Articles | Volume 7, issue 6
https://doi.org/10.5194/gmd-7-2769-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-7-2769-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper
| 
25 Nov 2014
Model description paper |
| 25 Nov 2014
A skill assessment of the biogeochemical model REcoM2 coupled to the Finite Element Sea Ice–Ocean Model (FESOM 1.3)
V. Schourup-Kristensen
CORRESPONDING AUTHOR
Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, Germany
D. Sidorenko
Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, Germany
D. A. Wolf-Gladrow
Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, Germany
C. Völker
Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, Germany
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Tridib Banerjee, Patrick Scholz, Sergey Danilov, Knut Klingbeil, and Dmitry Sidorenko
Geosci. Model Dev., 17, 7051–7065, https://doi.org/10.5194/gmd-17-7051-2024, https://doi.org/10.5194/gmd-17-7051-2024, 2024
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In this paper we propose a new alternative to one of the functionalities of the sea ice model FESOM2. The alternative we propose allows the model to capture and simulate fast changes in quantities like sea surface elevation more accurately. We also demonstrate that the new alternative is faster and more adept at taking advantages of highly parallelized computing infrastructure. We therefore show that this new alternative is a great addition to the sea ice model FESOM2.
Ja-Yeon Moon, Jan Streffing, Sun-Seon Lee, Tido Semmler, Miguel Andrés-Martínez, Jiao Chen, Eun-Byeoul Cho, Jung-Eun Chu, Christian Franzke, Jan P. Gärtner, Rohit Ghosh, Jan Hegewald, Songyee Hong, Nikolay Koldunov, June-Yi Lee, Zihao Lin, Chao Liu, Svetlana Loza, Wonsun Park, Woncheol Roh, Dmitry V. Sein, Sahil Sharma, Dmitry Sidorenko, Jun-Hyeok Son, Malte F. Stuecker, Qiang Wang, Gyuseok Yi, Martina Zapponini, Thomas Jung, and Axel Timmermann
EGUsphere, https://doi.org/10.5194/egusphere-2024-2491, https://doi.org/10.5194/egusphere-2024-2491, 2024
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Based on a series of storm-resolving greenhouse warming simulations conducted with the AWI-CM3 model at 9 km global atmosphere, 4–25 km ocean resolution, we present new projections of regional climate change, modes of climate variability and extreme events. The 10-year-long high resolution simulations for the 2000s, 2030s, 2060s, 2090s were initialized from a coarser resolution transient run (31 km atmosphere) which follows the SSP5-8.5 greenhouse gas emission scenario from 1950–2100 CE.
Thomas Rackow, Xabier Pedruzo-Bagazgoitia, Tobias Becker, Sebastian Milinski, Irina Sandu, Razvan Aguridan, Peter Bechtold, Sebastian Beyer, Jean Bidlot, Souhail Boussetta, Michail Diamantakis, Peter Dueben, Emanuel Dutra, Richard Forbes, Helge F. Goessling, Ioan Hadade, Jan Hegewald, Sarah Keeley, Lukas Kluft, Nikolay Koldunov, Alexei Koldunov, Tobias Kölling, Josh Kousal, Kristian Mogensen, Tiago Quintino, Inna Polichtchouk, Domokos Sármány, Dmitry Sidorenko, Jan Streffing, Birgit Sützl, Daisuke Takasuka, Steffen Tietsche, Mirco Valentini, Benoît Vannière, Nils Wedi, Lorenzo Zampieri, and Florian Ziemen
EGUsphere, https://doi.org/10.5194/egusphere-2024-913, https://doi.org/10.5194/egusphere-2024-913, 2024
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Detailed global climate model simulations have been created based on a numerical weather prediction model, offering more accurate spatial detail down to the scale of individual cities ("kilometre-scale"), and a better understanding of climate phenomena such as atmospheric storms, whirls in the ocean, and cracks in sea ice. The new model aims to provide globally consistent information on local climate change with greater precision, benefiting environmental planning and local impact modelling.
Sergey Danilov, Carolin Mehlmann, Dmitry Sidorenko, and Qiang Wang
Geosci. Model Dev., 17, 2287–2297, https://doi.org/10.5194/gmd-17-2287-2024, https://doi.org/10.5194/gmd-17-2287-2024, 2024
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Sea ice models are a necessary component of climate models. At very high resolution they are capable of simulating linear kinematic features, such as leads, which are important for better prediction of heat exchanges between the ocean and atmosphere. Two new discretizations are described which improve the sea ice component of the Finite volumE Sea ice–Ocean Model (FESOM version 2) by allowing simulations of finer scales.
Martin Butzin, Ying Ye, Christoph Völker, Özgür Gürses, Judith Hauck, and Peter Köhler
Geosci. Model Dev., 17, 1709–1727, https://doi.org/10.5194/gmd-17-1709-2024, https://doi.org/10.5194/gmd-17-1709-2024, 2024
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In this paper we describe the implementation of the carbon isotopes 13C and 14C into the marine biogeochemistry model FESOM2.1-REcoM3 and present results of long-term test simulations. Our model results are largely consistent with marine carbon isotope reconstructions for the pre-anthropogenic period, but also exhibit some discrepancies.
Qiang Wang, Qi Shu, Alexandra Bozec, Eric P. Chassignet, Pier Giuseppe Fogli, Baylor Fox-Kemper, Andy McC. Hogg, Doroteaciro Iovino, Andrew E. Kiss, Nikolay Koldunov, Julien Le Sommer, Yiwen Li, Pengfei Lin, Hailong Liu, Igor Polyakov, Patrick Scholz, Dmitry Sidorenko, Shizhu Wang, and Xiaobiao Xu
Geosci. Model Dev., 17, 347–379, https://doi.org/10.5194/gmd-17-347-2024, https://doi.org/10.5194/gmd-17-347-2024, 2024
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Increasing resolution improves model skills in simulating the Arctic Ocean, but other factors such as parameterizations and numerics are at least of the same importance for obtaining reliable simulations.
Christoph Heinze, Thorsten Blenckner, Peter Brown, Friederike Fröb, Anne Morée, Adrian L. New, Cara Nissen, Stefanie Rynders, Isabel Seguro, Yevgeny Aksenov, Yuri Artioli, Timothée Bourgeois, Friedrich Burger, Jonathan Buzan, B. B. Cael, Veli Çağlar Yumruktepe, Melissa Chierici, Christopher Danek, Ulf Dieckmann, Agneta Fransson, Thomas Frölicher, Giovanni Galli, Marion Gehlen, Aridane G. González, Melchor Gonzalez-Davila, Nicolas Gruber, Örjan Gustafsson, Judith Hauck, Mikko Heino, Stephanie Henson, Jenny Hieronymus, I. Emma Huertas, Fatma Jebri, Aurich Jeltsch-Thömmes, Fortunat Joos, Jaideep Joshi, Stephen Kelly, Nandini Menon, Precious Mongwe, Laurent Oziel, Sólveig Ólafsdottir, Julien Palmieri, Fiz F. Pérez, Rajamohanan Pillai Ranith, Juliano Ramanantsoa, Tilla Roy, Dagmara Rusiecka, J. Magdalena Santana Casiano, Yeray Santana-Falcón, Jörg Schwinger, Roland Séférian, Miriam Seifert, Anna Shchiptsova, Bablu Sinha, Christopher Somes, Reiner Steinfeldt, Dandan Tao, Jerry Tjiputra, Adam Ulfsbo, Christoph Völker, Tsuyoshi Wakamatsu, and Ying Ye
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-182, https://doi.org/10.5194/bg-2023-182, 2023
Preprint under review for BG
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For assessing the consequences of human-induced climate change for the marine realm, it is necessary to not only look at gradual changes but also at abrupt changes of environmental conditions. We summarise abrupt changes in ocean warming, acidification, and oxygen concentration as the key environmental factors for ecosystems. Taking these abrupt changes into account requires greenhouse gas emissions to be reduced to a larger extent than previously thought to limit respective damage.
Claudia Hinrichs, Peter Köhler, Christoph Völker, and Judith Hauck
Biogeosciences, 20, 3717–3735, https://doi.org/10.5194/bg-20-3717-2023, https://doi.org/10.5194/bg-20-3717-2023, 2023
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This study evaluated the alkalinity distribution in 14 climate models and found that most models underestimate alkalinity at the surface and overestimate it in the deeper ocean. It highlights the need for better understanding and quantification of processes driving alkalinity distribution and calcium carbonate dissolution and the importance of accounting for biases in model results when evaluating potential ocean alkalinity enhancement experiments.
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-181, https://doi.org/10.5194/gmd-2023-181, 2023
Revised manuscript under review for GMD
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Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change the storage of carbon in sediments slows down carbon cycling and influences feedbacks in the atmosphere-ocean-sediment system. Here we coupled a sediment model to an ocean biogeochemistry model and found a shift of carbon storage from the atmosphere to the ocean-sediment system.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
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This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Anne Marie Treguier, Clement de Boyer Montégut, Alexandra Bozec, Eric P. Chassignet, Baylor Fox-Kemper, Andy McC. Hogg, Doroteaciro Iovino, Andrew E. Kiss, Julien Le Sommer, Yiwen Li, Pengfei Lin, Camille Lique, Hailong Liu, Guillaume Serazin, Dmitry Sidorenko, Qiang Wang, Xiaobio Xu, and Steve Yeager
Geosci. Model Dev., 16, 3849–3872, https://doi.org/10.5194/gmd-16-3849-2023, https://doi.org/10.5194/gmd-16-3849-2023, 2023
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The ocean mixed layer is the interface between the ocean interior and the atmosphere and plays a key role in climate variability. We evaluate the performance of the new generation of ocean models for climate studies, designed to resolve
ocean eddies, which are the largest source of ocean variability and modulate the mixed-layer properties. We find that the mixed-layer depth is better represented in eddy-rich models but, unfortunately, not uniformly across the globe and not in all models.
Pengyang Song, Dmitry Sidorenko, Patrick Scholz, Maik Thomas, and Gerrit Lohmann
Geosci. Model Dev., 16, 383–405, https://doi.org/10.5194/gmd-16-383-2023, https://doi.org/10.5194/gmd-16-383-2023, 2023
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Tides have essential effects on the ocean and climate. Most previous research applies parameterised tidal mixing to discuss their effects in models. By comparing the effect of a tidal mixing parameterisation and tidal forcing on the ocean state, we assess the advantages and disadvantages of the two methods. Our results show that tidal mixing in the North Pacific Ocean strongly affects the global thermohaline circulation. We also list some effects that are not considered in the parameterisation.
Jan Streffing, Dmitry Sidorenko, Tido Semmler, Lorenzo Zampieri, Patrick Scholz, Miguel Andrés-Martínez, Nikolay Koldunov, Thomas Rackow, Joakim Kjellsson, Helge Goessling, Marylou Athanase, Qiang Wang, Jan Hegewald, Dmitry V. Sein, Longjiang Mu, Uwe Fladrich, Dirk Barbi, Paul Gierz, Sergey Danilov, Stephan Juricke, Gerrit Lohmann, and Thomas Jung
Geosci. Model Dev., 15, 6399–6427, https://doi.org/10.5194/gmd-15-6399-2022, https://doi.org/10.5194/gmd-15-6399-2022, 2022
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We developed a new atmosphere–ocean coupled climate model, AWI-CM3. Our model is significantly more computationally efficient than its predecessors AWI-CM1 and AWI-CM2. We show that the model, although cheaper to run, provides results of similar quality when modeling the historic period from 1850 to 2014. We identify the remaining weaknesses to outline future work. Finally we preview an improved simulation where the reduction in computational cost has to be invested in higher model resolution.
Xiaoxu Shi, Martin Werner, Carolin Krug, Chris M. Brierley, Anni Zhao, Endurance Igbinosa, Pascale Braconnot, Esther Brady, Jian Cao, Roberta D'Agostino, Johann Jungclaus, Xingxing Liu, Bette Otto-Bliesner, Dmitry Sidorenko, Robert Tomas, Evgeny M. Volodin, Hu Yang, Qiong Zhang, Weipeng Zheng, and Gerrit Lohmann
Clim. Past, 18, 1047–1070, https://doi.org/10.5194/cp-18-1047-2022, https://doi.org/10.5194/cp-18-1047-2022, 2022
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Since the orbital parameters of the past are different from today, applying the modern calendar to the past climate can lead to an artificial bias in seasonal cycles. With the use of multiple model outputs, we found that such a bias is non-ignorable and should be corrected to ensure an accurate comparison between modeled results and observational records, as well as between simulated past and modern climates, especially for the Last Interglacial.
Stephan Krätschmer, Michèlle van der Does, Frank Lamy, Gerrit Lohmann, Christoph Völker, and Martin Werner
Clim. Past, 18, 67–87, https://doi.org/10.5194/cp-18-67-2022, https://doi.org/10.5194/cp-18-67-2022, 2022
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We use an atmospheric model coupled to an aerosol model to investigate the global mineral dust cycle with a focus on the Southern Hemisphere for warmer and colder climate states and compare our results to observational data. Our findings suggest that Australia is the predominant source of dust deposited over Antarctica during the last glacial maximum. In addition, we find that the southward transport of dust from all sources to Antarctica happens at lower altitudes in colder climates.
Patrick Scholz, Dmitry Sidorenko, Sergey Danilov, Qiang Wang, Nikolay Koldunov, Dmitry Sein, and Thomas Jung
Geosci. Model Dev., 15, 335–363, https://doi.org/10.5194/gmd-15-335-2022, https://doi.org/10.5194/gmd-15-335-2022, 2022
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Structured-mesh ocean models are still the most mature in terms of functionality due to their long development history. However, unstructured-mesh ocean models have acquired new features and caught up in their functionality. This paper continues the work by Scholz et al. (2019) of documenting the features available in FESOM2.0. It focuses on the following two aspects: (i) partial bottom cells and embedded sea ice and (ii) dealing with mixing parameterisations enabled by using the CVMix package.
Vera Fofonova, Tuomas Kärnä, Knut Klingbeil, Alexey Androsov, Ivan Kuznetsov, Dmitry Sidorenko, Sergey Danilov, Hans Burchard, and Karen Helen Wiltshire
Geosci. Model Dev., 14, 6945–6975, https://doi.org/10.5194/gmd-14-6945-2021, https://doi.org/10.5194/gmd-14-6945-2021, 2021
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We present a test case of river plume spreading to evaluate coastal ocean models. Our test case reveals the level of numerical mixing (due to parameterizations used and numerical treatment of processes in the model) and the ability of models to reproduce complex dynamics. The major result of our comparative study is that accuracy in reproducing the analytical solution depends less on the type of applied model architecture or numerical grid than it does on the type of advection scheme.
Qiang Wang, Sergey Danilov, Longjiang Mu, Dmitry Sidorenko, and Claudia Wekerle
The Cryosphere, 15, 4703–4725, https://doi.org/10.5194/tc-15-4703-2021, https://doi.org/10.5194/tc-15-4703-2021, 2021
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Using simulations, we found that changes in ocean freshwater content induced by wind perturbations can significantly affect the Arctic sea ice drift, thickness, concentration and deformation rates years after the wind perturbations. The impact is through changes in sea surface height and surface geostrophic currents and the most pronounced in warm seasons. Such a lasting impact might become stronger in a warming climate and implies the importance of ocean initialization in sea ice prediction.
Tobias R. Vonnahme, Martial Leroy, Silke Thoms, Dick van Oevelen, H. Rodger Harvey, Svein Kristiansen, Rolf Gradinger, Ulrike Dietrich, and Christoph Völker
Biogeosciences, 18, 1719–1747, https://doi.org/10.5194/bg-18-1719-2021, https://doi.org/10.5194/bg-18-1719-2021, 2021
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Diatoms are crucial for Arctic coastal spring blooms, and their growth is controlled by nutrients and light. At the end of the bloom, inorganic nitrogen or silicon can be limiting, but nitrogen can be regenerated by bacteria, extending the algal growth phase. Modeling these multi-nutrient dynamics and the role of bacteria is challenging yet crucial for accurate modeling. We recreated spring bloom dynamics in a cultivation experiment and developed a representative dynamic model.
Eric P. Chassignet, Stephen G. Yeager, Baylor Fox-Kemper, Alexandra Bozec, Frederic Castruccio, Gokhan Danabasoglu, Christopher Horvat, Who M. Kim, Nikolay Koldunov, Yiwen Li, Pengfei Lin, Hailong Liu, Dmitry V. Sein, Dmitry Sidorenko, Qiang Wang, and Xiaobiao Xu
Geosci. Model Dev., 13, 4595–4637, https://doi.org/10.5194/gmd-13-4595-2020, https://doi.org/10.5194/gmd-13-4595-2020, 2020
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This paper presents global comparisons of fundamental global climate variables from a suite of four pairs of matched low- and high-resolution ocean and sea ice simulations to assess the robustness of climate-relevant improvements in ocean simulations associated with moving from coarse (∼1°) to eddy-resolving (∼0.1°) horizontal resolutions. Despite significant improvements, greatly enhanced horizontal resolution does not deliver unambiguous bias reduction in all regions for all models.
Hiroyuki Tsujino, L. Shogo Urakawa, Stephen M. Griffies, Gokhan Danabasoglu, Alistair J. Adcroft, Arthur E. Amaral, Thomas Arsouze, Mats Bentsen, Raffaele Bernardello, Claus W. Böning, Alexandra Bozec, Eric P. Chassignet, Sergey Danilov, Raphael Dussin, Eleftheria Exarchou, Pier Giuseppe Fogli, Baylor Fox-Kemper, Chuncheng Guo, Mehmet Ilicak, Doroteaciro Iovino, Who M. Kim, Nikolay Koldunov, Vladimir Lapin, Yiwen Li, Pengfei Lin, Keith Lindsay, Hailong Liu, Matthew C. Long, Yoshiki Komuro, Simon J. Marsland, Simona Masina, Aleksi Nummelin, Jan Klaus Rieck, Yohan Ruprich-Robert, Markus Scheinert, Valentina Sicardi, Dmitry Sidorenko, Tatsuo Suzuki, Hiroaki Tatebe, Qiang Wang, Stephen G. Yeager, and Zipeng Yu
Geosci. Model Dev., 13, 3643–3708, https://doi.org/10.5194/gmd-13-3643-2020, https://doi.org/10.5194/gmd-13-3643-2020, 2020
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The OMIP-2 framework for global ocean–sea-ice model simulations is assessed by comparing multi-model means from 11 CMIP6-class global ocean–sea-ice models calculated separately for the OMIP-1 and OMIP-2 simulations. Many features are very similar between OMIP-1 and OMIP-2 simulations, and yet key improvements in transitioning from OMIP-1 to OMIP-2 are also identified. Thus, the present assessment justifies that future ocean–sea-ice model development and analysis studies use the OMIP-2 framework.
Dmitry Sidorenko, Sergey Danilov, Nikolay Koldunov, Patrick Scholz, and Qiang Wang
Geosci. Model Dev., 13, 3337–3345, https://doi.org/10.5194/gmd-13-3337-2020, https://doi.org/10.5194/gmd-13-3337-2020, 2020
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Computation of barotropic and meridional overturning streamfunctions for models formulated on unstructured meshes is commonly preceded by interpolation to a regular mesh. This operation destroys the original conservation, which can be then be artificially imposed to make the computation possible. An elementary method is proposed that avoids interpolation and preserves conservation in a strict model sense.
Patrick Scholz, Dmitry Sidorenko, Ozgur Gurses, Sergey Danilov, Nikolay Koldunov, Qiang Wang, Dmitry Sein, Margarita Smolentseva, Natalja Rakowsky, and Thomas Jung
Geosci. Model Dev., 12, 4875–4899, https://doi.org/10.5194/gmd-12-4875-2019, https://doi.org/10.5194/gmd-12-4875-2019, 2019
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This paper is the first in a series documenting and assessing important key components of the Finite-volumE Sea ice-Ocean Model version 2.0 (FESOM2.0). We assess the hydrographic biases, large-scale circulation, numerical performance and scalability of FESOM2.0 compared with its predecessor, FESOM1.4. The main conclusion is that the results of FESOM2.0 compare well to FESOM1.4 in terms of model biases but with a remarkable performance speedup with a 3 times higher throughput.
Nikolay V. Koldunov, Vadym Aizinger, Natalja Rakowsky, Patrick Scholz, Dmitry Sidorenko, Sergey Danilov, and Thomas Jung
Geosci. Model Dev., 12, 3991–4012, https://doi.org/10.5194/gmd-12-3991-2019, https://doi.org/10.5194/gmd-12-3991-2019, 2019
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We measure how computational performance of the global FESOM2 ocean model (formulated on an unstructured mesh) changes with the increase in the number of computational cores. We find that for many components of the model the performance increases linearly but we also identify two bottlenecks: sea ice and ssh submodules. We show that FESOM2 is on par with the state-of-the-art ocean models in terms of throughput that reach 16 simulated years per day for eddy resolving configuration (1/10°).
Thomas Rackow, Dmitry V. Sein, Tido Semmler, Sergey Danilov, Nikolay V. Koldunov, Dmitry Sidorenko, Qiang Wang, and Thomas Jung
Geosci. Model Dev., 12, 2635–2656, https://doi.org/10.5194/gmd-12-2635-2019, https://doi.org/10.5194/gmd-12-2635-2019, 2019
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Current climate models show errors in the deep ocean that are larger than the level of natural variability and the response to enhanced greenhouse gas concentrations. These errors are larger than the signals we aim to predict. With the AWI Climate Model, we show that increasing resolution to resolve eddies can lead to major reductions in deep ocean errors. AWI's next-generation (CMIP6) model configuration will thus use locally eddy-resolving computational grids for projecting climate change.
Amelie Driemel, Eberhard Fahrbach, Gerd Rohardt, Agnieszka Beszczynska-Möller, Antje Boetius, Gereon Budéus, Boris Cisewski, Ralph Engbrodt, Steffen Gauger, Walter Geibert, Patrizia Geprägs, Dieter Gerdes, Rainer Gersonde, Arnold L. Gordon, Hannes Grobe, Hartmut H. Hellmer, Enrique Isla, Stanley S. Jacobs, Markus Janout, Wilfried Jokat, Michael Klages, Gerhard Kuhn, Jens Meincke, Sven Ober, Svein Østerhus, Ray G. Peterson, Benjamin Rabe, Bert Rudels, Ursula Schauer, Michael Schröder, Stefanie Schumacher, Rainer Sieger, Jüri Sildam, Thomas Soltwedel, Elena Stangeew, Manfred Stein, Volker H Strass, Jörn Thiede, Sandra Tippenhauer, Cornelis Veth, Wilken-Jon von Appen, Marie-France Weirig, Andreas Wisotzki, Dieter A. Wolf-Gladrow, and Torsten Kanzow
Earth Syst. Sci. Data, 9, 211–220, https://doi.org/10.5194/essd-9-211-2017, https://doi.org/10.5194/essd-9-211-2017, 2017
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Our oceans are always in motion – huge water masses are circulated by winds and by global seawater density gradients resulting from different water temperatures and salinities. Measuring temperature and salinity of the world's oceans is crucial e.g. to understand our climate. Since 1983, the research icebreaker Polarstern has been the basis of numerous water profile measurements in the Arctic and the Antarctic. We report on a unique collection of 33 years of polar salinity and temperature data.
Sergey Danilov, Dmitry Sidorenko, Qiang Wang, and Thomas Jung
Geosci. Model Dev., 10, 765–789, https://doi.org/10.5194/gmd-10-765-2017, https://doi.org/10.5194/gmd-10-765-2017, 2017
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Numerical models of global ocean circulation are used to learn about future climate. The ocean circulation is characterized by processes on different spatial scales which are still beyond the reach of present computers. We describe a new model setup that allows one to vary a model's spatial resolution and hence focus the computational power on regional dynamics, reaching a better description of local processes in areas of interest.
Charlotte Laufkötter, Meike Vogt, Nicolas Gruber, Olivier Aumont, Laurent Bopp, Scott C. Doney, John P. Dunne, Judith Hauck, Jasmin G. John, Ivan D. Lima, Roland Seferian, and Christoph Völker
Biogeosciences, 13, 4023–4047, https://doi.org/10.5194/bg-13-4023-2016, https://doi.org/10.5194/bg-13-4023-2016, 2016
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We compare future projections in marine export production, generated by four ecosystem models under IPCC's high-emission scenario RCP8.5. While all models project decreases in export, they differ strongly regarding the drivers. The formation of sinking particles of organic matter is the most uncertain process with models not agreeing on either magnitude or the direction of change. Changes in diatom concentration are a strong driver for export in some models but of low significance in others.
C. Laufkötter, M. Vogt, N. Gruber, M. Aita-Noguchi, O. Aumont, L. Bopp, E. Buitenhuis, S. C. Doney, J. Dunne, T. Hashioka, J. Hauck, T. Hirata, J. John, C. Le Quéré, I. D. Lima, H. Nakano, R. Seferian, I. Totterdell, M. Vichi, and C. Völker
Biogeosciences, 12, 6955–6984, https://doi.org/10.5194/bg-12-6955-2015, https://doi.org/10.5194/bg-12-6955-2015, 2015
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We analyze changes in marine net primary production (NPP) and its drivers for the 21st century in 9 marine ecosystem models under the RCP8.5 scenario. NPP decreases in 5 models and increases in 1 model; 3 models show no significant trend. The main drivers include stronger nutrient limitation, but in many models warming-induced increases in phytoplankton growth outbalance the nutrient effect. Temperature-driven increases in grazing and other loss processes cause a net decrease in biomass and NPP.
P. R. Halloran, B. B. B. Booth, C. D. Jones, F. H. Lambert, D. J. McNeall, I. J. Totterdell, and C. Völker
Biogeosciences, 12, 4497–4508, https://doi.org/10.5194/bg-12-4497-2015, https://doi.org/10.5194/bg-12-4497-2015, 2015
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The oceans currently take up around a quarter of the carbon dioxide (CO2) emitted by human activity. While stored in the ocean, this CO2 is not causing global warming. Here we explore high latitude North Atlantic CO2 uptake across a set of climate model simulations, and find that the models show a peak in ocean CO2 uptake around the middle of the century after which time CO2 uptake begins to decline. We identify the causes of this long-term change and interannual variability in the models.
S. Danilov, Q. Wang, R. Timmermann, N. Iakovlev, D. Sidorenko, M. Kimmritz, T. Jung, and J. Schröter
Geosci. Model Dev., 8, 1747–1761, https://doi.org/10.5194/gmd-8-1747-2015, https://doi.org/10.5194/gmd-8-1747-2015, 2015
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Unstructured meshes allow multi-resolution modeling of ocean dynamics. Sea ice models formulated on unstructured meshes are a necessary component of ocean models intended for climate studies. This work presents a description of a finite-element sea ice model which is used as a component of a finite-element sea ice ocean circulation model. The principles underlying its design can be of interest to other groups pursuing ocean modelling on unstructured meshes.
Q. Wang, S. Danilov, D. Sidorenko, R. Timmermann, C. Wekerle, X. Wang, T. Jung, and J. Schröter
Geosci. Model Dev., 7, 663–693, https://doi.org/10.5194/gmd-7-663-2014, https://doi.org/10.5194/gmd-7-663-2014, 2014
Related subject area
Biogeosciences
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCO v4-Hg: the role of surfactants and waves
BOATSv2: New ecological and economic features improve simulations of High Seas catch and effort
Lambda-PFLOTRAN 1.0: Workflow for Incorporating Organic Matter Chemistry Informed by Ultra High Resolution Mass Spectrometry into Biogeochemical Modeling
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
A dynamical process-based model AMmonia–CLIMate v1.0 (AMCLIM v1.0) for quantifying global agricultural ammonia emissions – Part 1: Land module for simulating emissions from synthetic fertilizer use
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water, and nitrogen perturbations
A novel Eulerian model based on central moments to simulate age and reactivity continua interacting with mixing processes
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO, and NH3 emissions from enhanced rock weathering with croplands
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
Modeling of non-structural carbohydrate dynamics by the spatially explicit individual-based dynamic global vegetation model SEIB-DGVM (SEIB-DGVM-NSC version 1.0)
MEDFATE 2.9.3: a trait-enabled model to simulate Mediterranean forest function and dynamics at regional scales
Modelling the role of livestock grazing in C and N cycling in grasslands with LPJmL5.0-grazing
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-81, https://doi.org/10.5194/gmd-2024-81, 2024
Revised manuscript accepted for GMD
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The estimation of Hg0 fluxes is of great uncertainty due to neglecting wave breaking and sea surfactant. Integrating these factors into MITgcm significantly rise Hg0 transfer velocity. The updated model shows increased fluxes in high wind and wave regions and vice versa, enhancing the spatial heterogeneity. It shows a stronger correlation between Hg0 transfer velocity and wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-26, https://doi.org/10.5194/gmd-2024-26, 2024
Revised manuscript accepted for GMD
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Numerical models that capture key features of the global dynamics of fish communities play a crucial role in addressing the impacts of climate change and industrial fishing on ecosystems and societies. Here, we detail an update of the BiOeconomic marine Trophic Size-spectrum model that corrects the model representation of the dynamic of fisheries in the High Seas. This update also allows a better representation of biodiversity to improve future global and regional fisheries studies.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-34, https://doi.org/10.5194/gmd-2024-34, 2024
Revised manuscript accepted for GMD
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The newly developed Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate respiration and the resulting biogeochemistry. Lambda-PFLOTRAN is a python-based workflow via a Jupyter Notebook interface, that digests raw organic matter chemistry data via FTICR-MS, develops the representative reaction network, and completes a biogeochemical simulation with the open source, parallel reactive flow and transport code PFLOTRAN.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
EGUsphere, https://doi.org/10.5194/egusphere-2024-962, https://doi.org/10.5194/egusphere-2024-962, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use, whilst taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers were lost due to NH3 emissions. Hot and dry conditions and regions with high pH soils can expect higher NH3 emissions.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
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This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
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We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
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Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
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The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
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We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
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Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
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We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
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Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
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In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
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Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
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This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
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Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
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Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
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Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
Jens Heinke, Susanne Rolinski, and Christoph Müller
Geosci. Model Dev., 16, 2455–2475, https://doi.org/10.5194/gmd-16-2455-2023, https://doi.org/10.5194/gmd-16-2455-2023, 2023
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We develop a livestock module for the global vegetation model LPJmL5.0 to simulate the impact of grazing dairy cattle on carbon and nitrogen cycles in grasslands. A novelty of the approach is that it accounts for the effect of feed quality on feed uptake and feed utilization by animals. The portioning of dietary nitrogen into milk, feces, and urine shows very good agreement with estimates obtained from animal trials.
Cited articles
Alvain, S., Moulin, C., Dandonneau, Y., and Bréon, F.: Remote sensing of phytoplankton groups in case 1 waters from global SeaWiFS imagery, Deep-Sea Res. Pt. I, 52, 1989–2004, https://doi.org/10.1016/j.dsr.2005.06.015, 2005.
Assmann, K. M., Bentsen, M., Segschneider, J., and Heinze, C.: An isopycnic ocean carbon cycle model, Geosci. Model Dev., 3, 143–167, https://doi.org/10.5194/gmd-3-143-2010, 2010.
Aumont, O. and Bopp, L.: Globalizing results from ocean in situ iron fertilization studies, Global Biogeochem. Cy., 20, GB2017, https://doi.org/10.1029/2005GB002591, 2006.
Aumont, O., Orr, J., Monfray, P., Madec, G., and Maier-Reimer, E.: Nutrient trapping in the equatorial Pacific: The ocean circulation solution, Global Biogeochem. Cy., 13, 351–369, https://doi.org/10.1029/1998GB900012, 1999.
Aumont, O., Maier-Reimer, E., Blain, S., and Monfray, F.: An ecosystem model of the global ocean including Fe, Si, P colimitations, Global Biogeochem. Cy., 17, 1060, https://doi.org/10.1029/2001GB001745, 2003.
Behrenfeld, M. J.: Abandoning Sverdrup's critical depth hypothesis on phytoplankton blooms, Ecology, 91, 977–989, https://doi.org/10.3410/f.2137018.1737130, 2010.
Behrenfeld, M. J. and Falkowski, P. G.: Photosynthetic rates derived from satellite-based chlorophyll concentration, Limnol. Oceanogr., 42, 1–20, https://doi.org/10.4319/lo.1997.42.1.0001, 1997.
Behrenfeld, M. J., O'Malley, R. T., Siegel, D. A., McClain, C. R., Sarmiento, J. L., Feldman, G. C., Milligan, A. J., Falkowski, P. G., Letelier, R. M., and Boss, E. S.: Climate-driven trends in contemporary ocean productivity, Nature, 444, 752–755, https://doi.org/10.1038/nature05317, 2006.
Bernard, C. Y., Dürr, H. H., Heinze, C., Segschneider, J., and Maier-Reimer, E.: Contribution of riverine nutrients to the silicon biogeochemistry of the global ocean – a model study, Biogeosciences, 8, 551–564, https://doi.org/10.5194/bg-8-551-2011, 2011.
Bopp, L., Resplandy, L., Orr, J. C., Doney, S. C., Dunne, J. P., Gehlen, M., Halloran, P., Heinze, C., Ilyina, T., Séférian, R., Tjiputra, J., and Vichi, M.: Multiple stressors of ocean ecosystems in the 21st century: projections with CMIP5 models, Biogeosciences, 10, 6225–6245, https://doi.org/10.5194/bg-10-6225-2013, 2013.
Broecker, W. S., Peng, T.-H., and Beng, Z.: Tracers in the Sea, Lamont-Doherty Geological Observatory, Columbia University, Palisades, New York, 1982.
Carr, M.-E., Friedrichs, M. A. M., Schmeltz, M., Noguchi Aita, M., Antoine, D., Arrigo, K. R., Asanuma, I., Aumont, O., Barber, R., Behrenfeld, M., Bidigare, R., Buitenhuis, E. T., Campbell, J., Ciotti, A., Dierssen, H., Dowell, M., Dunne, J., Esaias, W., Gentili, B., Gregg, W., Groom, S., Hoepffner, N., Ishizaka, J., Kameda, T., Le Quéré, C., Lohrenz, S., Marra, J., Mélin, F., Moore, K., Morel, A., Reddy, T. E., Ryan, J., Scardi, M., Smyth, T., Turpie, K., Tilstone, G., Waters, K., and Yamanaka, Y.: A comparison of global estimates of marine primary production from ocean color, Deep-Sea Res. Pt. II, 53, 741–770, https://doi.org/10.1016/j.dsr2.2006.01.028, 2006.
Chen, C., Liu, H., and Beardsley, R. C.: An unstructured grid, finite-volume, three-dimensional, primitive equations ocean model: application to coastal ocean and estuaries, J. Atmos. Ocean. Tech., 20, 159–186, https://doi.org/10.1175/1520-0426(2003)020<0159:AUGFVT>2.0.CO;2, 2003.
Danilov, S., Kivman, G., and Schröter, J.: A finite-element ocean model: principles and evaluation, Ocean Model., 6, 125–150, https://doi.org/10.1016/S1463-5003(02)00063-X, 2004.
De Baar, H. J. W., De Jong, J. T. M., Bakker, D. C., Löscher, B. M., Veth, C., Bathmann, U., and Smetacek, V.: Importance of iron for plankton blooms and carbon dioxide drawdown in the Southern Ocean, Nature, 373, 412–415, https://doi.org/10.1038/373412a0, 1995.
de Boyer Montegut, C., Madec, G., Fischer, A. S., Lazar, A., and Iudicone, D.: Mixed layer depth over the global ocean: An examination of profile data and a profile-based climatology, J. Geophys. Res., 109, C12003, https://doi.org/10.1029/2004JC002378, 2004.
Doney, S. C., Lindsay, K., Caldeira, K., Campin, J.-M., Drange, H., Dutay, J.-C., Follows, M., Gao, Y., Gnanadesikan, A., Gruber, N., Ishida, A., Joos, F., Madec, G., Maier-Reimer, E., Marshall, J. C., Matear, R. J., Monfray, P., Mouchet, A., Najjar, R., Orr, J. C., Plattner, G. K., Sarmiento, J. L., Schlitzer, R., Slater, R. D., Totterdell, I. J., Weirig, M. F., Yamanaka, Y., and Yool, A.: Evaluating global ocean carbon models: the importance of realistic physics, Global Biogeochem. Cy., 18, GB3017, https://doi.org/10.1029/2003GB002150, 2004.
Doney, S. C., Lima, I., Moore, J. K., Lindsay, K., Behrenfeld, M. J., Westberry, T. K., Mahowald, N., Glover, D. M., and Takahashi, T.: Skill metrics for confronting global upper ocean ecosystem-biogeochemistry models against field and remote sensing data, J. Marine Syst., 76, 95–112, https://doi.org/10.1016/j.jmarsys.2008.05.015, 2009.
Downes, S., Farneti, R., Uotilac, P., Griffies, S. M., Marsland, S., Bailey, D., Behrens, E., Bentsen, M., Bi, D., Biastoch, A., Böning, C., Bozec, A., Chassignet, E., Danabasoglu, G., Danilov, S., Diansky, N., Drange, H., Fogli, P. G., Gusev, A., Howard, A., Illicak, M., Jung, T., Kelley, M., Large, W. G., Leboissetiero, A., Long, M., Lu, J., Masina, S., Mishra, A., Navarra, A., Nurserp, A. J. G., Patara, L., Samuels, B. L., Sidorenko, D., Spence, P., Tsujino, H., Wang, Q., and Yeager, S. G.: An assessment of Southern Ocean water masses and sea ice during 1988–2007 in a suite of inter-annual CORE-II simulations, Clim. Dynam., in preparation, 2014.
Droop, M.: 25 Years of algal growth kinetics a personal view, Bot. Mar., 26, 99–112, https://doi.org/10.1515/botm.1983.26.3.99, 1983.
Dunne, J. P., Sarmiento, J. L., and Gnanadesikan, A.: A synthesis of global particle export from the surface ocean and cycling through the ocean interior and on the seafloor, Global Biogeochem. Cy., 21, GB4006, https://doi.org/10.1029/2006GB002907, 2007.
Elrod, V. A., Berelson, W. M., Coale, K. H., and Johnson, K. S.: The flux of iron from continental shelf sediments: a missing source for global budgets, Geophys. Res. Lett., 31, L12307, https://doi.org/10.1029/2004GL020216, 2004.
Friedrichs, M. A., Carr, M.-E., Barber, R. T., Scardi, M., Antoine, D., Armstrong, R. A., Asanuma, I., Behrenfeld, M. J., Buitenhuis, E. T., Chai, F., Christian, J. R., Ciotti, A. M., Doney, S. C., Dowell, M., Dunne, J., Gentili, B., Gregg, W., Hoepffner, N., Ishizaka, J., Kameda, T., Lima, I., Marra, J., Mélin, F., Moore, J. K., Morel, A., O'Malley, R. T., O'Reilly, J., Saba, V. S., Schmeltz, M., Smyth, T. J., Tjiputra, J., Waters, K., Westberry, T. K., and Winguth, A.: Assessing the uncertainties of model estimates of primary productivity in the tropical Pacific Ocean, J. Marine Syst., 76, 113–133, https://doi.org/10.1016/j.jmarsys.2008.05.010, 2009.
Fung, I. Y., Meyn, S. K., Tegen, I., Doney, S. C., John, J. G., and Bishop, J. K. B.: Iron supply and demand in the upper ocean, Global Biogeochem. Cy., 14, 281–295, https://doi.org/10.1029/1999GB900059, 2000.
Garcia, H., Locarnini, R., Boyer, T., and Antonov, J.: World Ocean Atlas 2005, Nutrients (Phosphate, Nitrate, Silicate), Vol. 4, edited by: Levitus, S., Tech. rep., NOAA Atlas NESDIS 64, Washington DC, 2006.
Garcia, H., Locarnini, R., Boyer, T., Antonov, J., Zweng, M., Baranova, O., and Johnson, D.: World Ocean Atlas 2009, Nutrients (phosphate, nitrate, silicate), edited by: Levitus, S., Vol. 4, Tech. rep., NOAA Atlas NESDIS, Washington DC, 2010.
Geider, R. J., MacIntyre, H. L., and Kana, T. M.: A dynamic model of photoadaptation in phytoplankton, Limnol. Oceanogr., 41, 1–15, 1996.
Geider, R. J., MacIntyre, H. L., and Kana, T. M.: A dynamic regulatory model of phytoplanktonic acclimation to light, nutrients, and temperature, Limnol. Oceanogr., 43, 679–694, https://doi.org/10.4319/lo.1998.43.4.0679, 1998.
Gent, P. R. and Mcwilliams, J. C.: Isopycnal mixing in ocean circulation models, J. Phys. Oceanogr., 20, 150–155, https://doi.org/10.1175/1520-0485(1981)011<1443:POVMIN>2.0.CO;2, 1990.
Gent, P. R., Yeager, S. G., Neale, R. B., Levis, S., and Bailey, D. A.: Improvements in a half degree atmosphere/land version of the CCSM, Clim. Dynam., 34, 819–833, https://doi.org/10.1007/s00382-009-0614-8, 2010.
Gentleman, W., Leising, A., Frost, B., Strom, S., and Murray, J.: Functional responses for zooplankton feeding on multiple resources: a review of assumptions and biological dynamics, Deep-Sea Res. Pt. II, 50, 2847–2875, https://doi.org/10.1016/j.dsr2.2003.07.001, 2003.
Globcolour – Globcolour project, the European Service for Ocean Colour, available at: http://www.globcolour.info, last access: 1 December 2012.
Gordon, R. M., Coale, K. H., and Johnson, K. S.: Iron distributions in the equatorial Pacific: implications for new production, Limnol. Oceanogr., 42, 419–431, 1997.
Gregg, W. W. and Casey, N. W.: Global and regional evaluation of the SeaWiFS chlorophyll data set, Remote Sens. Environ., 93, 463–479, https://doi.org/10.1016/j.rse.2003.12.012, 2004.
Griffies, S. M., Biastoch, A., Böning, C., Bryan, F., Danabasoglu, G., Chassignet, E. P., England, M. H., Gerdes, R., Haak, H., Hallberg, R. W., Hazeleger, W., Jungclaus, J., Large, W. G., Madec, G., Pirani, A., Samuels, B. L., Scheinert, M., Gupta, A. S., Severijns, C. A., Simmons, H. L., Treguier, A. M., Winton, M., Yeager, S., and Yin, J.: Coordinated ocean-ice reference experiments (COREs), Ocean Model., 26, 1–46, https://doi.org/10.1016/j.ocemod.2008.08.007, 2009.
Haid, V. and Timmermann, R.: Simulated heat flux and sea ice production at coastal polynyas in the southwestern Weddell Sea, J. Geophys. Res., 118, 2640–2652, https://doi.org/10.1002/jgrc.20133, 2013.
Hashioka, T., Vogt, M., Yamanaka, Y., Le Quéré, C., Buitenhuis, E. T., Aita, M. N., Alvain, S., Bopp, L., Hirata, T., Lima, I., Sailley, S., and Doney, S. C.: Phytoplankton competition during the spring bloom in four plankton functional type models, Biogeosciences, 10, 6833–6850, https://doi.org/10.5194/bg-10-6833-2013, 2013.
Hauck, J., Völker, C., Wang, T., Hoppema, M., Losch, M., and Wolf-Gladrow, D.: Seasonally different carbon flux changes in the Southern Ocean in response to the Southern Annular Mode, Global Biogeochem. Cy., 27, 1–10, https://doi.org/10.1002/2013GB004600, 2013.
Hill, J., Popova, E. E., Ham, D. A., Piggott, M. D., and Srokosz, M.: Adapting to life: ocean biogeochemical modelling and adaptive remeshing, Ocean Sci., 10, 323–343, https://doi.org/10.5194/os-10-323-2014, 2014.
Hirata, T., Hardman-Mountford, N. J., Brewin, R. J. W., Aiken, J., Barlow, R., Suzuki, K., Isada, T., Howell, E., Hashioka, T., Noguchi-Aita, M., and Yamanaka, Y.: Synoptic relationships between surface Chlorophyll-a and diagnostic pigments specific to phytoplankton functional types, Biogeosciences, 8, 311–327, https://doi.org/10.5194/bg-8-311-2011, 2011.
Hohn, S.: Coupling and decoupling of biogeochemical cycles in marine ecosystems, Ph.D. thesis, Bremen University, Germany, 2009.
Holzer, M., Primeau, F. W., DeVries, T., and Matear, R.: The Southern Ocean silicon trap: data-constrained estimates of regenerated silicic acid, trapping efficiencies, and global transport paths, J. Geophys. Res., 119, 313–331, https://doi.org/10.1002/2013JC009356, 2014.
Hoppema, M., de Baar, H. J., Fahrbach, E., Hellmer, H. H., and Klein, B.: Substantial advective iron loss diminishes phytoplankton production in the Antarctic Zone, Global Biogeochem. Cy., 17, 1025, https://doi.org/10.1029/2002GB001957, 2003.
Jakobsson, M., Macnab, R., Mayer, L., Anderson, R., Edwards, M., Hatzky, J., Schenke, H. W., and Johnson, P.: An improved bathymetric portrayal of the Arctic Ocean: Implications for ocean modeling and geological, geophysical and oceanographic analyses, Geophys. Res. Lett., 35, L07602, https://doi.org/10.1029/2008GL033520, 2008.
Jin, X., Gruber, N., Dunne, J. P., Sarmiento, J. L., and Armstrong, R. A.: Diagnosing the contribution of phytoplankton functional groups to the production and export of particulate organic carbon, CaCO3, and opal from global nutrient and alkalinity distributions, Global Biogeochem. Cy., 20, GB2015, https://doi.org/10.1029/2005GB002532, 2006.
Johnson, G. C., McPhaden, M. J., and Firing, E.: Equatorial Pacific Ocean horizontal velocity, divergence, and upwelling, J. Phys. Oceanogr., 31, 839–849, https://doi.org/10.1175/1520-0485(2001)031<0839:EPOHVD>2.0.CO;2, 2001.
Kamatani, A.: Dissolution rates of silica from diatoms decomposing at various temperatures, Mar. Biol., 68, 91–96, https://doi.org/10.1007/BF00393146, 1982.
Key, R. M., Kozyr, A., Sabine, C. L., Lee, K., Wanninkhof, R., Bullister, J. L., Feely, R. A., Millero, F. J., Mordy, C., and Peng, T.-H.: A global ocean carbon climatology: Results from Global Data Analysis Project (GLODAP), Global Biogeochem. Cy., 18, GB4031, https://doi.org/10.1029/2004GB002247, 2004.
Kriest, I. and Oschlies, A.: On the treatment of particulate organic matter sinking in large-scale models of marine biogeochemical cycles, Biogeosciences, 5, 55–72, https://doi.org/10.5194/bg-5-55-2008, 2008.
Lam, P. J. and Bishop, J. K.: The continental margin is a key source of iron to the HNLC North Pacific Ocean, Geophys. Res. Lett., 35, L07608, https://doi.org/10.1029/2008GL033294, 2008.
Lancelot, C., de Montety, A., Goosse, H., Becquevort, S., Schoemann, V., Pasquer, B., and Vancoppenolle, M.: Spatial distribution of the iron supply to phytoplankton in the Southern Ocean: a model study, Biogeosciences, 6, 2861–2878, https://doi.org/10.5194/bg-6-2861-2009, 2009.
Large, W. G. and Yeager, S. G.: Diurnal to Decadal Global Forcing for Oceans and Sea-Ice Models: The Data Sets and Flux Climatologies, NCAR/TN-460+STR, Tech. rep., National Center for Atmos. Res., Boulder, Colorado, 2004.
Large, W. G. and Yeager, S. G.: The global climatology of an interannually varying air–sea flux data set, Clim. Dynam., 33, 341–364, https://doi.org/10.1007/s00382-008-0441-3, 2009.
Laws, E. A., Falkowski, P. G., Smith, W. O., Ducklow, H., and McCarthy, J. J.: Temperature effects on export production in the open ocean, Global Biogeochem. Cy., 14, 1231–1246, https://doi.org/10.1029/1999GB001229, 2000.
Le Quéré, C., Aumont, O., Monfray, P., and Orr, J.: Propagation of climatic events on ocean stratification, marine biology, and CO2: Case studies over the 1979–1999 period, J. Geophys. Res., 108, 3375, https://doi.org/10.1029/2001JC000920, 2003.
Löscher, B. M., De Baar, H. J. W., De Jong, J. T. M., Veth, C., and Dehairs, F.: The distribution of Fe in the Antarctic circumpolar current, Deep-Sea Res. Pt. II, 44, 143–187, https://doi.org/10.1016/S0967-0645(96)00101-4, 1997.
Luo, C., Mahowald, N. M., and Del Corral, J.: Sensitivity study of meteorological parameters on mineral aerosol mobilization, transport, and distribution, J. Geophys. Res., 108, 4447, https://doi.org/10.1029/2003JD003483, 2003.
Mahowald, N., Luo, C., Del Corral, J., and Zender, C. S.: Interannual variability in atmospheric mineral aerosols from a 22-year model simulation and observational data, J. Geophys. Res., 108, 4352, https://doi.org/10.1029/2002JD002821, 2003.
Martin, J. H., Gordon, R. M., and Fitzwater, S. E.: The case for iron, Limnol. Oceanogr., 36, 1793–1802, 1991.
Moore, J. K. and Braucher, O.: Sedimentary and mineral dust sources of dissolved iron to the world ocean, Biogeosciences, 5, 631–656, https://doi.org/10.5194/bg-5-631-2008, 2008.
Moore, J. K., Abbott, M. R., and Richman, J. G.: Location and dynamics of the Antarctic Polar Front from satellite sea surface temperature data, J. Geophys. Res., 104, 3059–3073, 1999.
Moore, J. K., Doney, S. C., Glover, D. M., and Fung, I. Y.: Iron cycling and nutrient-limitation patterns in surface waters of the World Ocean, Deep-Sea Res. Pt. II, 49, 463–507, https://doi.org/10.1016/S0967-0645(01)00109-6, 2002.
Moore, J. K., Doney, S. C., and Lindsay, K.: Upper ocean ecosystem dynamics and iron cycling in a global three-dimensional model, Global Biogeochem. Cy., 18, GB4028, https://doi.org/10.1029/2004GB002220, 2004.
Najjar, R. G., Jin, X., Louanchi, F., Aumont, O., Caldeira, K., Doney, S. C., Dutay, J.-C., Follows, M., Gruber, N., Joos, F., Lindsay, K., Maier-Reimer, E., Matear, R. J., Matsumoto, K., Monfray, P., Mouchet, A., Orr, J. C., Plattner, G.-K., Sarmiento, J. L., Schlitzer, R., Slater, R. D., Weirig, M.-F., Yamanaka, Y., and Yool, A.: Impact of circulation on export production, dissolved organic matter, and dissolved oxygen in the ocean: results from Phase II of the Ocean Carbon-cycle Model Intercomparison Project (OCMIP-2), Global Biogeochem. Cy., 21, GB3007, https://doi.org/10.1029/2006GB002857, 2007.
Nevison, C., Keeling, R., Kahru, M., Manizza, M., Mitchell, B., and Cassar, N.: Estimating net community production in the Southern Ocean based on atmospheric potential oxygen and satellite ocean color data, Global Biogeochem. Cy., 26, GB1020, https://doi.org/10.1029/2011GB004040, 2012.
O'Neill, R. V., DeAngelis, D. L., Pastor, J. J., Jackson, B. J., and Post, W. M.: Multiple nutrient limitations in ecological models, Ecol. Model., 46, 147–163, https://doi.org/10.1016/0304-3800(89)90015-X, 1989.
Orr, J., Najjar, R., Sabine, C. L., and Joos, F.: Abiotic-HOWTO, Tech. rep., Internal OCMIP Report, LSCE/CEA Saclay, Gif-sur-Yvette, France, 1999. \bibitem[Pacanowski and Philander(1981)Pacanowski and Philander] Pacanowski:1981vt Pacanowski, R. C. and Philander, S. G. H.: Parameterization of vertical mixing in numerical models of tropical oceans, J. Phys. Oceanogr., 11, 1443–1451, https://doi.org/10.1175/1520-0485(1981)011<1443:POVMIN>2.0.CO;2, 1981.
Parekh, P., Follows, M. J., and Boyle, E. A.: Decoupling of iron and phosphate in the global ocean, Global Biogeochem. Cy., 19, GB2020, https://doi.org/10.1029/2004GB002280, 2005.
Parkinson, C. L. and Washington, W. M.: A large-scale numerical model of sea ice, J. Geophys. Res., 84, 311–337, https://doi.org/10.1029/JC084iC01p00311, 1979.
Piggott, M. D., Gorman, G. J., Pain, C. C., Allison, P. A., Candy, A. S., Martin, B. T., and Wells, M. R.: A new computational framework for multi-scale ocean modelling based on adapting unstructured meshes, Int. J. Numer. Meth. Fl., 56, 1003–1015, https://doi.org/10.1002/fld.1663, 2008.
Redi, M.: Oceanic isopycnal mixing by coordinate rotation, J. Phys. Oceanogr., 12, 1154–1158, https://doi.org/10.1175/1520-0485(1982)012<1154:OIMBCR>2.0.CO;2, 1982.
Schlitzer, R.: Carbon export fluxes in the Southern Ocean: Results from inverse modeling and comparison with satellite-based estimates, Deep-Sea Res. Pt. II, 49, 1623–1644, https://doi.org/10.1016/S0967-0645(02)00004-8, 2002.
Schlitzer, R.: Export production in the equatorial and North Pacific derived from dissolved oxygen, nutrient and carbon data, J. Oceanogr., 60, 53–62, https://doi.org/10.1023/B:JOCE.0000038318.38916.e6, 2004.
Schneider, B., Bopp, L., Gehlen, M., Segschneider, J., Frölicher, T. L., Cadule, P., Friedlingstein, P., Doney, S. C., Behrenfeld, M. J., and Joos, F.: Climate-induced interannual variability of marine primary and export production in three global coupled climate carbon cycle models, Biogeosciences, 5, 597–614, https://doi.org/10.5194/bg-5-597-2008, 2008.
Schourup-Kristensen, V., Hauck, J., Wolf-Gladrow, D. A., and Völker, C.: Vertical supply of iron to the mixed layer of the Southern Ocean: The ocean model effect, J. Geophys. Res., in preparation, 2014.
SeaWIFS: available at: Ocean productivity home page, http://www.science.oregonstate.edu/ocean.productivity/index.php, last access: 1 December 2012.
Sidorenko, D., Danilov, S., Wang, Q., Huerta-Casas, A., and Schröter, J.: On computing transports in finite-element models, Ocean Model., 28, 60–65, https://doi.org/10.1016/j.ocemod.2008.09.001, 2009.
Sidorenko, D., Wang, Q., Danilov, S., and Schröter, J.: FESOM under coordinated ocean-ice reference experiment forcing, Ocean Dynam., 61, 881–890, https://doi.org/10.1007/s10236-011-0406-7, 2011.
Siegel, D. A., Buesseler, K. O., Doney, S. C., Sailley, S. F., Behrenfeld, M. J., and Boyd, P. W.: Global assessment of ocean carbon export by combining satellite observations and food-web models, Global Biogeochem. Cy., 28, 181–196, https://doi.org/10.1002/2013GB004743, 2014.
Steele, M., Morley, R., and Ermold, W.: PHC: A global ocean hydrography with a high-quality Arctic Ocean, J. Climate, 14, 2079–2087, https://doi.org/10.1029/2006GL026152, 2001.
Steinacher, M., Joos, F., Frölicher, T. L., Bopp, L., Cadule, P., Cocco, V., Doney, S. C., Gehlen, M., Lindsay, K., Moore, J. K., Schneider, B., and Segschneider, J.: Projected 21st century decrease in marine productivity: a multi-model analysis, Biogeosciences, 7, 979–1005, https://doi.org/10.5194/bg-7-979-2010, 2010.
Sunda, W. G. and Huntsman, S. A.: Iron uptake and growth limitation in oceanic and coastal phytoplankton, Mar. Chem., 50, 189–206, https://doi.org/10.1016/0304-4203(95)00035-P, 1995.
Tagliabue, A., Bopp, L., and Aumont, O.: Evaluating the importance of atmospheric and sedimentary iron sources to Southern Ocean biogeochemistry, Geophys. Res. Lett., 36, L13601, https://doi.org/10.1029/2009GL038914, 2009.
Tagliabue, A., Mtshali, T., Aumont, O., Bowie, A. R., Klunder, M. B., Roychoudhury, A. N., and Swart, S.: A global compilation of dissolved iron measurements: focus on distributions and processes in the Southern Ocean, Biogeosciences, 9, 2333–2349, https://doi.org/10.5194/bg-9-2333-2012, 2012.
Tagliabue, A., Sallée, J.-B., Bowie, A. R., Lévy, M., Swart, S., and Boyd, P. W.: Surface-water iron supplies in the Southern Ocean sustained by deep winter mixing, Nat. Geosci., 7, 314–320, https://doi.org/10.1038/ngeo2101, 2014.
Taylor, K. E.: Summarizing multiple aspects of model performance in a single diagram, J. Geophys. Res., 106, 7183–7192, https://doi.org/10.1029/2000JD900719, 2001.
Taylor, M. H., Losch, M., and Bracher, A.: On the drivers of phytoplankton blooms in the Antarctic marginal ice zone: A modeling approach, J. Geophys. Res., 118, 63–75, https://doi.org/10.1029/2012JC008418, 2013.
Timmermann, R., Danilov, S., Schröter, J., Böning, C., Sidorenko, D., and Rollenhagen, K.: Ocean circulation and sea ice distribution in a finite element global sea ice–ocean model, Ocean Model., 27, 114–129, https://doi.org/10.1016/j.ocemod.2008.10.009, 2009.
Timmermann, R., Le Brocq, A. M., Deen, T., J., Domack, E. W., Dutrieux, P., Galton-Fenzi, B., Hellmer, H. H., Humbert, A., Jansen, D., Jenkins, A., Lambrecht, A., Makinson, K., Niederjasper, F., Nitsche, F.-O., Nøst, O. A., Smedsrud, L. H., and Smith, W.: Antarctic ice sheet topography, cavity geometry, and global bathymetry (RTopo 1.0.5-beta), https://doi.org/10.1594/PANGAEA.741917, 2010.
Vichi, M. and Masina, S.: Skill assessment of the PELAGOS global ocean biogeochemistry model over the period 1980–2000, Biogeosciences, 6, 2333–2353, https://doi.org/10.5194/bg-6-2333-2009, 2009.
Vogt, M., Hashioka, T., Payne, M. R., Buitenhuis, E. T., Quéré, C. Le, Alvain, S., Aita, M. N., Bopp, L., Doney, S. C., Hirata, T., Lima, I., Sailley, S., and Yamanaka, Y.: The distribution, dominance patterns and ecological niches of plankton functional types in Dynamic Green Ocean Models and satellite estimates, Biogeosciences Discuss., 10, 17193–17247, https://doi.org/10.5194/bgd-10-17193-2013, 2013.
Wadley, M. R., Jickells, T. D., and Heywood, K. J.: The role of iron sources and transport for Southern Ocean productivity, Deep-Sea Res. Pt. I, 87, 82–94, https://doi.org/10.1016/j.dsr.2014.02.003, 2014.
Wagener, T., Guieu, C., Losno, R., Bonnet, S., and Mahowald, N.: Revisiting atmospheric dust export to the Southern Hemisphere ocean: Biogeochemical implications, Global Biogeochem. Cy., 22, GB2006, https://doi.org/10.1029/2007GB002984, 2008.
Wang, Q., Danilov, S., and Schröter, J.: Finite element ocean circulation model based on triangular prismatic elements, with application in studying the effect of topography representation, J. Geophys. Res., 113, C05015, https://doi.org/10.1029/2007JC004482, 2008.
Wang, Q., Danilov, S., Sidorenko, D., Timmermann, R., Wekerle, C., Wang, X., Jung, T., and Schröter, J.: The Finite Element Sea Ice–Ocean Model (FESOM) v.1.4: formulation of an ocean general circulation model, Geosci. Model Dev., 7, 663–693, https://doi.org/10.5194/gmd-7-663-2014, 2014.
Wang, S., Bailey, D., Lindsay, K., Moore, J. K., and Holland, M.: Impact of sea ice on the marine iron cycle and phytoplankton productivity, Biogeosciences, 11, 4713–4731, https://doi.org/10.5194/bg-11-4713-2014, 2014.
Wanninkhof, R.: Relationship between wind speed and gas exchange over the ocean, J. Geophys. Res., 97, 7373–7382, https://doi.org/10.1029/92JC00188, 1992.
Wekerle, C., Wang, Q., Danilov, S., Jung, T., and Schröter, J.: The Canadian Arctic Archipelago throughflow in a multiresolution global model: model assessment and the driving mechanism of interannual variability, J. Geophys. Res., 118, 4525–4541, https://doi.org/10.1002/jgrc.20330, 2013.
Wilhelm, S. W., King, A. L., Twining, B. S., LeCleir, G. R., DeBruyn, J. M., Strzepek, R. F., Breene, C. L., Pickmere, S., Ellwood, M. J., Boyd, P. W., and Hutchins, D. A.: Elemental quotas and physiology of a southwestern Pacific Ocean plankton community as a function of iron availability, Aquat. Microb. Ecol., 68, 185–194, https://doi.org/10.3354/ame01611, 2013.
Wolf-Gladrow, D. A., Zeebe, R. E., Klaas, C., Körtzinger, A., and Dickson, A. G.: Total alkalinity: the explicit conservative expression and its application to biogeochemical processes, Mar. Chem., 106, 287–300, 2007.
Yamanaka, Y. and Tajika, E.: The role of the vertical fluxes of particulate organic matter and calcite in the oceanic carbon cycle: studies using an ocean biogeochemical general circulation model, Global Biogeochem. Cy., 10, 361–382, https://doi.org/10.1029/96GB00634, 1996.
Yool, A., Popova, E. E., and Anderson, T. R.: Medusa-1.0: a new intermediate complexity plankton ecosystem model for the global domain, Geosci. Model Dev., 4, 381–417, https://doi.org/10.5194/gmd-4-381-2011, 2011.
