Articles | Volume 17, issue 4
https://doi.org/10.5194/gmd-17-1729-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-17-1729-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
27 Feb 2024
Model description paper |
| 27 Feb 2024
| 27 Feb 2024
A diatom extension to the cGEnIE Earth system model – EcoGEnIE 1.1
Aaron A. Naidoo-Bagwell
CORRESPONDING AUTHOR
Department of Geology, Lund University, Lund, Sweden
School of Geographical Sciences, BRIDGE, University of Bristol, Bristol, UK
Fanny M. Monteiro
CORRESPONDING AUTHOR
School of Geographical Sciences, BRIDGE, University of Bristol, Bristol, UK
Katharine R. Hendry
School of Earth Sciences, University of Bristol, Bristol, UK
Polar Oceans Team, British Antarctic Survey, Cambridge, UK
Scott Burgan
Met Office, Exeter, UK
Jamie D. Wilson
School of Earth Sciences, University of Bristol, Bristol, UK
Department of Earth, Ocean and Ecological Sciences, University of Liverpool, Liverpool, UK
Ben A. Ward
School of Ocean and Earth Science, University of Southampton, Waterfront Campus, Southampton, UK
Andy Ridgwell
Department of Earth and Planetary Sciences, University of California, Riverside, California, USA
Daniel J. Conley
Department of Geology, Lund University, Lund, Sweden
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Keyi Cheng, Andy Ridgwell, and Dalton S. Hardisty
Biogeosciences, 21, 4927–4949, https://doi.org/10.5194/bg-21-4927-2024, https://doi.org/10.5194/bg-21-4927-2024, 2024
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The carbonate paleoredox proxy, I / Ca, has shown its potential to quantify the redox change in the past ocean, which is of broad importance for understanding climate change and evolution. Here, we tuned and optimized the marine iodine cycling embedded in an Earth system model, “cGENIE”, against modern ocean observations and then tested its ability to estimate I / Ca in the Cretaceous ocean. Our study implies cGENIE’s potential to quantify redox change in the past using the I / Ca proxy.
Isabell Hochfeld, Ben A. Ward, Anke Kremp, Juliane Romahn, Alexandra Schmidt, Miklós Bálint, Lutz Becks, Jérôme Kaiser, Helge W. Arz, Sarah Bolius, Laura S. Epp, Markus Pfenninger, Christopher A. Klausmeier, Elena Litchman, and Jana Hinners
EGUsphere, https://doi.org/10.5194/egusphere-2024-3297, https://doi.org/10.5194/egusphere-2024-3297, 2024
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Marine ecosystem models (MEMs) are valuable for assessing the threats of global warming to biodiversity and ecosystem functioning, but their predictions vary widely. We argue that MEMs should consider evolutionary processes and undergo independent validation. Here, we present a novel framework for MEM development using validation data from sediment archives, which map long-term environmental and evolutionary change. Our approach is a crucial step towards improving the predictive power of MEMs.
Joost de Vries, Fanny Monteiro, Gerald Langer, Colin Brownlee, and Glen Wheeler
Biogeosciences, 21, 1707–1727, https://doi.org/10.5194/bg-21-1707-2024, https://doi.org/10.5194/bg-21-1707-2024, 2024
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Calcifying phytoplankton (coccolithophores) utilize a life cycle in which they can grow and divide into two different phases. These two phases (HET and HOL) vary in terms of their physiology and distributions, with many unknowns about what the key differences are. Using a combination of lab experiments and model simulations, we find that nutrient storage is a critical difference between the two phases and that this difference allows them to inhabit different nitrogen input regimes.
Giulia Lodi, Julia Cooke, Rebecca A. Pickering, Lucie Cassarino, Mike Murray-Hudson, Keotshephile Mosimane, and Daniel J. Conley
EGUsphere, https://doi.org/10.5194/egusphere-2024-225, https://doi.org/10.5194/egusphere-2024-225, 2024
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Papyrus, Cyperus papyrus, is abundant in the Okavango Delta. We explored nutrient and Silicon (Si) isotopes distribution in papyrus to learn more about how this species affects nutrient cycles which are still moderately understood in Botswana. We found large amounts of Si in roots, rhizomes, stems and umbels. We showed that this plant takes up lighter Si isotopes and deposits lighter isotopes first, starting in the roots, leading to an enrichment in heavy isotopes along the transpiration stream.
Anna Belcher, Sian F. Henley, Katharine Hendry, Marianne Wootton, Lisa Friberg, Ursula Dallman, Tong Wang, Christopher Coath, and Clara Manno
Biogeosciences, 20, 3573–3591, https://doi.org/10.5194/bg-20-3573-2023, https://doi.org/10.5194/bg-20-3573-2023, 2023
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The oceans play a crucial role in the uptake of atmospheric carbon dioxide, particularly the Southern Ocean. The biological pumping of carbon from the surface to the deep ocean is key to this. Using sediment trap samples from the Scotia Sea, we examine biogeochemical fluxes of carbon, nitrogen, and biogenic silica and their stable isotope compositions. We find phytoplankton community structure and physically mediated processes are important controls on particulate fluxes to the deep ocean.
Rui Ying, Fanny M. Monteiro, Jamie D. Wilson, and Daniela N. Schmidt
Geosci. Model Dev., 16, 813–832, https://doi.org/10.5194/gmd-16-813-2023, https://doi.org/10.5194/gmd-16-813-2023, 2023
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Planktic foraminifera are marine-calcifying zooplankton; their shells are widely used to measure past temperature and productivity. We developed ForamEcoGEnIE 2.0 to simulate the four subgroups of this organism. We found that the relative abundance distribution agrees with marine sediment core-top data and that carbon export and biomass are close to sediment trap and plankton net observations respectively. This model provides the opportunity to study foraminiferal ecology in any geological era.
Michael J. Whitehouse, Katharine R. Hendry, Geraint A. Tarling, Sally E. Thorpe, and Petra ten Hoopen
Earth Syst. Sci. Data, 15, 211–224, https://doi.org/10.5194/essd-15-211-2023, https://doi.org/10.5194/essd-15-211-2023, 2023
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We present a database of Southern Ocean macronutrient, temperature and salinity measurements collected on 20 oceanographic cruises between 1980 and 2009. Vertical profiles and underway surface measurements were collected year-round as part of an integrated ecosystem study. Our data provide a novel view of biogeochemical cycling in biologically productive regions across a critical period in recent climate history and will contribute to a better understanding of the drivers of primary production.
James P. J. Ward, Katharine R. Hendry, Sandra Arndt, Johan C. Faust, Felipe S. Freitas, Sian F. Henley, Jeffrey W. Krause, Christian März, Allyson C. Tessin, and Ruth L. Airs
Biogeosciences, 19, 3445–3467, https://doi.org/10.5194/bg-19-3445-2022, https://doi.org/10.5194/bg-19-3445-2022, 2022
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The seafloor plays an important role in the cycling of silicon (Si), a key nutrient that promotes marine primary productivity. In our model study, we disentangle major controls on the seafloor Si cycle to better anticipate the impacts of continued warming and sea ice melt in the Barents Sea. We uncover a coupling of the iron redox and Si cycles, dissolution of lithogenic silicates, and authigenic clay formation, comprising a Si sink that could have implications for the Arctic Ocean Si budget.
Katherine A. Crichton, Andy Ridgwell, Daniel J. Lunt, Alex Farnsworth, and Paul N. Pearson
Clim. Past, 17, 2223–2254, https://doi.org/10.5194/cp-17-2223-2021, https://doi.org/10.5194/cp-17-2223-2021, 2021
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The middle Miocene (15 Ma) was a period of global warmth up to 8 °C warmer than present. We investigate changes in ocean circulation and heat distribution since the middle Miocene and the cooling to the present using the cGENIE Earth system model. We create seven time slices at ~2.5 Myr intervals, constrained with paleo-proxy data, showing a progressive reduction in atmospheric CO2 and a strengthening of the Atlantic Meridional Overturning Circulation.
Yoshiki Kanzaki, Dominik Hülse, Sandra Kirtland Turner, and Andy Ridgwell
Geosci. Model Dev., 14, 5999–6023, https://doi.org/10.5194/gmd-14-5999-2021, https://doi.org/10.5194/gmd-14-5999-2021, 2021
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Sedimentary carbonate plays a central role in regulating Earth’s carbon cycle and climate, and also serves as an archive of paleoenvironments, hosting various trace elements/isotopes. To help obtain
trueenvironmental changes from carbonate records over diagenetic distortion, IMP has been newly developed and has the capability to simulate the diagenesis of multiple carbonate particles and implement different styles of particle mixing by benthos using an adapted transition matrix method.
Jun Shao, Lowell D. Stott, Laurie Menviel, Andy Ridgwell, Malin Ödalen, and Mayhar Mohtadi
Clim. Past, 17, 1507–1521, https://doi.org/10.5194/cp-17-1507-2021, https://doi.org/10.5194/cp-17-1507-2021, 2021
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Planktic and shallow benthic foraminiferal stable carbon isotope
(δ13C) data show a rapid decline during the last deglaciation. This widespread signal was linked to respired carbon released from the deep ocean and its transport through the upper-ocean circulation. Using numerical simulations in which a stronger flux of respired carbon upwells and outcrops in the Southern Ocean, we find that the depleted δ13C signal is transmitted to the rest of the upper ocean through air–sea gas exchange.
Markus Adloff, Andy Ridgwell, Fanny M. Monteiro, Ian J. Parkinson, Alexander J. Dickson, Philip A. E. Pogge von Strandmann, Matthew S. Fantle, and Sarah E. Greene
Geosci. Model Dev., 14, 4187–4223, https://doi.org/10.5194/gmd-14-4187-2021, https://doi.org/10.5194/gmd-14-4187-2021, 2021
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We present the first representation of the trace metals Sr, Os, Li and Ca in a 3D Earth system model (cGENIE). The simulation of marine metal sources (weathering, hydrothermal input) and sinks (deposition) reproduces the observed concentrations and isotopic homogeneity of these metals in the modern ocean. With these new tracers, cGENIE can be used to test hypotheses linking these metal cycles and the cycling of other elements like O and C and simulate their dynamic response to external forcing.
Sebastiaan J. van de Velde, Dominik Hülse, Christopher T. Reinhard, and Andy Ridgwell
Geosci. Model Dev., 14, 2713–2745, https://doi.org/10.5194/gmd-14-2713-2021, https://doi.org/10.5194/gmd-14-2713-2021, 2021
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Biogeochemical interactions between iron and sulfur are central to the long-term biogeochemical evolution of Earth’s oceans. Here, we introduce an iron–sulphur cycle in a model of Earth's oceans. Our analyses show that the results of the model are robust towards parameter choices and that simulated concentrations and reactions are comparable to those observed in ancient ocean analogues (anoxic lakes). Our model represents an important step forward in the study of iron–sulfur cycling.
Petra Zahajská, Carolina Olid, Johanna Stadmark, Sherilyn C. Fritz, Sophie Opfergelt, and Daniel J. Conley
Biogeosciences, 18, 2325–2345, https://doi.org/10.5194/bg-18-2325-2021, https://doi.org/10.5194/bg-18-2325-2021, 2021
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The drivers of high accumulation of single-cell siliceous algae (diatoms) in a high-latitude lake have not been fully characterized before. We studied silicon cycling of the lake through water, radon, silicon, and stable silicon isotope balances. Results showed that groundwater brings 3 times more water and dissolved silica than the stream inlet. We demonstrate that groundwater discharge and low sediment deposition have driven the high diatom accumulation in the studied lake in the past century.
Joost de Vries, Fanny Monteiro, Glen Wheeler, Alex Poulton, Jelena Godrijan, Federica Cerino, Elisa Malinverno, Gerald Langer, and Colin Brownlee
Biogeosciences, 18, 1161–1184, https://doi.org/10.5194/bg-18-1161-2021, https://doi.org/10.5194/bg-18-1161-2021, 2021
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Coccolithophores are important calcifying phytoplankton with an overlooked life cycle. We compile a global dataset of marine coccolithophore abundance to investigate the environmental characteristics of each life cycle phase. We find that both phases contribute to coccolithophore abundance and that their different environmental preference increases coccolithophore habitat. Accounting for the life cycle of coccolithophores is thus crucial for understanding their ecology and biogeochemical impact.
Katherine A. Crichton, Jamie D. Wilson, Andy Ridgwell, and Paul N. Pearson
Geosci. Model Dev., 14, 125–149, https://doi.org/10.5194/gmd-14-125-2021, https://doi.org/10.5194/gmd-14-125-2021, 2021
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Temperature is a controller of metabolic processes and therefore also a controller of the ocean's biological carbon pump (BCP). We calibrate a temperature-dependent version of the BCP in the cGENIE Earth system model. Since the pre-industrial period, warming has intensified near-surface nutrient recycling, supporting production and largely offsetting stratification-induced surface nutrient limitation. But at the same time less carbon that sinks out of the surface then reaches the deep ocean.
Christopher T. Reinhard, Stephanie L. Olson, Sandra Kirtland Turner, Cecily Pälike, Yoshiki Kanzaki, and Andy Ridgwell
Geosci. Model Dev., 13, 5687–5706, https://doi.org/10.5194/gmd-13-5687-2020, https://doi.org/10.5194/gmd-13-5687-2020, 2020
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We provide documentation and testing of new developments for the oceanic and atmospheric methane cycles in the cGENIE Earth system model. The model is designed to explore Earth's methane cycle across a wide range of timescales and scenarios, in particular assessing the mean climate state and climate perturbations in Earth's deep past. We further document the impact of atmospheric oxygen levels and ocean chemistry on fluxes of methane to the atmosphere from the ocean biosphere.
Johanna Stadmark, Claudia Jesus-Rydin, and Daniel J. Conley
Adv. Geosci., 53, 107–115, https://doi.org/10.5194/adgeo-53-107-2020, https://doi.org/10.5194/adgeo-53-107-2020, 2020
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A similar proportion of women and men that submit applications to for example the European Research Council are successful in receiving funding. However, in this article we show that in all countries women are applying to a lower extent than their proportion of the workforce of researchers in the higher education sector would suggest, and men are therefore allocated disproportionally more research funds. We speculate on potential causes and hope to stimulate future investigations on this topic.
Niels A. G. M. van Helmond, Elizabeth K. Robertson, Daniel J. Conley, Martijn Hermans, Christoph Humborg, L. Joëlle Kubeneck, Wytze K. Lenstra, and Caroline P. Slomp
Biogeosciences, 17, 2745–2766, https://doi.org/10.5194/bg-17-2745-2020, https://doi.org/10.5194/bg-17-2745-2020, 2020
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We studied the removal of phosphorus (P) and nitrogen (N) in the eutrophic Stockholm archipelago (SA). High sedimentation rates and sediment P contents lead to high P burial. Benthic denitrification is the primary nitrate-reducing pathway. Together, these mechanisms limit P and N transport to the open Baltic Sea. We expect that further nutrient load reduction will contribute to recovery of the SA from low-oxygen conditions and that the sediments will continue to remove part of the P and N loads.
Malin Ödalen, Jonas Nycander, Andy Ridgwell, Kevin I. C. Oliver, Carlye D. Peterson, and Johan Nilsson
Biogeosciences, 17, 2219–2244, https://doi.org/10.5194/bg-17-2219-2020, https://doi.org/10.5194/bg-17-2219-2020, 2020
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In glacial periods, ocean uptake of carbon is likely a key player for achieving low atmospheric CO2. In climate models, ocean biological uptake of carbon (C) and phosphorus (P) are often assumed to occur in fixed proportions.
In this study, we allow the ratio of C : P to vary and simulate, to first approximation, the complex biological changes that occur in the ocean over long timescales. We show here that, for glacial–interglacial cycles, this complexity contributes to low atmospheric CO2.
Stephanie Dutkiewicz, Pedro Cermeno, Oliver Jahn, Michael J. Follows, Anna E. Hickman, Darcy A. A. Taniguchi, and Ben A. Ward
Biogeosciences, 17, 609–634, https://doi.org/10.5194/bg-17-609-2020, https://doi.org/10.5194/bg-17-609-2020, 2020
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Phytoplankton are an essential component of the marine food web and earth's carbon cycle. We use observations, ecological theory and a unique trait-based ecosystem model to explain controls on patterns of marine phytoplankton biodiversity. We find that different dimensions of diversity (size classes, biogeochemical functional groups, thermal norms) are controlled by a disparate combination of mechanisms. This may explain why previous studies of phytoplankton diversity had conflicting results.
Yoshiki Kanzaki, Bernard P. Boudreau, Sandra Kirtland Turner, and Andy Ridgwell
Geosci. Model Dev., 12, 4469–4496, https://doi.org/10.5194/gmd-12-4469-2019, https://doi.org/10.5194/gmd-12-4469-2019, 2019
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This paper provides eLABS, an extension of the lattice-automaton bioturbation simulator LABS. In our new model, the benthic animal behavior interacts and changes dynamically with oxygen and organic matter concentrations and the water flows caused by benthic animals themselves, in a 2-D marine-sediment grid. The model can address the mechanisms behind empirical observations of bioturbation based on the interactions between physical, chemical and biological aspects of marine sediment.
Jamie D. Wilson, Stephen Barker, Neil R. Edwards, Philip B. Holden, and Andy Ridgwell
Biogeosciences, 16, 2923–2936, https://doi.org/10.5194/bg-16-2923-2019, https://doi.org/10.5194/bg-16-2923-2019, 2019
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The remains of plankton rain down from the surface ocean to the deep ocean, acting to store CO2 in the deep ocean. We used a model of biology and ocean circulation to explore the importance of this process in different regions of the ocean. The amount of CO2 stored in the deep ocean is most sensitive to changes in the Southern Ocean. As plankton in the Southern Ocean are likely those most impacted by future climate change, the amount of CO2 they store in the deep ocean could also be affected.
Krista M. S. Kemppinen, Philip B. Holden, Neil R. Edwards, Andy Ridgwell, and Andrew D. Friend
Clim. Past, 15, 1039–1062, https://doi.org/10.5194/cp-15-1039-2019, https://doi.org/10.5194/cp-15-1039-2019, 2019
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We simulate the Last Glacial Maximum atmospheric CO2 decrease with a large ensemble of parameter sets to investigate the range of possible physical and biogeochemical Earth system changes accompanying the CO2 decrease. Amongst the dominant ensemble changes is an increase in terrestrial carbon, which we attribute to a slower soil respiration rate, and the preservation of carbon by the LGM ice sheets. Further investigation into the role of terrestrial carbon is warranted.
Maria Grigoratou, Fanny M. Monteiro, Daniela N. Schmidt, Jamie D. Wilson, Ben A. Ward, and Andy Ridgwell
Biogeosciences, 16, 1469–1492, https://doi.org/10.5194/bg-16-1469-2019, https://doi.org/10.5194/bg-16-1469-2019, 2019
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The paper presents a novel study based on the traits of shell size, calcification and feeding behaviour of two planktonic foraminifera life stages using modelling simulations. With the model, we tested the cost and benefit of calcification and explored how the interactions of planktonic foraminifera among other plankton groups influence their biomass under different environmental conditions. Our results provide new insights into environmental controls in planktonic foraminifera ecology.
Wytze K. Lenstra, Matthias Egger, Niels A. G. M. van Helmond, Emma Kritzberg, Daniel J. Conley, and Caroline P. Slomp
Biogeosciences, 15, 6979–6996, https://doi.org/10.5194/bg-15-6979-2018, https://doi.org/10.5194/bg-15-6979-2018, 2018
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We show that burial rates of phosphorus (P) in an estuary in the northern Baltic Sea are very high. We demonstrate that at high sedimentation rates, P retention in the sediment is related to the formation of vivianite. With a reactive transport model, we assess the sensitivity of sedimentary vivianite formation. We suggest that enrichments of iron and P in the sediment are linked to periods of enhanced riverine input of Fe, which subsequently strongly enhances P burial in coastal sediments.
Ben A. Ward, Jamie D. Wilson, Ros M. Death, Fanny M. Monteiro, Andrew Yool, and Andy Ridgwell
Geosci. Model Dev., 11, 4241–4267, https://doi.org/10.5194/gmd-11-4241-2018, https://doi.org/10.5194/gmd-11-4241-2018, 2018
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A novel configuration of an Earth system model includes a diverse plankton community. The model – EcoGEnIE – is sufficiently complex to reproduce a realistic, size-structured plankton community, while at the same time retaining the efficiency to run to a global steady state (~ 10k years). The increased capabilities of EcoGEnIE will allow future exploration of ecological communities on much longer timescales than have so far been examined in global ocean models and particularly for past climate.
Tom Dunkley Jones, Hayley R. Manners, Murray Hoggett, Sandra Kirtland Turner, Thomas Westerhold, Melanie J. Leng, Richard D. Pancost, Andy Ridgwell, Laia Alegret, Rob Duller, and Stephen T. Grimes
Clim. Past, 14, 1035–1049, https://doi.org/10.5194/cp-14-1035-2018, https://doi.org/10.5194/cp-14-1035-2018, 2018
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The Paleocene–Eocene Thermal Maximum (PETM) is a transient global warming event associated with a doubling of atmospheric carbon dioxide concentrations. Here we document a major increase in sediment accumulation rates on a subtropical continental margin during the PETM, likely due to marked changes in hydro-climates and sediment transport. These high sedimentation rates persist through the event and may play a key role in the removal of carbon from the atmosphere by the burial of organic carbon.
Dominik Hülse, Sandra Arndt, Stuart Daines, Pierre Regnier, and Andy Ridgwell
Geosci. Model Dev., 11, 2649–2689, https://doi.org/10.5194/gmd-11-2649-2018, https://doi.org/10.5194/gmd-11-2649-2018, 2018
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We present a 1-D analytical diagenetic model resolving organic matter (OM) cycling and the associated biogeochemical dynamics in marine sediments designed to be coupled to Earth system models (ESMs). The reaction network accounts for the most important reactions associated with OM dynamics. The coupling is described and the OM degradation rate constant is tuned. Various observations, such as pore water profiles, sediment water interface fluxes and OM content, are reproduced with good accuracy.
Malin Ödalen, Jonas Nycander, Kevin I. C. Oliver, Laurent Brodeau, and Andy Ridgwell
Biogeosciences, 15, 1367–1393, https://doi.org/10.5194/bg-15-1367-2018, https://doi.org/10.5194/bg-15-1367-2018, 2018
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We conclude that different initial states for an ocean model result in different capacities for ocean carbon storage due to differences in the ocean circulation state and the origin of the carbon in the initial ocean carbon reservoir. This could explain why it is difficult to achieve comparable responses of the ocean carbon system in model inter-comparison studies in which the initial states vary between models. We show that this effect of the initial state is quantifiable.
Natalie S. Lord, Michel Crucifix, Dan J. Lunt, Mike C. Thorne, Nabila Bounceur, Harry Dowsett, Charlotte L. O'Brien, and Andy Ridgwell
Clim. Past, 13, 1539–1571, https://doi.org/10.5194/cp-13-1539-2017, https://doi.org/10.5194/cp-13-1539-2017, 2017
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We present projections of long-term changes in climate, produced using a statistical emulator based on climate data from a state-of-the-art climate model. We use the emulator to model changes in temperature and precipitation over the late Pliocene (3.3–2.8 million years before present) and the next 200 thousand years. The impact of the Earth's orbit and the atmospheric carbon dioxide concentration on climate is assessed, and the data for the late Pliocene are compared to proxy temperature data.
Taraka Davies-Barnard, Andy Ridgwell, Joy Singarayer, and Paul Valdes
Clim. Past, 13, 1381–1401, https://doi.org/10.5194/cp-13-1381-2017, https://doi.org/10.5194/cp-13-1381-2017, 2017
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We present the first model analysis using a fully coupled dynamic atmosphere–ocean–vegetation GCM over the last 120 kyr that quantifies the net effect of vegetation on climate. This analysis shows that over the whole period the biogeophysical effect (albedo, evapotranspiration) is dominant, and that the biogeochemical impacts may have a lower possible range than typically estimated. This emphasises the temporal reliance of the balance between biogeophysical and biogeochemical effects.
Markus Schartau, Philip Wallhead, John Hemmings, Ulrike Löptien, Iris Kriest, Shubham Krishna, Ben A. Ward, Thomas Slawig, and Andreas Oschlies
Biogeosciences, 14, 1647–1701, https://doi.org/10.5194/bg-14-1647-2017, https://doi.org/10.5194/bg-14-1647-2017, 2017
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Plankton models have become an integral part in marine ecosystem and biogeochemical research. These models differ in complexity and in their number of parameters. How values are assigned to parameters is essential. An overview of major methodologies of parameter estimation is provided. Aspects of parameter identification in the literature are diverse. Individual findings could be better synthesized if notation and expertise of the different scientific communities would be reasonably merged.
Raquel Vaquer-Sunyer, Heather E. Reader, Saraladevi Muthusamy, Markus V. Lindh, Jarone Pinhassi, Daniel J. Conley, and Emma S. Kritzberg
Biogeosciences, 13, 4751–4765, https://doi.org/10.5194/bg-13-4751-2016, https://doi.org/10.5194/bg-13-4751-2016, 2016
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Nitrogen-rich dissolved organic matter inputs from wastewater treatment plant effluents increased bacterial production and decreased primary production and community respiration. Nutrient amendments and seasonally variable environmental conditions lead to shifts in bacterial community composition. Increases in bacterial production and simultaneous decreases in primary production lead to more carbon being consumed in the microbial loop and reduce its availability to sustain the food web.
J. D. Wilson, A. Ridgwell, and S. Barker
Biogeosciences, 12, 5547–5562, https://doi.org/10.5194/bg-12-5547-2015, https://doi.org/10.5194/bg-12-5547-2015, 2015
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We explore whether ocean model transport rates, in the form of a transport matrix, can be used to estimate remineralisation rates from dissolved nutrient concentrations and infer vertical fluxes of particulate organic carbon. Estimated remineralisation rates are significantly sensitive to uncertainty in the observations and the modelled circulation. The remineralisation of dissolved organic matter is an additional source of uncertainty when inferring vertical fluxes from remineralisation rates.
C. Lenz, T. Jilbert, D.J. Conley, M. Wolthers, and C.P. Slomp
Biogeosciences, 12, 4875–4894, https://doi.org/10.5194/bg-12-4875-2015, https://doi.org/10.5194/bg-12-4875-2015, 2015
W. Clymans, L. Barão, N. Van der Putten, S. Wastegård, G. Gísladóttir, S. Björck, B. Moine, E. Struyf, and D. J. Conley
Biogeosciences, 12, 3789–3804, https://doi.org/10.5194/bg-12-3789-2015, https://doi.org/10.5194/bg-12-3789-2015, 2015
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Biogenic silica (BSi) is used as a proxy by soil scientists to identify biological effects on the Si cycle and by palaeoecologists to study environmental changes. We show the presence of tephra constituents can make measurements erroneous at low BSi concentrations, with repercussions for soil and palaeoecological studies. However, we also show that glass shards do not produce an identical dissolution signal to that of BSi, meaning they can be distinguished with appropriate experimental setups.
N. S. Jones, A. Ridgwell, and E. J. Hendy
Biogeosciences, 12, 1339–1356, https://doi.org/10.5194/bg-12-1339-2015, https://doi.org/10.5194/bg-12-1339-2015, 2015
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Production of calcium carbonate by coral reefs is important in the global carbon cycle. Using a global framework we evaluate four models of reef calcification against observed values. The temperature-only model showed significant skill in reproducing coral calcification rates. The absence of any predictive power for whole reef systems highlights the importance of coral cover and the need for an ecosystem modelling approach accounting for population dynamics in terms of mortality and recruitment.
R. Death, J. L. Wadham, F. Monteiro, A. M. Le Brocq, M. Tranter, A. Ridgwell, S. Dutkiewicz, and R. Raiswell
Biogeosciences, 11, 2635–2643, https://doi.org/10.5194/bg-11-2635-2014, https://doi.org/10.5194/bg-11-2635-2014, 2014
G. Colbourn, A. Ridgwell, and T. M. Lenton
Geosci. Model Dev., 6, 1543–1573, https://doi.org/10.5194/gmd-6-1543-2013, https://doi.org/10.5194/gmd-6-1543-2013, 2013
M. Eby, A. J. Weaver, K. Alexander, K. Zickfeld, A. Abe-Ouchi, A. A. Cimatoribus, E. Crespin, S. S. Drijfhout, N. R. Edwards, A. V. Eliseev, G. Feulner, T. Fichefet, C. E. Forest, H. Goosse, P. B. Holden, F. Joos, M. Kawamiya, D. Kicklighter, H. Kienert, K. Matsumoto, I. I. Mokhov, E. Monier, S. M. Olsen, J. O. P. Pedersen, M. Perrette, G. Philippon-Berthier, A. Ridgwell, A. Schlosser, T. Schneider von Deimling, G. Shaffer, R. S. Smith, R. Spahni, A. P. Sokolov, M. Steinacher, K. Tachiiri, K. Tokos, M. Yoshimori, N. Zeng, and F. Zhao
Clim. Past, 9, 1111–1140, https://doi.org/10.5194/cp-9-1111-2013, https://doi.org/10.5194/cp-9-1111-2013, 2013
P. B. Holden, N. R. Edwards, S. A. Müller, K. I. C. Oliver, R. M. Death, and A. Ridgwell
Biogeosciences, 10, 1815–1833, https://doi.org/10.5194/bg-10-1815-2013, https://doi.org/10.5194/bg-10-1815-2013, 2013
Related subject area
Climate and Earth system modeling
A protocol for model intercomparison of impacts of marine cloud brightening climate intervention
An extensible perturbed parameter ensemble for the Community Atmosphere Model version 6
Coupling the regional climate model ICON-CLM v2.6.6 to the Earth system model GCOAST-AHOI v2.0 using OASIS3-MCT v4.0
A fully coupled solid-particle microphysics scheme for stratospheric aerosol injections within the aerosol–chemistry–climate model SOCOL-AERv2
An improved representation of aerosol in the ECMWF IFS-COMPO 49R1 through the integration of EQSAM4Climv12 – a first attempt at simulating aerosol acidity
At-scale Model Output Statistics in mountain environments (AtsMOS v1.0)
Impact of ocean vertical-mixing parameterization on Arctic sea ice and upper-ocean properties using the NEMO-SI3 model
Bridging the gap: a new module for human water use in the Community Earth System Model version 2.2.1
A new lightning scheme in the Canadian Atmospheric Model (CanAM5.1): implementation, evaluation, and projections of lightning and fire in future climates
Methane dynamics in the Baltic Sea: investigating concentration, flux, and isotopic composition patterns using the coupled physical–biogeochemical model BALTSEM-CH4 v1.0
Split-explicit external mode solver in the finite volume sea ice–ocean model FESOM2
Applying double cropping and interactive irrigation in the North China Plain using WRF4.5
The sea ice component of GC5: coupling SI3 to HadGEM3 using conductive fluxes
CICE on a C-grid: new momentum, stress, and transport schemes for CICEv6.5
HyPhAICC v1.0: a hybrid physics–AI approach for probability fields advection shown through an application to cloud cover nowcasting
CICERO Simple Climate Model (CICERO-SCM v1.1.1) – an improved simple climate model with a parameter calibration tool
Development of a plant carbon–nitrogen interface coupling framework in a coupled biophysical-ecosystem–biogeochemical model (SSiB5/TRIFFID/DayCent-SOM v1.0)
Dynamical Madden–Julian Oscillation forecasts using an ensemble subseasonal-to-seasonal forecast system of the IAP-CAS model
Implementation of a brittle sea ice rheology in an Eulerian, finite-difference, C-grid modeling framework: impact on the simulated deformation of sea ice in the Arctic
HSW-V v1.0: localized injections of interactive volcanic aerosols and their climate impacts in a simple general circulation model
A 3D-Var assimilation scheme for vertical velocity with CMA-MESO v5.0
Updating the radiation infrastructure in MESSy (based on MESSy version 2.55)
An urban module coupled with the Variable Infiltration Capacity model to improve hydrothermal simulations in urban systems
Bayesian hierarchical model for bias-correcting climate models
Evaluation of the coupling of EMACv2.55 to the land surface and vegetation model JSBACHv4
Reduced floating-point precision in regional climate simulations: an ensemble-based statistical verification
TorchClim v1.0: a deep-learning plugin for climate model physics
Linking global terrestrial and ocean biogeochemistry with process-based, coupled freshwater algae–nutrient–solid dynamics in LM3-FANSY v1.0
Validating a microphysical prognostic stratospheric aerosol implementation in E3SMv2 using observations after the Mount Pinatubo eruption
Architectural Insights and Training Methodology Optimization of Pangu-Weather
Implementing detailed nucleation predictions in the Earth system model EC-Earth3.3.4: sulfuric acid–ammonia nucleation
Modeling biochar effects on soil organic carbon on croplands in a microbial decomposition model (MIMICS-BC_v1.0)
Hector V3.2.0: functionality and performance of a reduced-complexity climate model
Evaluation of CMIP6 model simulations of PM2.5 and its components over China
Robust handling of extremes in quantile mapping – "Murder your darlings"
Assessment of a tiling energy budget approach in a land surface model, ORCHIDEE-MICT (r8205)
Virtual Integration of Satellite and In-situ Observation Networks (VISION) v1.0: In-Situ Observations Simulator
Multivariate adjustment of drizzle bias using machine learning in European climate projections
Development and evaluation of the interactive Model for Air Pollution and Land Ecosystems (iMAPLE) version 1.0
A perspective on the next generation of Earth system model scenarios: towards representative emission pathways (REPs)
Evaluating downscaled products with expected hydroclimatic co-variances
Software sustainability of global impact models
Short-term effects of hurricanes on nitrate-nitrogen runoff loading: a case study of Hurricane Ida using E3SM land model (v2.1)
CARIB12: A Regional Community Earth System Model / Modular Ocean Model 6 Configuration of the Caribbean Sea
Parallel SnowModel (v1.0): a parallel implementation of a distributed snow-evolution modeling system (SnowModel)
GOSI9: UK Global Ocean and Sea Ice configurations
LB-SCAM: a learning-based method for efficient large-scale sensitivity analysis and tuning of the Single Column Atmosphere Model (SCAM)
Quantifying the impact of SST feedback frequency on Madden–Julian oscillation simulations
Systematic and objective evaluation of Earth system models: PCMDI Metrics Package (PMP) version 3
A revised model of global silicate weathering considering the influence of vegetation cover on erosion rate
Philip J. Rasch, Haruki Hirasawa, Mingxuan Wu, Sarah J. Doherty, Robert Wood, Hailong Wang, Andy Jones, James Haywood, and Hansi Singh
Geosci. Model Dev., 17, 7963–7994, https://doi.org/10.5194/gmd-17-7963-2024, https://doi.org/10.5194/gmd-17-7963-2024, 2024
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We introduce a protocol to compare computer climate simulations to better understand a proposed strategy intended to counter warming and climate impacts from greenhouse gas increases. This slightly changes clouds in six ocean regions to reflect more sunlight and cool the Earth. Example changes in clouds and climate are shown for three climate models. Cloud changes differ between the models, but precipitation and surface temperature changes are similar when their cooling effects are made similar.
Trude Eidhammer, Andrew Gettelman, Katherine Thayer-Calder, Duncan Watson-Parris, Gregory Elsaesser, Hugh Morrison, Marcus van Lier-Walqui, Ci Song, and Daniel McCoy
Geosci. Model Dev., 17, 7835–7853, https://doi.org/10.5194/gmd-17-7835-2024, https://doi.org/10.5194/gmd-17-7835-2024, 2024
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We describe a dataset where 45 parameters related to cloud processes in the Community Earth System Model version 2 (CESM2) Community Atmosphere Model version 6 (CAM6) are perturbed. Three sets of perturbed parameter ensembles (263 members) were created: current climate, preindustrial aerosol loading and future climate with sea surface temperature increased by 4 K.
Ha Thi Minh Ho-Hagemann, Vera Maurer, Stefan Poll, and Irina Fast
Geosci. Model Dev., 17, 7815–7834, https://doi.org/10.5194/gmd-17-7815-2024, https://doi.org/10.5194/gmd-17-7815-2024, 2024
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The regional Earth system model GCOAST-AHOI v2.0 that includes the regional climate model ICON-CLM coupled to the ocean model NEMO and the hydrological discharge model HD via the OASIS3-MCT coupler can be a useful tool for conducting long-term regional climate simulations over the EURO-CORDEX domain. The new OASIS3-MCT coupling interface implemented in ICON-CLM makes it more flexible for coupling to an external ocean model and an external hydrological discharge model.
Sandro Vattioni, Rahel Weber, Aryeh Feinberg, Andrea Stenke, John A. Dykema, Beiping Luo, Georgios A. Kelesidis, Christian A. Bruun, Timofei Sukhodolov, Frank N. Keutsch, Thomas Peter, and Gabriel Chiodo
Geosci. Model Dev., 17, 7767–7793, https://doi.org/10.5194/gmd-17-7767-2024, https://doi.org/10.5194/gmd-17-7767-2024, 2024
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We quantified impacts and efficiency of stratospheric solar climate intervention via solid particle injection. Microphysical interactions of solid particles with the sulfur cycle were interactively coupled to the heterogeneous chemistry scheme and the radiative transfer code of an aerosol–chemistry–climate model. Compared to injection of SO2 we only find a stronger cooling efficiency for solid particles when normalizing to the aerosol load but not when normalizing to the injection rate.
Samuel Rémy, Swen Metzger, Vincent Huijnen, Jason E. Williams, and Johannes Flemming
Geosci. Model Dev., 17, 7539–7567, https://doi.org/10.5194/gmd-17-7539-2024, https://doi.org/10.5194/gmd-17-7539-2024, 2024
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In this paper we describe the development of the future operational cycle 49R1 of the IFS-COMPO system, used for operational forecasts of atmospheric composition in the CAMS project, and focus on the implementation of the thermodynamical model EQSAM4Clim version 12. The implementation of EQSAM4Clim significantly improves the simulated secondary inorganic aerosol surface concentration. The new aerosol and precipitation acidity diagnostics showed good agreement against observational datasets.
Maximillian Van Wyk de Vries, Tom Matthews, L. Baker Perry, Nirakar Thapa, and Rob Wilby
Geosci. Model Dev., 17, 7629–7643, https://doi.org/10.5194/gmd-17-7629-2024, https://doi.org/10.5194/gmd-17-7629-2024, 2024
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This paper introduces the AtsMOS workflow, a new tool for improving weather forecasts in mountainous areas. By combining advanced statistical techniques with local weather data, AtsMOS can provide more accurate predictions of weather conditions. Using data from Mount Everest as an example, AtsMOS has shown promise in better forecasting hazardous weather conditions, making it a valuable tool for communities in mountainous regions and beyond.
Sofia Allende, Anne Marie Treguier, Camille Lique, Clément de Boyer Montégut, François Massonnet, Thierry Fichefet, and Antoine Barthélemy
Geosci. Model Dev., 17, 7445–7466, https://doi.org/10.5194/gmd-17-7445-2024, https://doi.org/10.5194/gmd-17-7445-2024, 2024
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We study the parameters of the turbulent-kinetic-energy mixed-layer-penetration scheme in the NEMO model with regard to sea-ice-covered regions of the Arctic Ocean. This evaluation reveals the impact of these parameters on mixed-layer depth, sea surface temperature and salinity, and ocean stratification. Our findings demonstrate significant impacts on sea ice thickness and sea ice concentration, emphasizing the need for accurately representing ocean mixing to understand Arctic climate dynamics.
Sabin I. Taranu, David M. Lawrence, Yoshihide Wada, Ting Tang, Erik Kluzek, Sam Rabin, Yi Yao, Steven J. De Hertog, Inne Vanderkelen, and Wim Thiery
Geosci. Model Dev., 17, 7365–7399, https://doi.org/10.5194/gmd-17-7365-2024, https://doi.org/10.5194/gmd-17-7365-2024, 2024
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In this study, we improved a climate model by adding the representation of water use sectors such as domestic, industry, and agriculture. This new feature helps us understand how water is used and supplied in various areas. We tested our model from 1971 to 2010 and found that it accurately identifies areas with water scarcity. By modelling the competition between sectors when water availability is limited, the model helps estimate the intensity and extent of individual sectors' water shortages.
Cynthia Whaley, Montana Etten-Bohm, Courtney Schumacher, Ayodeji Akingunola, Vivek Arora, Jason Cole, Michael Lazare, David Plummer, Knut von Salzen, and Barbara Winter
Geosci. Model Dev., 17, 7141–7155, https://doi.org/10.5194/gmd-17-7141-2024, https://doi.org/10.5194/gmd-17-7141-2024, 2024
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This paper describes how lightning was added as a process in the Canadian Earth System Model in order to interactively respond to climate changes. As lightning is an important cause of global wildfires, this new model development allows for more realistic projections of how wildfires may change in the future, responding to a changing climate.
Erik Gustafsson, Bo G. Gustafsson, Martijn Hermans, Christoph Humborg, and Christian Stranne
Geosci. Model Dev., 17, 7157–7179, https://doi.org/10.5194/gmd-17-7157-2024, https://doi.org/10.5194/gmd-17-7157-2024, 2024
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Methane (CH4) cycling in the Baltic Proper is studied through model simulations, enabling a first estimate of key CH4 fluxes. A preliminary budget identifies benthic CH4 release as the dominant source and two main sinks: CH4 oxidation in the water (92 % of sinks) and outgassing to the atmosphere (8 % of sinks). This study addresses CH4 emissions from coastal seas and is a first step toward understanding the relative importance of open-water outgassing compared with local coastal hotspots.
Tridib Banerjee, Patrick Scholz, Sergey Danilov, Knut Klingbeil, and Dmitry Sidorenko
Geosci. Model Dev., 17, 7051–7065, https://doi.org/10.5194/gmd-17-7051-2024, https://doi.org/10.5194/gmd-17-7051-2024, 2024
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In this paper we propose a new alternative to one of the functionalities of the sea ice model FESOM2. The alternative we propose allows the model to capture and simulate fast changes in quantities like sea surface elevation more accurately. We also demonstrate that the new alternative is faster and more adept at taking advantages of highly parallelized computing infrastructure. We therefore show that this new alternative is a great addition to the sea ice model FESOM2.
Yuwen Fan, Zhao Yang, Min-Hui Lo, Jina Hur, and Eun-Soon Im
Geosci. Model Dev., 17, 6929–6947, https://doi.org/10.5194/gmd-17-6929-2024, https://doi.org/10.5194/gmd-17-6929-2024, 2024
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Irrigated agriculture in the North China Plain (NCP) has a significant impact on the local climate. To better understand this impact, we developed a specialized model specifically for the NCP region. This model allows us to simulate the double-cropping vegetation and the dynamic irrigation practices that are commonly employed in the NCP. This model shows improved performance in capturing the general crop growth, such as crop stages, biomass, crop yield, and vegetation greenness.
Ed Blockley, Emma Fiedler, Jeff Ridley, Luke Roberts, Alex West, Dan Copsey, Daniel Feltham, Tim Graham, David Livings, Clement Rousset, David Schroeder, and Martin Vancoppenolle
Geosci. Model Dev., 17, 6799–6817, https://doi.org/10.5194/gmd-17-6799-2024, https://doi.org/10.5194/gmd-17-6799-2024, 2024
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This paper documents the sea ice model component of the latest Met Office coupled model configuration, which will be used as the physical basis for UK contributions to CMIP7. Documentation of science options used in the configuration are given along with a brief model evaluation. This is the first UK configuration to use NEMO’s new SI3 sea ice model. We provide details on how SI3 was adapted to work with Met Office coupling methodology and documentation of coupling processes in the model.
Jean-François Lemieux, William H. Lipscomb, Anthony Craig, David A. Bailey, Elizabeth C. Hunke, Philippe Blain, Till A. S. Rasmussen, Mats Bentsen, Frédéric Dupont, David Hebert, and Richard Allard
Geosci. Model Dev., 17, 6703–6724, https://doi.org/10.5194/gmd-17-6703-2024, https://doi.org/10.5194/gmd-17-6703-2024, 2024
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We present the latest version of the CICE model. It solves equations that describe the dynamics and the growth and melt of sea ice. To do so, the domain is divided into grid cells and variables are positioned at specific locations in the cells. A new implementation (C-grid) is presented, with the velocity located on cell edges. Compared to the previous B-grid, the C-grid allows for a natural coupling with some oceanic and atmospheric models. It also allows for ice transport in narrow channels.
Rachid El Montassir, Olivier Pannekoucke, and Corentin Lapeyre
Geosci. Model Dev., 17, 6657–6681, https://doi.org/10.5194/gmd-17-6657-2024, https://doi.org/10.5194/gmd-17-6657-2024, 2024
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This study introduces a novel approach that combines physics and artificial intelligence (AI) for improved cloud cover forecasting. This approach outperforms traditional deep learning (DL) methods in producing realistic and physically consistent results while requiring less training data. This architecture provides a promising solution to overcome the limitations of classical AI methods and contributes to open up new possibilities for combining physical knowledge with deep learning models.
Marit Sandstad, Borgar Aamaas, Ane Nordlie Johansen, Marianne Tronstad Lund, Glen Philip Peters, Bjørn Hallvard Samset, Benjamin Mark Sanderson, and Ragnhild Bieltvedt Skeie
Geosci. Model Dev., 17, 6589–6625, https://doi.org/10.5194/gmd-17-6589-2024, https://doi.org/10.5194/gmd-17-6589-2024, 2024
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The CICERO-SCM has existed as a Fortran model since 1999 that calculates the radiative forcing and concentrations from emissions and is an upwelling diffusion energy balance model of the ocean that calculates temperature change. In this paper, we describe an updated version ported to Python and publicly available at https://github.com/ciceroOslo/ciceroscm (https://doi.org/10.5281/zenodo.10548720). This version contains functionality for parallel runs and automatic calibration.
Zheng Xiang, Yongkang Xue, Weidong Guo, Melannie D. Hartman, Ye Liu, and William J. Parton
Geosci. Model Dev., 17, 6437–6464, https://doi.org/10.5194/gmd-17-6437-2024, https://doi.org/10.5194/gmd-17-6437-2024, 2024
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A process-based plant carbon (C)–nitrogen (N) interface coupling framework has been developed which mainly focuses on plant resistance and N-limitation effects on photosynthesis, plant respiration, and plant phenology. A dynamic C / N ratio is introduced to represent plant resistance and self-adjustment. The framework has been implemented in a coupled biophysical-ecosystem–biogeochemical model, and testing results show a general improvement in simulating plant properties with this framework.
Yangke Liu, Qing Bao, Bian He, Xiaofei Wu, Jing Yang, Yimin Liu, Guoxiong Wu, Tao Zhu, Siyuan Zhou, Yao Tang, Ankang Qu, Yalan Fan, Anling Liu, Dandan Chen, Zhaoming Luo, Xing Hu, and Tongwen Wu
Geosci. Model Dev., 17, 6249–6275, https://doi.org/10.5194/gmd-17-6249-2024, https://doi.org/10.5194/gmd-17-6249-2024, 2024
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We give an overview of the Institute of Atmospheric Physics–Chinese Academy of Sciences subseasonal-to-seasonal ensemble forecasting system and Madden–Julian Oscillation forecast evaluation of the system. Compared to other S2S models, the IAP-CAS model has its benefits but also biases, i.e., underdispersive ensemble, overestimated amplitude, and faster propagation speed when forecasting MJO. We provide a reason for these biases and prospects for further improvement of this system in the future.
Laurent Brodeau, Pierre Rampal, Einar Ólason, and Véronique Dansereau
Geosci. Model Dev., 17, 6051–6082, https://doi.org/10.5194/gmd-17-6051-2024, https://doi.org/10.5194/gmd-17-6051-2024, 2024
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A new brittle sea ice rheology, BBM, has been implemented into the sea ice component of NEMO. We describe how a new spatial discretization framework was introduced to achieve this. A set of idealized and realistic ocean and sea ice simulations of the Arctic have been performed using BBM and the standard viscous–plastic rheology of NEMO. When compared to satellite data, our simulations show that our implementation of BBM leads to a fairly good representation of sea ice deformations.
Joseph P. Hollowed, Christiane Jablonowski, Hunter Y. Brown, Benjamin R. Hillman, Diana L. Bull, and Joseph L. Hart
Geosci. Model Dev., 17, 5913–5938, https://doi.org/10.5194/gmd-17-5913-2024, https://doi.org/10.5194/gmd-17-5913-2024, 2024
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Large volcanic eruptions deposit material in the upper atmosphere, which is capable of altering temperature and wind patterns of Earth's atmosphere for subsequent years. This research describes a new method of simulating these effects in an idealized, efficient atmospheric model. A volcanic eruption of sulfur dioxide is described with a simplified set of physical rules, which eventually cools the planetary surface. This model has been designed as a test bed for climate attribution studies.
Hong Li, Yi Yang, Jian Sun, Yuan Jiang, Ruhui Gan, and Qian Xie
Geosci. Model Dev., 17, 5883–5896, https://doi.org/10.5194/gmd-17-5883-2024, https://doi.org/10.5194/gmd-17-5883-2024, 2024
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Vertical atmospheric motions play a vital role in convective-scale precipitation forecasts by connecting atmospheric dynamics with cloud development. A three-dimensional variational vertical velocity assimilation scheme is developed within the high-resolution CMA-MESO model, utilizing the adiabatic Richardson equation as the observation operator. A 10 d continuous run and an individual case study demonstrate improved forecasts, confirming the scheme's effectiveness.
Matthias Nützel, Laura Stecher, Patrick Jöckel, Franziska Winterstein, Martin Dameris, Michael Ponater, Phoebe Graf, and Markus Kunze
Geosci. Model Dev., 17, 5821–5849, https://doi.org/10.5194/gmd-17-5821-2024, https://doi.org/10.5194/gmd-17-5821-2024, 2024
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We extended the infrastructure of our modelling system to enable the use of an additional radiation scheme. After calibrating the model setups to the old and the new radiation scheme, we find that the simulation with the new scheme shows considerable improvements, e.g. concerning the cold-point temperature and stratospheric water vapour. Furthermore, perturbations of radiative fluxes associated with greenhouse gas changes, e.g. of methane, tend to be improved when the new scheme is employed.
Yibing Wang, Xianhong Xie, Bowen Zhu, Arken Tursun, Fuxiao Jiang, Yao Liu, Dawei Peng, and Buyun Zheng
Geosci. Model Dev., 17, 5803–5819, https://doi.org/10.5194/gmd-17-5803-2024, https://doi.org/10.5194/gmd-17-5803-2024, 2024
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Urban expansion intensifies challenges like urban heat and urban dry islands. To address this, we developed an urban module, VIC-urban, in the Variable Infiltration Capacity (VIC) model. Tested in Beijing, VIC-urban accurately simulated turbulent heat fluxes, runoff, and land surface temperature. We provide a reliable tool for large-scale simulations considering urban environment and a systematic urban modelling framework within VIC, offering crucial insights for urban planners and designers.
Jeremy Carter, Erick A. Chacón-Montalván, and Amber Leeson
Geosci. Model Dev., 17, 5733–5757, https://doi.org/10.5194/gmd-17-5733-2024, https://doi.org/10.5194/gmd-17-5733-2024, 2024
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Climate models are essential tools in the study of climate change and its wide-ranging impacts on life on Earth. However, the output is often afflicted with some bias. In this paper, a novel model is developed to predict and correct bias in the output of climate models. The model captures uncertainty in the correction and explicitly models underlying spatial correlation between points. These features are of key importance for climate change impact assessments and resulting decision-making.
Anna Martin, Veronika Gayler, Benedikt Steil, Klaus Klingmüller, Patrick Jöckel, Holger Tost, Jos Lelieveld, and Andrea Pozzer
Geosci. Model Dev., 17, 5705–5732, https://doi.org/10.5194/gmd-17-5705-2024, https://doi.org/10.5194/gmd-17-5705-2024, 2024
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The study evaluates the land surface and vegetation model JSBACHv4 as a replacement for the simplified submodel SURFACE in EMAC. JSBACH mitigates earlier problems of soil dryness, which are critical for vegetation modelling. When analysed using different datasets, the coupled model shows strong correlations of key variables, such as land surface temperature, surface albedo and radiation flux. The versatility of the model increases significantly, while the overall performance does not degrade.
Hugo Banderier, Christian Zeman, David Leutwyler, Stefan Rüdisühli, and Christoph Schär
Geosci. Model Dev., 17, 5573–5586, https://doi.org/10.5194/gmd-17-5573-2024, https://doi.org/10.5194/gmd-17-5573-2024, 2024
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We investigate the effects of reduced-precision arithmetic in a state-of-the-art regional climate model by studying the results of 10-year-long simulations. After this time, the results of the reduced precision and the standard implementation are hardly different. This should encourage the use of reduced precision in climate models to exploit the speedup and memory savings it brings. The methodology used in this work can help researchers verify reduced-precision implementations of their model.
David Fuchs, Steven C. Sherwood, Abhnil Prasad, Kirill Trapeznikov, and Jim Gimlett
Geosci. Model Dev., 17, 5459–5475, https://doi.org/10.5194/gmd-17-5459-2024, https://doi.org/10.5194/gmd-17-5459-2024, 2024
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Machine learning (ML) of unresolved processes offers many new possibilities for improving weather and climate models, but integrating ML into the models has been an engineering challenge, and there are performance issues. We present a new software plugin for this integration, TorchClim, that is scalable and flexible and thereby allows a new level of experimentation with the ML approach. We also provide guidance on ML training and demonstrate a skillful hybrid ML atmosphere model.
Minjin Lee, Charles A. Stock, John P. Dunne, and Elena Shevliakova
Geosci. Model Dev., 17, 5191–5224, https://doi.org/10.5194/gmd-17-5191-2024, https://doi.org/10.5194/gmd-17-5191-2024, 2024
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Modeling global freshwater solid and nutrient loads, in both magnitude and form, is imperative for understanding emerging eutrophication problems. Such efforts, however, have been challenged by the difficulty of balancing details of freshwater biogeochemical processes with limited knowledge, input, and validation datasets. Here we develop a global freshwater model that resolves intertwined algae, solid, and nutrient dynamics and provide performance assessment against measurement-based estimates.
Hunter York Brown, Benjamin Wagman, Diana Bull, Kara Peterson, Benjamin Hillman, Xiaohong Liu, Ziming Ke, and Lin Lin
Geosci. Model Dev., 17, 5087–5121, https://doi.org/10.5194/gmd-17-5087-2024, https://doi.org/10.5194/gmd-17-5087-2024, 2024
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Explosive volcanic eruptions lead to long-lived, microscopic particles in the upper atmosphere which act to cool the Earth's surface by reflecting the Sun's light back to space. We include and test this process in a global climate model, E3SM. E3SM is tested against satellite and balloon observations of the 1991 eruption of Mt. Pinatubo, showing that with these particles in the model we reasonably recreate Pinatubo and its global effects. We also explore how particle size leads to these effects.
Deifilia Aurora To, Julian Quinting, Gholam Ali Hoshyaripour, Markus Götz, Achim Streit, and Charlotte Debus
EGUsphere, https://doi.org/10.5194/egusphere-2024-1714, https://doi.org/10.5194/egusphere-2024-1714, 2024
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Pangu-Weather is a breakthrough machine learning model in medium-range weather forecasting that considers three-dimensional atmospheric information. We show that using a simpler 2D framework improves robustness, speeds up training, and reduces computational needs by 20–30%. We introduce a training procedure that varies the importance of atmospheric variables over time to speed up training convergence. Decreasing computational demand increases accessibility of training and working with the model.
Carl Svenhag, Moa K. Sporre, Tinja Olenius, Daniel Yazgi, Sara M. Blichner, Lars P. Nieradzik, and Pontus Roldin
Geosci. Model Dev., 17, 4923–4942, https://doi.org/10.5194/gmd-17-4923-2024, https://doi.org/10.5194/gmd-17-4923-2024, 2024
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Our research shows the importance of modeling new particle formation (NPF) and growth of particles in the atmosphere on a global scale, as they influence the outcomes of clouds and our climate. With the global model EC-Earth3 we show that using a new method for NPF modeling, which includes new detailed processes with NH3 and H2SO4, significantly impacts the number of particles in the air and clouds and changes the radiation balance of the same magnitude as anthropogenic greenhouse emissions.
Mengjie Han, Qing Zhao, Xili Wang, Ying-Ping Wang, Philippe Ciais, Haicheng Zhang, Daniel S. Goll, Lei Zhu, Zhe Zhao, Zhixuan Guo, Chen Wang, Wei Zhuang, Fengchang Wu, and Wei Li
Geosci. Model Dev., 17, 4871–4890, https://doi.org/10.5194/gmd-17-4871-2024, https://doi.org/10.5194/gmd-17-4871-2024, 2024
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The impact of biochar (BC) on soil organic carbon (SOC) dynamics is not represented in most land carbon models used for assessing land-based climate change mitigation. Our study develops a BC model that incorporates our current understanding of BC effects on SOC based on a soil carbon model (MIMICS). The BC model can reproduce the SOC changes after adding BC, providing a useful tool to couple dynamic land models to evaluate the effectiveness of BC application for CO2 removal from the atmosphere.
Kalyn Dorheim, Skylar Gering, Robert Gieseke, Corinne Hartin, Leeya Pressburger, Alexey N. Shiklomanov, Steven J. Smith, Claudia Tebaldi, Dawn L. Woodard, and Ben Bond-Lamberty
Geosci. Model Dev., 17, 4855–4869, https://doi.org/10.5194/gmd-17-4855-2024, https://doi.org/10.5194/gmd-17-4855-2024, 2024
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Hector is an easy-to-use, global climate–carbon cycle model. With its quick run time, Hector can provide climate information from a run in a fraction of a second. Hector models on a global and annual basis. Here, we present an updated version of the model, Hector V3. In this paper, we document Hector’s new features. Hector V3 is capable of reproducing historical observations, and its future temperature projections are consistent with those of more complex models.
Fangxuan Ren, Jintai Lin, Chenghao Xu, Jamiu A. Adeniran, Jingxu Wang, Randall V. Martin, Aaron van Donkelaar, Melanie S. Hammer, Larry W. Horowitz, Steven T. Turnock, Naga Oshima, Jie Zhang, Susanne Bauer, Kostas Tsigaridis, Øyvind Seland, Pierre Nabat, David Neubauer, Gary Strand, Twan van Noije, Philippe Le Sager, and Toshihiko Takemura
Geosci. Model Dev., 17, 4821–4836, https://doi.org/10.5194/gmd-17-4821-2024, https://doi.org/10.5194/gmd-17-4821-2024, 2024
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We evaluate the performance of 14 CMIP6 ESMs in simulating total PM2.5 and its 5 components over China during 2000–2014. PM2.5 and its components are underestimated in almost all models, except that black carbon (BC) and sulfate are overestimated in two models, respectively. The underestimation is the largest for organic carbon (OC) and the smallest for BC. Models reproduce the observed spatial pattern for OC, sulfate, nitrate and ammonium well, yet the agreement is poorer for BC.
Peter Berg, Thomas Bosshard, Denica Bozhinova, Lars Bärring, Joakim Löw, Carolina Nilsson, Gustav Strandberg, Johan Södling, Johan Thuresson, Renate Wilcke, and Wei Yang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-98, https://doi.org/10.5194/gmd-2024-98, 2024
Revised manuscript accepted for GMD
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When bias adjusting climate model data using quantile mapping, one needs to prescribe what to do at the tails of the distribution, where a larger range of data is likely encountered outside the calibration period. The end result is highly dependent on the method used, and we show that one needs to exclude data in the calibration range to activate the extrapolation functionality also in that time period, else there will be discontinuities in the timeseries.
Yi Xi, Chunjing Qiu, Yuan Zhang, Dan Zhu, Shushi Peng, Gustaf Hugelius, Jinfeng Chang, Elodie Salmon, and Philippe Ciais
Geosci. Model Dev., 17, 4727–4754, https://doi.org/10.5194/gmd-17-4727-2024, https://doi.org/10.5194/gmd-17-4727-2024, 2024
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The ORCHIDEE-MICT model can simulate the carbon cycle and hydrology at a sub-grid scale but energy budgets only at a grid scale. This paper assessed the implementation of a multi-tiling energy budget approach in ORCHIDEE-MICT and found warmer surface and soil temperatures, higher soil moisture, and more soil organic carbon across the Northern Hemisphere compared with the original version.
Maria Rosa Russo, Sadie L. Bartholomew, David Hassell, Alex M. Mason, Erica Neininger, A. James Perman, David A. J. Sproson, Duncan Watson-Parris, and Nathan Luke Abraham
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-73, https://doi.org/10.5194/gmd-2024-73, 2024
Revised manuscript accepted for GMD
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Observational data and modelling capabilities are expanding in recent years, but there are still barriers preventing these two data sources to be used in synergy. Proper comparison requires generating, storing and handling a large amount of data. This manuscript describes the first step in the development of a new set of software tools, the ‘VISION toolkit’, which can enable the easy and efficient integration of observational and model data required for model evaluation.
Georgia Lazoglou, Theo Economou, Christina Anagnostopoulou, George Zittis, Anna Tzyrkalli, Pantelis Georgiades, and Jos Lelieveld
Geosci. Model Dev., 17, 4689–4703, https://doi.org/10.5194/gmd-17-4689-2024, https://doi.org/10.5194/gmd-17-4689-2024, 2024
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This study focuses on the important issue of the drizzle bias effect in regional climate models, described by an over-prediction of the number of rainy days while underestimating associated precipitation amounts. For this purpose, two distinct methodologies are applied and rigorously evaluated. These results are encouraging for using the multivariate machine learning method random forest to increase the accuracy of climate models concerning the projection of the number of wet days.
Xu Yue, Hao Zhou, Chenguang Tian, Yimian Ma, Yihan Hu, Cheng Gong, Hui Zheng, and Hong Liao
Geosci. Model Dev., 17, 4621–4642, https://doi.org/10.5194/gmd-17-4621-2024, https://doi.org/10.5194/gmd-17-4621-2024, 2024
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We develop the interactive Model for Air Pollution and Land Ecosystems (iMAPLE). The model considers the full coupling between carbon and water cycles, dynamic fire emissions, wetland methane emissions, biogenic volatile organic compound emissions, and trait-based ozone vegetation damage. Evaluations show that iMAPLE is a useful tool for the study of the interactions among climate, chemistry, and ecosystems.
Malte Meinshausen, Carl-Friedrich Schleussner, Kathleen Beyer, Greg Bodeker, Olivier Boucher, Josep G. Canadell, John S. Daniel, Aïda Diongue-Niang, Fatima Driouech, Erich Fischer, Piers Forster, Michael Grose, Gerrit Hansen, Zeke Hausfather, Tatiana Ilyina, Jarmo S. Kikstra, Joyce Kimutai, Andrew D. King, June-Yi Lee, Chris Lennard, Tabea Lissner, Alexander Nauels, Glen P. Peters, Anna Pirani, Gian-Kasper Plattner, Hans Pörtner, Joeri Rogelj, Maisa Rojas, Joyashree Roy, Bjørn H. Samset, Benjamin M. Sanderson, Roland Séférian, Sonia Seneviratne, Christopher J. Smith, Sophie Szopa, Adelle Thomas, Diana Urge-Vorsatz, Guus J. M. Velders, Tokuta Yokohata, Tilo Ziehn, and Zebedee Nicholls
Geosci. Model Dev., 17, 4533–4559, https://doi.org/10.5194/gmd-17-4533-2024, https://doi.org/10.5194/gmd-17-4533-2024, 2024
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The scientific community is considering new scenarios to succeed RCPs and SSPs for the next generation of Earth system model runs to project future climate change. To contribute to that effort, we reflect on relevant policy and scientific research questions and suggest categories for representative emission pathways. These categories are tailored to the Paris Agreement long-term temperature goal, high-risk outcomes in the absence of further climate policy and worlds “that could have been”.
Seung H. Baek, Paul A. Ullrich, Bo Dong, and Jiwoo Lee
EGUsphere, https://doi.org/10.5194/egusphere-2024-1456, https://doi.org/10.5194/egusphere-2024-1456, 2024
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We evaluate downscaled products by examining locally relevant covariances during convective and frontal precipitation events. Common statistical downscaling techniques preserve expected covariances during convective precipitation. However, they dampen future intensification of frontal precipitation captured in global climate models and dynamical downscaling. This suggests statistical downscaling may not fully resolve non-stationary hydrologic processes as compared to dynamical downscaling.
Emmanuel Nyenah, Petra Döll, Daniel S. Katz, and Robert Reinecke
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-97, https://doi.org/10.5194/gmd-2024-97, 2024
Revised manuscript accepted for GMD
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Research software is crucial for scientific progress but is often developed by scientists with limited training, time, and funding, leading to software that is hard to understand, (re)use, modify, and maintain. Our study across 10 research sectors highlights strengths in version control, open-source licensing, and documentation while emphasizing the need for containerization and code quality. Recommendations include workshops, code quality metrics, funding, and adherence to FAIR standards.
Yilin Fang, Hoang Viet Tran, and L. Ruby Leung
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-70, https://doi.org/10.5194/gmd-2024-70, 2024
Revised manuscript accepted for GMD
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Hurricanes may worsen the water quality in the lower Mississippi River Basin (LMRB) by increasing nutrient runoff. We found that runoff parameterizations greatly affect nitrate-nitrogen runoff simulated using an Earth system land model. Our simulations predicted increased nitrogen runoff in LMRB during Hurricane Ida in 2021, but less pronounced than the observations, indicating areas for model improvement to better understand and manage nutrient runoff loss during hurricanes in the region.
Giovanni G. Seijo-Ellis, Donata Giglio, Gustavo M. Marques, and Frank O. Bryan
EGUsphere, https://doi.org/10.5194/egusphere-2024-1378, https://doi.org/10.5194/egusphere-2024-1378, 2024
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A CESM/MOM6 regional configuration of the Caribbean Sea was developed as a response to the rising need of high-resolution models for climate impact studies. The configuration is validated for the period of 2000–2020 and improves significant errors in a low resolution model. Oceanic properties are well represented. Patterns of freshwater associated with the Amazon river are well captured and the mean flows across the multiple passages in the Caribbean Sea agree with observations.
Ross Mower, Ethan D. Gutmann, Glen E. Liston, Jessica Lundquist, and Soren Rasmussen
Geosci. Model Dev., 17, 4135–4154, https://doi.org/10.5194/gmd-17-4135-2024, https://doi.org/10.5194/gmd-17-4135-2024, 2024
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Higher-resolution model simulations are better at capturing winter snowpack changes across space and time. However, increasing resolution also increases the computational requirements. This work provides an overview of changes made to a distributed snow-evolution modeling system (SnowModel) to allow it to leverage high-performance computing resources. Continental simulations that were previously estimated to take 120 d can now be performed in 5 h.
Catherine Guiavarc'h, Dave Storkey, Adam T. Blaker, Ed Blockley, Alex Megann, Helene T. Hewitt, Michael J. Bell, Daley Calvert, Dan Copsey, Bablu Sinha, Sophia Moreton, Pierre Mathiot, and Bo An
EGUsphere, https://doi.org/10.5194/egusphere-2024-805, https://doi.org/10.5194/egusphere-2024-805, 2024
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GOSI9 is the new UK’s hierarchy of global ocean and sea ice models. Developed as part of a collaboration between several UK research institutes it will be used for various applications such as weather forecast and climate prediction. The models, based on NEMO, are available at three resolutions 1°, ¼° and 1/12°. GOSI9 improves upon previous version by reducing global temperature and salinity biases and enhancing the representation of the Arctic sea ice and of the Antarctic Circumpolar Current.
Jiaxu Guo, Juepeng Zheng, Yidan Xu, Haohuan Fu, Wei Xue, Lanning Wang, Lin Gan, Ping Gao, Wubing Wan, Xianwei Wu, Zhitao Zhang, Liang Hu, Gaochao Xu, and Xilong Che
Geosci. Model Dev., 17, 3975–3992, https://doi.org/10.5194/gmd-17-3975-2024, https://doi.org/10.5194/gmd-17-3975-2024, 2024
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To enhance the efficiency of experiments using SCAM, we train a learning-based surrogate model to facilitate large-scale sensitivity analysis and tuning of combinations of multiple parameters. Employing a hybrid method, we investigate the joint sensitivity of multi-parameter combinations across typical cases, identifying the most sensitive three-parameter combination out of 11. Subsequently, we conduct a tuning process aimed at reducing output errors in these cases.
Yung-Yao Lan, Huang-Hsiung Hsu, and Wan-Ling Tseng
Geosci. Model Dev., 17, 3897–3918, https://doi.org/10.5194/gmd-17-3897-2024, https://doi.org/10.5194/gmd-17-3897-2024, 2024
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This study uses the CAM5–SIT coupled model to investigate the effects of SST feedback frequency on the MJO simulations with intervals at 30 min, 1, 3, 6, 12, 18, 24, and 30 d. The simulations become increasingly unrealistic as the frequency of the SST feedback decreases. Our results suggest that more spontaneous air--sea interaction (e.g., ocean response within 3 d in this study) with high vertical resolution in the ocean model is key to the realistic simulation of the MJO.
Jiwoo Lee, Peter J. Gleckler, Min-Seop Ahn, Ana Ordonez, Paul A. Ullrich, Kenneth R. Sperber, Karl E. Taylor, Yann Y. Planton, Eric Guilyardi, Paul Durack, Celine Bonfils, Mark D. Zelinka, Li-Wei Chao, Bo Dong, Charles Doutriaux, Chengzhu Zhang, Tom Vo, Jason Boutte, Michael F. Wehner, Angeline G. Pendergrass, Daehyun Kim, Zeyu Xue, Andrew T. Wittenberg, and John Krasting
Geosci. Model Dev., 17, 3919–3948, https://doi.org/10.5194/gmd-17-3919-2024, https://doi.org/10.5194/gmd-17-3919-2024, 2024
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We introduce an open-source software, the PCMDI Metrics Package (PMP), developed for a comprehensive comparison of Earth system models (ESMs) with real-world observations. Using diverse metrics evaluating climatology, variability, and extremes simulated in thousands of simulations from the Coupled Model Intercomparison Project (CMIP), PMP aids in benchmarking model improvements across generations. PMP also enables efficient tracking of performance evolutions during ESM developments.
Haoyue Zuo, Yonggang Liu, Gaojun Li, Zhifang Xu, Liang Zhao, Zhengtang Guo, and Yongyun Hu
Geosci. Model Dev., 17, 3949–3974, https://doi.org/10.5194/gmd-17-3949-2024, https://doi.org/10.5194/gmd-17-3949-2024, 2024
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Compared to the silicate weathering fluxes measured at large river basins, the current models tend to systematically overestimate the fluxes over the tropical region, which leads to an overestimation of the global total weathering flux. The most possible cause of such bias is found to be the overestimation of tropical surface erosion, which indicates that the tropical vegetation likely slows down physical erosion significantly. We propose a way of taking this effect into account in models.
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Ridgwell, A. J., Watson, A. J., and Archer, D. E.: Modeling the response of the oceanic Si inventory to perturbation, and consequences for atmospheric CO2, Global Biogeochem. C., 16, 19-11–19-25, https://doi.org/10.1029/2002gb001877, 2002.
Ridgwell, A., Reinhard, C., van de Velde, S., Adloff, M., Monteiro, F., Kanzaki, Y., Vervoort, P., Ward, B., Hülse, D., Wilson, J., Naidoo-Bagwell, A., Turner, K., and Li, M.: derpycode/cgenie.muffin: v0.9.47 (v0.9.47), Zenodo [code], https://doi.org/10.5281/zenodo.10223295, 2023.
Séférian, R., Berthet, S., Yool, A., Palmiéri, J., Bopp, L., Tagliabue, A., Kwiatkowski, L., Aumont, O., Christian, J., Dunne, J., Gehlen, M., Ilyina, T., John, J. G., Li, H., Long, M. C., Luo, J. Y., Nakano, H., Romanou, A., Schwinger, J., Stock, C., Santana-Falcón, Y., Takano, Y., Tjiputra, J., Tsujino, H., Watanabe, M., Wu, T., Wu, F., and Yamamoto, A.: Tracking Improvement in Simulated Marine Biogeochemistry Between CMIP5 and CMIP6, Current Climate Change Reports, 6, 95–119, https://doi.org/10.1007/s40641-020-00160-0, 2020.
Tagliabue, A., Aumont, O., Death, R., Dunne, J. P., Dutkiewicz, S., Galbraith, E., Misumi, K., Moore, J. K., Ridgwell, A., Sherman, E., Stock, C., Vichi, M., Völker, C., and Yool, A.: How well do global ocean biogeochemistry models simulate dissolved iron distributions?, Global Biogeochem. Cy., 30, 149–174, https://doi.org/10.1002/2015gb005289, 2016.
Tanioka, T., Garcia, C., Larkin, A., Garcia, N., Fagan, A., and Martiny, A.: Global patterns and drivers of C:N:P in marine ecosystems, Research Square, https://doi.org/10.21203/rs.3.rs-1344335/v1, 2022.
Teng, Y.-C., Primeau, F. W., Moore, J. K., Lomas, M. W., and Martiny, A. C.: Global-scale variations of the ratios of carbon to phosphorus in exported marine organic matter, Nat. Geosci., 7, 895–898, https://doi.org/10.1038/ngeo2303, 2014.
Tréguer, P., Bowler, C., Moriceau, B., Dutkiewicz, S., Gehlen, M., Aumont, O., Bittner, L., Dugdale, R., Finkel, Z., Iudicone, D., Jahn, O., Guidi, L., Lasbleiz, M., Leblanc, K., Levy, M., and Pondaven, P.: Influence of diatom diversity on the ocean biological carbon pump, Nat. Geosci., 11, 27–37, https://doi.org/10.1038/s41561-017-0028-x, 2018.
Tréguer, P. J., Sutton, J. N., Brzezinski, M., Charette, M. A., Devries, T., Dutkiewicz, S., Ehlert, C., Hawkings, J., Leynaert, A., Liu, S. M., Llopis Monferrer, N., López-Acosta, M., Maldonado, M., Rahman, S., Ran, L., and Rouxel, O.: Reviews and syntheses: The biogeochemical cycle of silicon in the modern ocean, Biogeosciences, 18, 1269–1289, https://doi.org/10.5194/bg-18-1269-2021, 2021.
van de Velde, S. J., Hülse, D., Reinhard, C. T., and Ridgwell, A.: Iron and sulfur cycling in the cGENIE.muffin Earth system model (v0.9.21), Geosci. Model Dev., 14, 2713–2745, https://doi.org/10.5194/gmd-14-2713-2021, 2021.
Van Tol, H. M., Irwin, A. J., and Finkel, Z. V.: Macroevolutionary trends in silicoflagellate skeletal morphology: the costs and benefits of silicification, Paleobiology, 38, 391–402, https://doi.org/10.1666/11022.1, 2012.
Wang, W.-L., Moore, J. K., Martiny, A. C., and Primeau, F. W.: Convergent estimates of marine nitrogen fixation, Nature, 566, 205–211, https://doi.org/10.1038/s41586-019-0911-2, 2019.
Ward, B. A., Wilson, J. D., Death, R. M., Monteiro, F. M., Yool, A., and Ridgwell, A.: EcoGEnIE 1.0: plankton ecology in the cGEnIE Earth system model, Geosci. Model Dev., 11, 4241–4267, https://doi.org/10.5194/gmd-11-4241-2018, 2018.
Watterson, I. G.: Improved Simulation of Regional Climate by Global Models with Higher Resolution: Skill Scores Correlated with Grid Length, J. Climate, 28, 5985–6000, https://doi.org/10.1175/jcli-d-14-00702.1, 2015.
Wilson, J. D., Barker, S., and Ridgwell, A.: Assessment of the spatial variability in particulate organic matter and mineral sinking fluxes in the ocean interior: Implications for the ballast hypothesis, Global Biogeochem. Cy., 26, https://doi.org/10.1029/2012gb004398, 2012.
Wilson, J. D., Monteiro, F. M., Schmidt, D. N., Ward, B. A., and Ridgwell, A.: Linking Marine Plankton Ecosystems and Climate: A New Modeling Approach to the Warm Early Eocene Climate, Paleoceanogr. Paleocl., 33, 1439–1452, https://doi.org/10.1029/2018pa003374, 2018.
Yool, A., Popova, E. E., and Anderson, T. R.: MEDUSA-2.0: an intermediate complexity biogeochemical model of the marine carbon cycle for climate change and ocean acidification studies, Geosci. Model Dev., 6, 1767–1811, https://doi.org/10.5194/gmd-6-1767-2013, 2013.
Zhang, S., Liu, H., Ke, Y., and Li, B.: Effect of the Silica Content of Diatoms on Protozoan Grazing, Front. Mar. Sci., 4, 202, https://doi.org/10.3389/fmars.2017.00202, 2017.
Short summary
As an extension to the EcoGEnIE 1.0 Earth system model that features a diverse plankton community, EcoGEnIE 1.1 includes siliceous plankton diatoms and also considers their impact on biogeochemical cycles. With updates to existing nutrient cycles and the introduction of the silicon cycle, we see improved model performance relative to observational data. Through a more functionally diverse plankton community, the new model enables more comprehensive future study of ocean ecology.
As an extension to the EcoGEnIE 1.0 Earth system model that features a diverse plankton...
