Articles | Volume 19, issue 21
https://doi.org/10.5194/gmd-19-10321-2026
© Author(s) 2026. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-19-10321-2026
© Author(s) 2026. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Towards high-fidelity simulations of coastal submesoscale baroclinic instabilities with MPAS-O (vE3SM3.0.0) – Part 1: Idealized experiments
Pacific Northwest National Laboratory, Richland, WA, USA
Dylan R. Schlichting
Los Alamos National Laboratory, Los Alamos, NM, USA
Robert D. Hetland
Pacific Northwest National Laboratory, Richland, WA, USA
Darren Engwirda
Los Alamos National Laboratory, Los Alamos, NM, USA
Commonwealth Scientific and Industrial Research Organisation, Hobart, TAS, Australia
Katherine M. Smith
Los Alamos National Laboratory, Los Alamos, NM, USA
Mark R. Petersen
Los Alamos National Laboratory, Los Alamos, NM, USA
Kaila Uyeda
Department of Earth System Science, University of California Irvine, Irvine, CA, USA
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Dylan R. Schlichting, Katherine M. Smith, Mark R. Petersen, Robert D. Hetland, Kyle E. Hinson, and Darren Engwirda
Geosci. Model Dev., 19, 9627–9650, https://doi.org/10.5194/gmd-19-9627-2026, https://doi.org/10.5194/gmd-19-9627-2026, 2026
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River plumes can strongly influence coastal dynamics but are poorly resolved in global ocean models. Building on a companion study, we perform high-resolution simulations of the Mississippi–Atchafalaya (M–A) plume with the Model for Prediction Across Scales–Ocean (MPAS–O), a global model, and compare with a limited-domain Regional Ocean Modeling System configuration. MPAS–O qualitatively captures the M–A plume seasonality but fails to generate realistic eddies on the Texas–Louisiana shelf.
Kyle E. Hinson, Marjorie A. M. Friedrichs, Raymond G. Najjar, Maria Herrmann, Zihao Bian, Gopal Bhatt, Pierre St-Laurent, Hanqin Tian, and Gary Shenk
Biogeosciences, 20, 1937–1961, https://doi.org/10.5194/bg-20-1937-2023, https://doi.org/10.5194/bg-20-1937-2023, 2023
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Climate impacts are essential for environmental managers to consider when implementing nutrient reduction plans designed to reduce hypoxia. This work highlights relative sources of uncertainty in modeling regional climate impacts on the Chesapeake Bay watershed and consequent declines in bay oxygen levels. The results demonstrate that planned water quality improvement goals are capable of reducing hypoxia levels by half, offsetting climate-driven impacts on terrestrial runoff.
Dylan R. Schlichting, Katherine M. Smith, Mark R. Petersen, Robert D. Hetland, Kyle E. Hinson, and Darren Engwirda
Geosci. Model Dev., 19, 9627–9650, https://doi.org/10.5194/gmd-19-9627-2026, https://doi.org/10.5194/gmd-19-9627-2026, 2026
Short summary
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River plumes can strongly influence coastal dynamics but are poorly resolved in global ocean models. Building on a companion study, we perform high-resolution simulations of the Mississippi–Atchafalaya (M–A) plume with the Model for Prediction Across Scales–Ocean (MPAS–O), a global model, and compare with a limited-domain Regional Ocean Modeling System configuration. MPAS–O qualitatively captures the M–A plume seasonality but fails to generate realistic eddies on the Texas–Louisiana shelf.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 19, 5601–5622, https://doi.org/10.5194/gmd-19-5601-2026, https://doi.org/10.5194/gmd-19-5601-2026, 2026
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The parameters that control a model's behavior determine its ability to represent a system. In this work, multiple cases test how to estimate the parameters of a model with components corresponding to both the physics and the chemical and biological processes (i.e. the biogeochemistry) of the ocean. While demonstrating how to approach this problem type, the results show estimating both sets of parameters simultaneously is better than estimating the physics then the biogeochemistry separately.
Mark R. Petersen, Xylar S. Asay-Davis, Alice M. Barthel, Carolyn Branecky Begeman, Siddhartha Bishnu, Steven R. Brus, Philip W. Jones, Hyun-Gyu Kang, Youngsung Kim, Azamat Mametjanov, Brian J. O'Neill, James R. Overfelt, Kieran K. Ringel, Katherine M. Smith, Sarat Sreepathi, Luke P. Van Roekel, and Maciej Waruszewski
Geosci. Model Dev., 19, 3569–3594, https://doi.org/10.5194/gmd-19-3569-2026, https://doi.org/10.5194/gmd-19-3569-2026, 2026
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Ocean models are used to predict currents, temperature, and salinity of the earth's oceans, much like weather forecasting. As supercomputer hardware changes with evolving technology, models must be updated, and sometimes rewritten. Here we document Omega, a new ocean model that was designed to run on the world's fastest supercomputers. Testing shows that Omega accurately solves the model equations, and runs efficiently on many different computer architectures, including exascale computers.
Dongyu Feng, Zeli Tan, Darren Engwirda, Jonathan D. Wolfe, Donghui Xu, Chang Liao, Gautam Bisht, James J. Benedict, Tian Zhou, Mithun Deb, Hong-Yi Li, and L. Ruby Leung
Nat. Hazards Earth Syst. Sci., 25, 3619–3639, https://doi.org/10.5194/nhess-25-3619-2025, https://doi.org/10.5194/nhess-25-3619-2025, 2025
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Our study explores how riverine and coastal flooding during hurricanes is influenced by the interaction of atmosphere, land, river, and ocean conditions. Using an advanced Earth system model, we simulate Hurricane Irene to evaluate how meteorological and hydrological uncertainties affect flood modeling. Our findings reveal the importance of a multi-component modeling system, how hydrological conditions play critical roles in flood modeling, and greater flood risks if multiple factors are present.
Chang Liao, Darren Engwirda, Matthew G. Cooper, Mingke Li, and Yilin Fang
Earth Syst. Sci. Data, 17, 2035–2062, https://doi.org/10.5194/essd-17-2035-2025, https://doi.org/10.5194/essd-17-2035-2025, 2025
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Discrete global grid systems, or DGGS, are digital frameworks that help us organize information about our planet. Although scientists have used DGGS in areas like weather and nature, using them in the water cycle has been challenging because some core datasets are missing. We created a way to generate these datasets. We then developed the datasets in the Amazon and Yukon basins, which play important roles in our planet's climate. These datasets may help us improve our water cycle models.
Katherine M. Smith, Alice M. Barthel, LeAnn M. Conlon, Luke P. Van Roekel, Anthony Bartoletti, Jean-Christophe Golaz, Chengzhu Zhang, Carolyn Branecky Begeman, James J. Benedict, Gautam Bisht, Yan Feng, Walter Hannah, Bryce E. Harrop, Nicole Jeffery, Wuyin Lin, Po-Lun Ma, Mathew E. Maltrud, Mark R. Petersen, Balwinder Singh, Qi Tang, Teklu Tesfa, Jonathan D. Wolfe, Shaocheng Xie, Xue Zheng, Karthik Balaguru, Oluwayemi Garuba, Peter Gleckler, Aixue Hu, Jiwoo Lee, Ben Moore-Maley, and Ana C. Ordoñez
Geosci. Model Dev., 18, 1613–1633, https://doi.org/10.5194/gmd-18-1613-2025, https://doi.org/10.5194/gmd-18-1613-2025, 2025
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Version 2.1 of the U.S. Department of Energy's Energy Exascale Earth System Model (E3SM) adds the Fox-Kemper et al. (2011) mixed-layer eddy parameterization, which restratifies the ocean surface layer through an overturning streamfunction. Results include surface layer bias reduction in temperature, salinity, and sea ice extent in the North Atlantic; a small strengthening of the Atlantic meridional overturning circulation; and improvements to many atmospheric climatological variables.
Huilin Huang, Yun Qian, Gautam Bisht, Jiali Wang, Tirthankar Chakraborty, Dalei Hao, Jianfeng Li, Travis Thurber, Balwinder Singh, Zhao Yang, Ye Liu, Pengfei Xue, William J. Sacks, Ethan Coon, and Robert Hetland
Geosci. Model Dev., 18, 1427–1443, https://doi.org/10.5194/gmd-18-1427-2025, https://doi.org/10.5194/gmd-18-1427-2025, 2025
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We integrate the E3SM Land Model (ELM) with the WRF model through the Lightweight Infrastructure for Land Atmosphere Coupling (LILAC) Earth System Modeling Framework (ESMF). This framework includes a top-level driver, LILAC, for variable communication between WRF and ELM and ESMF caps for ELM initialization, execution, and finalization. The LILAC–ESMF framework maintains the integrity of the ELM's source code structure and facilitates the transfer of future ELM model developments to WRF-ELM.
Cara Nissen, Nicole S. Lovenduski, Mathew Maltrud, Alison R. Gray, Yohei Takano, Kristen Falcinelli, Jade Sauvé, and Katherine Smith
Geosci. Model Dev., 17, 6415–6435, https://doi.org/10.5194/gmd-17-6415-2024, https://doi.org/10.5194/gmd-17-6415-2024, 2024
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Autonomous profiling floats have provided unprecedented observational coverage of the global ocean, but uncertainties remain about whether their sampling frequency and density capture the true spatiotemporal variability of physical, biogeochemical, and biological properties. Here, we present the novel synthetic biogeochemical float capabilities of the Energy Exascale Earth System Model version 2 and demonstrate their utility as a test bed to address these uncertainties.
Mithun Deb, James J. Benedict, Ning Sun, Zhaoqing Yang, Robert D. Hetland, David Judi, and Taiping Wang
Nat. Hazards Earth Syst. Sci., 24, 2461–2479, https://doi.org/10.5194/nhess-24-2461-2024, https://doi.org/10.5194/nhess-24-2461-2024, 2024
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We coupled earth system, hydrology, and hydrodynamic models to generate plausible and physically consistent ensembles of hurricane events and their associated water levels from the open coast to tidal rivers of Delaware Bay and River. Our results show that the hurricane landfall locations and the estuarine wind can significantly amplify the extreme surge in a shallow and converging system, especially when the wind direction aligns with the surge propagation direction.
Sara Calandrini, Darren Engwirda, and Luke Van Roekel
EGUsphere, https://doi.org/10.5194/egusphere-2024-472, https://doi.org/10.5194/egusphere-2024-472, 2024
Preprint withdrawn
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Most modern ocean circulation models only consider the hydrostatic pressure, but for coastal phenomena nonhydrostatic effects become important, creating the need to include the nonhydrostatic pressure. In this work, we present a nonhydrostatic formulation for MPAS-Ocean (MPAS-O NH) and show its correctness on idealized benchmark test cases. MPAS-O NH is the first global nonhydrostatic model at variable resolution and is the first nonhydrostatic ocean model to be fully coupled in a climate model.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Siddhartha Bishnu, Robert R. Strauss, and Mark R. Petersen
Geosci. Model Dev., 16, 5539–5559, https://doi.org/10.5194/gmd-16-5539-2023, https://doi.org/10.5194/gmd-16-5539-2023, 2023
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Here we test Julia, a relatively new programming language, which is designed to be simple to write, but also fast on advanced computer architectures. We found that Julia is both convenient and fast, but there is no free lunch. Our first attempt to develop an ocean model in Julia was relatively easy, but the code was slow. After several months of further development, we created a Julia code that is as fast on supercomputers as a Fortran ocean model.
Kyle E. Hinson, Marjorie A. M. Friedrichs, Raymond G. Najjar, Maria Herrmann, Zihao Bian, Gopal Bhatt, Pierre St-Laurent, Hanqin Tian, and Gary Shenk
Biogeosciences, 20, 1937–1961, https://doi.org/10.5194/bg-20-1937-2023, https://doi.org/10.5194/bg-20-1937-2023, 2023
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Climate impacts are essential for environmental managers to consider when implementing nutrient reduction plans designed to reduce hypoxia. This work highlights relative sources of uncertainty in modeling regional climate impacts on the Chesapeake Bay watershed and consequent declines in bay oxygen levels. The results demonstrate that planned water quality improvement goals are capable of reducing hypoxia levels by half, offsetting climate-driven impacts on terrestrial runoff.
Nairita Pal, Kristin N. Barton, Mark R. Petersen, Steven R. Brus, Darren Engwirda, Brian K. Arbic, Andrew F. Roberts, Joannes J. Westerink, and Damrongsak Wirasaet
Geosci. Model Dev., 16, 1297–1314, https://doi.org/10.5194/gmd-16-1297-2023, https://doi.org/10.5194/gmd-16-1297-2023, 2023
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Understanding tides is essential to accurately predict ocean currents. Over the next several decades coastal processes such as flooding and erosion will be severely impacted due to climate change. Tides affect currents along the coastal regions the most. In this paper we show the results of implementing tides in a global ocean model known as MPAS–Ocean. We also show how Antarctic ice shelf cavities affect global tides. Our work points towards future research with tide–ice interactions.
Dongyu Feng, Zeli Tan, Darren Engwirda, Chang Liao, Donghui Xu, Gautam Bisht, Tian Zhou, Hong-Yi Li, and L. Ruby Leung
Hydrol. Earth Syst. Sci., 26, 5473–5491, https://doi.org/10.5194/hess-26-5473-2022, https://doi.org/10.5194/hess-26-5473-2022, 2022
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Sea level rise, storm surge and river discharge can cause coastal backwater effects in downstream sections of rivers, creating critical flood risks. This study simulates the backwater effects using a large-scale river model on a coastal-refined computational mesh. By decomposing the backwater drivers, we revealed their relative importance and long-term variations. Our analysis highlights the increasing strength of backwater effects due to sea level rise and more frequent storm surge.
Adrian K. Turner, William H. Lipscomb, Elizabeth C. Hunke, Douglas W. Jacobsen, Nicole Jeffery, Darren Engwirda, Todd D. Ringler, and Jonathan D. Wolfe
Geosci. Model Dev., 15, 3721–3751, https://doi.org/10.5194/gmd-15-3721-2022, https://doi.org/10.5194/gmd-15-3721-2022, 2022
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We present the dynamical core of the MPAS-Seaice model, which uses a mesh consisting of a Voronoi tessellation with polygonal cells. Such a mesh allows variable mesh resolution in different parts of the domain and the focusing of computational resources in regions of interest. We describe the velocity solver and tracer transport schemes used and examine errors generated by the model in both idealized and realistic test cases and examine the computational efficiency of the model.
Milena Veneziani, Wieslaw Maslowski, Younjoo J. Lee, Gennaro D'Angelo, Robert Osinski, Mark R. Petersen, Wilbert Weijer, Anthony P. Craig, John D. Wolfe, Darin Comeau, and Adrian K. Turner
Geosci. Model Dev., 15, 3133–3160, https://doi.org/10.5194/gmd-15-3133-2022, https://doi.org/10.5194/gmd-15-3133-2022, 2022
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We present an Earth system model (ESM) simulation, E3SM-Arctic-OSI, with a refined grid to better resolve the Arctic ocean and sea-ice system and low spatial resolution elsewhere. The configuration satisfactorily represents many aspects of the Arctic system and its interactions with the sub-Arctic, while keeping computational costs at a fraction of those necessary for global high-resolution ESMs. E3SM-Arctic can thus be an efficient tool to study Arctic processes on climate-relevant timescales.
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Short summary
Physical dynamics of ocean flows at fine spatial scales are challenging for regional and global scale ocean models due to high computational effort associated with smaller grid cell sizes. We compared two ocean models: a regional model (ROMS; Regional Ocean Modeling System) and global model (MPAS-O; Model for Prediction Across Scales – Ocean) across a range of resolutions (10 km to 100 m) in an idealized domain, and found that their similarities may hold promise for future coupling between them.
Physical dynamics of ocean flows at fine spatial scales are challenging for regional and global...
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