Articles | Volume 15, issue 1
https://doi.org/10.5194/gmd-15-15-2022
https://doi.org/10.5194/gmd-15-15-2022
Development and technical paper
 | 
04 Jan 2022
Development and technical paper |  | 04 Jan 2022

PyCO2SYS v1.8: marine carbonate system calculations in Python

Matthew P. Humphreys, Ernie R. Lewis, Jonathan D. Sharp, and Denis Pierrot

Related authors

Synthesis of data products for ocean carbonate chemistry
Li-Qing Jiang, Amanda Fay, Jens Daniel Müller, Lydia Keppler, Dustin Carroll, Siv K. Lauvset, Tim DeVries, Judith Hauck, Christian Rödenbeck, Luke Gregor, Nicolas Metzl, Andrea J. Fassbender, Jean-Pierre Gattuso, Peter Landschützer, Rik Wanninkhof, Christopher Sabine, Simone R. Alin, Mario Hoppema, Are Olsen, Matthew P. Humphreys, Kumiko Azetsu-Scott, Dorothee C. E. Bakker, Leticia Barbero, Nicholas R. Bates, Nicole Besemer, Henry C. Bittig, Albert E. Boyd, Daniel Broullón, Wei-Jun Cai, Brendan R. Carter, Thi-Tuyet-Trang Chau, Chen-Tung Arthur Chen, Frédéric Cyr, John E. Dore, Ian Enochs, Richard A. Feely, Hernan E. Garcia, Marion Gehlen, Lucas Gloege, Melchor González-Dávila, Nicolas Gruber, Yosuke Iida, Masao Ishii, Esther Kennedy, Alex Kozyr, Nico Lange, Claire Lo Monaco, Derek P. Manzello, Galen A. McKinley, Natalie M. Monacci, Xose A. Padin, Ana M. Palacio-Castro, Fiz F. Pérez, Alizée Roobaert, J. Magdalena Santana-Casiano, Jonathan Sharp, Adrienne Sutton, Jim Swift, Toste Tanhua, Maciej Telszewski, Jens Terhaar, Ruben van Hooidonk, Anton Velo, Andrew J. Watson, Angelicque E. White, Zelun Wu, Hyelim Yoo, and Jiye Zeng
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2025-255,https://doi.org/10.5194/essd-2025-255, 2025
Preprint under review for ESSD
Short summary
From small scale variability to mesoscale stability in surface ocean pH: implications for air-sea CO2 equilibration
Louise Delaigue, Gert-Jan Reichart, Chris Galley, Yasmina Ourradi, and Matthew Paul Humphreys
EGUsphere, https://doi.org/10.5194/egusphere-2024-2853,https://doi.org/10.5194/egusphere-2024-2853, 2024
Short summary
Temperature effect on seawater fCO2 revisited: theoretical basis, uncertainty analysis and implications for parameterising carbonic acid equilibrium constants
Matthew P. Humphreys
Ocean Sci., 20, 1325–1350, https://doi.org/10.5194/os-20-1325-2024,https://doi.org/10.5194/os-20-1325-2024, 2024
Short summary
The annual update GLODAPv2.2023: the global interior ocean biogeochemical data product
Siv K. Lauvset, Nico Lange, Toste Tanhua, Henry C. Bittig, Are Olsen, Alex Kozyr, Marta Álvarez, Kumiko Azetsu-Scott, Peter J. Brown, Brendan R. Carter, Leticia Cotrim da Cunha, Mario Hoppema, Matthew P. Humphreys, Masao Ishii, Emil Jeansson, Akihiko Murata, Jens Daniel Müller, Fiz F. Pérez, Carsten Schirnick, Reiner Steinfeldt, Toru Suzuki, Adam Ulfsbo, Anton Velo, Ryan J. Woosley, and Robert M. Key
Earth Syst. Sci. Data, 16, 2047–2072, https://doi.org/10.5194/essd-16-2047-2024,https://doi.org/10.5194/essd-16-2047-2024, 2024
Short summary
GLODAPv2.2022: the latest version of the global interior ocean biogeochemical data product
Siv K. Lauvset, Nico Lange, Toste Tanhua, Henry C. Bittig, Are Olsen, Alex Kozyr, Simone Alin, Marta Álvarez, Kumiko Azetsu-Scott, Leticia Barbero, Susan Becker, Peter J. Brown, Brendan R. Carter, Leticia Cotrim da Cunha, Richard A. Feely, Mario Hoppema, Matthew P. Humphreys, Masao Ishii, Emil Jeansson, Li-Qing Jiang, Steve D. Jones, Claire Lo Monaco, Akihiko Murata, Jens Daniel Müller, Fiz F. Pérez, Benjamin Pfeil, Carsten Schirnick, Reiner Steinfeldt, Toru Suzuki, Bronte Tilbrook, Adam Ulfsbo, Anton Velo, Ryan J. Woosley, and Robert M. Key
Earth Syst. Sci. Data, 14, 5543–5572, https://doi.org/10.5194/essd-14-5543-2022,https://doi.org/10.5194/essd-14-5543-2022, 2022
Short summary

Related subject area

Oceanography
GREAT v1.0: Global Real-time Early Assessment of Tsunamis
Usama Kadri, Ali Abdolali, and Maxim Filimonov
Geosci. Model Dev., 18, 3487–3507, https://doi.org/10.5194/gmd-18-3487-2025,https://doi.org/10.5194/gmd-18-3487-2025, 2025
Short summary
Using automatic calibration to improve the physics behind complex numerical models: an example from a 3D lake model using Delft3D (v6.02.10) and DYNO-PODS (v1.0)
Marina Amadori, Abolfazl Irani Rahaghi, Damien Bouffard, and Marco Toffolon
Geosci. Model Dev., 18, 3473–3486, https://doi.org/10.5194/gmd-18-3473-2025,https://doi.org/10.5194/gmd-18-3473-2025, 2025
Short summary
Improvements to the Met Office's global ocean–sea ice forecasting system including model and data assimilation changes
Davi Mignac, Jennifer Waters, Daniel J. Lea, Matthew J. Martin, James While, Anthony T. Weaver, Arthur Vidard, Catherine Guiavarc'h, Dave Storkey, David Ford, Edward W. Blockley, Jonathan Baker, Keith Haines, Martin R. Price, Michael J. Bell, and Richard Renshaw
Geosci. Model Dev., 18, 3405–3425, https://doi.org/10.5194/gmd-18-3405-2025,https://doi.org/10.5194/gmd-18-3405-2025, 2025
Short summary
Resolution dependence of interlinked Southern Ocean biases in global coupled HadGEM3 models
David Storkey, Pierre Mathiot, Michael J. Bell, Dan Copsey, Catherine Guiavarc'h, Helene T. Hewitt, Jeff Ridley, and Malcolm J. Roberts
Geosci. Model Dev., 18, 2725–2745, https://doi.org/10.5194/gmd-18-2725-2025,https://doi.org/10.5194/gmd-18-2725-2025, 2025
Short summary
A new global high-resolution wave model for the tropical ocean using WAVEWATCH III version 7.14
Axelle Gaffet, Xavier Bertin, Damien Sous, Héloïse Michaud, Aron Roland, and Emmanuel Cordier
Geosci. Model Dev., 18, 1929–1946, https://doi.org/10.5194/gmd-18-1929-2025,https://doi.org/10.5194/gmd-18-1929-2025, 2025
Short summary

Cited articles

Abril, G., Bouillon, S., Darchambeau, F., Teodoru, C. R., Marwick, T. R., Tamooh, F., Ochieng Omengo, F., Geeraert, N., Deirmendjian, L., Polsenaere, P., and Borges, A. V.: Technical Note: Large overestimation of pCO2 calculated from pH and alkalinity in acidic, organic-rich freshwaters, Biogeosciences, 12, 67–78, https://doi.org/10.5194/bg-12-67-2015, 2015. a
Álvarez, M., Sanleón-Bartolomé, H., Tanhua, T., Mintrop, L., Luchetta, A., Cantoni, C., Schroeder, K., and Civitarese, G.: The CO2 system in the Mediterranean Sea: a basin wide perspective, Ocean Sci., 10, 69–92, https://doi.org/10.5194/os-10-69-2014, 2014. a
Bach, L. T.: Reconsidering the role of carbonate ion concentration in calcification by marine organisms, Biogeosciences, 12, 4939–4951, https://doi.org/10.5194/bg-12-4939-2015, 2015. a, b
Bakker, D. C. E., Pfeil, B., Landa, C. S., Metzl, N., O'Brien, K. M., Olsen, A., Smith, K., Cosca, C., Harasawa, S., Jones, S. D., Nakaoka, S., Nojiri, Y., Schuster, U., Steinhoff, T., Sweeney, C., Takahashi, T., Tilbrook, B., Wada, C., Wanninkhof, R., Alin, S. R., Balestrini, C. F., Barbero, L., Bates, N. R., Bianchi, A. A., Bonou, F., Boutin, J., Bozec, Y., Burger, E. F., Cai, W.-J., Castle, R. D., Chen, L., Chierici, M., Currie, K., Evans, W., Featherstone, C., Feely, R. A., Fransson, A., Goyet, C., Greenwood, N., Gregor, L., Hankin, S., Hardman-Mountford, N. J., Harlay, J., Hauck, J., Hoppema, M., Humphreys, M. P., Hunt, C. W., Huss, B., Ibánhez, J. S. P., Johannessen, T., Keeling, R., Kitidis, V., Körtzinger, A., Kozyr, A., Krasakopoulou, E., Kuwata, A., Landschützer, P., Lauvset, S. K., Lefèvre, N., Lo Monaco, C., Manke, A., Mathis, J. T., Merlivat, L., Millero, F. J., Monteiro, P. M. S., Munro, D. R., Murata, A., Newberger, T., Omar, A. M., Ono, T., Paterson, K., Pearce, D., Pierrot, D., Robbins, L. L., Saito, S., Salisbury, J., Schlitzer, R., Schneider, B., Schweitzer, R., Sieger, R., Skjelvan, I., Sullivan, K. F., Sutherland, S. C., Sutton, A. J., Tadokoro, K., Telszewski, M., Tuma, M., van Heuven, S. M. A. C., Vandemark, D., Ward, B., Watson, A. J., and Xu, S.: A multi-decade record of high-quality fCO2 data in version 3 of the Surface Ocean CO2 Atlas (SOCAT), Earth Syst. Sci. Data, 8, 383–413, https://doi.org/10.5194/essd-8-383-2016, 2016. a
Bradbury, J., Frostig, R., Hawkins, P., Johnson, M. J., Leary, C., Maclaurin, D., and Wanderman-Milne, S.: JAX: composable transformations of Python+NumPy programs, GitHub, available at: http://github.com/google/jax (last access: 23 December 2021), 2018. a
Download
Short summary
The ocean helps to mitigate our impact on Earth's climate by absorbing about a quarter of the carbon dioxide (CO2) released by human activities each year. However, once absorbed, chemical reactions between CO2 and water reduce seawater pH (ocean acidification), which may have adverse effects on marine ecosystems. Our Python package, PyCO2SYS, models the chemical reactions of CO2 in seawater, allowing us to quantify the corresponding changes in pH and related chemical properties.
Share