Articles | Volume 11, issue 3
https://doi.org/10.5194/gmd-11-1181-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-11-1181-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Methods for assessment of models
| 
29 Mar 2018
Methods for assessment of models |
| 29 Mar 2018
Error assessment of biogeochemical models by lower bound methods (NOMMA-1.0)
Volkmar Sauerland
CORRESPONDING AUTHOR
Department of Mathematics, Kiel University,
Christian-Albrechts-Platz 4, 24118 Kiel, Germany
Ulrike Löptien
GEOMAR Helmholtz Centre for Ocean Research Kiel,
Düsternbrooker Weg 20, 24105 Kiel, Germany
Institute of Geosciences, Kiel University, Ludewig-Meyn-Strasse 10, 24118 Kiel, Germany
Claudine Leonhard
Department of Mathematics, Kiel University,
Christian-Albrechts-Platz 4, 24118 Kiel, Germany
Andreas Oschlies
GEOMAR Helmholtz Centre for Ocean Research Kiel,
Düsternbrooker Weg 20, 24105 Kiel, Germany
Anand Srivastav
Department of Mathematics, Kiel University,
Christian-Albrechts-Platz 4, 24118 Kiel, Germany
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Nadine Mengis, David P. Keller, Andrew H. MacDougall, Michael Eby, Nesha Wright, Katrin J. Meissner, Andreas Oschlies, Andreas Schmittner, Alexander J. MacIsaac, H. Damon Matthews, and Kirsten Zickfeld
Geosci. Model Dev., 13, 4183–4204, https://doi.org/10.5194/gmd-13-4183-2020, https://doi.org/10.5194/gmd-13-4183-2020, 2020
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In this paper, we evaluate the newest version of the University of Victoria Earth System Climate Model (UVic ESCM 2.10). Combining recent model developments as a joint effort, this version is to be used in the next phase of model intercomparison and climate change studies. The UVic ESCM 2.10 is capable of reproducing changes in historical temperature and carbon fluxes well. Additionally, the model is able to reproduce the three-dimensional distribution of many ocean tracers.
Sabine Mathesius, Julia Getzlaff, Heiner Dietze, Andreas Oschlies, and Markus Schartau
Earth Syst. Sci. Data, 12, 1775–1787, https://doi.org/10.5194/essd-12-1775-2020, https://doi.org/10.5194/essd-12-1775-2020, 2020
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Controlled manipulation of environmental conditions within large enclosures in the ocean, pelagic mesocosms, has become a standard method to explore responses of marine plankton communities to anthropogenic change. Among the challenges of interpreting mesocosm data is the often uncertain role of vertical mixing. This study introduces a mesocosm mixing model that is able to estimate vertical diffusivities and thus provides a tool for future mesocosm data analyses that account for mixing.
Iris Kriest, Paul Kähler, Wolfgang Koeve, Karin Kvale, Volkmar Sauerland, and Andreas Oschlies
Biogeosciences, 17, 3057–3082, https://doi.org/10.5194/bg-17-3057-2020, https://doi.org/10.5194/bg-17-3057-2020, 2020
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Constants of global biogeochemical ocean models are often tuned
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Ulrike Löptien and Heiner Dietze
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-96, https://doi.org/10.5194/bg-2020-96, 2020
Manuscript not accepted for further review
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Nitrogen fixation, conducted by specific microorganisms, makes molecular nitrogen available for marine biota. By this means this process exerts major control on the growth of algae in the ocean. This study compares two contemporary paradigms, anticipating the ecological niche of N-fixing organisms in an Earth System Model. We illustrate respective uncertainties in climate projections and suggest specific observations to advance the reliable representation of nitrogen fixation in numerical models.
Heiner Dietze, Ulrike Löptien, and Julia Getzlaff
Geosci. Model Dev., 13, 71–97, https://doi.org/10.5194/gmd-13-71-2020, https://doi.org/10.5194/gmd-13-71-2020, 2020
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We present a new near-global coupled biogeochemical ocean-circulation model configuration of the Southern Ocean. The configuration features both a relatively equilibrated oceanic carbon inventory and an explicit representation of mesoscale eddies. In this paper, we document the model configuration and showcase its potential to tackle research questions such as the Southern Ocean carbon uptake dynamics on decadal timescales.
Fabian Reith, Wolfgang Koeve, David P. Keller, Julia Getzlaff, and Andreas Oschlies
Earth Syst. Dynam., 10, 711–727, https://doi.org/10.5194/esd-10-711-2019, https://doi.org/10.5194/esd-10-711-2019, 2019
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Tronje P. Kemena, Angela Landolfi, Andreas Oschlies, Klaus Wallmann, and Andrew W. Dale
Earth Syst. Dynam., 10, 539–553, https://doi.org/10.5194/esd-10-539-2019, https://doi.org/10.5194/esd-10-539-2019, 2019
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Oceanic deoxygenation is driven by climate change in several areas of the global ocean. Measurements indicate that ocean volumes with very low oxygen levels expand, with consequences for marine organisms and fishery. We found climate-change-driven phosphorus (P) input in the ocean is hereby an important driver for deoxygenation on longer timescales with effects in the next millennia.
Daniela Niemeyer, Iris Kriest, and Andreas Oschlies
Biogeosciences, 16, 3095–3111, https://doi.org/10.5194/bg-16-3095-2019, https://doi.org/10.5194/bg-16-3095-2019, 2019
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Ulrike Löptien and Heiner Dietze
Biogeosciences, 16, 1865–1881, https://doi.org/10.5194/bg-16-1865-2019, https://doi.org/10.5194/bg-16-1865-2019, 2019
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Yonss Saranga José, Lothar Stramma, Sunke Schmidtko, and Andreas Oschlies
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-155, https://doi.org/10.5194/bg-2019-155, 2019
Revised manuscript accepted for BG
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Robinson Hordoir, Lars Axell, Anders Höglund, Christian Dieterich, Filippa Fransner, Matthias Gröger, Ye Liu, Per Pemberton, Semjon Schimanke, Helen Andersson, Patrik Ljungemyr, Petter Nygren, Saeed Falahat, Adam Nord, Anette Jönsson, Iréne Lake, Kristofer Döös, Magnus Hieronymus, Heiner Dietze, Ulrike Löptien, Ivan Kuznetsov, Antti Westerlund, Laura Tuomi, and Jari Haapala
Geosci. Model Dev., 12, 363–386, https://doi.org/10.5194/gmd-12-363-2019, https://doi.org/10.5194/gmd-12-363-2019, 2019
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Nemo-Nordic is a regional ocean model based on a community code (NEMO). It covers the Baltic and the North Sea area and is used as a forecast model by the Swedish Meteorological and Hydrological Institute. It is also used as a research tool by scientists of several countries to study, for example, the effects of climate change on the Baltic and North seas. Using such a model permits us to understand key processes in this coastal ecosystem and how such processes will change in a future climate.
Olaf Duteil, Andreas Oschlies, and Claus W. Böning
Biogeosciences, 15, 7111–7126, https://doi.org/10.5194/bg-15-7111-2018, https://doi.org/10.5194/bg-15-7111-2018, 2018
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Oxygen-depleted regions of the Pacific Ocean are currently expanding, which is threatening marine habitats. Based on numerical simulations, we show that the decrease in the intensity of the trade winds and the subsequent slowdown of the oceanic currents lead to a reduction in oxygen supply. Our study suggests that the prevailing positive conditions of the Pacific Decadal Oscillation since 1975, a major source of natural variability, may explain a significant part of the current deoxygenation.
Marine Bretagnon, Aurélien Paulmier, Véronique Garçon, Boris Dewitte, Séréna Illig, Nathalie Leblond, Laurent Coppola, Fernando Campos, Federico Velazco, Christos Panagiotopoulos, Andreas Oschlies, J. Martin Hernandez-Ayon, Helmut Maske, Oscar Vergara, Ivonne Montes, Philippe Martinez, Edgardo Carrasco, Jacques Grelet, Olivier Desprez-De-Gesincourt, Christophe Maes, and Lionel Scouarnec
Biogeosciences, 15, 5093–5111, https://doi.org/10.5194/bg-15-5093-2018, https://doi.org/10.5194/bg-15-5093-2018, 2018
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In oxygen minimum zone, the fate of the organic matter is a key question as the low oxygen condition would preserve the OM and thus enhance the biological carbon pump while the high microbial activity would foster the remineralisation and the greenhouse gases emission. To investigate this paradigm, sediment traps were deployed off Peru. We pointed out the influence of the oxygenation as well as the organic matter quantity and quality on the carbon transfer efficiency in the oxygen minimum zone.
Nadine Mengis, David P. Keller, and Andreas Oschlies
Earth Syst. Dynam., 9, 15–31, https://doi.org/10.5194/esd-9-15-2018, https://doi.org/10.5194/esd-9-15-2018, 2018
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The Systematic Correlation Matrix Evaluation (SCoMaE) method applies statistical information to systematically select, transparent, nonredundant indicators for a comprehensive assessment of the Earth system state. We show that due to changing climate forcing, such as anthropogenic climate change, the ad hoc assessment indicators might need to be reevaluated. Within an iterative process, this method would allow us to select scientifically consistent and societally relevant assessment indicators.
Per Pemberton, Ulrike Löptien, Robinson Hordoir, Anders Höglund, Semjon Schimanke, Lars Axell, and Jari Haapala
Geosci. Model Dev., 10, 3105–3123, https://doi.org/10.5194/gmd-10-3105-2017, https://doi.org/10.5194/gmd-10-3105-2017, 2017
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The Baltic Sea is seasonally ice covered with intense wintertime ship traffic and a sensitive ecosystem. Understanding the sea-ice pack is important for climate effect studies and forecasting. A NEMO-LIM3.6-based model setup for the North Sea/Baltic Sea is introduced, including a method for ice in the coastal zone. We evaluate different sea-ice parameters and overall find that the model agrees well with the observation though deformed ice is more challenging to capture.
Karin F. Kvale, Samar Khatiwala, Heiner Dietze, Iris Kriest, and Andreas Oschlies
Geosci. Model Dev., 10, 2425–2445, https://doi.org/10.5194/gmd-10-2425-2017, https://doi.org/10.5194/gmd-10-2425-2017, 2017
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Computer models of ocean biology and chemistry are becoming increasingly complex, and thus more expensive, to run. One solution is to approximate the behaviour of the ocean physics and store that information outside of the model. That
offlineinformation can then be used to calculate a steady-state solution from the model's biology and chemistry, without waiting for a traditional
onlineintegration to complete. We show this offline method reproduces online results and is 100 times faster.
James C. Orr, Raymond G. Najjar, Olivier Aumont, Laurent Bopp, John L. Bullister, Gokhan Danabasoglu, Scott C. Doney, John P. Dunne, Jean-Claude Dutay, Heather Graven, Stephen M. Griffies, Jasmin G. John, Fortunat Joos, Ingeborg Levin, Keith Lindsay, Richard J. Matear, Galen A. McKinley, Anne Mouchet, Andreas Oschlies, Anastasia Romanou, Reiner Schlitzer, Alessandro Tagliabue, Toste Tanhua, and Andrew Yool
Geosci. Model Dev., 10, 2169–2199, https://doi.org/10.5194/gmd-10-2169-2017, https://doi.org/10.5194/gmd-10-2169-2017, 2017
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The Ocean Model Intercomparison Project (OMIP) is a model comparison effort under Phase 6 of the Coupled Model Intercomparison Project (CMIP6). Its physical component is described elsewhere in this special issue. Here we describe its ocean biogeochemical component (OMIP-BGC), detailing simulation protocols and analysis diagnostics. Simulations focus on ocean carbon, other biogeochemical tracers, air-sea exchange of CO2 and related gases, and chemical tracers used to evaluate modeled circulation.
Daniela Niemeyer, Tronje P. Kemena, Katrin J. Meissner, and Andreas Oschlies
Earth Syst. Dynam., 8, 357–367, https://doi.org/10.5194/esd-8-357-2017, https://doi.org/10.5194/esd-8-357-2017, 2017
Markus Schartau, Philip Wallhead, John Hemmings, Ulrike Löptien, Iris Kriest, Shubham Krishna, Ben A. Ward, Thomas Slawig, and Andreas Oschlies
Biogeosciences, 14, 1647–1701, https://doi.org/10.5194/bg-14-1647-2017, https://doi.org/10.5194/bg-14-1647-2017, 2017
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Plankton models have become an integral part in marine ecosystem and biogeochemical research. These models differ in complexity and in their number of parameters. How values are assigned to parameters is essential. An overview of major methodologies of parameter estimation is provided. Aspects of parameter identification in the literature are diverse. Individual findings could be better synthesized if notation and expertise of the different scientific communities would be reasonably merged.
Heiner Dietze, Julia Getzlaff, and Ulrike Löptien
Biogeosciences, 14, 1561–1576, https://doi.org/10.5194/bg-14-1561-2017, https://doi.org/10.5194/bg-14-1561-2017, 2017
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The Southern Ocean is a sink for anthropogenic carbon. Projections of how this sink will evolve in an ever-warming climate are based on coupled ocean-circulation–biogeochemical models. This study compares uncertainties of simulated oceanic carbon uptake associated to physical (eddy) parameterizations with those associated wtih (unconstrained) supply of bioavailable iron supply to the surface ocean.
Yonss Saranga José, Heiner Dietze, and Andreas Oschlies
Biogeosciences, 14, 1349–1364, https://doi.org/10.5194/bg-14-1349-2017, https://doi.org/10.5194/bg-14-1349-2017, 2017
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This study aims to investigate the diverse subsurface nutrient patterns observed within anticyclonic eddies in the upwelling system off Peru. Two simulated anticyclonic eddies with opposing subsurface nitrate concentrations were analysed. The results show that diverse nutrient patterns within anticyclonic eddies are related to the presence of water mass from different origins at different depths, responding to variations in depth of the circulation strength at the edge of the eddy.
Iris Kriest, Volkmar Sauerland, Samar Khatiwala, Anand Srivastav, and Andreas Oschlies
Geosci. Model Dev., 10, 127–154, https://doi.org/10.5194/gmd-10-127-2017, https://doi.org/10.5194/gmd-10-127-2017, 2017
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Global biogeochemical ocean models are subject to a high level of parametric uncertainty. This may be of consequence for their skill with respect to accurately describing features of the present ocean and their sensitivity to possible environmental changes. We present the first results from a framework that combines an offline biogeochemical tracer transport model with an estimation of distribution algorithm, calibrating six biogeochemical model parameters against observed oxygen and nutrients.
Fabian Reith, David P. Keller, and Andreas Oschlies
Earth Syst. Dynam., 7, 797–812, https://doi.org/10.5194/esd-7-797-2016, https://doi.org/10.5194/esd-7-797-2016, 2016
Bei Su, Markus Pahlow, and Andreas Oschlies
Biogeosciences, 13, 4985–5001, https://doi.org/10.5194/bg-13-4985-2016, https://doi.org/10.5194/bg-13-4985-2016, 2016
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Previously identified positive feedbacks within the nitrogen cycle in the eastern tropical South Pacific (ETSP) have challenged our understanding of the observed dynamics and stability of the nitrogen inventory. We present a box model analysis of the biological and biogeochemical relations in the ETSP among nitrogen deposition, benthic denitrification and phosphate regeneration. Our results suggest dominant stabilizing feedbacks tending to keep a balanced nitrogen inventory in the ETSP.
Heiner Dietze and Ulrike Löptien
Ocean Sci., 12, 977–986, https://doi.org/10.5194/os-12-977-2016, https://doi.org/10.5194/os-12-977-2016, 2016
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Winds blowing over the ocean drive ocean currents. The oceanic response to winds is, in turn, influenced by ocean currents. Theoretical considerations suggest that the latter effect is especially pronounced in the Baltic Sea. The study presented here puts theses theoretical considerations in a high-resolution ocean circulation model of the Baltic Sea to the test.
I. Kriest and A. Oschlies
Geosci. Model Dev., 8, 2929–2957, https://doi.org/10.5194/gmd-8-2929-2015, https://doi.org/10.5194/gmd-8-2929-2015, 2015
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We use a global model of oceanic P, N, and O2 cycles to investigate consequences of uncertainties in description of organic matter sinking, remineralization, denitrification, and N2-Fixation. After all biogeochemical and physical processes have been spun-up into a dynamically consistent steady-state, particle sinking and oxidant affinities of aerobic and anaerobic remineralization determine the extent of oxygen minimum zones, global nitrogen fluxes, and the oceanic nitrogen inventory.
U. Löptien and H. Dietze
Ocean Sci., 11, 573–590, https://doi.org/10.5194/os-11-573-2015, https://doi.org/10.5194/os-11-573-2015, 2015
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Marine biogeochemical ocean models are embedded into earth system models - which are, to an increasing degree, applied to project the fate of our warming world. These biogeochemical models generally depend on poorly constrained model parameters. In this study we investigate the the demands on observations for an objective estimation of such parameters. A major result is that even modest noise (10%) inherent to observations can hinder the assignment of reasonable parameters.
W. Koeve, H. Wagner, P. Kähler, and A. Oschlies
Geosci. Model Dev., 8, 2079–2094, https://doi.org/10.5194/gmd-8-2079-2015, https://doi.org/10.5194/gmd-8-2079-2015, 2015
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The natural abundance of 14C in CO2 dissolved in seawater is often used to evaluate circulation and age in the ocean and in ocean models. We study limitations of using natural 14C to determine the time elapsed since water had contact with the atmosphere. We find that, globally, bulk 14C age is dominated by two equally important components, (1) the time component of circulation and (2) the “preformed 14C-age”. Considering preformed 14C-age is critical for an assessment of circulation in models.
L. Nickelsen, D. P. Keller, and A. Oschlies
Geosci. Model Dev., 8, 1357–1381, https://doi.org/10.5194/gmd-8-1357-2015, https://doi.org/10.5194/gmd-8-1357-2015, 2015
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In this paper we find that including the marine cycle of the phytoplankton nutrient iron in a global climate model improves the agreement between observed and simulated nutrient concentrations in the ocean and that a better description of the source of iron from the sediment to the ocean is more important than that of iron-containing dust deposition. Finally, we find that the response of the iron cycle to climate warming affects the phytoplankton growth and nutrient cycles.
B. Su, M. Pahlow, H. Wagner, and A. Oschlies
Biogeosciences, 12, 1113–1130, https://doi.org/10.5194/bg-12-1113-2015, https://doi.org/10.5194/bg-12-1113-2015, 2015
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A box model of the eastern tropical South Pacific oxygen minimum zone suggests that anaerobic water-column remineralization rates have to be slower than aerobic remineralization in order to explain the relatively high values of observed nitrate concentrations. Lateral oxygen supply sufficient to oxidize about one-fifth of the export production is required to prevent an anoxic deep ocean. Under these circumstances, the region can be a net source of fixed nitrogen to the surrounding ocean.
U. Löptien and L. Axell
The Cryosphere, 8, 2409–2418, https://doi.org/10.5194/tc-8-2409-2014, https://doi.org/10.5194/tc-8-2409-2014, 2014
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The Baltic Sea is a seasonally ice-covered marginal sea in central northern Europe. In wintertime, on-time shipping depends crucially on sea ice forecasts. Among the forecasting tools heavily applied are numerical models, which suffer from a lack of calibration data because relevant ice properties are difficult (and costly) to monitor. We developed an innovative and inexpensive approach, by using ship speed observations obtained by the automatic identification system (AIS) to asses such models.
U. Löptien and H. Dietze
Earth Syst. Sci. Data, 6, 367–374, https://doi.org/10.5194/essd-6-367-2014, https://doi.org/10.5194/essd-6-367-2014, 2014
W. Koeve, O. Duteil, A. Oschlies, P. Kähler, and J. Segschneider
Geosci. Model Dev., 7, 2393–2408, https://doi.org/10.5194/gmd-7-2393-2014, https://doi.org/10.5194/gmd-7-2393-2014, 2014
H. Dietze, U. Löptien, and K. Getzlaff
Geosci. Model Dev., 7, 1713–1731, https://doi.org/10.5194/gmd-7-1713-2014, https://doi.org/10.5194/gmd-7-1713-2014, 2014
A. E. F. Prowe, M. Pahlow, S. Dutkiewicz, and A. Oschlies
Biogeosciences, 11, 3397–3407, https://doi.org/10.5194/bg-11-3397-2014, https://doi.org/10.5194/bg-11-3397-2014, 2014
I. Kriest and A. Oschlies
Biogeosciences, 10, 8401–8422, https://doi.org/10.5194/bg-10-8401-2013, https://doi.org/10.5194/bg-10-8401-2013, 2013
O. Duteil, W. Koeve, A. Oschlies, D. Bianchi, E. Galbraith, I. Kriest, and R. Matear
Biogeosciences, 10, 7723–7738, https://doi.org/10.5194/bg-10-7723-2013, https://doi.org/10.5194/bg-10-7723-2013, 2013
C. J. Somes, A. Oschlies, and A. Schmittner
Biogeosciences, 10, 5889–5910, https://doi.org/10.5194/bg-10-5889-2013, https://doi.org/10.5194/bg-10-5889-2013, 2013
V. Cocco, F. Joos, M. Steinacher, T. L. Frölicher, L. Bopp, J. Dunne, M. Gehlen, C. Heinze, J. Orr, A. Oschlies, B. Schneider, J. Segschneider, and J. Tjiputra
Biogeosciences, 10, 1849–1868, https://doi.org/10.5194/bg-10-1849-2013, https://doi.org/10.5194/bg-10-1849-2013, 2013
A. Landolfi, H. Dietze, W. Koeve, and A. Oschlies
Biogeosciences, 10, 1351–1363, https://doi.org/10.5194/bg-10-1351-2013, https://doi.org/10.5194/bg-10-1351-2013, 2013
M. El Jarbi, J. Rückelt, T. Slawig, and A. Oschlies
Biogeosciences, 10, 1169–1182, https://doi.org/10.5194/bg-10-1169-2013, https://doi.org/10.5194/bg-10-1169-2013, 2013
L. M. Zamora, A. Oschlies, H. W. Bange, K. B. Huebert, J. D. Craig, A. Kock, and C. R. Löscher
Biogeosciences, 9, 5007–5022, https://doi.org/10.5194/bg-9-5007-2012, https://doi.org/10.5194/bg-9-5007-2012, 2012
Related subject area
Biogeosciences
Alquimia v1.0: a generic interface to biogeochemical codes – a tool for interoperable development, prototyping and benchmarking for multiphysics simulators
Soil nitrous oxide emissions from global land ecosystems and their drivers within the LPJ-GUESS model (v4.1)
Parameterization toolbox for a physical–biogeochemical model compatible with FABM – a case study: the coupled 1D GOTM–ECOSMO E2E for the Sylt–Rømø Bight, North Sea
H2MV (v1.0): global physically constrained deep learning water cycle model with vegetation
NN-TOC v1: global prediction of total organic carbon in marine sediments using deep neural networks
China Wildfire Emission Dataset (ChinaWED v1) for the period 2012–2022
Process-based modeling of solar-induced chlorophyll fluorescence with VISIT-SIF version 1.0
Including the phosphorus cycle into the LPJ-GUESS dynamic global vegetation model (v4.1, r10994) – global patterns and temporal trends of N and P primary production limitation
A comprehensive land-surface vegetation model for multi-stream data assimilation, D&B v1.0
Sources of uncertainty in the SPITFIRE global fire model: development of LPJmL-SPITFIRE1.9 and directions for future improvements
The unicellular NUM v.0.91: a trait-based plankton model evaluated in two contrasting biogeographic provinces
FESOM2.1-REcoM3-MEDUSA2: an ocean–sea ice–biogeochemistry model coupled to a sediment model
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
Emulating grid-based forest carbon dynamics using machine learning: an LPJ-GUESS v4.1.1 application
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
pyVPRM: A next-generation Vegetation Photosynthesis and Respiration Model for the post-MODIS era
Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating the drought response of European tree species with the dynamic vegetation model LPJ-GUESS (v4.1, 97c552c5)
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
Development and assessment of the physical-biogeochemical ocean regional model in the Northwest Pacific: NPRT v1.0 (ROMS v3.9–TOPAZ v2.0)
TROLL 4.0: representing water and carbon fluxes, leaf phenology and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 1: Model description
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
TROLL 4.0: representing water and carbon fluxes, leaf phenology, and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 2: Model evaluation for two Amazonian sites
Estimation of above- and below-ground ecosystem parameters for the DVM-DOS-TEM v0.7.0 model using MADS v1.7.3: a synthetic case study
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
ML4Fire-XGBv1.0: Improving North American wildfire prediction by integrating a machine-learning fire model in a land surface model
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Sergi Molins, Benjamin J. Andre, Jeffrey N. Johnson, Glenn E. Hammond, Benjamin N. Sulman, Konstantin Lipnikov, Marcus S. Day, James J. Beisman, Daniil Svyatsky, Hang Deng, Peter C. Lichtner, Carl I. Steefel, and J. David Moulton
Geosci. Model Dev., 18, 3241–3263, https://doi.org/10.5194/gmd-18-3241-2025, https://doi.org/10.5194/gmd-18-3241-2025, 2025
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Developing scientific software and making sure it functions properly requires a significant effort. As we advance our understanding of natural systems, however, there is the need to develop yet more complex models and codes. In this work, we present a piece of software that facilitates this work, specifically with regard to reactive processes. Existing tried-and-true codes are made available via this new interface, freeing up resources to focus on the new aspects of the problems at hand.
Jianyong Ma, Almut Arneth, Benjamin Smith, Peter Anthoni, Xu-Ri, Peter Eliasson, David Wårlind, Martin Wittenbrink, and Stefan Olin
Geosci. Model Dev., 18, 3131–3155, https://doi.org/10.5194/gmd-18-3131-2025, https://doi.org/10.5194/gmd-18-3131-2025, 2025
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Nitrous oxide (N2O) is a powerful greenhouse gas mainly released from natural and agricultural soils. This study examines how global soil N2O emissions changed from 1961 to 2020 and identifies key factors driving these changes using an ecological model. The findings highlight croplands as the largest source, with factors like fertilizer use and climate change enhancing emissions. Rising CO2 levels, however, can partially mitigate N2O emissions through increased plant nitrogen uptake.
Hoa Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
Geosci. Model Dev., 18, 2961–2982, https://doi.org/10.5194/gmd-18-2961-2025, https://doi.org/10.5194/gmd-18-2961-2025, 2025
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Parameterization is key in modeling to reproduce observations well but is often done manually. This study presents a particle-swarm-optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, providing different insights into ecosystem dynamics, and (2) optimized model complexity.
Zavud Baghirov, Martin Jung, Markus Reichstein, Marco Körner, and Basil Kraft
Geosci. Model Dev., 18, 2921–2943, https://doi.org/10.5194/gmd-18-2921-2025, https://doi.org/10.5194/gmd-18-2921-2025, 2025
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We use an innovative approach to studying the Earth's water cycle by integrating advanced machine learning techniques with a traditional water cycle model. Our model is designed to learn from observational data, with a particular emphasis on understanding the influence of vegetation on water movement. By closely aligning with real-world observations, our model offers new possibilities for enhancing our understanding of the water cycle and its interactions with vegetation.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
Geosci. Model Dev., 18, 2521–2544, https://doi.org/10.5194/gmd-18-2521-2025, https://doi.org/10.5194/gmd-18-2521-2025, 2025
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Our research uses deep learning to predict organic carbon stocks in ocean sediments, which is crucial for understanding their role in the global carbon cycle. By analysing over 22 000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate that the top 10 cm of ocean sediments hold about 156 Pg of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev., 18, 2509–2520, https://doi.org/10.5194/gmd-18-2509-2025, https://doi.org/10.5194/gmd-18-2509-2025, 2025
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The China Wildfire Emission Dataset (ChinaWED v1) estimated wildfire emissions in China during 2012–2022 as 78.13 Tg CO2, 279.47 Gg CH4, and 6.26 Gg N2O annually. Agricultural fires dominated emissions, while forest and grassland emissions decreased. Seasonal peaks occurred in late spring, with hotspots in northeast, southwest, and east China. The model emphasizes the importance of using localized emission factors and high-resolution fire estimates for accurate assessments.
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
Geosci. Model Dev., 18, 2329–2347, https://doi.org/10.5194/gmd-18-2329-2025, https://doi.org/10.5194/gmd-18-2329-2025, 2025
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Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical model developed based on the Vegetation Integrative Simulator for Trace gases (VISIT) to represent satellite-observed SIF. Our simulations reproduced the global distribution and seasonal variations in observed SIF. VISIT-SIF helps to improve photosynthetic processes through a combination of biogeochemical modeling and observed SIF.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
Geosci. Model Dev., 18, 2249–2274, https://doi.org/10.5194/gmd-18-2249-2025, https://doi.org/10.5194/gmd-18-2249-2025, 2025
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Our study maps global nitrogen (N) and phosphorus (P) availability and how they changed from 1901 to 2018. We find that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation increased, especially in the tropics, while N limitation decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, T. Luke Smallman, Susan C. Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zaehle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek S. El-Madany, Mirco Migliavacca, Marika Honkanen, Yann H. Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaétan Pique, Amanda Ojasalo, Shaun Quegan, Peter J. Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
Geosci. Model Dev., 18, 2137–2159, https://doi.org/10.5194/gmd-18-2137-2025, https://doi.org/10.5194/gmd-18-2137-2025, 2025
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When it comes to climate change, the land surface is where the vast majority of impacts happen. The task of monitoring those impacts across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us capture the changes that happen on our lands.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
Geosci. Model Dev., 18, 2021–2050, https://doi.org/10.5194/gmd-18-2021-2025, https://doi.org/10.5194/gmd-18-2021-2025, 2025
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Under climate change, the conditions necessary for wildfires to form are occurring more frequently in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a basis for future improvements.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev., 18, 1895–1916, https://doi.org/10.5194/gmd-18-1895-2025, https://doi.org/10.5194/gmd-18-1895-2025, 2025
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We describe and test the size-based Nutrient-Unicellular-Multicellular model, which defines unicellular plankton using a single set of parameters, on a eutrophic and oligotrophic ecosystem. The results demonstrate that both sites can be modeled with similar parameters and robust performance over a wide range of parameters. The study shows that the model is useful for non-experts and applicable for modeling ecosystems with limited data. It holds promise for evolutionary and deep-time climate models.
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev., 18, 977–1000, https://doi.org/10.5194/gmd-18-977-2025, https://doi.org/10.5194/gmd-18-977-2025, 2025
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Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change, the carbon storage in sediments slows down carbon cycling and influences feedbacks in the atmosphere–ocean–sediment system. This paper describes the coupling of a sediment model to an ocean biogeochemistry model and presents results under the pre-industrial climate and under CO2 perturbation.
Juliette Bernard, Elodie Salmon, Marielle Saunois, Shushi Peng, Penélope Serrano-Ortiz, Antoine Berchet, Palingamoorthy Gnanamoorthy, Joachim Jansen, and Philippe Ciais
Geosci. Model Dev., 18, 863–883, https://doi.org/10.5194/gmd-18-863-2025, https://doi.org/10.5194/gmd-18-863-2025, 2025
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Despite their importance, uncertainties remain in the evaluation of the drivers of temporal variability of methane emissions from wetlands on a global scale. Here, a simplified global model is developed, taking advantage of advances in remote-sensing data and in situ observations. The model reproduces the large spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights into sensitivity analyses.
Carolina Natel, David Martin Belda, Peter Anthoni, Neele Haß, Sam Rabin, and Almut Arneth
EGUsphere, https://doi.org/10.5194/egusphere-2024-4064, https://doi.org/10.5194/egusphere-2024-4064, 2025
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Complex models predict forest carbon responses to future climate change but are slow and computationally intensive, limiting large-scale analyses. We used machine learning to accelerate predictions from the LPJ-GUESS vegetation model. Our emulators, based on random forests and neural networks, achieved 97 % faster simulations. This approach enables rapid exploration of climate mitigation strategies and supports informed policy decisions.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie A. Fisher, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 18, 287–317, https://doi.org/10.5194/gmd-18-287-2025, https://doi.org/10.5194/gmd-18-287-2025, 2025
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Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Theo Glauch, Julia Marshall, Christoph Gerbig, Santiago Botía, Michał Gałkowski, Sanam N. Vardag, and André Butz
EGUsphere, https://doi.org/10.5194/egusphere-2024-3692, https://doi.org/10.5194/egusphere-2024-3692, 2025
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The Vegetation Photosynthesis and Respiration Model (VPRM) estimates carbon exchange between the atmosphere and biosphere by modeling gross primary production and respiration using satellite data and weather variables. Our new version, pyVPRM, supports diverse satellite products like Sentinel-2, MODIS, VIIRS and new land cover maps, enabling high spatial and temporal resolution. This improves flux estimates, especially in complex landscapes, and ensures continuity as MODIS nears decommissioning.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
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The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
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In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
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The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Benjamin Franklin Meyer, João Paulo Darela-Filho, Konstantin Gregor, Allan Buras, Qiao-Lin Gu, Andreas Krause, Daijun Liu, Phillip Papastefanou, Sijeh Asuk, Thorsten E. E. Grams, Christian S. Zang, and Anja Rammig
EGUsphere, https://doi.org/10.5194/egusphere-2024-3352, https://doi.org/10.5194/egusphere-2024-3352, 2024
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Climate change has increased the likelihood of drought events across Europe, potentially threatening European forest carbon sink. Dynamic vegetation models with mechanistic plant hydraulic architecture are needed to model these developments. We evaluate the plant hydraulic architecture version of LPJ-GUESS and show it's capability at capturing species-specific evapotranspiration responses to drought and reproducing flux observations of both gross primary production and evapotranspiration.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Daehyuk Kim, Hyun-Chae Jung, Jae-Hong Moon, and Na-Hyeon Lee
EGUsphere, https://doi.org/10.5194/egusphere-2024-1509, https://doi.org/10.5194/egusphere-2024-1509, 2024
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Physical–biogeochemical ocean global models is difficult to analyze oceanic environmental systems. To accurately understand the physical–biogeochemical processes at the regional scale, physical and biogeochemical models were coupled at a high resolution. The results successfully simulated the seasonal variations of chlorophyll and nutrients, particularly in the marginal seas, which were not captured by global models. The model is an important tool for studying physical–biogeochemical processes.
Isabelle Maréchaux, Fabian Jörg Fischer, Sylvain Schmitt, and Jérôme Chave
EGUsphere, https://doi.org/10.5194/egusphere-2024-3104, https://doi.org/10.5194/egusphere-2024-3104, 2024
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We describe TROLL 4.0, a simulator of forest dynamics that represents trees in a virtual space at one-meter resolution. Tree birth, growth, death and the underlying physiological processes such as carbon assimilation, water transpiration and leaf phenology depend on plant traits that are measured in the field for many individuals and species. The model is thus capable of jointly simulating forest structure, diversity and ecosystem functioning, a major challenge in modelling vegetation dynamics.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Sylvain Schmitt, Fabian Fischer, James Ball, Nicolas Barbier, Marion Boisseaux, Damien Bonal, Benoit Burban, Xiuzhi Chen, Géraldine Derroire, Jeremy Lichstein, Daniela Nemetschek, Natalia Restrepo-Coupe, Scott Saleska, Giacomo Sellan, Philippe Verley, Grégoire Vincent, Camille Ziegler, Jérôme Chave, and Isabelle Maréchaux
EGUsphere, https://doi.org/10.5194/egusphere-2024-3106, https://doi.org/10.5194/egusphere-2024-3106, 2024
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We evaluate the capability of TROLL 4.0, a simulator of forest dynamics, to represent tropical forest structure, diversity and functioning in two Amazonian forests. Evaluation data include forest inventories, carbon and water fluxes between the forest and the atmosphere, and leaf area and canopy height from remote-sensing products. The model realistically predicts the structure and composition, and the seasonality of carbon and water fluxes at both sites.
Elchin E. Jafarov, Helene Genet, Velimir V. Vesselinov, Valeria Briones, Aiza Kabeer, Andrew L. Mullen, Benjamin Maglio, Tobey Carman, Ruth Rutter, Joy Clein, Chu-Chun Chang, Dogukan Teber, Trevor Smith, Joshua M. Rady, Christina Schädel, Jennifer D. Watts, Brendan M. Rogers, and Susan M. Natali
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-158, https://doi.org/10.5194/gmd-2024-158, 2024
Revised manuscript accepted for GMD
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Thawing permafrost could greatly impact global climate. Our study improves modeling of carbon cycling in Arctic ecosystems. We developed an automated method to fine-tune a model that simulates carbon and nitrogen flows, using computer-generated data. Using computer-generated data, we tested our method and found it enhances accuracy and reduces the time needed for calibration. This work helps make climate predictions more reliable in sensitive permafrost regions.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Ye Liu, Huilin Huang, Sing-Chun Wang, Tao Zhang, Donghui Xu, and Yang Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-151, https://doi.org/10.5194/gmd-2024-151, 2024
Revised manuscript accepted for GMD
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This study integrates machine learning with a land surface model to improve wildfire predictions in North America. Traditional models struggle with accurately simulating burned areas due to simplified processes. By combining the predictive power of machine learning with a land model, our hybrid framework better captures fire dynamics. This approach enhances our understanding of wildfire behavior and aids in developing more effective climate and fire management strategies.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
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Short summary
We present a concept to prove that a parametric model is well calibrated, i.e., that changes of its free parameters cannot lead to a much better model–data misfit anymore. The intention is motivated by the fact that calibrating global biogeochemical ocean models is important for assessment and inter-model comparison but computationally expensive.
We present a concept to prove that a parametric model is well calibrated, i.e., that changes of...
