Articles | Volume 15, issue 14
Geosci. Model Dev., 15, 5567–5592, 2022
https://doi.org/10.5194/gmd-15-5567-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Special issue: Joint UK Land Environment Simulator (JULES) – configurations,...
Geosci. Model Dev., 15, 5567–5592, 2022
https://doi.org/10.5194/gmd-15-5567-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
20 Jul 2022
Development and technical paper
| 20 Jul 2022
Improved representation of plant physiology in the JULES-vn5.6 land surface model: photosynthesis, stomatal conductance and thermal acclimation
Rebecca J. Oliver et al.
Related authors
Emma W. Littleton, Anna B. Harper, Naomi E. Vaughan, Rebecca J. Oliver, Maria Carolina Duran-Rojas, and Timothy M. Lenton
Geosci. Model Dev., 13, 1123–1136, https://doi.org/10.5194/gmd-13-1123-2020, https://doi.org/10.5194/gmd-13-1123-2020, 2020
Short summary
Short summary
This study presents new functionality to represent bioenergy crops and harvests in JULES, a land surface model. Such processes must be explicitly represented before the environmental effects of large-scale bioenergy production can be fully evaluated, using Earth system modelling. This new functionality allows for many types of bioenergy plants and harvesting regimes to be simulated, such as perennial grasses, short rotation coppicing, and forestry rotations.
Chris Huntingford, Rebecca J. Oliver, Lina M. Mercado, and Stephen Sitch
Biogeosciences, 15, 5415–5422, https://doi.org/10.5194/bg-15-5415-2018, https://doi.org/10.5194/bg-15-5415-2018, 2018
Short summary
Short summary
Raised ozone levels impact plant stomatal opening and thus photosynthesis. Most models describe this as a suppression of stomata opening. Field evidence suggests more complexity, as ozone damage may make stomatal response
sluggish. In some circumstances, this causes stomata to be more open – a concern during drought conditions – by increasing transpiration. To guide interpretation and modelling of field measurements, we present an equation for sluggish effects, via a single tau parameter.
Rebecca J. Oliver, Lina M. Mercado, Stephen Sitch, David Simpson, Belinda E. Medlyn, Yan-Shih Lin, and Gerd A. Folberth
Biogeosciences, 15, 4245–4269, https://doi.org/10.5194/bg-15-4245-2018, https://doi.org/10.5194/bg-15-4245-2018, 2018
Short summary
Short summary
Potential gains in terrestrial carbon sequestration over Europe from elevated CO2 can be partially offset by concurrent rises in tropospheric O3. The land surface model JULES was run in a factorial suite of experiments showing that by 2050 simulated GPP was reduced by 4 to 9 % due to plant O3 damage. Large regional variations exist with larger impacts identified for temperate compared to boreal regions. Plant O3 damage was greatest over the twentieth century and declined into the future.
E. M. Blyth, R. Oliver, and N. Gedney
Biogeosciences Discuss., https://doi.org/10.5194/bgd-11-17967-2014, https://doi.org/10.5194/bgd-11-17967-2014, 2014
Revised manuscript has not been submitted
Short summary
Short summary
By studying patterns of soil carbon in the Northern Latitudes alongside vegetation, soil temperatures and wetlands, it is apparent that the main cause of high values of soil carbon is the presence of saturated soils (wetlands). This link can only be modelled if the wetlands are assumed to completely suppress soil respiration. It is important to be able to model wetlands and their effect on soil carbon if we are to understand the long term future of the soil-carbon store in Northern Latitudes.
Thibault Hallouin, Richard J. Ellis, Douglas B. Clark, Simon J. Dadson, Andrew G. Hughes, Bryan N. Lawrence, Grenville M. S. Lister, and Jan Polcher
Geosci. Model Dev., 15, 9177–9196, https://doi.org/10.5194/gmd-15-9177-2022, https://doi.org/10.5194/gmd-15-9177-2022, 2022
Short summary
Short summary
A new framework for modelling the water cycle in the land system has been implemented. It considers the hydrological cycle as three interconnected components, bringing flexibility in the choice of the physical processes and their spatio-temporal resolutions. It is designed to foster collaborations between land surface, hydrological, and groundwater modelling communities to develop the next-generation of land system models for integration in Earth system models.
Keirnan Fowler, Murray Peel, Margarita Saft, Tim J. Peterson, Andrew Western, Lawrence Band, Cuan Petheram, Sandra Dharmadi, Kim Seong Tan, Lu Zhang, Patrick Lane, Anthony Kiem, Lucy Marshall, Anne Griebel, Belinda E. Medlyn, Dongryeol Ryu, Giancarlo Bonotto, Conrad Wasko, Anna Ukkola, Clare Stephens, Andrew Frost, Hansini Gardiya Weligamage, Patricia Saco, Hongxing Zheng, Francis Chiew, Edoardo Daly, Glen Walker, R. Willem Vervoort, Justin Hughes, Luca Trotter, Brad Neal, Ian Cartwright, and Rory Nathan
Hydrol. Earth Syst. Sci., 26, 6073–6120, https://doi.org/10.5194/hess-26-6073-2022, https://doi.org/10.5194/hess-26-6073-2022, 2022
Short summary
Short summary
Recently, we have seen multi-year droughts tending to cause shifts in the relationship between rainfall and streamflow. In shifted catchments that have not recovered, an average rainfall year produces less streamflow today than it did pre-drought. We take a multi-disciplinary approach to understand why these shifts occur, focusing on Australia's over-10-year Millennium Drought. We evaluate multiple hypotheses against evidence, with particular focus on the key role of groundwater processes.
Rafaela Jane Delfino, Gerry Bagtasa, Kevin Hodges, and Pier Luigi Vidale
Nat. Hazards Earth Syst. Sci., 22, 3285–3307, https://doi.org/10.5194/nhess-22-3285-2022, https://doi.org/10.5194/nhess-22-3285-2022, 2022
Short summary
Short summary
We showed the effects of altering the choice of cumulus schemes, surface flux options, and spectral nudging with a high level of sensitivity to cumulus schemes in simulating an intense typhoon. We highlight the advantage of using an ensemble of cumulus parameterizations to take into account the uncertainty in simulating typhoons such as Haiyan in 2013. This study is useful in addressing the growing need to plan and prepare for as well as reduce the impacts of intense typhoons in the Philippines.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
Short summary
Short summary
Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Louise J. Slater, Chris Huntingford, Richard F. Pywell, John W. Redhead, and Elizabeth J. Kendon
Earth Syst. Dynam., 13, 1377–1396, https://doi.org/10.5194/esd-13-1377-2022, https://doi.org/10.5194/esd-13-1377-2022, 2022
Short summary
Short summary
This work considers how wheat yields are affected by weather conditions during the three main wheat growth stages in the UK. Impacts are strongest in years with compound weather extremes across multiple growth stages. Future climate projections are beneficial for wheat yields, on average, but indicate a high risk of unseen weather conditions which farmers may struggle to adapt to and mitigate against.
Flossie Brown, Gerd A. Folberth, Stephen Sitch, Susanne Bauer, Marijn Bauters, Pascal Boeckx, Alexander W. Cheesman, Makoto Deushi, Inês Dos Santos Vieira, Corinne Galy-Lacaux, James Haywood, James Keeble, Lina M. Mercado, Fiona M. O'Connor, Naga Oshima, Kostas Tsigaridis, and Hans Verbeeck
Atmos. Chem. Phys., 22, 12331–12352, https://doi.org/10.5194/acp-22-12331-2022, https://doi.org/10.5194/acp-22-12331-2022, 2022
Short summary
Short summary
Surface ozone can decrease plant productivity and impair human health. In this study, we evaluate the change in surface ozone due to climate change over South America and Africa using Earth system models. We find that if the climate were to change according to the worst-case scenario used here, models predict that forested areas in biomass burning locations and urban populations will be at increasing risk of ozone exposure, but other areas will experience a climate benefit.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander Cheesman, Yansen Xu, and Maria Duran Rojas
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2022-227, https://doi.org/10.5194/gmd-2022-227, 2022
Preprint under review for GMD
Short summary
Short summary
Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained, neither fully implemented in large scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Chris Huntingford, Peter M. Cox, Mark S. Williamson, Joseph J. Clarke, and Paul D. L. Ritchie
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2022-43, https://doi.org/10.5194/esd-2022-43, 2022
Preprint under review for ESD
Short summary
Short summary
Emergent Constraints (ECs) reduce the spread of projections between climate models. ECs estimate changes to climate features impacting adaptation policy, and with this high profile, the method is under scrutiny. Asking “What is an EC?”, we suggest they are often the discovery of parameters that characterise hidden large-scale equations that climate models solve implicitly. We present this conceptually via two examples. Our analysis implies possible new paths to link ECs and physical processes.
Julia Crook, Cornelia Klein, Sonja Folwell, Christopher M. Taylor, Douglas J. Parker, Adama Bamba, and Kouakou Kouadio
Weather Clim. Dynam. Discuss., https://doi.org/10.5194/wcd-2022-49, https://doi.org/10.5194/wcd-2022-49, 2022
Preprint under review for WCD
Short summary
Short summary
This is the first study to analyze the impact of realistic historical deforestation in West Africa using a model that does not rely on parameterization of convection. Unlike previous studies, we find rainfall increases from 18:00 to 6:00 with changes driven by changes in mesoscale circulations, in line with observations in the region. This shows the potential for future studies using similar models to examine the impact of realistic deforestation in West Africa on multi-annual time scales.
Mahdi André Nakhavali, Lina M. Mercado, Iain P. Hartley, Stephen Sitch, Fernanda V. Cunha, Raffaello di Ponzio, Laynara F. Lugli, Carlos A. Quesada, Kelly M. Andersen, Sarah E. Chadburn, Andy J. Wiltshire, Douglas B. Clark, Gyovanni Ribeiro, Lara Siebert, Anna C. M. Moraes, Jéssica Schmeisk Rosa, Rafael Assis, and José L. Camargo
Geosci. Model Dev., 15, 5241–5269, https://doi.org/10.5194/gmd-15-5241-2022, https://doi.org/10.5194/gmd-15-5241-2022, 2022
Short summary
Short summary
In tropical ecosystems, the availability of rock-derived elements such as P can be very low. Thus, without a representation of P cycling, tropical forest responses to rising atmospheric CO2 conditions in areas such as Amazonia remain highly uncertain. We introduced P dynamics and its interactions with the N and P cycles into the JULES model. Our results highlight the potential for high P limitation and therefore lower CO2 fertilization capacity in the Amazon forest with low-fertility soils.
Gang Liu, Shushi Peng, Chris Huntingford, and Yi Xi
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2022-144, https://doi.org/10.5194/gmd-2022-144, 2022
Revised manuscript accepted for GMD
Short summary
Short summary
Due to computational limits, lower complexity models (LCMs) were developed as complementary tool for accelerating comprehensive earth system models (ESMs), but still lack good precipitation emulator for LCMs. Here, we developed a data-calibrated precipitation emulator (PREMU), a computationally effective way to better estimate historical and simulated precipitation by current ESMs. PREMU has potential applications related to land surface processes, and their interactions with climate change.
Toby R. Marthews, Simon J. Dadson, Douglas B. Clark, Eleanor M. Blyth, Garry D. Hayman, Dai Yamazaki, Olivia R. E. Becher, Alberto Martínez-de la Torre, Catherine Prigent, and Carlos Jiménez
Hydrol. Earth Syst. Sci., 26, 3151–3175, https://doi.org/10.5194/hess-26-3151-2022, https://doi.org/10.5194/hess-26-3151-2022, 2022
Short summary
Short summary
Reliable data on global inundated areas remain uncertain. By matching a leading global data product on inundation extents (GIEMS) against predictions from a global hydrodynamic model (CaMa-Flood), we found small but consistent and non-random biases in well-known tropical wetlands (Sudd, Pantanal, Amazon and Congo). These result from known limitations in the data and the models used, which shows us how to improve our ability to make critical predictions of inundation events in the future.
Juan Manuel Castillo, Huw W. Lewis, Akhilesh Mishra, Ashis Mitra, Jeff Polton, Ashley Brereton, Andrew Saulter, Alex Arnold, Segolene Berthou, Douglas Clark, Julia Crook, Ananda Das, John Edwards, Xiangbo Feng, Ankur Gupta, Sudheer Joseph, Nicholas Klingaman, Imranali Momin, Christine Pequignet, Claudio Sanchez, Jennifer Saxby, and Maria Valdivieso da Costa
Geosci. Model Dev., 15, 4193–4223, https://doi.org/10.5194/gmd-15-4193-2022, https://doi.org/10.5194/gmd-15-4193-2022, 2022
Short summary
Short summary
A new environmental modelling system has been developed to represent the effect of feedbacks between atmosphere, land, and ocean in the Indian region. Different approaches to simulating tropical cyclones Titli and Fani are demonstrated. It is shown that results are sensitive to the way in which the ocean response to cyclone evolution is captured in the system. Notably, we show how a more rigorous formulation for the near-surface energy budget can be included when air–sea coupling is included.
Ambrogio Volonté, Andrew G. Turner, Reinhard Schiemann, Pier Luigi Vidale, and Nicholas P. Klingaman
Weather Clim. Dynam., 3, 575–599, https://doi.org/10.5194/wcd-3-575-2022, https://doi.org/10.5194/wcd-3-575-2022, 2022
Short summary
Short summary
In this study we analyse the complex seasonal evolution of the East Asian summer monsoon. Using reanalysis data, we show the importance of the interaction between tropical and extratropical air masses converging at the monsoon front, particularly during its northward progression. The upper-level flow pattern (e.g. the westerly jet) controls the balance between the airstreams and thus the associated rainfall. This framework provides a basis for studies of extreme events and climate variability.
Pierre Friedlingstein, Matthew W. Jones, Michael O'Sullivan, Robbie M. Andrew, Dorothee C. E. Bakker, Judith Hauck, Corinne Le Quéré, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Josep G. Canadell, Philippe Ciais, Rob B. Jackson, Simone R. Alin, Peter Anthoni, Nicholas R. Bates, Meike Becker, Nicolas Bellouin, Laurent Bopp, Thi Tuyet Trang Chau, Frédéric Chevallier, Louise P. Chini, Margot Cronin, Kim I. Currie, Bertrand Decharme, Laique M. Djeutchouang, Xinyu Dou, Wiley Evans, Richard A. Feely, Liang Feng, Thomas Gasser, Dennis Gilfillan, Thanos Gkritzalis, Giacomo Grassi, Luke Gregor, Nicolas Gruber, Özgür Gürses, Ian Harris, Richard A. Houghton, George C. Hurtt, Yosuke Iida, Tatiana Ilyina, Ingrid T. Luijkx, Atul Jain, Steve D. Jones, Etsushi Kato, Daniel Kennedy, Kees Klein Goldewijk, Jürgen Knauer, Jan Ivar Korsbakken, Arne Körtzinger, Peter Landschützer, Siv K. Lauvset, Nathalie Lefèvre, Sebastian Lienert, Junjie Liu, Gregg Marland, Patrick C. McGuire, Joe R. Melton, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Yosuke Niwa, Tsuneo Ono, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Thais M. Rosan, Jörg Schwinger, Clemens Schwingshackl, Roland Séférian, Adrienne J. Sutton, Colm Sweeney, Toste Tanhua, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco Tubiello, Guido R. van der Werf, Nicolas Vuichard, Chisato Wada, Rik Wanninkhof, Andrew J. Watson, David Willis, Andrew J. Wiltshire, Wenping Yuan, Chao Yue, Xu Yue, Sönke Zaehle, and Jiye Zeng
Earth Syst. Sci. Data, 14, 1917–2005, https://doi.org/10.5194/essd-14-1917-2022, https://doi.org/10.5194/essd-14-1917-2022, 2022
Short summary
Short summary
The Global Carbon Budget 2021 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Mathilda Hancock, Stephen Sitch, Fabian Jörg Fischer, Jérôme Chave, Michael O'Sullivan, Dominic Fawcett, and Lina María Mercado
Biogeosciences Discuss., https://doi.org/10.5194/bg-2022-87, https://doi.org/10.5194/bg-2022-87, 2022
Publication in BG not foreseen
Short summary
Short summary
Global vegetation models often underestimate the spatial variability of carbon stored in the Amazon forest. This paper demonstrates that including spatially varying tree mortality rates, as opposed to a homogeneous rate, in one model, significantly improves its simulations of the forest carbon store. To overcome the limited resolution of tree mortality data, this research presents a simple method of calculating mortality rates across Amazonia using a dependence on wood density.
Chandan Sarangi, TC Chakraborty, Sachchidanand Tripathi, Mithun Krishnan, Ross Morrison, Jonathan Evans, and Lina M. Mercado
Atmos. Chem. Phys., 22, 3615–3629, https://doi.org/10.5194/acp-22-3615-2022, https://doi.org/10.5194/acp-22-3615-2022, 2022
Short summary
Short summary
Transpiration fluxes by vegetation are reduced under heat stress to conserve water. However, in situ observations over northern India show that the strength of the inverse association between transpiration and atmospheric vapor pressure deficit is weakening in the presence of heavy aerosol loading. This finding not only implicates the significant role of aerosols in modifying the evaporative fraction (EF) but also warrants an in-depth analysis of the aerosol–plant–temperature–EF continuum.
Sami W. Rifai, Martin G. De Kauwe, Anna M. Ukkola, Lucas A. Cernusak, Patrick Meir, Belinda E. Medlyn, and Andy J. Pitman
Biogeosciences, 19, 491–515, https://doi.org/10.5194/bg-19-491-2022, https://doi.org/10.5194/bg-19-491-2022, 2022
Short summary
Short summary
Australia's woody ecosystems have experienced widespread greening despite a warming climate and repeated record-breaking droughts and heat waves. Increasing atmospheric CO2 increases plant water use efficiency, yet quantifying the CO2 effect is complicated due to co-occurring effects of global change. Here we harmonized a 38-year satellite record to separate the effects of climate change, land use change, and disturbance to quantify the CO2 fertilization effect on the greening phenomenon.
Eduardo Moreno-Chamarro, Louis-Philippe Caron, Saskia Loosveldt Tomas, Javier Vegas-Regidor, Oliver Gutjahr, Marie-Pierre Moine, Dian Putrasahan, Christopher D. Roberts, Malcolm J. Roberts, Retish Senan, Laurent Terray, Etienne Tourigny, and Pier Luigi Vidale
Geosci. Model Dev., 15, 269–289, https://doi.org/10.5194/gmd-15-269-2022, https://doi.org/10.5194/gmd-15-269-2022, 2022
Short summary
Short summary
Climate models do not fully reproduce observations: they show differences (biases) in regional temperature, precipitation, or cloud cover. Reducing model biases is important to increase our confidence in their ability to reproduce present and future climate changes. Model realism is set by its resolution: the finer it is, the more physical processes and interactions it can resolve. We here show that increasing resolution of up to ~ 25 km can help reduce model biases but not remove them entirely.
Mark R. Muetzelfeldt, Reinhard Schiemann, Andrew G. Turner, Nicholas P. Klingaman, Pier Luigi Vidale, and Malcolm J. Roberts
Hydrol. Earth Syst. Sci., 25, 6381–6405, https://doi.org/10.5194/hess-25-6381-2021, https://doi.org/10.5194/hess-25-6381-2021, 2021
Short summary
Short summary
Simulating East Asian Summer Monsoon (EASM) rainfall poses many challenges because of its multi-scale nature. We evaluate three setups of a 14 km global climate model against observations to see if they improve simulated rainfall. We do this over catchment basins of different sizes to estimate how model performance depends on spatial scale. Using explicit convection improves rainfall diurnal cycle, yet more model tuning is needed to improve mean and intensity biases in simulated summer rainfall.
Lina Teckentrup, Martin G. De Kauwe, Andrew J. Pitman, Daniel S. Goll, Vanessa Haverd, Atul K. Jain, Emilie Joetzjer, Etsushi Kato, Sebastian Lienert, Danica Lombardozzi, Patrick C. McGuire, Joe R. Melton, Julia E. M. S. Nabel, Julia Pongratz, Stephen Sitch, Anthony P. Walker, and Sönke Zaehle
Biogeosciences, 18, 5639–5668, https://doi.org/10.5194/bg-18-5639-2021, https://doi.org/10.5194/bg-18-5639-2021, 2021
Short summary
Short summary
The Australian continent is included in global assessments of the carbon cycle such as the global carbon budget, yet the performance of dynamic global vegetation models (DGVMs) over Australia has rarely been evaluated. We assessed simulations by an ensemble of dynamic global vegetation models over Australia and highlighted a number of key areas that lead to model divergence on both short (inter-annual) and long (decadal) timescales.
Ana Bastos, René Orth, Markus Reichstein, Philippe Ciais, Nicolas Viovy, Sönke Zaehle, Peter Anthoni, Almut Arneth, Pierre Gentine, Emilie Joetzjer, Sebastian Lienert, Tammas Loughran, Patrick C. McGuire, Sungmin O, Julia Pongratz, and Stephen Sitch
Earth Syst. Dynam., 12, 1015–1035, https://doi.org/10.5194/esd-12-1015-2021, https://doi.org/10.5194/esd-12-1015-2021, 2021
Short summary
Short summary
Temperate biomes in Europe are not prone to recurrent dry and hot conditions in summer. However, these conditions may become more frequent in the coming decades. Because stress conditions can leave legacies for many years, this may result in reduced ecosystem resilience under recurrent stress. We assess vegetation vulnerability to the hot and dry summers in 2018 and 2019 in Europe and find the important role of inter-annual legacy effects from 2018 in modulating the impacts of the 2019 event.
Gabriel M. P. Perez, Pier Luigi Vidale, Nicholas P. Klingaman, and Thomas C. M. Martin
Weather Clim. Dynam., 2, 475–488, https://doi.org/10.5194/wcd-2-475-2021, https://doi.org/10.5194/wcd-2-475-2021, 2021
Short summary
Short summary
Much of the rainfall in tropical regions comes from organised cloud bands called convergence zones (CZs). These bands have hundreds of kilometers. In South America (SA), they cause intense rain for long periods of time. To study these systems, we need to define and identify them with computer code. We propose a definition of CZs based on the the pathways of air, selecting regions where air masses originated in separated regions meet. This method identifies important mechanisms of rain in SA.
Anna B. Harper, Karina E. Williams, Patrick C. McGuire, Maria Carolina Duran Rojas, Debbie Hemming, Anne Verhoef, Chris Huntingford, Lucy Rowland, Toby Marthews, Cleiton Breder Eller, Camilla Mathison, Rodolfo L. B. Nobrega, Nicola Gedney, Pier Luigi Vidale, Fred Otu-Larbi, Divya Pandey, Sebastien Garrigues, Azin Wright, Darren Slevin, Martin G. De Kauwe, Eleanor Blyth, Jonas Ardö, Andrew Black, Damien Bonal, Nina Buchmann, Benoit Burban, Kathrin Fuchs, Agnès de Grandcourt, Ivan Mammarella, Lutz Merbold, Leonardo Montagnani, Yann Nouvellon, Natalia Restrepo-Coupe, and Georg Wohlfahrt
Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, https://doi.org/10.5194/gmd-14-3269-2021, 2021
Short summary
Short summary
We evaluated 10 representations of soil moisture stress in the JULES land surface model against site observations of GPP and latent heat flux. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES. In addition, using soil matric potential presents the opportunity to include parameters specific to plant functional type to further improve modeled fluxes.
Wolfgang A. Obermeier, Julia E. M. S. Nabel, Tammas Loughran, Kerstin Hartung, Ana Bastos, Felix Havermann, Peter Anthoni, Almut Arneth, Daniel S. Goll, Sebastian Lienert, Danica Lombardozzi, Sebastiaan Luyssaert, Patrick C. McGuire, Joe R. Melton, Benjamin Poulter, Stephen Sitch, Michael O. Sullivan, Hanqin Tian, Anthony P. Walker, Andrew J. Wiltshire, Soenke Zaehle, and Julia Pongratz
Earth Syst. Dynam., 12, 635–670, https://doi.org/10.5194/esd-12-635-2021, https://doi.org/10.5194/esd-12-635-2021, 2021
Short summary
Short summary
We provide the first spatio-temporally explicit comparison of different model-derived fluxes from land use and land cover changes (fLULCCs) by using the TRENDY v8 dynamic global vegetation models used in the 2019 global carbon budget. We find huge regional fLULCC differences resulting from environmental assumptions, simulated periods, and the timing of land use and land cover changes, and we argue for a method consistent across time and space and for carefully choosing the accounting period.
Garry D. Hayman, Edward Comyn-Platt, Chris Huntingford, Anna B. Harper, Tom Powell, Peter M. Cox, William Collins, Christopher Webber, Jason Lowe, Stephen Sitch, Joanna I. House, Jonathan C. Doelman, Detlef P. van Vuuren, Sarah E. Chadburn, Eleanor Burke, and Nicola Gedney
Earth Syst. Dynam., 12, 513–544, https://doi.org/10.5194/esd-12-513-2021, https://doi.org/10.5194/esd-12-513-2021, 2021
Short summary
Short summary
We model greenhouse gas emission scenarios consistent with limiting global warming to either 1.5 or 2 °C above pre-industrial levels. We quantify the effectiveness of methane emission control and land-based mitigation options regionally. Our results highlight the importance of reducing methane emissions for realistic emission pathways that meet the global warming targets. For land-based mitigation, growing bioenergy crops on existing agricultural land is preferable to replacing forests.
Zichong Chen, Junjie Liu, Daven K. Henze, Deborah N. Huntzinger, Kelley C. Wells, Stephen Sitch, Pierre Friedlingstein, Emilie Joetzjer, Vladislav Bastrikov, Daniel S. Goll, Vanessa Haverd, Atul K. Jain, Etsushi Kato, Sebastian Lienert, Danica L. Lombardozzi, Patrick C. McGuire, Joe R. Melton, Julia E. M. S. Nabel, Benjamin Poulter, Hanqin Tian, Andrew J. Wiltshire, Sönke Zaehle, and Scot M. Miller
Atmos. Chem. Phys., 21, 6663–6680, https://doi.org/10.5194/acp-21-6663-2021, https://doi.org/10.5194/acp-21-6663-2021, 2021
Short summary
Short summary
NASA's Orbiting Carbon Observatory 2 (OCO-2) satellite observes atmospheric CO2 globally. We use a multiple regression and inverse model to quantify the relationships between OCO-2 and environmental drivers within individual years for 2015–2018 and within seven global biomes. Our results point to limitations of current space-based observations for inferring environmental relationships but also indicate the potential to inform key relationships that are very uncertain in process-based models.
Simon J. Dadson, Eleanor Blyth, Douglas Clark, Helen Davies, Richard Ellis, Huw Lewis, Toby Marthews, and Ponnambalan Rameshwaran
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2021-60, https://doi.org/10.5194/hess-2021-60, 2021
Manuscript not accepted for further review
Short summary
Short summary
Flood prediction helps national and regional planning and real-time flood response. In this study we apply and test a new way to make wide area predictions of flooding which can be combined with weather forecasting and climate models to give faster predictions of flooded areas. By simplifying the detailed floodplain topography we can keep track of the fraction of land flooded for hazard mapping purposes. When tested this approach accurately reproduces benchmark datasets for England.
Douglas I. Kelley, Chantelle Burton, Chris Huntingford, Megan A. J. Brown, Rhys Whitley, and Ning Dong
Biogeosciences, 18, 787–804, https://doi.org/10.5194/bg-18-787-2021, https://doi.org/10.5194/bg-18-787-2021, 2021
Short summary
Short summary
Initial evidence suggests human ignitions or landscape changes caused most Amazon fires during August 2019. However, confirmation is needed that meteorological conditions did not have a substantial role. Assessing the influence of historical weather on burning in an uncertainty framework, we find that 2019 meteorological conditions alone should have resulted in much less fire than observed. We conclude socio-economic factors likely had a strong role in the high recorded 2019 fire activity.
Mengyuan Mu, Martin G. De Kauwe, Anna M. Ukkola, Andy J. Pitman, Teresa E. Gimeno, Belinda E. Medlyn, Dani Or, Jinyan Yang, and David S. Ellsworth
Hydrol. Earth Syst. Sci., 25, 447–471, https://doi.org/10.5194/hess-25-447-2021, https://doi.org/10.5194/hess-25-447-2021, 2021
Short summary
Short summary
Land surface model (LSM) is a critical tool to study land responses to droughts and heatwaves, but lacking comprehensive observations limited past model evaluations. Here we use a novel dataset at a water-limited site, evaluate a typical LSM with a range of competing model hypotheses widely used in LSMs and identify marked uncertainty due to the differing process assumptions. We show the extensive observations constrain model processes and allow better simulated land responses to these extremes.
Liang Guo, Ruud J. van der Ent, Nicholas P. Klingaman, Marie-Estelle Demory, Pier Luigi Vidale, Andrew G. Turner, Claudia C. Stephan, and Amulya Chevuturi
Geosci. Model Dev., 13, 6011–6028, https://doi.org/10.5194/gmd-13-6011-2020, https://doi.org/10.5194/gmd-13-6011-2020, 2020
Short summary
Short summary
Precipitation over East Asia simulated in the Met Office Unified Model is compared with observations. Moisture sources of EA precipitation are traced using a moisture tracking model. Biases in moisture sources are linked to biases in precipitation. Using the tracking model, changes in moisture sources can be attributed to changes in SST, circulation and associated evaporation. This proves that the method used in this study is useful to identify the causes of biases in regional precipitation.
Arthur P. K. Argles, Jonathan R. Moore, Chris Huntingford, Andrew J. Wiltshire, Anna B. Harper, Chris D. Jones, and Peter M. Cox
Geosci. Model Dev., 13, 4067–4089, https://doi.org/10.5194/gmd-13-4067-2020, https://doi.org/10.5194/gmd-13-4067-2020, 2020
Short summary
Short summary
The Robust Ecosystem Demography (RED) model simulates cohorts of vegetation through mass classes. RED establishes a framework for representing demographic changes through competition, growth, and mortality across the size distribution of a forest. The steady state of the model can be solved analytically, enabling initialization. When driven by mean growth rates from a land-surface model, RED is able to fit the observed global vegetation map, giving a map of implicit mortality rates.
Reinhard Schiemann, Panos Athanasiadis, David Barriopedro, Francisco Doblas-Reyes, Katja Lohmann, Malcolm J. Roberts, Dmitry V. Sein, Christopher D. Roberts, Laurent Terray, and Pier Luigi Vidale
Weather Clim. Dynam., 1, 277–292, https://doi.org/10.5194/wcd-1-277-2020, https://doi.org/10.5194/wcd-1-277-2020, 2020
Short summary
Short summary
In blocking situations the westerly atmospheric flow in the midlatitudes is blocked by near-stationary high-pressure systems. Blocking can be associated with extremes such as cold spells and heat waves. Climate models are known to underestimate blocking occurrence. Here, we assess the latest generation of models and find improvements in simulated blocking, partly due to increases in model resolution. These new models are therefore more suitable for studying climate extremes related to blocking.
Emma L. Robinson and Douglas B. Clark
Hydrol. Earth Syst. Sci., 24, 1763–1779, https://doi.org/10.5194/hess-24-1763-2020, https://doi.org/10.5194/hess-24-1763-2020, 2020
Short summary
Short summary
This study used a water balance approach based on GRACE total water storage to infer the amount of cold-season precipitation in four Arctic river basins. This was used to evaluate four gridded meteorological data sets, which were used as inputs to a land surface model. We found that the cold-season precipitation in these data sets needed to be increased by up to 55 %. Using these higher precipitation inputs improved the model representation of Arctic hydrology, particularly lying snow.
Emma W. Littleton, Anna B. Harper, Naomi E. Vaughan, Rebecca J. Oliver, Maria Carolina Duran-Rojas, and Timothy M. Lenton
Geosci. Model Dev., 13, 1123–1136, https://doi.org/10.5194/gmd-13-1123-2020, https://doi.org/10.5194/gmd-13-1123-2020, 2020
Short summary
Short summary
This study presents new functionality to represent bioenergy crops and harvests in JULES, a land surface model. Such processes must be explicitly represented before the environmental effects of large-scale bioenergy production can be fully evaluated, using Earth system modelling. This new functionality allows for many types of bioenergy plants and harvesting regimes to be simulated, such as perennial grasses, short rotation coppicing, and forestry rotations.
Jonathan R. Moore, Arthur P. K. Argles, Kai Zhu, Chris Huntingford, and Peter M. Cox
Biogeosciences, 17, 1013–1032, https://doi.org/10.5194/bg-17-1013-2020, https://doi.org/10.5194/bg-17-1013-2020, 2020
Short summary
Short summary
The distribution of tree sizes across Amazonia can be fitted very well (for both trunk diameter and tree mass) by a simple equilibrium model assuming power law growth and size-independent mortality. We find tree growth to mirror some aspects of metabolic scaling theory and that there may be a trade-off between fast-growing, short-lived and longer-lived, slow-growing ones. Our Amazon mortality-to-growth ratio is very similar to US temperate forests, hinting at a universal property for trees.
Jinyan Yang, Belinda E. Medlyn, Martin G. De Kauwe, Remko A. Duursma, Mingkai Jiang, Dushan Kumarathunge, Kristine Y. Crous, Teresa E. Gimeno, Agnieszka Wujeska-Klause, and David S. Ellsworth
Biogeosciences, 17, 265–279, https://doi.org/10.5194/bg-17-265-2020, https://doi.org/10.5194/bg-17-265-2020, 2020
Short summary
Short summary
This study addressed a major knowledge gap in the response of forest productivity to elevated CO2. We first quantified forest productivity of an evergreen forest under both ambient and elevated CO2, using a model constrained by in situ measurements. The simulation showed the canopy productivity response to elevated CO2 to be smaller than that at the leaf scale due to different limiting processes. This finding provides a key reference for the understanding of CO2 impacts on forest ecosystems.
Mark F. Lunt, Paul I. Palmer, Liang Feng, Christopher M. Taylor, Hartmut Boesch, and Robert J. Parker
Atmos. Chem. Phys., 19, 14721–14740, https://doi.org/10.5194/acp-19-14721-2019, https://doi.org/10.5194/acp-19-14721-2019, 2019
Short summary
Short summary
Using data from the GOSAT satellite between 2010 and 2016 and a Bayesian inversion approach, we estimate monthly emissions of methane from tropical Africa. We find an increase in methane emissions during this period, driven in part by rising emissions from South Sudan. Using ancillary data we attribute this short-term emissions rise to an increase in the extent of the Sudd wetlands driven by increased outflow from the East African lakes.
Pierre Friedlingstein, Matthew W. Jones, Michael O'Sullivan, Robbie M. Andrew, Judith Hauck, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Corinne Le Quéré, Dorothee C. E. Bakker, Josep G. Canadell, Philippe Ciais, Robert B. Jackson, Peter Anthoni, Leticia Barbero, Ana Bastos, Vladislav Bastrikov, Meike Becker, Laurent Bopp, Erik Buitenhuis, Naveen Chandra, Frédéric Chevallier, Louise P. Chini, Kim I. Currie, Richard A. Feely, Marion Gehlen, Dennis Gilfillan, Thanos Gkritzalis, Daniel S. Goll, Nicolas Gruber, Sören Gutekunst, Ian Harris, Vanessa Haverd, Richard A. Houghton, George Hurtt, Tatiana Ilyina, Atul K. Jain, Emilie Joetzjer, Jed O. Kaplan, Etsushi Kato, Kees Klein Goldewijk, Jan Ivar Korsbakken, Peter Landschützer, Siv K. Lauvset, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Danica Lombardozzi, Gregg Marland, Patrick C. McGuire, Joe R. Melton, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Craig Neill, Abdirahman M. Omar, Tsuneo Ono, Anna Peregon, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Roland Séférian, Jörg Schwinger, Naomi Smith, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Guido R. van der Werf, Andrew J. Wiltshire, and Sönke Zaehle
Earth Syst. Sci. Data, 11, 1783–1838, https://doi.org/10.5194/essd-11-1783-2019, https://doi.org/10.5194/essd-11-1783-2019, 2019
Short summary
Short summary
The Global Carbon Budget 2019 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Malcolm J. Roberts, Alex Baker, Ed W. Blockley, Daley Calvert, Andrew Coward, Helene T. Hewitt, Laura C. Jackson, Till Kuhlbrodt, Pierre Mathiot, Christopher D. Roberts, Reinhard Schiemann, Jon Seddon, Benoît Vannière, and Pier Luigi Vidale
Geosci. Model Dev., 12, 4999–5028, https://doi.org/10.5194/gmd-12-4999-2019, https://doi.org/10.5194/gmd-12-4999-2019, 2019
Short summary
Short summary
We investigate the role that horizontal grid spacing plays in global coupled climate model simulations, together with examining the efficacy of a new design of simulation experiments that is being used by the community for multi-model comparison. We found that finer grid spacing in both atmosphere and ocean–sea ice models leads to a general reduction in bias compared to observations, and that once eddies in the ocean are resolved, several key climate processes are greatly improved.
Markus Todt, Nick Rutter, Christopher G. Fletcher, and Leanne M. Wake
The Cryosphere, 13, 3077–3091, https://doi.org/10.5194/tc-13-3077-2019, https://doi.org/10.5194/tc-13-3077-2019, 2019
Short summary
Short summary
Vegetation is often represented by a single layer in global land models. Studies have found deficient simulation of thermal radiation beneath forest canopies when represented by single-layer vegetation. This study corrects thermal radiation in forests for a global land model using single-layer vegetation in order to assess the effect of deficient thermal radiation on snow cover and snowmelt. Results indicate that single-layer vegetation causes snow in forests to be too cold and melt too late.
Karina E. Williams, Anna B. Harper, Chris Huntingford, Lina M. Mercado, Camilla T. Mathison, Pete D. Falloon, Peter M. Cox, and Joon Kim
Geosci. Model Dev., 12, 3207–3240, https://doi.org/10.5194/gmd-12-3207-2019, https://doi.org/10.5194/gmd-12-3207-2019, 2019
Short summary
Short summary
Data from the First ISLSCP Field Experiment, 1987–1989, is used to assess how well the JULES land-surface model simulates water stress in tallgrass prairie vegetation. We find that JULES simulates a decrease in key carbon and water cycle variables during the dry period, as expected, but that it does not capture the shape of the diurnal cycle on these days. These results will be used to inform future model development as part of wider evaluation efforts.
Mingkai Jiang, Sönke Zaehle, Martin G. De Kauwe, Anthony P. Walker, Silvia Caldararu, David S. Ellsworth, and Belinda E. Medlyn
Geosci. Model Dev., 12, 2069–2089, https://doi.org/10.5194/gmd-12-2069-2019, https://doi.org/10.5194/gmd-12-2069-2019, 2019
Short summary
Short summary
Here we used a simple analytical framework developed by Comins and McMurtrie (1993) to investigate how different model assumptions affected plant responses to elevated CO2. This framework is useful in revealing both the consequences and the mechanisms through which different assumptions affect predictions. We therefore recommend the use of this framework to analyze the likely outcomes of new assumptions before introducing them to complex model structures.
Martin G. De Kauwe, Belinda E. Medlyn, Andrew J. Pitman, John E. Drake, Anna Ukkola, Anne Griebel, Elise Pendall, Suzanne Prober, and Michael Roderick
Biogeosciences, 16, 903–916, https://doi.org/10.5194/bg-16-903-2019, https://doi.org/10.5194/bg-16-903-2019, 2019
Short summary
Short summary
Recent experimental evidence suggests that during heat extremes, trees may reduce photosynthesis to near zero but increase transpiration. Using eddy covariance data and examining the 3 days leading up to a temperature extreme, we found evidence of reduced photosynthesis and sustained or increased latent heat fluxes at Australian wooded flux sites. However, when focusing on heatwaves, we were unable to disentangle photosynthetic decoupling from the effect of increasing vapour pressure deficit.
Florent F. Malavelle, Jim M. Haywood, Lina M. Mercado, Gerd A. Folberth, Nicolas Bellouin, Stephen Sitch, and Paulo Artaxo
Atmos. Chem. Phys., 19, 1301–1326, https://doi.org/10.5194/acp-19-1301-2019, https://doi.org/10.5194/acp-19-1301-2019, 2019
Short summary
Short summary
Diffuse light can increase the efficiency of vegetation photosynthesis. Diffuse light results from scattering by either clouds or aerosols in the atmosphere. During the dry season biomass burning (BB) on the edges of the Amazon rainforest contributes significantly to the aerosol burden over the entire region. We show that despite a modest effect of change in light conditions, the overall impact of BB aerosols on the vegetation is still important when indirect climate feedbacks are considered.
Daniel T. McCoy, Paul R. Field, Gregory S. Elsaesser, Alejandro Bodas-Salcedo, Brian H. Kahn, Mark D. Zelinka, Chihiro Kodama, Thorsten Mauritsen, Benoit Vanniere, Malcolm Roberts, Pier L. Vidale, David Saint-Martin, Aurore Voldoire, Rein Haarsma, Adrian Hill, Ben Shipway, and Jonathan Wilkinson
Atmos. Chem. Phys., 19, 1147–1172, https://doi.org/10.5194/acp-19-1147-2019, https://doi.org/10.5194/acp-19-1147-2019, 2019
Short summary
Short summary
The largest single source of uncertainty in the climate sensitivity predicted by global climate models is how much low-altitude clouds change as the climate warms. Models predict that the amount of liquid within and the brightness of low-altitude clouds increase in the extratropics with warming. We show that increased fluxes of moisture into extratropical storms in the midlatitudes explain the majority of the observed trend and the modeled increase in liquid water within these storms.
Chris Huntingford, Rebecca J. Oliver, Lina M. Mercado, and Stephen Sitch
Biogeosciences, 15, 5415–5422, https://doi.org/10.5194/bg-15-5415-2018, https://doi.org/10.5194/bg-15-5415-2018, 2018
Short summary
Short summary
Raised ozone levels impact plant stomatal opening and thus photosynthesis. Most models describe this as a suppression of stomata opening. Field evidence suggests more complexity, as ozone damage may make stomatal response
sluggish. In some circumstances, this causes stomata to be more open – a concern during drought conditions – by increasing transpiration. To guide interpretation and modelling of field measurements, we present an equation for sluggish effects, via a single tau parameter.
Claudia Christine Stephan, Nicholas P. Klingaman, Pier Luigi Vidale, Andrew G. Turner, Marie-Estelle Demory, and Liang Guo
Geosci. Model Dev., 11, 3215–3233, https://doi.org/10.5194/gmd-11-3215-2018, https://doi.org/10.5194/gmd-11-3215-2018, 2018
Short summary
Short summary
Summer precipitation over China in the MetUM reaches twice its observed values. Increasing the horizontal resolution of the model and adding air–sea coupling have little effect on these biases. Nevertheless, MetUM correctly simulates spatial patterns of temporally coherent precipitation and the associated large-scale processes. This suggests that the model may provide useful predictions of summer intraseasonal variability despite the substantial biases in overall intraseasonal variance.
Anthony P. Walker, Ming Ye, Dan Lu, Martin G. De Kauwe, Lianhong Gu, Belinda E. Medlyn, Alistair Rogers, and Shawn P. Serbin
Geosci. Model Dev., 11, 3159–3185, https://doi.org/10.5194/gmd-11-3159-2018, https://doi.org/10.5194/gmd-11-3159-2018, 2018
Short summary
Short summary
Large uncertainty is inherent in model predictions due to imperfect knowledge of how to describe the processes that a model is intended to represent. Yet methods to quantify and evaluate this model hypothesis uncertainty are limited. To address this, the multi-assumption architecture and testbed (MAAT) automates the generation of all possible models by combining multiple representations of multiple processes. MAAT provides a formal framework for quantification of model hypothesis uncertainty.
Reinhard Schiemann, Pier Luigi Vidale, Len C. Shaffrey, Stephanie J. Johnson, Malcolm J. Roberts, Marie-Estelle Demory, Matthew S. Mizielinski, and Jane Strachan
Hydrol. Earth Syst. Sci., 22, 3933–3950, https://doi.org/10.5194/hess-22-3933-2018, https://doi.org/10.5194/hess-22-3933-2018, 2018
Short summary
Short summary
A new generation of global climate models with resolutions between 50 and 10 km is becoming available. Here, we assess how well one such model simulates European precipitation. We find clear improvements in the mean precipitation pattern, and importantly also for extreme daily precipitation over 30 major European river basins. Despite remaining limitations, new high-resolution global models hold great promise for improved climate predictions of European precipitation at impact-relevant scales.
Rebecca J. Oliver, Lina M. Mercado, Stephen Sitch, David Simpson, Belinda E. Medlyn, Yan-Shih Lin, and Gerd A. Folberth
Biogeosciences, 15, 4245–4269, https://doi.org/10.5194/bg-15-4245-2018, https://doi.org/10.5194/bg-15-4245-2018, 2018
Short summary
Short summary
Potential gains in terrestrial carbon sequestration over Europe from elevated CO2 can be partially offset by concurrent rises in tropospheric O3. The land surface model JULES was run in a factorial suite of experiments showing that by 2050 simulated GPP was reduced by 4 to 9 % due to plant O3 damage. Large regional variations exist with larger impacts identified for temperate compared to boreal regions. Plant O3 damage was greatest over the twentieth century and declined into the future.
Anna B. Harper, Andrew J. Wiltshire, Peter M. Cox, Pierre Friedlingstein, Chris D. Jones, Lina M. Mercado, Stephen Sitch, Karina Williams, and Carolina Duran-Rojas
Geosci. Model Dev., 11, 2857–2873, https://doi.org/10.5194/gmd-11-2857-2018, https://doi.org/10.5194/gmd-11-2857-2018, 2018
Short summary
Short summary
Dynamic global vegetation models are used for studying historical and future changes to vegetation and the terrestrial carbon cycle. JULES is a DGVM that represents the land surface in the UK Earth System Model. We compared simulated gross and net primary productivity of vegetation, vegetation distribution, and aspects of the transient carbon cycle to observational datasets. JULES was able to accurately reproduce many aspects of the terrestrial carbon cycle with the recent improvements.
Kashif Mahmud, Belinda E. Medlyn, Remko A. Duursma, Courtney Campany, and Martin G. De Kauwe
Biogeosciences, 15, 4003–4018, https://doi.org/10.5194/bg-15-4003-2018, https://doi.org/10.5194/bg-15-4003-2018, 2018
Short summary
Short summary
A major limitation of current terrestrial vegetation models is that we do not know how to model C balance processes under sink-limited conditions. To address this limitation, we applied data assimilation of a simple C balance model to a manipulative experiment in which sink limitation was induced with low rooting volume. Our analysis framework allowed us to infer that, in addition to a feedback on photosynthetic rates, the reduction in growth was effected by other C balance processes.
Alexandre A. Renchon, Anne Griebel, Daniel Metzen, Christopher A. Williams, Belinda Medlyn, Remko A. Duursma, Craig V. M. Barton, Chelsea Maier, Matthias M. Boer, Peter Isaac, David Tissue, Victor Resco de Dios, and Elise Pendall
Biogeosciences, 15, 3703–3716, https://doi.org/10.5194/bg-15-3703-2018, https://doi.org/10.5194/bg-15-3703-2018, 2018
Short summary
Short summary
We report the seasonality of net ecosystem–atmosphere CO2 exchange (NEE) in a temperate evergreen broadleaved forest in Sydney, Australia. We investigated how carbon exchange varied with climatic drivers and canopy dynamics (leaf area index, litter fall). We found that our site acted as a net source of carbon in summer and a net sink in winter. Ecosystem respiration (ER) drove NEE seasonality, as the seasonal amplitude of ER was greater than gross primary productivity.
Claudia Christine Stephan, Nicholas P. Klingaman, Pier Luigi Vidale, Andrew G. Turner, Marie-Estelle Demory, and Liang Guo
Geosci. Model Dev., 11, 1823–1847, https://doi.org/10.5194/gmd-11-1823-2018, https://doi.org/10.5194/gmd-11-1823-2018, 2018
Short summary
Short summary
Climate simulations are evaluated for their ability to reproduce year-to-year variability of precipitation over China. Mean precipitation and variability are too high in all simulations but improve with finer resolution and coupling. Simulations reproduce the observed spatial patterns of rainfall variability. However, not all of these patterns are associated with observed mechanisms. For example, simulations do not reproduce summer rainfall along the Yangtze valley in response to El Niño.
Hui Yang and Chris Huntingford
Nat. Hazards Earth Syst. Sci., 18, 491–497, https://doi.org/10.5194/nhess-18-491-2018, https://doi.org/10.5194/nhess-18-491-2018, 2018
Short summary
Short summary
Major drought in East Africa at the end of 2016 caused severe famine and loss of life. We pose the following question: are increasing levels of atmospheric greenhouse gas concentrations, due to human activity, making droughts such as this more likely? Computer models of the climate system are powerful tools to answer this. Scanning across a full set of these, we find that how future climate change will impact on East Africa ASO drought risk remains uncertain, in any particular year.
Przemyslaw Zelazowski, Chris Huntingford, Lina M. Mercado, and Nathalie Schaller
Geosci. Model Dev., 11, 541–560, https://doi.org/10.5194/gmd-11-541-2018, https://doi.org/10.5194/gmd-11-541-2018, 2018
Short summary
Short summary
This paper describes the calibration of the IMOGEN (Integrated Model Of Global Effects of climatic aNomalies) impact modelling system against 22 global climate models (GCMs) in the CMIP3 database.
IMOGEN uses "pattern scaling" to emulate GCMs, and with such linearity enables projections to be made for alternative future scenarios of atmospheric greenhouse gas concentrations. It is also coupled to the JULES land surface model, to allow impact assessments.
IMOGEN uses "pattern scaling" to emulate GCMs, and with such linearity enables projections to be made for alternative future scenarios of atmospheric greenhouse gas concentrations. It is also coupled to the JULES land surface model, to allow impact assessments.
Demerval S. Moreira, Karla M. Longo, Saulo R. Freitas, Marcia A. Yamasoe, Lina M. Mercado, Nilton E. Rosário, Emauel Gloor, Rosane S. M. Viana, John B. Miller, Luciana V. Gatti, Kenia T. Wiedemann, Lucas K. G. Domingues, and Caio C. S. Correia
Atmos. Chem. Phys., 17, 14785–14810, https://doi.org/10.5194/acp-17-14785-2017, https://doi.org/10.5194/acp-17-14785-2017, 2017
Short summary
Short summary
Fire in the Amazon forest produces a large amount of smoke that is released into the atmosphere and covers a large portion of South America for about 3 months each year. The smoke affects the energy and CO2 budgets. Using a numerical atmospheric model, we demonstrated that the smoke changes the forest from a source to a sink of CO2 to the atmosphere. The smoke ultimately acts to at least partially compensate for the forest carbon lost due to fire emissions.
Martin G. De Kauwe, Belinda E. Medlyn, Jürgen Knauer, and Christopher A. Williams
Biogeosciences, 14, 4435–4453, https://doi.org/10.5194/bg-14-4435-2017, https://doi.org/10.5194/bg-14-4435-2017, 2017
Short summary
Short summary
Understanding the sensitivity of transpiration to stomatal conductance is critical to simulating the water cycle. This sensitivity is a function of the degree of coupling between the vegetation and the atmosphere. We combined an extensive literature summary with estimates of coupling derived from FLUXNET data. We found notable departures from the values previously reported. These data form a model benchmarking metric to test existing coupling assumptions.
Chris Huntingford, Hui Yang, Anna Harper, Peter M. Cox, Nicola Gedney, Eleanor J. Burke, Jason A. Lowe, Garry Hayman, William J. Collins, Stephen M. Smith, and Edward Comyn-Platt
Earth Syst. Dynam., 8, 617–626, https://doi.org/10.5194/esd-8-617-2017, https://doi.org/10.5194/esd-8-617-2017, 2017
Short summary
Short summary
Recent UNFCCC climate meetings have placed much emphasis on constraining global warming to remain below 2 °C. The 2015 Paris meeting went further and gave an aspiration to fulfil a 1.5 °C threshold. We provide a flexible set of algebraic global temperature profiles that stabilise to either target. This will potentially allow the climate research community to estimate local climatic implications for these temperature profiles, along with emissions trajectories to fulfil them.
Eleanor J. Burke, Altug Ekici, Ye Huang, Sarah E. Chadburn, Chris Huntingford, Philippe Ciais, Pierre Friedlingstein, Shushi Peng, and Gerhard Krinner
Biogeosciences, 14, 3051–3066, https://doi.org/10.5194/bg-14-3051-2017, https://doi.org/10.5194/bg-14-3051-2017, 2017
Short summary
Short summary
There are large reserves of carbon within the permafrost which might be released to the atmosphere under global warming. Our models suggest this release may cause an additional global temperature increase of 0.005 to 0.2°C by the year 2100 and 0.01 to 0.34°C by the year 2300. Under climate mitigation scenarios this is between 1.5 and 9 % (by 2100) and between 6 and 16 % (by 2300) of the global mean temperature change. There is a large uncertainty associated with these results.
David Walters, Ian Boutle, Malcolm Brooks, Thomas Melvin, Rachel Stratton, Simon Vosper, Helen Wells, Keith Williams, Nigel Wood, Thomas Allen, Andrew Bushell, Dan Copsey, Paul Earnshaw, John Edwards, Markus Gross, Steven Hardiman, Chris Harris, Julian Heming, Nicholas Klingaman, Richard Levine, James Manners, Gill Martin, Sean Milton, Marion Mittermaier, Cyril Morcrette, Thomas Riddick, Malcolm Roberts, Claudio Sanchez, Paul Selwood, Alison Stirling, Chris Smith, Dan Suri, Warren Tennant, Pier Luigi Vidale, Jonathan Wilkinson, Martin Willett, Steve Woolnough, and Prince Xavier
Geosci. Model Dev., 10, 1487–1520, https://doi.org/10.5194/gmd-10-1487-2017, https://doi.org/10.5194/gmd-10-1487-2017, 2017
Short summary
Short summary
Global Atmosphere (GA) configurations of the Unified Model (UM) and Global Land (GL) configurations of JULES are developed for use in any global atmospheric modelling application.
We describe a recent iteration of these configurations: GA6/GL6. This includes ENDGame: a new dynamical core designed to improve the model's accuracy, stability and scalability. GA6 is now operational in a variety of Met Office and UM collaborators applications and hence its documentation is important.
We describe a recent iteration of these configurations: GA6/GL6. This includes ENDGame: a new dynamical core designed to improve the model's accuracy, stability and scalability. GA6 is now operational in a variety of Met Office and UM collaborators applications and hence its documentation is important.
Emma L. Robinson, Eleanor M. Blyth, Douglas B. Clark, Jon Finch, and Alison C. Rudd
Hydrol. Earth Syst. Sci., 21, 1189–1224, https://doi.org/10.5194/hess-21-1189-2017, https://doi.org/10.5194/hess-21-1189-2017, 2017
Short summary
Short summary
We present a dataset of daily meteorological variables at 1 km resolution over Great Britain (1961–2012), calculated by spatially downscaling coarser resolution datasets, adjusting for local topography, along with derived potential evapotranspiration (PET). A positive trend in PET was identified and attributed to trends in the meteorology. The trend in PET is particularly driven by decreasing relative humidity and increasing shortwave radiation in the spring.
Yiqi Luo, Zheng Shi, Xingjie Lu, Jianyang Xia, Junyi Liang, Jiang Jiang, Ying Wang, Matthew J. Smith, Lifen Jiang, Anders Ahlström, Benito Chen, Oleksandra Hararuk, Alan Hastings, Forrest Hoffman, Belinda Medlyn, Shuli Niu, Martin Rasmussen, Katherine Todd-Brown, and Ying-Ping Wang
Biogeosciences, 14, 145–161, https://doi.org/10.5194/bg-14-145-2017, https://doi.org/10.5194/bg-14-145-2017, 2017
Short summary
Short summary
Climate change is strongly regulated by land carbon cycle. However, we lack the ability to predict future land carbon sequestration. Here, we develop a novel framework for understanding what determines the direction and rate of future change in land carbon storage. The framework offers a suite of new approaches to revolutionize land carbon model evaluation and improvement.
Reindert J. Haarsma, Malcolm J. Roberts, Pier Luigi Vidale, Catherine A. Senior, Alessio Bellucci, Qing Bao, Ping Chang, Susanna Corti, Neven S. Fučkar, Virginie Guemas, Jost von Hardenberg, Wilco Hazeleger, Chihiro Kodama, Torben Koenigk, L. Ruby Leung, Jian Lu, Jing-Jia Luo, Jiafu Mao, Matthew S. Mizielinski, Ryo Mizuta, Paulo Nobre, Masaki Satoh, Enrico Scoccimarro, Tido Semmler, Justin Small, and Jin-Song von Storch
Geosci. Model Dev., 9, 4185–4208, https://doi.org/10.5194/gmd-9-4185-2016, https://doi.org/10.5194/gmd-9-4185-2016, 2016
Short summary
Short summary
Recent progress in computing power has enabled climate models to simulate more processes in detail and on a smaller scale. Here we present a common protocol for these high-resolution runs that will foster the analysis and understanding of the impact of model resolution on the simulated climate. These runs will also serve as a more reliable source for assessing climate risks that are associated with small-scale weather phenomena such as tropical cyclones.
Anna B. Harper, Peter M. Cox, Pierre Friedlingstein, Andy J. Wiltshire, Chris D. Jones, Stephen Sitch, Lina M. Mercado, Margriet Groenendijk, Eddy Robertson, Jens Kattge, Gerhard Bönisch, Owen K. Atkin, Michael Bahn, Johannes Cornelissen, Ülo Niinemets, Vladimir Onipchenko, Josep Peñuelas, Lourens Poorter, Peter B. Reich, Nadjeda A. Soudzilovskaia, and Peter van Bodegom
Geosci. Model Dev., 9, 2415–2440, https://doi.org/10.5194/gmd-9-2415-2016, https://doi.org/10.5194/gmd-9-2415-2016, 2016
Short summary
Short summary
Dynamic global vegetation models (DGVMs) are used to predict the response of vegetation to climate change. We improved the representation of carbon uptake by ecosystems in a DGVM by including a wider range of trade-offs between nutrient allocation to photosynthetic capacity and leaf structure, based on observed plant traits from a worldwide data base. The improved model has higher rates of photosynthesis and net C uptake by plants, and more closely matches observations at site and global scales.
Stefan C. Dekker, Margriet Groenendijk, Ben B. B. Booth, Chris Huntingford, and Peter M. Cox
Earth Syst. Dynam., 7, 525–533, https://doi.org/10.5194/esd-7-525-2016, https://doi.org/10.5194/esd-7-525-2016, 2016
Short summary
Short summary
Our analysis allows us to infer maps of changing plant water-use efficiency (WUE) for 1901–2010, using atmospheric observations of temperature, humidity and CO2. Our estimated increase in global WUE is consistent with the tree-ring and eddy covariance data, but much larger than the historical WUE increases simulated by Earth System Models (ESMs). We therefore conclude that the effects of increasing CO2 on plant WUE are significantly underestimated in the latest climate projections.
K. Frieler, A. Levermann, J. Elliott, J. Heinke, A. Arneth, M. F. P. Bierkens, P. Ciais, D. B. Clark, D. Deryng, P. Döll, P. Falloon, B. Fekete, C. Folberth, A. D. Friend, C. Gellhorn, S. N. Gosling, I. Haddeland, N. Khabarov, M. Lomas, Y. Masaki, K. Nishina, K. Neumann, T. Oki, R. Pavlick, A. C. Ruane, E. Schmid, C. Schmitz, T. Stacke, E. Stehfest, Q. Tang, D. Wisser, V. Huber, F. Piontek, L. Warszawski, J. Schewe, H. Lotze-Campen, and H. J. Schellnhuber
Earth Syst. Dynam., 6, 447–460, https://doi.org/10.5194/esd-6-447-2015, https://doi.org/10.5194/esd-6-447-2015, 2015
K. Nishina, A. Ito, P. Falloon, A. D. Friend, D. J. Beerling, P. Ciais, D. B. Clark, R. Kahana, E. Kato, W. Lucht, M. Lomas, R. Pavlick, S. Schaphoff, L. Warszawaski, and T. Yokohata
Earth Syst. Dynam., 6, 435–445, https://doi.org/10.5194/esd-6-435-2015, https://doi.org/10.5194/esd-6-435-2015, 2015
Short summary
Short summary
Our study focused on uncertainties in terrestrial C cycling under newly developed scenarios with CMIP5. This study presents first results for examining relative uncertainties of projected terrestrial C cycling in multiple projection components. Only using our new model inter-comparison project data sets enables us to evaluate various uncertainty sources in projection periods. The information on relative uncertainties is useful for climate science and climate change impact evaluation.
S. Sitch, P. Friedlingstein, N. Gruber, S. D. Jones, G. Murray-Tortarolo, A. Ahlström, S. C. Doney, H. Graven, C. Heinze, C. Huntingford, S. Levis, P. E. Levy, M. Lomas, B. Poulter, N. Viovy, S. Zaehle, N. Zeng, A. Arneth, G. Bonan, L. Bopp, J. G. Canadell, F. Chevallier, P. Ciais, R. Ellis, M. Gloor, P. Peylin, S. L. Piao, C. Le Quéré, B. Smith, Z. Zhu, and R. Myneni
Biogeosciences, 12, 653–679, https://doi.org/10.5194/bg-12-653-2015, https://doi.org/10.5194/bg-12-653-2015, 2015
E. M. Blyth, R. Oliver, and N. Gedney
Biogeosciences Discuss., https://doi.org/10.5194/bgd-11-17967-2014, https://doi.org/10.5194/bgd-11-17967-2014, 2014
Revised manuscript has not been submitted
Short summary
Short summary
By studying patterns of soil carbon in the Northern Latitudes alongside vegetation, soil temperatures and wetlands, it is apparent that the main cause of high values of soil carbon is the presence of saturated soils (wetlands). This link can only be modelled if the wetlands are assumed to completely suppress soil respiration. It is important to be able to model wetlands and their effect on soil carbon if we are to understand the long term future of the soil-carbon store in Northern Latitudes.
G. D. Hayman, F. M. O'Connor, M. Dalvi, D. B. Clark, N. Gedney, C. Huntingford, C. Prigent, M. Buchwitz, O. Schneising, J. P. Burrows, C. Wilson, N. Richards, and M. Chipperfield
Atmos. Chem. Phys., 14, 13257–13280, https://doi.org/10.5194/acp-14-13257-2014, https://doi.org/10.5194/acp-14-13257-2014, 2014
Short summary
Short summary
Globally, wetlands are a major source of methane, which is the second most important greenhouse gas. We find the JULES wetland methane scheme to perform well in general, although there is a tendency for it to overpredict emissions in the tropics and underpredict them in northern latitudes. Our study highlights novel uses of satellite data as a major tool to constrain land-atmosphere methane flux models in a warming world.
S. J. O'Shea, G. Allen, M. W. Gallagher, K. Bower, S. M. Illingworth, J. B. A. Muller, B. T. Jones, C. J. Percival, S. J-B. Bauguitte, M. Cain, N. Warwick, A. Quiquet, U. Skiba, J. Drewer, K. Dinsmore, E. G. Nisbet, D. Lowry, R. E. Fisher, J. L. France, M. Aurela, A. Lohila, G. Hayman, C. George, D. B. Clark, A. J. Manning, A. D. Friend, and J. Pyle
Atmos. Chem. Phys., 14, 13159–13174, https://doi.org/10.5194/acp-14-13159-2014, https://doi.org/10.5194/acp-14-13159-2014, 2014
Short summary
Short summary
This paper presents airborne measurements of greenhouse gases collected in the European Arctic. Regional scale flux estimates for the northern Scandinavian wetlands are derived. These fluxes are found to be in excellent agreement with coincident surface measurements within the aircraft's sampling domain. This has allowed a significant low bias to be identified in two commonly used process-based land surface models.
M. S. Mizielinski, M. J. Roberts, P. L. Vidale, R. Schiemann, M.-E. Demory, J. Strachan, T. Edwards, A. Stephens, B. N. Lawrence, M. Pritchard, P. Chiu, A. Iwi, J. Churchill, C. del Cano Novales, J. Kettleborough, W. Roseblade, P. Selwood, M. Foster, M. Glover, and A. Malcolm
Geosci. Model Dev., 7, 1629–1640, https://doi.org/10.5194/gmd-7-1629-2014, https://doi.org/10.5194/gmd-7-1629-2014, 2014
J. B. Fisher, M. Sikka, W. C. Oechel, D. N. Huntzinger, J. R. Melton, C. D. Koven, A. Ahlström, M. A. Arain, I. Baker, J. M. Chen, P. Ciais, C. Davidson, M. Dietze, B. El-Masri, D. Hayes, C. Huntingford, A. K. Jain, P. E. Levy, M. R. Lomas, B. Poulter, D. Price, A. K. Sahoo, K. Schaefer, H. Tian, E. Tomelleri, H. Verbeeck, N. Viovy, R. Wania, N. Zeng, and C. E. Miller
Biogeosciences, 11, 4271–4288, https://doi.org/10.5194/bg-11-4271-2014, https://doi.org/10.5194/bg-11-4271-2014, 2014
N. M. Fyllas, E. Gloor, L. M. Mercado, S. Sitch, C. A. Quesada, T. F. Domingues, D. R. Galbraith, A. Torre-Lezama, E. Vilanova, H. Ramírez-Angulo, N. Higuchi, D. A. Neill, M. Silveira, L. Ferreira, G. A. Aymard C., Y. Malhi, O. L. Phillips, and J. Lloyd
Geosci. Model Dev., 7, 1251–1269, https://doi.org/10.5194/gmd-7-1251-2014, https://doi.org/10.5194/gmd-7-1251-2014, 2014
F. Lohou, L. Kergoat, F. Guichard, A. Boone, B. Cappelaere, J.-M. Cohard, J. Demarty, S. Galle, M. Grippa, C. Peugeot, D. Ramier, C. M. Taylor, and F. Timouk
Atmos. Chem. Phys., 14, 3883–3898, https://doi.org/10.5194/acp-14-3883-2014, https://doi.org/10.5194/acp-14-3883-2014, 2014
K. Nishina, A. Ito, D. J. Beerling, P. Cadule, P. Ciais, D. B. Clark, P. Falloon, A. D. Friend, R. Kahana, E. Kato, R. Keribin, W. Lucht, M. Lomas, T. T. Rademacher, R. Pavlick, S. Schaphoff, N. Vuichard, L. Warszawaski, and T. Yokohata
Earth Syst. Dynam., 5, 197–209, https://doi.org/10.5194/esd-5-197-2014, https://doi.org/10.5194/esd-5-197-2014, 2014
D. N. Walters, K. D. Williams, I. A. Boutle, A. C. Bushell, J. M. Edwards, P. R. Field, A. P. Lock, C. J. Morcrette, R. A. Stratton, J. M. Wilkinson, M. R. Willett, N. Bellouin, A. Bodas-Salcedo, M. E. Brooks, D. Copsey, P. D. Earnshaw, S. C. Hardiman, C. M. Harris, R. C. Levine, C. MacLachlan, J. C. Manners, G. M. Martin, S. F. Milton, M. D. Palmer, M. J. Roberts, J. M. Rodríguez, W. J. Tennant, and P. L. Vidale
Geosci. Model Dev., 7, 361–386, https://doi.org/10.5194/gmd-7-361-2014, https://doi.org/10.5194/gmd-7-361-2014, 2014
J. C. S. Davie, P. D. Falloon, R. Kahana, R. Dankers, R. Betts, F. T. Portmann, D. Wisser, D. B. Clark, A. Ito, Y. Masaki, K. Nishina, B. Fekete, Z. Tessler, Y. Wada, X. Liu, Q. Tang, S. Hagemann, T. Stacke, R. Pavlick, S. Schaphoff, S. N. Gosling, W. Franssen, and N. Arnell
Earth Syst. Dynam., 4, 359–374, https://doi.org/10.5194/esd-4-359-2013, https://doi.org/10.5194/esd-4-359-2013, 2013
D. S. Moreira, S. R. Freitas, J. P. Bonatti, L. M. Mercado, N. M. É. Rosário, K. M. Longo, J. B. Miller, M. Gloor, and L. V. Gatti
Geosci. Model Dev., 6, 1243–1259, https://doi.org/10.5194/gmd-6-1243-2013, https://doi.org/10.5194/gmd-6-1243-2013, 2013
C. Le Quéré, R. J. Andres, T. Boden, T. Conway, R. A. Houghton, J. I. House, G. Marland, G. P. Peters, G. R. van der Werf, A. Ahlström, R. M. Andrew, L. Bopp, J. G. Canadell, P. Ciais, S. C. Doney, C. Enright, P. Friedlingstein, C. Huntingford, A. K. Jain, C. Jourdain, E. Kato, R. F. Keeling, K. Klein Goldewijk, S. Levis, P. Levy, M. Lomas, B. Poulter, M. R. Raupach, J. Schwinger, S. Sitch, B. D. Stocker, N. Viovy, S. Zaehle, and N. Zeng
Earth Syst. Sci. Data, 5, 165–185, https://doi.org/10.5194/essd-5-165-2013, https://doi.org/10.5194/essd-5-165-2013, 2013
S. Hagemann, C. Chen, D. B. Clark, S. Folwell, S. N. Gosling, I. Haddeland, N. Hanasaki, J. Heinke, F. Ludwig, F. Voss, and A. J. Wiltshire
Earth Syst. Dynam., 4, 129–144, https://doi.org/10.5194/esd-4-129-2013, https://doi.org/10.5194/esd-4-129-2013, 2013
Related subject area
Biogeosciences
FABM-NflexPD 2.0: testing an instantaneous acclimation approach for modeling the implications of phytoplankton eco-physiology for the carbon and nutrient cycles
Evaluating the vegetation–atmosphere coupling strength of ORCHIDEE land surface model (v7266)
Non-Redfieldian carbon model for the Baltic Sea (ERGOM version 1.2) – implementation and budget estimates
Implementation of a new crop phenology and irrigation scheme in the ISBA land surface model using SURFEX_v8.1
Simulating long-term responses of soil organic matter turnover to substrate stoichiometry by abstracting fast and small-scale microbial processes: the Soil Enzyme Steady Allocation Model (SESAM; v3.0)
Modeling demographic-driven vegetation dynamics and ecosystem biogeochemical cycling in NASA GISS's Earth system model (ModelE-BiomeE v.1.0)
Forest fluxes and mortality response to drought: model description (ORCHIDEE-CAN-NHA r7236) and evaluation at the Caxiuanã drought experiment
Matrix representation of lateral soil movements: scaling and calibrating CE-DYNAM (v2) at a continental level
CANOPS-GRB v1.0: a new Earth system model for simulating the evolution of ocean–atmosphere chemistry over geologic timescales
Low sensitivity of three terrestrial biosphere models to soil texture over the South American tropics
FESDIA (v1.0): exploring temporal variations of sediment biogeochemistry under the influence of flood events using numerical modelling
Impact of changes in climate and CO2 on the carbon storage potential of vegetation under limited water availability using SEIB-DGVM version 3.02
FORCCHN V2.0: an individual-based model for predicting multiscale forest carbon dynamics
Global agricultural ammonia emissions simulated with the ORCHIDEE land surface model
Climate and parameter sensitivity and induced uncertainties in carbon stock projections for European forests (using LPJ-GUESS 4.0)
ForamEcoGENIE 2.0: Incorporating symbiosis and spine traits into a trait-based global planktic foraminifera model
Use of genetic algorithms for ocean model parameter optimisation: a case study using PISCES-v2_RC for North Atlantic particulate organic carbon
SurEau-Ecos v2.0: a trait-based plant hydraulics model for simulations of plant water status and drought-induced mortality at the ecosystem level
Representation of the phosphorus cycle in the Joint UK Land Environment Simulator (vn5.5_JULES-CNP)
CLM5-FruitTree: a new sub-model for deciduous fruit trees in the Community Land Model (CLM5)
The impact of hurricane disturbances on a tropical forest: implementing a palm plant functional type and hurricane disturbance module in ED2-HuDi V1.0
A validation standard for area of habitat maps for terrestrial birds and mammals
Soil Cycles of Elements simulator for Predicting TERrestrial regulation of greenhouse gases: SCEPTER v0.9
Using terrestrial laser scanning to constrain forest ecosystem structure and functions in the Ecosystem Demography model (ED2.2)
A map of global peatland extent created using machine learning (Peat-ML)
Implementation and evaluation of the unified stomatal optimization approach in the Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
ECOSMO II(CHL): a marine biogeochemical model for the North Atlantic and the Arctic
Water Ecosystems Tool (WET) 1.0 – a new generation of flexible aquatic ecosystem model
Development of an open-source regional data assimilation system in PEcAn v. 1.7.2: application to carbon cycle reanalysis across the contiguous US using SIPNET
Predicting global terrestrial biomes with the LeNet convolutional neural network
KGML-ag: a modeling framework of knowledge-guided machine learning to simulate agroecosystems: a case study of estimating N2O emission using data from mesocosm experiments
Assessing methane emissions for northern peatlands in ORCHIDEE-PEAT revision 7020
A dynamic local-scale vegetation model for lycopsids (LYCOm v1.0)
Soil-related developments of the Biome-BGCMuSo v6.2 terrestrial ecosystem model
Global evaluation of the Ecosystem Demography model (ED v3.0)
A new snow module improves predictions of the isotope-enabled MAIDENiso forest growth model
Calibrating the soil organic carbon model Yasso20 with multiple datasets
The PFLOTRAN Reaction Sandbox
A new approach to simulate peat accumulation, degradation and stability in a global land surface scheme (JULES vn5.8_accumulate_soil) for northern and temperate peatlands
Definitions and methods to estimate regional land carbon fluxes for the second phase of the REgional Carbon Cycle Assessment and Processes Project (RECCAP-2)
Locating trees to mitigate outdoor radiant load of humans in urban areas using a metaheuristic hill-climbing algorithm – introducing TreePlanter v1.0
Sensitivity of asymmetric oxygen minimum zones to mixing intensity and stoichiometry in the tropical Pacific using a basin-scale model (OGCM-DMEC V1.4)
The importance of turbulent ocean–sea ice nutrient exchanges for simulation of ice algal biomass and production with CICE6.1 and Icepack 1.2
Modeling symbiotic biological nitrogen fixation in grain legumes globally with LPJ-GUESS (v4.0, r10285)
Afforestation impact on soil temperature in regional climate model simulations over Europe
BioRT-Flux-PIHM v1.0: a biogeochemical reactive transport model at the watershed scale
Modeling the short-term fire effects on vegetation dynamics and surface energy in southern Africa using the improved SSiB4/TRIFFID-Fire model
Explicit silicate cycling in the Kiel Marine Biogeochemistry Model version 3 (KMBM3) embedded in the UVic ESCM version 2.9
Performance analysis of regional AquaCrop (v6.1) biomass and surface soil moisture simulations using satellite and in situ observations
OMEN-SED(-RCM) (v1.1): a pseudo-reactive continuum representation of organic matter degradation dynamics for OMEN-SED
Onur Kerimoglu, Markus Pahlow, Prima Anugerahanti, and Sherwood Lan Smith
Geosci. Model Dev., 16, 95–108, https://doi.org/10.5194/gmd-16-95-2023, https://doi.org/10.5194/gmd-16-95-2023, 2023
Short summary
Short summary
In classical models that track the changes in the elemental composition of phytoplankton, additional state variables are required for each element resolved. In this study, we show how the behavior of such an explicit model can be approximated using an
instantaneous acclimationapproach, in which the elemental composition of the phytoplankton is assumed to adjust to an optimal value instantaneously. Through rigorous tests, we evaluate the consistency of this scheme.
Yuan Zhang, Devaraju Narayanappa, Philippe Ciais, Wei Li, Daniel Goll, Nicolas Vuichard, Martin G. De Kauwe, Laurent Li, and Fabienne Maignan
Geosci. Model Dev., 15, 9111–9125, https://doi.org/10.5194/gmd-15-9111-2022, https://doi.org/10.5194/gmd-15-9111-2022, 2022
Short summary
Short summary
There are a few studies to examine if current models correctly represented the complex processes of transpiration. Here, we use a coefficient Ω, which indicates if transpiration is mainly controlled by vegetation processes or by turbulence, to evaluate the ORCHIDEE model. We found a good performance of ORCHIDEE, but due to compensation of biases in different processes, we also identified how different factors control Ω and where the model is wrong. Our method is generic to evaluate other models.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
Short summary
Short summary
Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Arsène Druel, Simon Munier, Anthony Mucia, Clément Albergel, and Jean-Christophe Calvet
Geosci. Model Dev., 15, 8453–8471, https://doi.org/10.5194/gmd-15-8453-2022, https://doi.org/10.5194/gmd-15-8453-2022, 2022
Short summary
Short summary
Crop phenology and irrigation is implemented into a land surface model able to work at a global scale. A case study is presented over Nebraska (USA). Simulations with and without the new scheme are compared to different satellite-based observations. The model is able to produce a realistic yearly irrigation water amount. The irrigation scheme improves the simulated leaf area index, gross primary productivity, evapotransipiration, and land surface temperature.
Thomas Wutzler, Lin Yu, Marion Schrumpf, and Sönke Zaehle
Geosci. Model Dev., 15, 8377–8393, https://doi.org/10.5194/gmd-15-8377-2022, https://doi.org/10.5194/gmd-15-8377-2022, 2022
Short summary
Short summary
Soil microbes process soil organic matter and affect carbon storage and plant nutrition at the ecosystem scale. We hypothesized that decadal dynamics is constrained by the ratios of elements in litter inputs, microbes, and matter and that microbial community optimizes growth. This allowed the SESAM model to descibe decadal-term carbon sequestration in soils and other biogeochemical processes explicitly accounting for microbial processes but without its problematic fine-scale parameterization.
Ensheng Weng, Igor Aleinov, Ram Singh, Michael J. Puma, Sonali S. McDermid, Nancy Y. Kiang, Maxwell Kelley, Kevin Wilcox, Ray Dybzinski, Caroline E. Farrior, Stephen W. Pacala, and Benjamin I. Cook
Geosci. Model Dev., 15, 8153–8180, https://doi.org/10.5194/gmd-15-8153-2022, https://doi.org/10.5194/gmd-15-8153-2022, 2022
Short summary
Short summary
We develop a demographic vegetation model to improve the representation of terrestrial vegetation dynamics and ecosystem biogeochemical cycles in the Goddard Institute for Space Studies ModelE. The individual-based competition for light and soil resources makes the modeling of eco-evolutionary optimality possible. This model will enable ModelE to simulate long-term biogeophysical and biogeochemical feedbacks between the climate system and land ecosystems at decadal to centurial temporal scales.
Yitong Yao, Emilie Joetzjer, Philippe Ciais, Nicolas Viovy, Fabio Cresto Aleina, Jerome Chave, Lawren Sack, Megan Bartlett, Patrick Meir, Rosie Fisher, and Sebastiaan Luyssaert
Geosci. Model Dev., 15, 7809–7833, https://doi.org/10.5194/gmd-15-7809-2022, https://doi.org/10.5194/gmd-15-7809-2022, 2022
Short summary
Short summary
To facilitate more mechanistic modeling of drought effects on forest dynamics, our study implements a hydraulic module to simulate the vertical water flow, change in water storage and percentage loss of stem conductance (PLC). With the relationship between PLC and tree mortality, our model can successfully reproduce the large biomass drop observed under throughfall exclusion. Our hydraulic module provides promising avenues benefiting the prediction for mortality under future drought events.
Arthur Nicolaus Fendrich, Philippe Ciais, Emanuele Lugato, Marco Carozzi, Bertrand Guenet, Pasquale Borrelli, Victoria Naipal, Matthew McGrath, Philippe Martin, and Panos Panagos
Geosci. Model Dev., 15, 7835–7857, https://doi.org/10.5194/gmd-15-7835-2022, https://doi.org/10.5194/gmd-15-7835-2022, 2022
Short summary
Short summary
Currently, spatially explicit models for soil carbon stock can simulate the impacts of several changes. However, they do not incorporate the erosion, lateral transport, and deposition (ETD) of soil material. The present work developed ETD formulation, illustrated model calibration and validation for Europe, and presented the results for a depositional site. We expect that our work advances ETD models' description and facilitates their reproduction and incorporation in land surface models.
Kazumi Ozaki, Devon B. Cole, Christopher T. Reinhard, and Eiichi Tajika
Geosci. Model Dev., 15, 7593–7639, https://doi.org/10.5194/gmd-15-7593-2022, https://doi.org/10.5194/gmd-15-7593-2022, 2022
Short summary
Short summary
A new biogeochemical model (CANOPS-GRB v1.0) for assessing the redox stability and dynamics of the ocean–atmosphere system on geologic timescales has been developed. In this paper, we present a full description of the model and its performance. CANOPS-GRB is a useful tool for understanding the factors regulating atmospheric O2 level and has the potential to greatly refine our current understanding of Earth's oxygenation history.
Félicien Meunier, Wim Verbruggen, Hans Verbeeck, and Marc Peaucelle
Geosci. Model Dev., 15, 7573–7591, https://doi.org/10.5194/gmd-15-7573-2022, https://doi.org/10.5194/gmd-15-7573-2022, 2022
Short summary
Short summary
Drought stress occurs in plants when water supply (i.e. root water uptake) is lower than the water demand (i.e. atmospheric demand). It is strongly related to soil properties and expected to increase in intensity and frequency in the tropics due to climate change. In this study, we show that contrary to the expectations, state-of-the-art terrestrial biosphere models are mostly insensitive to soil texture and hence probably inadequate to reproduce in silico the plant water status in drying soils.
Stanley I. Nmor, Eric Viollier, Lucie Pastor, Bruno Lansard, Christophe Rabouille, and Karline Soetaert
Geosci. Model Dev., 15, 7325–7351, https://doi.org/10.5194/gmd-15-7325-2022, https://doi.org/10.5194/gmd-15-7325-2022, 2022
Short summary
Short summary
The coastal marine environment serves as a transition zone in the land–ocean continuum and is susceptible to episodic phenomena such as flash floods, which cause massive organic matter deposition. Here, we present a model of sediment early diagenesis that explicitly describes this type of deposition while also incorporating unique flood deposit characteristics. This model can be used to investigate the temporal evolution of marine sediments following abrupt changes in environmental conditions.
Shanlin Tong, Weiguang Wang, Jie Chen, Chong-Yu Xu, Hisashi Sato, and Guoqing Wang
Geosci. Model Dev., 15, 7075–7098, https://doi.org/10.5194/gmd-15-7075-2022, https://doi.org/10.5194/gmd-15-7075-2022, 2022
Short summary
Short summary
Plant carbon storage potential is central to moderate atmospheric CO2 concentration buildup and mitigation of climate change. There is an ongoing debate about the main driver of carbon storage. To reconcile this discrepancy, we use SEIB-DGVM to investigate the trend and response mechanism of carbon stock fractions among water limitation regions. Results show that the impact of CO2 and temperature on carbon stock depends on water limitation, offering a new perspective on carbon–water coupling.
Jing Fang, Herman H. Shugart, Feng Liu, Xiaodong Yan, Yunkun Song, and Fucheng Lv
Geosci. Model Dev., 15, 6863–6872, https://doi.org/10.5194/gmd-15-6863-2022, https://doi.org/10.5194/gmd-15-6863-2022, 2022
Short summary
Short summary
Our study provided a detailed description and a package of an individual tree-based carbon model, FORCCHN2. This model used non-structural carbohydrate (NSC) pools to couple tree growth and phenology. The model could reproduce daily carbon fluxes across Northern Hemisphere forests. Given the potential importance of the application of this model, there is substantial scope for using FORCCHN2 in fields as diverse as forest ecology, climate change, and carbon estimation.
Maureen Beaudor, Nicolas Vuichard, Juliette Lathière, Nikolaos Evangeliou, Martin Van Damme, Lieven Clarisse, and Didier Hauglustaine
EGUsphere, https://doi.org/10.5194/egusphere-2022-626, https://doi.org/10.5194/egusphere-2022-626, 2022
Short summary
Short summary
Ammonia mainly comes from the agricultural sector and its volatilization relies on environmental variables. Our approach aims at benefiting from an Earth System Model framework to estimate it. By doing so, we represent a consistent spatial distribution of the emissions replying to environmental changes. We greatly improved the seasonal cycle of the emissions compared to previous works. In addition, our model includes natural soil emissions, almost never represented in the modeling approaches.
Johannes Oberpriller, Christine Herschlein, Peter Anthoni, Almut Arneth, Andreas Krause, Anja Rammig, Mats Lindeskog, Stefan Olin, and Florian Hartig
Geosci. Model Dev., 15, 6495–6519, https://doi.org/10.5194/gmd-15-6495-2022, https://doi.org/10.5194/gmd-15-6495-2022, 2022
Short summary
Short summary
Understanding uncertainties of projected ecosystem dynamics under environmental change is of immense value for research and climate change policy. Here, we analyzed these across European forests. We find that uncertainties are dominantly induced by parameters related to water, mortality, and climate, with an increasing importance of climate from north to south. These results highlight that climate not only contributes uncertainty but also modifies uncertainties in other ecosystem processes.
Rui Ying, Fanny M. Monteiro, Jamie D. Wilson, and Daniela N. Schmidt
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2022-177, https://doi.org/10.5194/gmd-2022-177, 2022
Revised manuscript accepted for GMD
Short summary
Short summary
Planktic foraminifera are marine calcifying zooplankton and their shell are widely used as to measure past temperature and productivity. Here we developed ForamECOGENIE model to simulate the four subgroups of this organism. We found the relative abundance distribution agrees with core top data and carbon flux is comparable to sediment trap observation. This model provides opportunity to study foraminifera ecology in any geological time.
Marcus Falls, Raffaele Bernardello, Miguel Castrillo, Mario Acosta, Joan Llort, and Martí Galí
Geosci. Model Dev., 15, 5713–5737, https://doi.org/10.5194/gmd-15-5713-2022, https://doi.org/10.5194/gmd-15-5713-2022, 2022
Short summary
Short summary
This paper describes and tests a method which uses a genetic algorithm (GA), a type of optimisation algorithm, on an ocean biogeochemical model. The aim is to produce a set of numerical parameters that best reflect the observed data of particulate organic carbon in a specific region of the ocean. We show that the GA can provide optimised model parameters in a robust and efficient manner and can also help detect model limitations, ultimately leading to a reduction in the model uncertainties.
Julien Ruffault, François Pimont, Hervé Cochard, Jean-Luc Dupuy, and Nicolas Martin-StPaul
Geosci. Model Dev., 15, 5593–5626, https://doi.org/10.5194/gmd-15-5593-2022, https://doi.org/10.5194/gmd-15-5593-2022, 2022
Short summary
Short summary
A widespread increase in tree mortality has been observed around the globe, and this trend is likely to continue because of ongoing climate change. Here we present SurEau-Ecos, a trait-based plant hydraulic model to predict tree desiccation and mortality. SurEau-Ecos can help determine the areas and ecosystems that are most vulnerable to drying conditions.
Mahdi André Nakhavali, Lina M. Mercado, Iain P. Hartley, Stephen Sitch, Fernanda V. Cunha, Raffaello di Ponzio, Laynara F. Lugli, Carlos A. Quesada, Kelly M. Andersen, Sarah E. Chadburn, Andy J. Wiltshire, Douglas B. Clark, Gyovanni Ribeiro, Lara Siebert, Anna C. M. Moraes, Jéssica Schmeisk Rosa, Rafael Assis, and José L. Camargo
Geosci. Model Dev., 15, 5241–5269, https://doi.org/10.5194/gmd-15-5241-2022, https://doi.org/10.5194/gmd-15-5241-2022, 2022
Short summary
Short summary
In tropical ecosystems, the availability of rock-derived elements such as P can be very low. Thus, without a representation of P cycling, tropical forest responses to rising atmospheric CO2 conditions in areas such as Amazonia remain highly uncertain. We introduced P dynamics and its interactions with the N and P cycles into the JULES model. Our results highlight the potential for high P limitation and therefore lower CO2 fertilization capacity in the Amazon forest with low-fertility soils.
Olga Dombrowski, Cosimo Brogi, Harrie-Jan Hendricks Franssen, Damiano Zanotelli, and Heye Bogena
Geosci. Model Dev., 15, 5167–5193, https://doi.org/10.5194/gmd-15-5167-2022, https://doi.org/10.5194/gmd-15-5167-2022, 2022
Short summary
Short summary
Soil carbon storage and food production of fruit orchards will be influenced by climate change. However, they lack representation in models that study such processes. We developed and tested a new sub-model, CLM5-FruitTree, that describes growth, biomass distribution, and management practices in orchards. The model satisfactorily predicted yield and exchange of carbon, energy, and water in an apple orchard and can be used to study land surface processes in fruit orchards at different scales.
Jiaying Zhang, Rafael L. Bras, Marcos Longo, and Tamara Heartsill Scalley
Geosci. Model Dev., 15, 5107–5126, https://doi.org/10.5194/gmd-15-5107-2022, https://doi.org/10.5194/gmd-15-5107-2022, 2022
Short summary
Short summary
We implemented hurricane disturbance in a vegetation dynamics model and calibrated the model with observations of a tropical forest. We used the model to study forest recovery from hurricane disturbance and found that a single hurricane disturbance enhances AGB and BA in the long term compared with a no-hurricane situation. The model developed and results presented in this study can be utilized to understand the impact of hurricane disturbances on forest recovery under the changing climate.
Prabhat Raj Dahal, Maria Lumbierres, Stuart H. M. Butchart, Paul F. Donald, and Carlo Rondinini
Geosci. Model Dev., 15, 5093–5105, https://doi.org/10.5194/gmd-15-5093-2022, https://doi.org/10.5194/gmd-15-5093-2022, 2022
Short summary
Short summary
This paper describes the validation of area of habitat (AOH) maps produced for terrestrial birds and mammals. The main objective was to assess the accuracy of the maps based on independent data. We used open access data from repositories, such as ebird and gbif to check if our maps were a better reflection of species' distribution than random. When points were not available we used logistic models to validate the AOH maps. The majority of AOH maps were found to have a high accuracy.
Yoshiki Kanzaki, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 15, 4959–4990, https://doi.org/10.5194/gmd-15-4959-2022, https://doi.org/10.5194/gmd-15-4959-2022, 2022
Short summary
Short summary
Increasing carbon dioxide in the atmosphere is an urgent issue in the coming century. Enhanced rock weathering in soils can be one of the most efficient C capture strategies. On the basis as a weathering simulator, the newly developed SCEPTER model implements bio-mixing by fauna/humans and enables organic matter and crushed rocks/minerals at the soil surface with an option to track their particle size distributions. Those features can be useful for evaluating the carbon capture efficiency.
Félicien Meunier, Sruthi M. Krishna Moorthy, Marc Peaucelle, Kim Calders, Louise Terryn, Wim Verbruggen, Chang Liu, Ninni Saarinen, Niall Origo, Joanne Nightingale, Mathias Disney, Yadvinder Malhi, and Hans Verbeeck
Geosci. Model Dev., 15, 4783–4803, https://doi.org/10.5194/gmd-15-4783-2022, https://doi.org/10.5194/gmd-15-4783-2022, 2022
Short summary
Short summary
We integrated state-of-the-art observations of the structure of the vegetation in a temperate forest to constrain a vegetation model that aims to reproduce such an ecosystem in silico. We showed that the use of this information helps to constrain the model structure, its critical parameters, as well as its initial state. This research confirms the critical importance of the representation of the vegetation structure in vegetation models and proposes a method to overcome this challenge.
Joe R. Melton, Ed Chan, Koreen Millard, Matthew Fortier, R. Scott Winton, Javier M. Martín-López, Hinsby Cadillo-Quiroz, Darren Kidd, and Louis V. Verchot
Geosci. Model Dev., 15, 4709–4738, https://doi.org/10.5194/gmd-15-4709-2022, https://doi.org/10.5194/gmd-15-4709-2022, 2022
Short summary
Short summary
Peat-ML is a high-resolution global peatland extent map generated using machine learning techniques. Peatlands are important in the global carbon and water cycles, but their extent is poorly known. We generated Peat-ML using drivers of peatland formation including climate, soil, geomorphology, and vegetation data, and we train the model with regional peatland maps. Our accuracy estimation approaches suggest Peat-ML is of similar or higher quality than other available peatland mapping products.
Qianyu Li, Shawn P. Serbin, Julien Lamour, Kenneth J. Davidson, Kim S. Ely, and Alistair Rogers
Geosci. Model Dev., 15, 4313–4329, https://doi.org/10.5194/gmd-15-4313-2022, https://doi.org/10.5194/gmd-15-4313-2022, 2022
Short summary
Short summary
Stomatal conductance is the rate of water release from leaves’ pores. We implemented an optimal stomatal conductance model in a vegetation model. We then tested and compared it with the existing empirical model in terms of model responses to key environmental variables. We also evaluated the model with measurements at a tropical forest site. Our study suggests that the parameterization of conductance models and current model response to drought are the critical areas for improving models.
Veli Çağlar Yumruktepe, Annette Samuelsen, and Ute Daewel
Geosci. Model Dev., 15, 3901–3921, https://doi.org/10.5194/gmd-15-3901-2022, https://doi.org/10.5194/gmd-15-3901-2022, 2022
Short summary
Short summary
We describe the coupled bio-physical model ECOSMO II(CHL), which is used for regional configurations for the North Atlantic and the Arctic hind-casting and operational purposes. The model is consistent with the large-scale climatological nutrient settings and is capable of representing regional and seasonal changes, and model primary production agrees with previous measurements. For the users of this model, this paper provides the underlying science, model evaluation and its development.
Nicolas Azaña Schnedler-Meyer, Tobias Kuhlmann Andersen, Fenjuan Rose Schmidt Hu, Karsten Bolding, Anders Nielsen, and Dennis Trolle
Geosci. Model Dev., 15, 3861–3878, https://doi.org/10.5194/gmd-15-3861-2022, https://doi.org/10.5194/gmd-15-3861-2022, 2022
Short summary
Short summary
We present the Water Ecosystems Tool (WET) – a new modular aquatic ecosystem model configurable to a wide array of physical setups, ecosystems and research questions based on the popular FABM–PCLake model. We aim for the model to become a community staple, thus helping to consolidate the state of the art under a few flexible models, with the aim of improving comparability across studies and preventing the
re-inventions of the wheelthat are common to our scientific modeling community.
Hamze Dokoohaki, Bailey D. Morrison, Ann Raiho, Shawn P. Serbin, Katie Zarada, Luke Dramko, and Michael Dietze
Geosci. Model Dev., 15, 3233–3252, https://doi.org/10.5194/gmd-15-3233-2022, https://doi.org/10.5194/gmd-15-3233-2022, 2022
Short summary
Short summary
We present a new terrestrial carbon cycle data assimilation system, built on the PEcAn model–data eco-informatics system, and its application for the development of a proof-of-concept carbon
reanalysisproduct that harmonizes carbon pools (leaf, wood, soil) and fluxes (GPP, Ra, Rh, NEE) across the contiguous United States from 1986–2019. Here, we build on a decade of work on uncertainty propagation to generate the most complete and robust uncertainty accounting available to date.
Hisashi Sato and Takeshi Ise
Geosci. Model Dev., 15, 3121–3132, https://doi.org/10.5194/gmd-15-3121-2022, https://doi.org/10.5194/gmd-15-3121-2022, 2022
Short summary
Short summary
Accurately predicting global coverage of terrestrial biome is one of the earliest ecological concerns, and many empirical schemes have been proposed to characterize their relationship. Here, we demonstrate an accurate and practical method to construct empirical models for operational biome mapping via a convolutional neural network (CNN) approach.
Licheng Liu, Shaoming Xu, Jinyun Tang, Kaiyu Guan, Timothy J. Griffis, Matthew D. Erickson, Alexander L. Frie, Xiaowei Jia, Taegon Kim, Lee T. Miller, Bin Peng, Shaowei Wu, Yufeng Yang, Wang Zhou, Vipin Kumar, and Zhenong Jin
Geosci. Model Dev., 15, 2839–2858, https://doi.org/10.5194/gmd-15-2839-2022, https://doi.org/10.5194/gmd-15-2839-2022, 2022
Short summary
Short summary
By incorporating the domain knowledge into a machine learning model, KGML-ag overcomes the well-known limitations of process-based models due to insufficient representations and constraints, and unlocks the “black box” of machine learning models. Therefore, KGML-ag can outperform existing approaches on capturing the hot moment and complex dynamics of N2O flux. This study will be a critical reference for the new generation of modeling paradigm for biogeochemistry and other geoscience processes.
Elodie Salmon, Fabrice Jégou, Bertrand Guenet, Line Jourdain, Chunjing Qiu, Vladislav Bastrikov, Christophe Guimbaud, Dan Zhu, Philippe Ciais, Philippe Peylin, Sébastien Gogo, Fatima Laggoun-Défarge, Mika Aurela, M. Syndonia Bret-Harte, Jiquan Chen, Bogdan H. Chojnicki, Housen Chu, Colin W. Edgar, Eugenie S. Euskirchen, Lawrence B. Flanagan, Krzysztof Fortuniak, David Holl, Janina Klatt, Olaf Kolle, Natalia Kowalska, Lars Kutzbach, Annalea Lohila, Lutz Merbold, Włodzimierz Pawlak, Torsten Sachs, and Klaudia Ziemblińska
Geosci. Model Dev., 15, 2813–2838, https://doi.org/10.5194/gmd-15-2813-2022, https://doi.org/10.5194/gmd-15-2813-2022, 2022
Short summary
Short summary
A methane model that features methane production and transport by plants, the ebullition process and diffusion in soil, oxidation to CO2, and CH4 fluxes to the atmosphere has been embedded in the ORCHIDEE-PEAT land surface model, which includes an explicit representation of northern peatlands. This model, ORCHIDEE-PCH4, was calibrated and evaluated on 14 peatland sites. Results show that the model is sensitive to temperature and substrate availability over the top 75 cm of soil depth.
Suman Halder, Susanne K. M. Arens, Kai Jensen, Tais W. Dahl, and Philipp Porada
Geosci. Model Dev., 15, 2325–2343, https://doi.org/10.5194/gmd-15-2325-2022, https://doi.org/10.5194/gmd-15-2325-2022, 2022
Short summary
Short summary
A dynamic vegetation model, designed to estimate potential impacts of early vascular vegetation, namely, lycopsids, on the biogeochemical cycle at a local scale. Lycopsid Model (LYCOm) estimates the productivity and physiological properties of lycopsids across a broad climatic range along with natural selection, which is then utilized to adjudge their weathering potential. It lays the foundation for estimation of their impacts during their long evolutionary history starting from the Ordovician.
Dóra Hidy, Zoltán Barcza, Roland Hollós, Laura Dobor, Tamás Ács, Dóra Zacháry, Tibor Filep, László Pásztor, Dóra Incze, Márton Dencső, Eszter Tóth, Katarína Merganičová, Peter Thornton, Steven Running, and Nándor Fodor
Geosci. Model Dev., 15, 2157–2181, https://doi.org/10.5194/gmd-15-2157-2022, https://doi.org/10.5194/gmd-15-2157-2022, 2022
Short summary
Short summary
Biogeochemical models used by the scientific community can support society in the quantification of the expected environmental impacts caused by global climate change. The Biome-BGCMuSo v6.2 biogeochemical model has been created by implementing a lot of developments related to soil hydrology as well as the soil carbon and nitrogen cycle and by integrating crop model components. Detailed descriptions of developments with case studies are presented in this paper.
Lei Ma, George Hurtt, Lesley Ott, Ritvik Sahajpal, Justin Fisk, Rachel Lamb, Hao Tang, Steve Flanagan, Louise Chini, Abhishek Chatterjee, and Joseph Sullivan
Geosci. Model Dev., 15, 1971–1994, https://doi.org/10.5194/gmd-15-1971-2022, https://doi.org/10.5194/gmd-15-1971-2022, 2022
Short summary
Short summary
We present a global version of the Ecosystem Demography (ED) model which can track vegetation 3-D structure and scale up ecological processes from individual vegetation to ecosystem scale. Model evaluation against multiple benchmarking datasets demonstrated the model’s capability to simulate global vegetation dynamics across a range of temporal and spatial scales. With this version, ED has the potential to be linked with remote sensing observations to address key scientific questions.
Ignacio Hermoso de Mendoza, Etienne Boucher, Fabio Gennaretti, Aliénor Lavergne, Robert Field, and Laia Andreu-Hayles
Geosci. Model Dev., 15, 1931–1952, https://doi.org/10.5194/gmd-15-1931-2022, https://doi.org/10.5194/gmd-15-1931-2022, 2022
Short summary
Short summary
We modify the numerical model of forest growth MAIDENiso by explicitly simulating snow. This allows us to use the model in boreal environments, where snow is dominant. We tested the performance of the model before and after adding snow, using it at two Canadian sites to simulate tree-ring isotopes and comparing with local observations. We found that modelling snow improves significantly the simulation of the hydrological cycle, the plausibility of the model and the simulated isotopes.
Toni Viskari, Janne Pusa, Istem Fer, Anna Repo, Julius Vira, and Jari Liski
Geosci. Model Dev., 15, 1735–1752, https://doi.org/10.5194/gmd-15-1735-2022, https://doi.org/10.5194/gmd-15-1735-2022, 2022
Short summary
Short summary
We wanted to examine how the chosen measurement data and calibration process affect soil organic carbon model calibration. In our results we found that there is a benefit in using data from multiple litter-bag decomposition experiments simultaneously, even with the required assumptions. Additionally, due to the amount of noise and uncertainties in the system, more advanced calibration methods should be used to parameterize the models.
Glenn E. Hammond
Geosci. Model Dev., 15, 1659–1676, https://doi.org/10.5194/gmd-15-1659-2022, https://doi.org/10.5194/gmd-15-1659-2022, 2022
Short summary
Short summary
This paper describes a simplified interface for implementing and testing new chemical reactions within the reactive transport simulator PFLOTRAN. The paper describes the interface, providing example code for the interface. The paper includes several chemical reactions implemented through the interface.
Sarah E. Chadburn, Eleanor J. Burke, Angela V. Gallego-Sala, Noah D. Smith, M. Syndonia Bret-Harte, Dan J. Charman, Julia Drewer, Colin W. Edgar, Eugenie S. Euskirchen, Krzysztof Fortuniak, Yao Gao, Mahdi Nakhavali, Włodzimierz Pawlak, Edward A. G. Schuur, and Sebastian Westermann
Geosci. Model Dev., 15, 1633–1657, https://doi.org/10.5194/gmd-15-1633-2022, https://doi.org/10.5194/gmd-15-1633-2022, 2022
Short summary
Short summary
We present a new method to include peatlands in an Earth system model (ESM). Peatlands store huge amounts of carbon that accumulates very slowly but that can be rapidly destabilised, emitting greenhouse gases. Our model captures the dynamic nature of peat by simulating the change in surface height and physical properties of the soil as carbon is added or decomposed. Thus, we model, for the first time in an ESM, peat dynamics and its threshold behaviours that can lead to destabilisation.
Philippe Ciais, Ana Bastos, Frédéric Chevallier, Ronny Lauerwald, Ben Poulter, Josep G. Canadell, Gustaf Hugelius, Robert B. Jackson, Atul Jain, Matthew Jones, Masayuki Kondo, Ingrid T. Luijkx, Prabir K. Patra, Wouter Peters, Julia Pongratz, Ana Maria Roxana Petrescu, Shilong Piao, Chunjing Qiu, Celso Von Randow, Pierre Regnier, Marielle Saunois, Robert Scholes, Anatoly Shvidenko, Hanqin Tian, Hui Yang, Xuhui Wang, and Bo Zheng
Geosci. Model Dev., 15, 1289–1316, https://doi.org/10.5194/gmd-15-1289-2022, https://doi.org/10.5194/gmd-15-1289-2022, 2022
Short summary
Short summary
The second phase of the Regional Carbon Cycle Assessment and Processes (RECCAP) will provide updated quantification and process understanding of CO2, CH4, and N2O emissions and sinks for ten regions of the globe. In this paper, we give definitions, review different methods, and make recommendations for estimating different components of the total land–atmosphere carbon exchange for each region in a consistent and complete approach.
Nils Wallenberg, Fredrik Lindberg, and David Rayner
Geosci. Model Dev., 15, 1107–1128, https://doi.org/10.5194/gmd-15-1107-2022, https://doi.org/10.5194/gmd-15-1107-2022, 2022
Short summary
Short summary
Exposure to solar radiation on clear and warm days can lead to heat stress and thermal discomfort. This can be alleviated by planting trees providing shade in particularly warm areas. Here, we use a model to locate trees and optimize their blocking of solar radiation. Our results show that locations can differ depending, e.g., tree size (juvenile or mature) and number of trees that are positioned simultaneously. The model is available as a tool for accessibility by researchers and others.
Kai Wang, Xiujun Wang, Raghu Murtugudde, Dongxiao Zhang, and Rong-Hua Zhang
Geosci. Model Dev., 15, 1017–1035, https://doi.org/10.5194/gmd-15-1017-2022, https://doi.org/10.5194/gmd-15-1017-2022, 2022
Short summary
Short summary
We use observational data of dissolved oxygen (DO) and organic nitrogen to calibrate a basin-scale model (OGCM-DEMC V1.4) and then evaluate model capacity for simulating mid-depth DO in the tropical Pacific. Sensitivity studies show that enhanced vertical mixing combined with reduced biological consumption performs well in reproducing asymmetric oxygen minimum zones (OMZs). We find that DO is more sensitive to biological processes in the upper OMZs but to physical processes in the lower OMZs.
Pedro Duarte, Philipp Assmy, Karley Campbell, and Arild Sundfjord
Geosci. Model Dev., 15, 841–857, https://doi.org/10.5194/gmd-15-841-2022, https://doi.org/10.5194/gmd-15-841-2022, 2022
Short summary
Short summary
Sea ice modeling is an important part of Earth system models (ESMs). The results of ESMs are used by the Intergovernmental Panel on Climate Change in their reports. In this study we present an improvement to calculate the exchange of nutrients between the ocean and the sea ice. This nutrient exchange is an essential process to keep the ice-associated ecosystem functioning. We found out that previous calculation methods may underestimate the primary production of the ice-associated ecosystem.
Jianyong Ma, Stefan Olin, Peter Anthoni, Sam S. Rabin, Anita D. Bayer, Sylvia S. Nyawira, and Almut Arneth
Geosci. Model Dev., 15, 815–839, https://doi.org/10.5194/gmd-15-815-2022, https://doi.org/10.5194/gmd-15-815-2022, 2022
Short summary
Short summary
The implementation of the biological N fixation process in LPJ-GUESS in this study provides an opportunity to quantify N fixation rates between legumes and to better estimate grain legume production on a global scale. It also helps to predict and detect the potential contribution of N-fixing plants as
green manureto reducing or removing the use of N fertilizer in global agricultural systems, considering different climate conditions, management practices, and land-use change scenarios.
Giannis Sofiadis, Eleni Katragkou, Edouard L. Davin, Diana Rechid, Nathalie de Noblet-Ducoudre, Marcus Breil, Rita M. Cardoso, Peter Hoffmann, Lisa Jach, Ronny Meier, Priscilla A. Mooney, Pedro M. M. Soares, Susanna Strada, Merja H. Tölle, and Kirsten Warrach Sagi
Geosci. Model Dev., 15, 595–616, https://doi.org/10.5194/gmd-15-595-2022, https://doi.org/10.5194/gmd-15-595-2022, 2022
Short summary
Short summary
Afforestation is currently promoted as a greenhouse gas mitigation strategy. In our study, we examine the differences in soil temperature and moisture between grounds covered either by forests or grass. The main conclusion emerged is that forest-covered grounds are cooler but drier than open lands in summer. Therefore, afforestation disrupts the seasonal cycle of soil temperature, which in turn could trigger changes in crucial chemical processes such as soil carbon sequestration.
Wei Zhi, Yuning Shi, Hang Wen, Leila Saberi, Gene-Hua Crystal Ng, Kayalvizhi Sadayappan, Devon Kerins, Bryn Stewart, and Li Li
Geosci. Model Dev., 15, 315–333, https://doi.org/10.5194/gmd-15-315-2022, https://doi.org/10.5194/gmd-15-315-2022, 2022
Short summary
Short summary
Watersheds are the fundamental Earth surface functioning unit that connects the land to aquatic systems. Here we present the recently developed BioRT-Flux-PIHM v1.0, a watershed-scale biogeochemical reactive transport model, to improve our ability to understand and predict solute export and water quality. The model has been verified against the benchmark code CrunchTope and has recently been applied to understand reactive transport processes in multiple watersheds of different conditions.
Huilin Huang, Yongkang Xue, Ye Liu, Fang Li, and Gregory S. Okin
Geosci. Model Dev., 14, 7639–7657, https://doi.org/10.5194/gmd-14-7639-2021, https://doi.org/10.5194/gmd-14-7639-2021, 2021
Short summary
Short summary
This study applies a fire-coupled dynamic vegetation model to quantify fire impact at monthly to annual scales. We find fire reduces grass cover by 4–8 % annually for widespread areas in south African savanna and reduces tree cover by 1 % at the periphery of tropical Congolese rainforest. The grass cover reduction peaks at the beginning of the rainy season, which quickly diminishes before the next fire season. In contrast, the reduction of tree cover is irreversible within one growing season.
Karin Kvale, David P. Keller, Wolfgang Koeve, Katrin J. Meissner, Christopher J. Somes, Wanxuan Yao, and Andreas Oschlies
Geosci. Model Dev., 14, 7255–7285, https://doi.org/10.5194/gmd-14-7255-2021, https://doi.org/10.5194/gmd-14-7255-2021, 2021
Short summary
Short summary
We present a new model of biological marine silicate cycling for the University of Victoria Earth System Climate Model (UVic ESCM). This new model adds diatoms, which are a key aspect of the biological carbon pump, to an existing ecosystem model. Our modifications change how the model responds to warming, with net primary production declining more strongly than in previous versions. Diatoms in particular are simulated to decline with climate warming due to their high nutrient requirements.
Shannon de Roos, Gabriëlle J. M. De Lannoy, and Dirk Raes
Geosci. Model Dev., 14, 7309–7328, https://doi.org/10.5194/gmd-14-7309-2021, https://doi.org/10.5194/gmd-14-7309-2021, 2021
Short summary
Short summary
A spatially distributed version of the field-scale crop model AquaCrop v6.1 was developed for applications at various spatial scales. Multi-year 1 km simulations over central Europe were evaluated against biomass and surface soil moisture products derived from optical and microwave satellite missions, as well as in situ observations of soil moisture. The regional version of the AquaCrop model provides a suitable setup for subsequent satellite-based data assimilation.
Philip Pika, Dominik Hülse, and Sandra Arndt
Geosci. Model Dev., 14, 7155–7174, https://doi.org/10.5194/gmd-14-7155-2021, https://doi.org/10.5194/gmd-14-7155-2021, 2021
Short summary
Short summary
OMEN-SED is a model for early diagenesis in marine sediments simulating organic matter (OM) degradation and nutrient dynamics. We replaced the original description with a more realistic one accounting for the widely observed decrease in OM reactivity. The new model reproduces pore water profiles and sediment–water interface fluxes across different environments. This functionality extends the model’s applicability to a broad range of environments and timescales while requiring fewer parameters.
Cited articles
Atkin, O. K., Evans, J. R., and Siebke, K.: Relationship between the
inhibition of leaf respiration by light and enhancement of leaf dark
respiration following light treatment, Funct. Plant Biol., 25,
437–443, https://doi.org/10.1071/PP97159, 1998.
Atkin, O. K., Evans, J. R., Ball, M. C., Lambers, H., and Pons, T. L.: Leaf
Respiration of Snow Gum in the Light and Dark. Interactions between
Temperature and Irradiance1, Plant Physiol., 122, 915–924,
https://doi.org/10.1104/pp.122.3.915, 2000.
Atkin, O. K., Scheurwater, I., and Pons, T. L.: High thermal acclimation
potential of both photosynthesis and respiration in two lowland Plantago
species in contrast to an alpine congeneric, Glob. Change Biol., 12,
500–515, https://doi.org/10.1111/j.1365-2486.2006.01114.x, 2006.
Ball, M. C., Woodrow, I. E., and Berry, J. A.: A model predicting stomatal
conductance and its contribution to the control of photosynthesis under
different environmental conditions, in: Progress in Photosynthesis Research, edited by: Biggins, J., Martinus Nijhoff Publishers, Dordrecht, the Netherlands,
221–224, https://doi.org/10.1007/978-94-017-0519-6_48, 1987.
Benomar, L., Lamhamedi, M. S., Pepin, S., Rainville, A., Lambert, M.-C.,
Margolis, H. A., Bousquet, J., and Beaulieu, J.: Thermal acclimation of
photosynthesis and respiration of southern and northern white spruce seed
sources tested along a regional climatic gradient indicates limited
potential to cope with temperature warming, Ann. Bot.-London, 121, 443–457,
https://doi.org/10.1093/aob/mcx174, 2017.
Bernacchi, C. J., Singsaas, E. L., Pimentel, C., Portis Jr., A. R., and Long,
S. P.: Improved temperature response functions for models of Rubisco-limited
photosynthesis, Plant Cell Environ., 24, 253–259,
https://doi.org/10.1111/j.1365-3040.2001.00668.x, 2001.
Best, M. J., Pryor, M., Clark, D. B., Rooney, G. G., Essery, R. L. H., Ménard, C. B., Edwards, J. M., Hendry, M. A., Porson, A., Gedney, N., Mercado, L. M., Sitch, S., Blyth, E., Boucher, O., Cox, P. M., Grimmond, C. S. B., and Harding, R. J.: The Joint UK Land Environment Simulator (JULES), model description – Part 1: Energy and water fluxes, Geosci. Model Dev., 4, 677–699, https://doi.org/10.5194/gmd-4-677-2011, 2011.
Betts, R. A., Boucher, O., Collins, M., Cox, P. M., Falloon, P. D., Gedney,
N., Hemming, D. L., Huntingford, C., Jones, C. D., Sexton, D. M. H., and
Webb, M. J.: Projected increase in continental runoff due to plant responses
to increasing carbon dioxide, Nature, 448, 1037–1041, https://doi.org/10.1038/nature06045,
2007.
Blyth, E., Clark, D. B., Ellis, R., Huntingford, C., Los, S., Pryor, M., Best, M., and Sitch, S.: A comprehensive set of benchmark tests for a land surface model of simultaneous fluxes of water and carbon at both the global and seasonal scale, Geosci. Model Dev., 4, 255–269, https://doi.org/10.5194/gmd-4-255-2011, 2011.
Booth, B. B. B., Jones, C. D., Collins, M., Totterdell, I. J., Cox, P. M.,
Sitch, S., Huntingford, C., Betts, R. A., Harris, G. R., and Lloyd, J.: High
sensitivity of future global warming to land carbon cycle processes,
Environ. Res. Lett., 7, 024002, https://doi.org/10.1088/1748-9326/7/2/024002,
2012.
Braghiere, R. K., Quaife, T., Black, E., He, L., and Chen, J.:
Underestimation of global photosynthesis in Earth system models due to
representation of vegetation structure, Global Biogeochem. Cy., 33,
1358–1369, 2019.
Braghiere, R. K., Quaife, T., Black, E., Ryu, Y., Chen, Q., De Kauwe, M. G.,
and Baldocchi, D.: Influence of sun zenith angle on canopy clumping and the
resulting impacts on photosynthesis, Agr. Forest Meteorol.,
291, 108065, https://doi.org/10.1016/j.agrformet.2020.108065, 2020.
Braghiere, R. K., Wang, Y., Doughty, R., Sousa, D., Magney, T., Widlowski,
J.-L., Longo, M., Bloom, A. A., Worden, J., Gentine, P., and Frankenberg,
C.: Accounting for canopy structure improves hyperspectral radiative
transfer and sun-induced chlorophyll fluorescence representations in a new
generation Earth System model, Remote Sens. Environ., 261, 112497,
https://doi.org/10.1016/j.rse.2021.112497, 2021.
Carter, K. R., Wood, T. E., Reed, S. C., Schwartz, E. C., Reinsel, M. B.,
Yang, X., and Cavaleri, M. A.: Photosynthetic and Respiratory Acclimation of
Understory Shrubs in Response to in situ Experimental Warming of a Wet
Tropical Forest, Frontiers in Forests and Global Change, 3, 576320,
https://doi.org/10.3389/ffgc.2020.576320, 2020.
Carter, K. R., Wood, T. E., Reed, S. C., Butts, K. M., and Cavaleri, M. A.:
Experimental warming across a tropical forest canopy height gradient reveals
minimal photosynthetic and respiratory acclimation, Plant Cell
Environ., 44, 2879–2897, https://doi.org/10.1111/pce.14134, 2021.
Chen, M. I. N. and Zhuang, Q.: Modelling temperature acclimation effects on
the carbon dynamics of forest ecosystems in the conterminous United States,
Tellus B, 65, 19156,
https://doi.org/10.3402/tellusb.v65i0.19156, 2013.
Clark, D. B.: JULES-VN5.6_acclimation, MetOffice [code], https://code.metoffice.gov.uk/trac/jules/browser/main/branches/dev/douglasclark/vn5.6_acclimation, last access: 14 July 2022.
Clark, D. B., Mercado, L. M., Sitch, S., Jones, C. D., Gedney, N., Best, M. J., Pryor, M., Rooney, G. G., Essery, R. L. H., Blyth, E., Boucher, O., Harding, R. J., Huntingford, C., and Cox, P. M.: The Joint UK Land Environment Simulator (JULES), model description – Part 2: Carbon fluxes and vegetation dynamics, Geosci. Model Dev., 4, 701–722, https://doi.org/10.5194/gmd-4-701-2011, 2011.
Collatz, G., Ribas-Carbo, M., and Berry, J.: Coupled Photosynthesis-Stomatal
Conductance Model for Leaves of C4 Plants, Funct. Plant Biol.,
19, 519–538, https://doi.org/10.1071/PP9920519, 1992.
Collatz, G. J., Ball, J. T., Grivet, C., and Berry, J. A.: Physiological and
environmental regulation of stomatal conductance, photosynthesis and
transpiration: a model that includes a laminar boundary layer, Agr. Forest Meteorol., 54, 107–136, https://doi.org/10.1016/0168-1923(91)90002-8, 1991.
Cox, P. M., Huntingford, C., and Harding, R. J.: A canopy conductance and
photosynthesis model for use in a GCM land surface scheme, J.
Hydrol., 212–213, 79–94, https://doi.org/10.1016/S0022-1694(98)00203-0, 1998.
Croft, H., Chen, J. M., Luo, X., Bartlett, P., Chen, B., and Staebler, R.
M.: Leaf chlorophyll content as a proxy for leaf photosynthetic capacity,
Glob. Change Biol., 23, 3513–3524, https://doi.org/10.1111/gcb.13599, 2017.
Cruz, F. T., Pitman, A. J., and Wang, Y. P.: Can the stomatal response to
higher atmospheric carbon dioxide explain the unusual temperatures during
the 2002 Murray-Darling Basin drought?, J. Geophys. Res.-Atmos., 115, D02101, https://doi.org/10.1029/2009JD012767, 2010.
Cunningham, S. C. and Read, J.: Do temperate rainforest trees have a greater
ability to acclimate to changing temperatures than tropical rainforest
trees?, New Phytol., 157, 55–64, https://doi.org/10.1046/j.1469-8137.2003.00652.x, 2003.
Damour, G., Simonneau, T., Cochard, H., and Urban, L.: An overview of models
of stomatal conductance at the leaf level, Plant Cell Environ., 33,
1419–1438, https://doi.org/10.1111/j.1365-3040.2010.02181.x, 2010.
de Arellano, J. V.-G., van Heerwaarden, C. C., and Lelieveld, J.: Modelled
suppression of boundary-layer clouds by plants in a CO2-rich atmosphere,
Nat. Geosci., 5, 701–704, https://doi.org/10.1038/ngeo1554, 2012.
De Kauwe, M. G., Medlyn, B. E., Zaehle, S., Walker, A. P., Dietze, M. C.,
Hickler, T., Jain, A. K., Luo, Y., Parton, W. J., Prentice, I. C., Smith,
B., Thornton, P. E., Wang, S., Wang, Y.-P., Wårlind, D., Weng, E.,
Crous, K. Y., Ellsworth, D. S., Hanson, P. J., Seok Kim, H.-S., Warren, J.
M., Oren, R., and Norby, R. J.: Forest water use and water use efficiency at
elevated CO2: a model-data intercomparison at two contrasting temperate
forest FACE sites, Glob. Change Biol., 19, 1759–1779, https://doi.org/10.1111/gcb.12164,
2013.
De Kauwe, M. G., Kala, J., Lin, Y.-S., Pitman, A. J., Medlyn, B. E., Duursma, R. A., Abramowitz, G., Wang, Y.-P., and Miralles, D. G.: A test of an optimal stomatal conductance scheme within the CABLE land surface model, Geosci. Model Dev., 8, 431–452, https://doi.org/10.5194/gmd-8-431-2015, 2015.
Doughty, C. E. and Goulden, M. L.: Are tropical forests near a high
temperature threshold?, J. Geophys. Res.-Biogeo.,
113, G00B07, https://doi.org/10.1029/2007JG000632, 2008.
Drake, J. E., Aspinwall, M. J., Pfautsch, S., Rymer, P. D., Reich, P. B.,
Smith, R. A., Crous, K. Y., Tissue, D. T., Ghannoum, O., and Tjoelker, M.
G.: The capacity to cope with climate warming declines from temperate to
tropical latitudes in two widely distributed Eucalyptus species, Glob.
Change Biol., 21, 459–472, https://doi.org/10.1111/gcb.12729, 2015.
Dusenge, M. E., Madhavji, S., and Way, D. A.: Contrasting acclimation
responses to elevated CO2 and warming between an evergreen and a
deciduous boreal conifer, Glob. Change Biol., 26, 3639–3657,
https://doi.org/10.1111/gcb.15084, 2020.
Dusenge, M. E., Wittemann, M., Mujawamariya, M., Ntawuhiganayo, E. B.,
Zibera, E., Ntirugulirwa, B., Way, D. A., Nsabimana, D., Uddling, J., and
Wallin, G.: Limited thermal acclimation of photosynthesis in tropical
montane tree species, Glob. Change Biol., 27, 4860–4878,
https://doi.org/10.1111/gcb.15790, 2021.
Eller, C. B., Rowland, L., Mencuccini, M., Rosas, T., Williams, K., Harper,
A., Medlyn, B. E., Wagner, Y., Klein, T., Teodoro, G. S., Oliveira, R. S.,
Matos, I. S., Rosado, B. H. P., Fuchs, K., Wohlfahrt, G., Montagnani, L.,
Meir, P., Sitch, S., and Cox, P. M.: Stomatal optimization based on xylem
hydraulics (SOX) improves land surface model simulation of vegetation
responses to climate, New Phytol., 226, 1622–1637, https://doi.org/10.1111/nph.16419,
2020.
Erb, K.-H., Kastner, T., Plutzar, C., Bais, A. L. S., Carvalhais, N.,
Fetzel, T., Gingrich, S., Haberl, H., Lauk, C., Niedertscheider, M.,
Pongratz, J., Thurner, M., and Luyssaert, S.: Unexpectedly large impact of
forest management and grazing on global vegetation biomass, Nature, 553,
73–76, https://doi.org/10.1038/nature25138, 2018.
Eyring, V., Bony, S., Meehl, G. A., Senior, C. A., Stevens, B., Stouffer, R. J., and Taylor, K. E.: Overview of the Coupled Model Intercomparison Project Phase 6 (CMIP6) experimental design and organization, Geosci. Model Dev., 9, 1937–1958, https://doi.org/10.5194/gmd-9-1937-2016, 2016.
Farquhar, G. D., von Caemmerer, S., and Berry, J. A.: A biochemical model of
photosynthetic CO2 assimilation in leaves of C3 species, Planta, 149, 78–90,
https://doi.org/10.1007/BF00386231, 1980.
Franks, P. J., Berry, J. A., Lombardozzi, D. L., and Bonan, G. B.: Stomatal
Function across Temporal and Spatial Scales: Deep-Time Trends,
Land-Atmosphere Coupling and Global Models, Plant Physiol., 174, 583–602,
https://doi.org/10.1104/pp.17.00287, 2017.
Franks, P. J., Bonan, G. B., Berry, J. A., Lombardozzi, D. L., Holbrook, N.
M., Herold, N., and Oleson, K. W.: Comparing optimal and empirical stomatal
conductance models for application in Earth system models, Glob. Change
Biol., 24, 5708–5723, https://doi.org/10.1111/gcb.14445, 2018.
Friedlingstein, P., Meinshausen, M., Arora, V. K., Jones, C. D., Anav, A.,
Liddicoat, S. K., and Knutti, R.: Uncertainties in CMIP5 Climate Projections
due to Carbon Cycle Feedbacks, J. Climate, 27, 511–526,
https://doi.org/10.1175/jcli-d-12-00579.1, 2014.
Gedney, N., Cox, P. M., Betts, R. A., Boucher, O., Huntingford, C., and
Stott, P. A.: Detection of a direct carbon dioxide effect in continental
river runoff records, Nature, 439, 835–838, https://doi.org/10.1038/nature04504, 2006.
Guha, A., Han, J., Cummings, C., McLennan, D. A., and Warren, J. M.:
Differential ecophysiological responses and resilience to heat wave events
in four co-occurring temperate tree species, Environ. Res. Lett.,
13, 065008, https://doi.org/10.1088/1748-9326/aabcd8, 2018.
Gunderson, C. A., Norby, R. J., and Wullschleger, S. D.: Acclimation of
photosynthesis and respiration to simulated climatic warming in northern and
southern populations of Acer saccharum: laboratory and field evidence, Tree
Physiol., 20, 87–96, https://doi.org/10.1093/treephys/20.2.87, 2000.
Gunderson, C. A., O'Hara, K. H., Campion, C. M., Walker, A. V., and Edwards,
N. T.: Thermal plasticity of photosynthesis: the role of acclimation in
forest responses to a warming climate, Glob. Change Biol., 16, 2272–2286,
https://doi.org/10.1111/j.1365-2486.2009.02090.x, 2010.
Haarsma, R. J., Roberts, M. J., Vidale, P. L., Senior, C. A., Bellucci, A., Bao, Q., Chang, P., Corti, S., Fučkar, N. S., Guemas, V., von Hardenberg, J., Hazeleger, W., Kodama, C., Koenigk, T., Leung, L. R., Lu, J., Luo, J.-J., Mao, J., Mizielinski, M. S., Mizuta, R., Nobre, P., Satoh, M., Scoccimarro, E., Semmler, T., Small, J., and von Storch, J.-S.: High Resolution Model Intercomparison Project (HighResMIP v1.0) for CMIP6, Geosci. Model Dev., 9, 4185–4208, https://doi.org/10.5194/gmd-9-4185-2016, 2016.
Harper, A. B., Cox, P. M., Friedlingstein, P., Wiltshire, A. J., Jones, C. D., Sitch, S., Mercado, L. M., Groenendijk, M., Robertson, E., Kattge, J., Bönisch, G., Atkin, O. K., Bahn, M., Cornelissen, J., Niinemets, Ü., Onipchenko, V., Peñuelas, J., Poorter, L., Reich, P. B., Soudzilovskaia, N. A., and Bodegom, P. V.: Improved representation of plant functional types and physiology in the Joint UK Land Environment Simulator (JULES v4.2) using plant trait information, Geosci. Model Dev., 9, 2415–2440, https://doi.org/10.5194/gmd-9-2415-2016, 2016.
Harper, A. B., Williams, K. E., McGuire, P. C., Duran Rojas, M. C., Hemming, D., Verhoef, A., Huntingford, C., Rowland, L., Marthews, T., Breder Eller, C., Mathison, C., Nobrega, R. L. B., Gedney, N., Vidale, P. L., Otu-Larbi, F., Pandey, D., Garrigues, S., Wright, A., Slevin, D., De Kauwe, M. G., Blyth, E., Ardö, J., Black, A., Bonal, D., Buchmann, N., Burban, B., Fuchs, K., de Grandcourt, A., Mammarella, I., Merbold, L., Montagnani, L., Nouvellon, Y., Restrepo-Coupe, N., and Wohlfahrt, G.: Improvement of modeling plant responses to low soil moisture in JULESvn4.9 and evaluation against flux tower measurements, Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, 2021.
Harper, A., Williams, K., McGuire, P. C., Duran Rojas, C., and Otu-Larbi, F.: Rose suite u-al752, MetOffice [code], https://code.metoffice.gov.uk/trac/roses-u/browser/a/l/7/5/2/trunk, last access: 14 July 2022.
Hengl, T., de Jesus, J. M., MacMillan, R. A., Batjes, N. H., Heuvelink, G.
B. M., Ribeiro, E., Samuel-Rosa, A., Kempen, B., Leenaars, J. G. B., Walsh,
M. G., and Gonzalez, M. R.: SoilGrids1km – Global Soil Information Based
on Automated Mapping, PLOS ONE, 9, e105992, https://doi.org/10.1371/journal.pone.0105992,
2014.
Hernández, G. G., Winter, K., and Slot, M.: Similar temperature
dependence of photosynthetic parameters in sun and shade leaves of three
tropical tree species, Tree Physiol., 40, 637–651,
https://doi.org/10.1093/treephys/tpaa015, 2020.
Hikosaka, K., Nabeshima, E., and Hiura, T.: Seasonal changes in the
temperature response of photosynthesis in canopy leaves of Quercus crispula
in a cool-temperate forest, Tree Physiol., 27, 1035–1041,
https://doi.org/10.1093/treephys/27.7.1035, 2007.
Hogan, R. J., Quaife, T., and Braghiere, R.: Fast matrix treatment of 3-D radiative transfer in vegetation canopies: SPARTACUS-Vegetation 1.1, Geosci. Model Dev., 11, 339–350, https://doi.org/10.5194/gmd-11-339-2018, 2018.
Huntingford, C. and Oliver, R. J.: Converging towards a common
representation of large-scale photosynthesis, Glob. Change Biol., 27,
716–718, https://doi.org/10.1111/gcb.15398, 2021.
Huntingford, C., Lowe, J. A., Booth, B. B. B., Jones, C. D., Harris, G. R.,
Gohar, L. K., and Meir, P.: Contributions of carbon cycle uncertainty to
future climate projection spread, Tellus B, 61, 355–360, https://doi.org/10.1111/j.1600-0889.2009.00414.x, 2009.
Jacobs, C.: Direct impact of atmospheric CO2 enrichment on regional transpiration, PhD thesis, Wageningen Agricultural University, 1994.
Jarvis, P. G., Monteith, J. L., and Weatherley, P. E.: The interpretation of
the variations in leaf water potential and stomatal conductance found in
canopies in the field, Philos. T. Roy. Soc. B, 273, 593–610, https://doi.org/10.1098/rstb.1976.0035,
1976.
Jasechko, S., Sharp, Z. D., Gibson, J. J., Birks, S. J., Yi, Y., and
Fawcett, P. J.: Terrestrial water fluxes dominated by transpiration, Nature,
496, 347–350, https://doi.org/10.1038/nature11983, 2013.
Jogireddy, V. R., Cox, P. M., Huntingford, C., Harding, R. J., and Mercado,
L. M.: An improved description of canopy light interception for use in a GCM
land-surface scheme: calibration and testing against carbon fluxes at a
coniferous forest, Hadley Centre Technical Note 63, Hadley Centre, Met
Office, Exeter, UK, 2006.
Joseph, T., Whitehead, D., and Turnbull, M. H.: Soil water availability
influences the temperature response of photosynthesis and respiration in a
grass and a woody shrub, Funct. Plant Biol., 41, 468–481,
https://doi.org/10.1071/FP13237, 2014.
Jung, M., Koirala, S., Weber, U., Ichii, K., Gans, F., Camps-Valls, G.,
Papale, D., Schwalm, C., Tramontana, G., and Reichstein, M.: The FLUXCOM
ensemble of global land-atmosphere energy fluxes, Sci. Data, 6, 74,
https://doi.org/10.1038/s41597-019-0076-8, 2019.
Jung, M., Schwalm, C., Migliavacca, M., Walther, S., Camps-Valls, G., Koirala, S., Anthoni, P., Besnard, S., Bodesheim, P., Carvalhais, N., Chevallier, F., Gans, F., Goll, D. S., Haverd, V., Köhler, P., Ichii, K., Jain, A. K., Liu, J., Lombardozzi, D., Nabel, J. E. M. S., Nelson, J. A., O'Sullivan, M., Pallandt, M., Papale, D., Peters, W., Pongratz, J., Rödenbeck, C., Sitch, S., Tramontana, G., Walker, A., Weber, U., and Reichstein, M.: Scaling carbon fluxes from eddy covariance sites to globe: synthesis and evaluation of the FLUXCOM approach, Biogeosciences, 17, 1343–1365, https://doi.org/10.5194/bg-17-1343-2020, 2020.
Kala, J., De Kauwe, M. G., Pitman, A. J., Lorenz, R., Medlyn, B. E., Wang, Y.-P., Lin, Y.-S., and Abramowitz, G.: Implementation of an optimal stomatal conductance scheme in the Australian Community Climate Earth Systems Simulator (ACCESS1.3b), Geosci. Model Dev., 8, 3877–3889, https://doi.org/10.5194/gmd-8-3877-2015, 2015.
Kala, J., De Kauwe, M. G., Pitman, A. J., Medlyn, B. E., Wang, Y.-P.,
Lorenz, R., and Perkins-Kirkpatrick, S. E.: Impact of the representation of
stomatal conductance on model projections of heatwave intensity, Sci.
Rep.-UK, 6, 23418, https://doi.org/10.1038/srep23418, 2016.
Kattge, J. and Knorr, W.: Temperature acclimation in a biochemical model of
photosynthesis: a reanalysis of data from 36 species, Plant Cell
Environ., 30, 1176–1190, https://doi.org/10.1111/j.1365-3040.2007.01690.x, 2007.
Keenan, T. F., Luo, X., De Kauwe, M. G., Medlyn, B. E., Prentice, I. C.,
Stocker, B. D., Smith, N. G., Terrer, C., Wang, H., Zhang, Y., and Zhou, S.:
A constraint on historic growth in global photosynthesis due to increasing
CO2, Nature, 600, 253–258, https://doi.org/10.1038/s41586-021-04096-9, 2021.
Kobayashi, H., Baldocchi, D. D., Ryu, Y., Chen, Q., Ma, S., Osuna, J. L.,
and Ustin, S. L.: Modeling energy and carbon fluxes in a heterogeneous oak
woodland: A three-dimensional approach, Agr. Forest Meteorol.,
152, 83–100, 2012.
Kooperman, G. J., Chen, Y., Hoffman, F. M., Koven, C. D., Lindsay, K.,
Pritchard, M. S., Swann, A. L. S., and Randerson, J. T.: Forest response to
rising CO2 drives zonally asymmetric rainfall change over tropical land,
Nat. Clim. Change, 8, 434–440, https://doi.org/10.1038/s41558-018-0144-7, 2018.
Krinner, G., Viovy, N., de Noblet-Ducoudré, N., Ogée, J., Polcher,
J., Friedlingstein, P., Ciais, P., Sitch, S., and Prentice, I. C.: A dynamic
global vegetation model for studies of the coupled atmosphere-biosphere
system, Global Biogeochem. Cy., 19, GB1015, https://doi.org/10.1029/2003GB002199, 2005.
Kroner, Y. and Way, D. A.: Carbon fluxes acclimate more strongly to elevated
growth temperatures than to elevated CO2 concentrations in a northern
conifer, Glob. Change Biol., 22, 2913–2928, https://doi.org/10.1111/gcb.13215, 2016.
Kumarathunge, D. P., Medlyn, B. E., Drake, J. E., Rogers, A., and Tjoelker,
M. G.: No evidence for triose phosphate limitation of light-saturated leaf
photosynthesis under current atmospheric CO2 concentration, Plant Cell
Environ., 42, 3241–3252, https://doi.org/10.1111/pce.13639, 2019a.
Kumarathunge, D. P., Medlyn, B. E., Drake, J. E., Tjoelker, M. G.,
Aspinwall, M. J., Battaglia, M., Cano, F. J., Carter, K. R., Cavaleri, M.
A., Cernusak, L. A., Chambers, J. Q., Crous, K. Y., De Kauwe, M. G.,
Dillaway, D. N., Dreyer, E., Ellsworth, D. S., Ghannoum, O., Han, Q.,
Hikosaka, K., Jensen, A. M., Kelly, J. W. G., Kruger, E. L., Mercado, L. M.,
Onoda, Y., Reich, P. B., Rogers, A., Slot, M., Smith, N. G., Tarvainen, L.,
Tissue, D. T., Togashi, H. F., Tribuzy, E. S., Uddling, J., Vårhammar,
A., Wallin, G., Warren, J. M., and Way, D. A.: Acclimation and adaptation
components of the temperature dependence of plant photosynthesis at the
global scale, New Phytol., 222, 768–784, https://doi.org/10.1111/nph.15668, 2019b.
Kurepin, L. V., Stangl, Z. R., Ivanov, A. G., Bui, V., Mema, M., Hüner,
N. P. A., Öquist, G., Way, D., and Hurry, V.: Contrasting acclimation
abilities of two dominant boreal conifers to elevated CO2 and
temperature, Plant Cell Environ., 41, 1331–1345, https://doi.org/10.1111/pce.13158,
2018.
Leuning, R.: A critical appraisal of a combined stomatal-photosynthesis
model for C3 plants, Plant Cell Environ., 18, 339–355,
https://doi.org/10.1111/j.1365-3040.1995.tb00370.x, 1995.
Lin, Y.-S., Medlyn, B. E., Duursma, R. A., Prentice, I. C., Wang, H., Baig,
S., Eamus, D., de Dios, V. R., Mitchell, P., Ellsworth, D. S., de Beeck,
M. O., Wallin, G., Uddling, J., Tarvainen, L., Linderson, M.-L., Cernusak,
L. A., Nippert, J. B., Ocheltree, T. W., Tissue, D. T., Martin-StPaul, N.
K., Rogers, A., Warren, J. M., De Angelis, P., Hikosaka, K., Han, Q., Onoda,
Y., Gimeno, T. E., Barton, C. V. M., Bennie, J., Bonal, D., Bosc, A.,
Löw, M., Macinins-Ng, C., Rey, A., Rowland, L., Setterfield, S. A.,
Tausz-Posch, S., Zaragoza-Castells, J., Broadmeadow, M. S. J., Drake, J. E.,
Freeman, M., Ghannoum, O., Hutley, L. B., Kelly, J. W., Kikuzawa, K.,
Kolari, P., Koyama, K., Limousin, J.-M., Meir, P., Lola da Costa, A. C.,
Mikkelsen, T. N., Salinas, N., Sun, W., and Wingate, L.: Optimal stomatal
behaviour around the world, Nat. Clim. Change, 5, 459–464,
https://doi.org/10.1038/nclimate2550, 2015.
Liu, H., Randerson, J. T., Lindfors, J., Massman, W. J., and Foken, T.:
Consequences of Incomplete Surface Energy Balance Closure for CO2 Fluxes
from Open-Path CO2/H2O Infrared Gas Analysers, Bound.-Lay. Meteorol.,
120, 65–85, https://doi.org/10.1007/s10546-005-9047-z, 2006.
Loew, A., van Bodegom, P. M., Widlowski, J.-L., Otto, J., Quaife, T., Pinty, B., and Raddatz, T.: Do we (need to) care about canopy radiation schemes in DGVMs? Caveats and potential impacts, Biogeosciences, 11, 1873–1897, https://doi.org/10.5194/bg-11-1873-2014, 2014.
Lombardozzi, D. L., Bonan, G. B., Smith, N. G., Dukes, J. S., and Fisher, R.
A.: Temperature acclimation of photosynthesis and respiration: A key
uncertainty in the carbon cycle-climate feedback, Geophys. Res.
Lett., 42, 8624–8631, https://doi.org/10.1002/2015GL065934, 2015.
Mau, A. C., Reed, S. C., Wood, T. E., and Cavaleri, M. A.: Temperate and
Tropical Forest Canopies are Already Functioning beyond Their Thermal
Thresholds for Photosynthesis, Forests, 9, 47, https://doi.org/10.3390/f9010047, 2018.
McGuire, P. C., Vidale, P. L., Oliver, R. J., Lister, G. M. S., Martinez de la Torre, A., Müller, O. V., and Todt, M.: Rose suite u-bq898, MetOffice [code], https://code.metoffice.gov.uk/trac/roses-u/browser/b/q/8/9/8/trunk, last access: 14 July 2022.
Medlyn, B. E., Loustau, D., and Delzon, S.: Temperature response of
parameters of a biochemically based model of photosynthesis. I. Seasonal
changes in mature maritime pine (Pinus pinaster Ait.), Plant Cell
Environ., 25, 1155–1165, https://doi.org/10.1046/j.1365-3040.2002.00890.x, 2002.
Medlyn, B. E., Duursma, R. A., Eamus, D., Ellsworth, D. S., Prentice, I. C.,
Barton, C. V. M., Crous, K. Y., de Angelis, P., Freeman, M., and Wingate,
L.: Reconciling the optimal and empirical approaches to modelling stomatal
conductance, Glob. Change Biol., 17, 2134–2144,
https://doi.org/10.1111/j.1365-2486.2010.02375.x, 2011.
Meir, P., Kruijt, B., Broadmeadow, M., Barbosa, E., Kull, O., Carswell, F.,
Nobre, A., and Jarvis, P. G.: Acclimation of photosynthetic capacity to
irradiance in tree canopies in relation to leaf nitrogen concentration and
leaf mass per unit area, Plant Cell Environ., 25, 343–357,
https://doi.org/10.1046/j.0016-8025.2001.00811.x, 2002.
Mercado, L. M., Huntingford, C., Gash, J. H. C., Cox, P. M., and Jogireddy,
V. R.: Improving the representation of radiation interception and
photosynthesis for climate model applications, Tellus B, 59, 553–565,
https://doi.org/10.1111/j.1600-0889.2007.00256.x, 2007.
Mercado, L. M., Bellouin, N., Sitch, S., Boucher, O., Huntingford, C., Wild,
M., and Cox, P. M.: Impact of changes in diffuse radiation on the global
land carbon sink, Nature, 458, 1014–1017, https://doi.org/10.1038/nature07949, 2009.
Mercado, L. M., Medlyn, B. E., Huntingford, C., Oliver, R. J., Clark, D. B.,
Sitch, S., Zelazowski, P., Kattge, J., Harper, A. B., and Cox, P. M.: Large
sensitivity in land carbon storage due to geographical and temporal
variation in the thermal response of photosynthetic capacity, New
Phytol., 218, 1462–1477, https://doi.org/10.1111/nph.15100, 2018.
Miller, B. D., Carter, K. R., Reed, S. C., Wood, T. E., and Cavaleri, M. A.:
Only sun-lit leaves of the uppermost canopy exceed both air temperature and
photosynthetic thermal optima in a wet tropical forest, Agr.
Forest Meteorol., 301–302, 108347, https://doi.org/10.1016/j.agrformet.2021.108347, 2021.
Oliver, R. J.: Rose suite u-br064, MetOffice [code], https://code.metoffice.gov.uk/trac/roses-u/browser/b/r/0/6/4/trunk, last access: 14 July 2022.
Oliver, R. J., Mercado, L. M., Sitch, S., Simpson, D., Medlyn, B. E., Lin, Y.-S., and Folberth, G. A.: Large but decreasing effect of ozone on the European carbon sink, Biogeosciences, 15, 4245–4269, https://doi.org/10.5194/bg-15-4245-2018, 2018.
Oliver, R., Mercado, L., Clark, D., Huntingford, C., Taylor, C., Vidale, P. L., McGuire, P., Todt, M., Folwell, S., Shamsudheen, S., and Medlyn, B.: Improved representation of plant physiology in the JULES-vn5.6 land surface model: Photosynthesis, stomatal conductance and thermal acclimation, Zenodo [data set], https://doi.org/10.5281/zenodo.5825540, 2022.
Pan, Y., Birdsey, R. A., Fang, J., Houghton, R., Kauppi, P. E., Kurz, W. A.,
Phillips, O. L., Shvidenko, A., Lewis, S. L., Canadell, J. G., Ciais, P.,
Jackson, R. B., Pacala, S. W., McGuire, A. D., Piao, S., Rautiainen, A.,
Sitch, S., and Hayes, D.: A Large and Persistent Carbon Sink in the World's
Forests, Science, 333, 988–993, https://doi.org/10.1126/science.1201609, 2011.
Pau, S., Detto, M., Kim, Y., and Still, C. J.: Tropical forest temperature
thresholds for gross primary productivity, Ecosphere, 9, e02311,
https://doi.org/10.1002/ecs2.2311, 2018.
Poulter, B., MacBean, N., Hartley, A., Khlystova, I., Arino, O., Betts, R., Bontemps, S., Boettcher, M., Brockmann, C., Defourny, P., Hagemann, S., Herold, M., Kirches, G., Lamarche, C., Lederer, D., Ottlé, C., Peters, M., and Peylin, P.: Plant functional type classification for earth system models: results from the European Space Agency's Land Cover Climate Change Initiative, Geosci. Model Dev., 8, 2315–2328, https://doi.org/10.5194/gmd-8-2315-2015, 2015.
Reich, P. B., Sendall, K. M., Stefanski, A., Rich, R. L., Hobbie, S. E., and
Montgomery, R. A.: Effects of climate warming on photosynthesis in boreal
tree species depend on soil moisture, Nature, 562, 263–267,
https://doi.org/10.1038/s41586-018-0582-4, 2018.
Roberts, M. J., Baker, A., Blockley, E. W., Calvert, D., Coward, A., Hewitt, H. T., Jackson, L. C., Kuhlbrodt, T., Mathiot, P., Roberts, C. D., Schiemann, R., Seddon, J., Vannière, B., and Vidale, P. L.: Description of the resolution hierarchy of the global coupled HadGEM3-GC3.1 model as used in CMIP6 HighResMIP experiments, Geosci. Model Dev., 12, 4999–5028, https://doi.org/10.5194/gmd-12-4999-2019, 2019.
Rogers, A., Medlyn, B. E., Dukes, J. S., Bonan, G., von Caemmerer, S.,
Dietze, M. C., Kattge, J., Leakey, A. D. B., Mercado, L. M., Niinemets,
Ü., Prentice, I. C., Serbin, S. P., Sitch, S., Way, D. A., and Zaehle,
S.: A roadmap for improving the representation of photosynthesis in Earth
system models, New Phytol., 213, 22–42, https://doi.org/10.1111/nph.14283, 2017.
Rogers, A., Kumarathunge, D. P., Lombardozzi, D. L., Medlyn, B. E., Serbin,
S. P., and Walker, A. P.: Triose phosphate utilization limitation: an
unnecessary complexity in terrestrial biosphere model representation of
photosynthesis, New Phytol., 230, 17–22, https://doi.org/10.1111/nph.17092, 2021.
Schlesinger, W. H. and Jasechko, S.: Transpiration in the global water
cycle, Agr. Forest Meteorol., 189–190, 115–117,
https://doi.org/10.1016/j.agrformet.2014.01.011, 2014.
Sellar, A. A., Jones, C. G., Mulcahy, J. P., Tang, Y., Yool, A., Wiltshire,
A., O'Connor, F. M., Stringer, M., Hill, R., Palmieri, J., Woodward, S., de
Mora, L., Kuhlbrodt, T., Rumbold, S. T., Kelley, D. I., Ellis, R., Johnson,
C. E., Walton, J., Abraham, N. L., Andrews, M. B., Andrews, T., Archibald,
A. T., Berthou, S., Burke, E., Blockley, E., Carslaw, K., Dalvi, M.,
Edwards, J., Folberth, G. A., Gedney, N., Griffiths, P. T., Harper, A. B.,
Hendry, M. A., Hewitt, A. J., Johnson, B., Jones, A., Jones, C. D., Keeble,
J., Liddicoat, S., Morgenstern, O., Parker, R. J., Predoi, V., Robertson,
E., Siahaan, A., Smith, R. S., Swaminathan, R., Woodhouse, M. T., Zeng, G.,
and Zerroukat, M.: UKESM1: Description and Evaluation of the U.K. Earth
System Model, J. Adv. Model. Earth Sy., 11, 4513–4558,
https://doi.org/10.1029/2019MS001739, 2019.
Sendall, K. M., Reich, P. B., Zhao, C., Jihua, H., Wei, X., Stefanski, A.,
Rice, K., Rich, R. L., and Montgomery, R. A.: Acclimation of photosynthetic
temperature optima of temperate and boreal tree species in response to
experimental forest warming, Glob. Change Biol., 21, 1342–1357,
https://doi.org/10.1111/gcb.12781, 2015.
Shabanov, N., Huang, D., Yang, W., Tan, B., Knyazikhin, Y., Myneni, R., Ahl,
D., Gower, S., Huete, A., Aragao, L., and Shimabukuro, Y.: Analysis and
Optimization of the MODIS Leaf Area Index Algorithm Retrievals Over
Broadleaf Forests, IEEE T. Geosci. Remote, 43, 1855–1865,
https://doi.org/10.1109/TGRS.2005.852477, 2005.
Slot, M. and Winter, K.: Photosynthetic acclimation to warming in tropical
forest tree seedlings, J. Exp. Bot., 68, 2275–2284,
https://doi.org/10.1093/jxb/erx071, 2017.
Slot, M., Rifai, S. W., and Winter, K.: Photosynthetic plasticity of a
tropical tree species, Tabebuia rosea, in response to elevated temperature
and CO2, Plant Cell Environ., 44, 2347–2364, https://doi.org/10.1111/pce.14049, 2021.
Smith, N. G. and Dukes, J. S.: Plant respiration and photosynthesis in
global-scale models: incorporating acclimation to temperature and CO2,
Glob. Change Biol., 19, 45–63, https://doi.org/10.1111/j.1365-2486.2012.02797.x, 2013.
Smith, N. G., Malyshev, S. L., Shevliakova, E., Kattge, J., and Dukes, J.
S.: Foliar temperature acclimation reduces simulated carbon sensitivity to
climate, Nat. Clim. Change, 6, 407–411, https://doi.org/10.1038/nclimate2878, 2016.
Spafford, L. and MacDougall, A. H.: Validation of terrestrial biogeochemistry in CMIP6 Earth system models: a review, Geosci. Model Dev., 14, 5863–5889, https://doi.org/10.5194/gmd-14-5863-2021, 2021.
Tans, P. and Keeling, R.: NOAA/ESRL, https://www.esrl.noaa.gov/gmd/ccgg/trends/ (last access: December 2021), 2014.
Tramontana, G., Jung, M., Schwalm, C. R., Ichii, K., Camps-Valls, G., Ráduly, B., Reichstein, M., Arain, M. A., Cescatti, A., Kiely, G., Merbold, L., Serrano-Ortiz, P., Sickert, S., Wolf, S., and Papale, D.: Predicting carbon dioxide and energy fluxes across global FLUXNET sites with regression algorithms, Biogeosciences, 13, 4291–4313, https://doi.org/10.5194/bg-13-4291-2016, 2016.
Vårhammar, A., Wallin, G., McLean, C. M., Dusenge, M. E., Medlyn, B. E.,
Hasper, T. B., Nsabimana, D., and Uddling, J.: Photosynthetic temperature
responses of tree species in Rwanda: evidence of pronounced negative effects
of high temperature in montane rainforest climax species, New Phytol.,
206, 1000–1012, https://doi.org/10.1111/nph.13291, 2015.
Verhoef, A. and Egea, G.: Modeling plant transpiration under limited soil
water: Comparison of different plant and soil hydraulic parameterizations
and preliminary implications for their use in land surface models,
Agr. Forest Meteorol., 191, 22–32,
https://doi.org/10.1016/j.agrformet.2014.02.009, 2014.
Vidale, P. L., Egea, G., McGuire, P. C., Todt, M., Peters, W., Müller,
O., Balan-Sarojini, B., and Verhoef, A.: On the Treatment of Soil Water
Stress in GCM Simulations of Vegetation Physiology, Front.
Environ. Sci., 9, 689301, https://doi.org/10.3389/fenvs.2021.689301, 2021.
Walker, A. P., Beckerman, A. P., Gu, L., Kattge, J., Cernusak, L. A.,
Domingues, T. F., Scales, J. C., Wohlfahrt, G., Wullschleger, S. D., and
Woodward, F. I.: The relationship of leaf photosynthetic traits – Vcmax and
Jmax – to leaf nitrogen, leaf phosphorus, and specific leaf area: a
meta-analysis and modeling study, Ecol. Evol., 4, 3218–3235,
https://doi.org/10.1002/ece3.1173, 2014.
Walker, A. P., Johnson, A. L., Rogers, A., Anderson, J., Bridges, R. A.,
Fisher, R. A., Lu, D., Ricciuto, D. M., Serbin, S. P., and Ye, M.:
Multi-hypothesis comparison of Farquhar and Collatz photosynthesis models
reveals the unexpected influence of empirical assumptions at leaf and global
scales, Glob. Change Biol., 27, 804–822, https://doi.org/10.1111/gcb.15366, 2021.
Way, D. A. and Sage, R. F.: Elevated growth temperatures reduce the carbon
gain of black spruce [Picea mariana (Mill.) B.S.P.], Glob. Change Biol.,
14, 624–636, https://doi.org/10.1111/j.1365-2486.2007.01513.x, 2008.
Way, D. A. and Yamori, W.: Thermal acclimation of photosynthesis: on the
importance of adjusting our definitions and accounting for thermal
acclimation of respiration, Photosynth. Res., 119, 89–100,
https://doi.org/10.1007/s11120-013-9873-7, 2014.
Way, D. A., Stinziano, J. R., Berghoff, H., and Oren, R.: How well do
growing season dynamics of photosynthetic capacity correlate with leaf
biochemistry and climate fluctuations?, Tree Physiol., 37, 879–888,
https://doi.org/10.1093/treephys/tpx086, 2017.
Weedon, G. P., Balsamo, G., Bellouin, N., Gomes, S., Best, M. J., and
Viterbo, P.: The WFDEI meteorological forcing data set: WATCH Forcing Data
methodology applied to ERA-Interim reanalysis data, Water Resour.
Res., 50, 7505–7514, https://doi.org/10.1002/2014WR015638, 2014.
Williams, K. D., Copsey, D., Blockley, E. W., Bodas-Salcedo, A., Calvert,
D., Comer, R., Davis, P., Graham, T., Hewitt, H. T., Hill, R., Hyder, P.,
Ineson, S., Johns, T. C., Keen, A. B., Lee, R. W., Megann, A., Milton, S.
F., Rae, J. G. L., Roberts, M. J., Scaife, A. A., Schiemann, R., Storkey,
D., Thorpe, L., Watterson, I. G., Walters, D. N., West, A., Wood, R. A.,
Woollings, T., and Xavier, P. K.: The Met Office Global Coupled Model 3.0
and 3.1 (GC3.0 and GC3.1) Configurations, J. Adv. Model.
Earth Sy., 10, 357–380, https://doi.org/10.1002/2017MS001115, 2018.
Wilson, K. B., Baldocchi, D. D., and Hanson, P. J.: Leaf age affects the
seasonal pattern of photosynthetic capacityand net ecosystem exchange of
carbon in a deciduous forest, Plant Cell Environ., 24, 571–583,
2001.
Wiltshire, A. J., Duran Rojas, M. C., Edwards, J. M., Gedney, N., Harper, A. B., Hartley, A. J., Hendry, M. A., Robertson, E., and Smout-Day, K.: JULES-GL7: the Global Land configuration of the Joint UK Land Environment Simulator version 7.0 and 7.2, Geosci. Model Dev., 13, 483–505, https://doi.org/10.5194/gmd-13-483-2020, 2020.
Wohlfahrt, G., Bahn, M., Haubner, E., Horak, I., Michaeler, W., Rottmar, K.,
Tappeiner, U., and Cernusca, A.: Inter-specific variation of the biochemical
limitation to photosynthesis and related leaf traits of 30 species from
mountain grassland ecosystems under different land use, Plant Cell
Environ., 22, 1281–1296, https://doi.org/10.1046/j.1365-3040.1999.00479.x, 1999.
Xiao, Z., Liang, S., Wang, J., Xiang, Y., Zhao, X., and Song, J.:
Long-Time-Series Global Land Surface Satellite Leaf Area Index Product
Derived From MODIS and AVHRR Surface Reflectance, IEEE T.
Geosci. Remote Sens., 54, 5301–5318, https://doi.org/10.1109/TGRS.2016.2560522,
2016.
Yamaguchi, D. P., Nakaji, T., Hiura, T., and Hikosaka, K.: Effects of
seasonal change and experimental warming on the temperature dependence of
photosynthesis in the canopy leaves of Quercus serrata, Tree Physiol., 36,
1283–1295, https://doi.org/10.1093/treephys/tpw021, 2016.
Yamori, W., Hikosaka, K., and Way, D. A.: Temperature response of
photosynthesis in C3, C4, and CAM plants: temperature acclimation and
temperature adaptation, Photosynth. Res., 119, 101–117,
https://doi.org/10.1007/s11120-013-9874-6, 2014.
Yang, R., Friedl, M. A., and Ni, W.: Parameterization of shortwave radiation
fluxes for nonuniform vegetation canopies in land surface models, J.
Geophys. Res.-Atmos., 106, 14275–14286, 2001.
Zeng, Z., Piao, S., Li, L. Z. X., Zhou, L., Ciais, P., Wang, T., Li, Y.,
Lian, X., Wood, E. F., Friedlingstein, P., Mao, J., Estes, L. D., Myneni,
R. B., Peng, S., Shi, X., Seneviratne, S. I., and Wang, Y.: Climate
mitigation from vegetation biophysical feedbacks during the past three
decades, Nat. Clim. Change, 7, 432–436, https://doi.org/10.1038/nclimate3299, 2017.
Zhang, X. W., Wang, J. R., Ji, M. F., Milne, R. I., Wang, M. H., Liu, J.-Q.,
Shi, S., Yang, S.-L., and Zhao, C.-M.: Higher Thermal Acclimation Potential
of Respiration but Not Photosynthesis in Two Alpine Picea Taxa in Contrast
to Two Lowland Congeners, PLOS ONE, 10, e0123248,
https://doi.org/10.1371/journal.pone.0123248, 2015.
Zhang, Y. and Schaap, M. G.: Weighted recalibration of the Rosetta
pedotransfer model with improved estimates of hydraulic parameter
distributions and summary statistics (Rosetta3), J. Hydrol., 547,
39–53, https://doi.org/10.1016/j.jhydrol.2017.01.004, 2017.
Zhao, M. and Running, S. W.: Drought-Induced Reduction in Global Terrestrial
Net Primary Production from 2000 Through 2009, Science, 329, 940–943,
https://doi.org/10.1126/science.1192666, 2010.
Zhao, M., Heinsch, F. A., Nemani, R. R., and Running, S. W.: Improvements of
the MODIS terrestrial gross and net primary production global data set,
Remote Sens. Environ., 95, 164–176, https://doi.org/10.1016/j.rse.2004.12.011, 2005.
Zhao, M., Running, S. W., and Nemani, R. R.: Sensitivity of Moderate
Resolution Imaging Spectroradiometer (MODIS) terrestrial primary production
to the accuracy of meteorological reanalyses, J. Geophys.
Res.-Biogeo., 111, G01002, https://doi.org/10.1029/2004JG000004, 2006.
Ziehn, T., Kattge, J., Knorr, W., and Scholze, M.: Improving the
predictability of global CO2 assimilation rates under climate change,
Geophys. Res. Lett., 38, L10404, https://doi.org/10.1029/2011GL047182, 2011.
Short summary
We introduce new representations of plant physiological processes into a land surface model. Including new biological understanding improves modelled carbon and water fluxes for the present in tropical and northern-latitude forests. Future climate simulations demonstrate the sensitivity of photosynthesis to temperature is important for modelling carbon cycle dynamics in a warming world. Accurate representation of these processes in models is necessary for robust predictions of climate change.
We introduce new representations of plant physiological processes into a land surface model....
