwivedi, D.,
and Guerry, N.: Long residence times of rapidly decomposable soil organic
matter: application of a multi-phase, multi-component, and vertically
resolved model (BAMS1) to soil carbon dynamics, Geosci. Model Dev., 7,
1335–1355, https://doi.org/10.5194/gmd-7-1335-2014, 2014.
Schmidt, M. W. I., Torn, M. S., Abiven, S., Dittmar, T., Guggenberger, G.,
Janssens, I. A., Kleber, M., Kogel-Knabner, I., Lehmann, J.,
Manning, D. A. C., Nannipieri, P., Rasse, D. P., Weiner, S., and
Trumbore, S. E.: Persistence of soil organic matter as an ecosystem property,
Nature, 478, 49–56,
https://doi.org/10.1038/nature10386, 2011.
Sellers, P. J., Dickinson, R. E., Randall, D. A., Betts, A. K., Hall, F. G.,
Berry, J. A., Collatz, G. J., Denning, A. S., Mooney, H. A., Nobre, C. A.,
Sato, N., Field, C. B., and Henderson-Sellers, A.: Modeling the exchanges of
energy, water, and carbon between continents and the atmosphere, Science,
275, 502–509,
https://doi.org/10.1126/science.275.5299.502,
1997.
Seneviratne, S. I., Corti, T., Davin, E. L., Hirschi, M., Jaeger, E. B., Lehner, I., Orlowsky, B., and Teuling, A. J.:
Investigating soil moisture–climate interactions in a changing climate: a review,
Earth-Sci. Rev.,
99, 125–161,
https://doi.org/10.1016/j.earscirev.2010.02.004, 2010.
Shampine, L. F., Thompson, S., Kierzenka, J. A., and Byrne, G. D.:
Non-negative solutions of ODEs,
Appl. Math. Comput.,
170, 556–569,
https://doi.org/10.1016/j.amc.2004.12.011, 2005.
Sonnenthal, E. L., Spycher, N., Xu, T., Zheng, L., Miller, N. L., and Pruess, K.:
TOUGHREACT V3. 0-OMP Reference Manual: a Parallel Simulation Program for Non-Isothermal Multiphase Geochemical Reactive Transport,
LBNL, Report,
available at: http://esd1.lbl.gov/files/research/projects/tough/documentation/TOUGHREACT_V3-OMP_RefManual.pdf (last access: 29 February 2016),
2014.
Steefel, C. I., Appelo, C. A. J., Arora, B., Jacques, D., Kalbacher, T.,
Kolditz, O., Lagneau, V., Lichtner, P. C., Mayer, K. U., Meeussen, J. C. L.,
Molins, S., Moulton, D., Shao, H., Šimu̇nek, J., Spycher, N.,
Yabusaki, S. B., and Yeh, G. T.: Reactive transport codes for subsurface
environmental simulation, Comput. Geosci., 19, 445–478,
https://doi.org/10.1007/s10596-014-9443-x,
2015.
Tang, G., Yuan, F., Bisht, G., Hammond, G. E., Lichtner, P. C., Kumar, J.,
Mills, R. T., Xu, X., Andre, B., Hoffman, F. M., Painter, S. L., and Thornton, P. E.: Addressing numerical challenges in introducing a reactive transport
code into a land surface model: A biogeochemical modeling proof-of-concept with
CLM-PFLOTRAN 1.0: Modeling Archive, Next Generation Ecosystem Experiments
Arctic Data Collection, Carbon Dioxide Information Analysis Center, Oak Ridge
National Laboratory, Oak Ridge, Tennessee, USA,
https://doi.org/10.5440/1239799, 2016.
Tang, J. Y. and Riley, W. J.: Technical Note: A generic law-of-the-minimum
flux limiter for simulating substrate limitation in biogeochemical models,
Biogeosciences, 13, 723–735, https://doi.org/10.5194/bg-13-723-2016,
2016.
Tang, J. Y., Riley, W. J., Koven, C. D., and Subin, Z. M.: CLM4-BeTR, a
generic biogeochemical transport and reaction module for CLM4: model
development, evaluation, and application, Geosci. Model Dev., 6, 127–140,
https://doi.org/10.5194/gmd-6-127-2013, 2013.
Thornton, P. E. and Rosenbloom, N. A.:
Ecosystem model spin-up: estimating steady state conditions in a coupled terrestrial carbon and nitrogen cycle model,
Ecol. Model.,
189, 25–48,
https://doi.org/10.1016/j.ecolmodel.2005.04.008, 2005.
Veuger, B., Middelburg, J. J., Boschker, H. T. S., Nieuwenhuize, J., van Rijswijk, P., Rochelle-Newall, E. J., and Navarro, N.:
Microbial uptake of dissolved organic and inorganic nitrogen in Randers Fjord,
Estuar. Coast. Shelf S.,
61, 507–515,
https://doi.org/10.1016/j.ecss.2004.06.014, 2004.
Warren, C. R. and Adams, P. R.:
Uptake of nitrate, ammonium and glycine by plants of Tasmanian wet eucalypt forests,
Tree Physiol.,
27, 413–419,
https://doi.org/10.1093/treephys/27.3.413, 2007.
White, M. D. and McGrail, B. P.:
Stomp (Subsurface Transport Over Multiple Phase) Version 1.0 Addendum: Eckechem Equilibrium-Conservationkinetic Equation Chemistry and Reactive Transport, Report,
2005.
Yeh, G. T. and Tripathi, V. S.:
A critical evaluation of recent developments in hydrogeochemical transport models of reactive multi-chemical components,
Water Resour. Res.,
25, 93–108,
https://doi.org/10.1029/WR025i001p00093, 1989.
Yeh, G. T., Sun, J., Jardine, P. M., Burgos, W. D., Fang, Y., Li, M. H., and Siegel, M. D.:
HYDROGEOCHEM 5.0: a Coupled Model of Fluid Flow, Thermal Transport, and HYDROGEO-CHEMical Transport through Saturated-Unsaturated Media: Version 5.0, Report,
2004.
Zheng, C. and Bennett, G. D.: Applied Contaminant Transport Modeling, 2nd
Edn., Wiley-Interscience, 2002.
Short summary
We demonstrate that CLM-PFLOTRAN predictions are consistent with CLM4.5 for Arctic, temperate, and tropical sites. A tight relative tolerance may be needed to avoid false convergence when scaling, clipping, or log transformation is used to avoid negative concentration in implicit time stepping and Newton-Raphson methods. The log transformation method is accurate and robust while relaxing relative tolerance or using the clipping or scaling method can result in efficient solutions.
We demonstrate that CLM-PFLOTRAN predictions are consistent with CLM4.5 for Arctic, temperate,...
