Articles | Volume 15, issue 1
https://doi.org/10.5194/gmd-15-15-2022
https://doi.org/10.5194/gmd-15-15-2022
Development and technical paper
 | 
04 Jan 2022
Development and technical paper |  | 04 Jan 2022

PyCO2SYS v1.8: marine carbonate system calculations in Python

Matthew P. Humphreys, Ernie R. Lewis, Jonathan D. Sharp, and Denis Pierrot

Related authors

The Global Ocean Data Analysis Project version 3 (GLODAPv3) – an internally consistent biogeochemical data product for the world ocean
Nico Lange, Siv K. Lauvset, Brendan R. Carter, Matthew P. Humphreys, Ryan J. Woosley, Are Olsen, Henry C. Bittig, Alex Kozyr, Marta Álvarez, Kumiko Azetsu-Scott, Susan Becker, Peter J. Brown, Leticia Cotrim da Cunha, Larissa Dias, Mario Hoppema, Masao Ishii, Emil Jeansson, Akihiko Murata, Jens Daniel Müller, Fiz F. Pérez, Carsten Schirnick, Reiner Steinfeldt, Adam Ulfsbo, Anton Velo, and Toste Tanhua
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2026-496,https://doi.org/10.5194/essd-2026-496, 2026
Preprint under review for ESSD
Short summary
Furthest-first inversion for internal consistency adjustments in the biogeochemical data product GLODAPv3
Matthew P. Humphreys, Siv K. Lauvset, Nico Lange, Henry C. Bittig, Brendan R. Carter, Mario Hoppema, Akihiko Murata, Are Olsen, Toste Tanhua, Adam Ulfsbo, Antón Velo, Ryan J. Woosley, Kumiko Azetsu-Scott, Jens D. Müller, and Fiz F. Pérez
EGUsphere, https://doi.org/10.5194/egusphere-2026-3063,https://doi.org/10.5194/egusphere-2026-3063, 2026
Short summary
Marine carbonate system variability from tidal to seasonal timescales at the interface between the North Sea and Wadden Sea
Yasmina Ourradi, Gert-Jan Reichart, Sonja van Leeuwen, and Matthew P. Humphreys
Biogeosciences, 23, 3323–3346, https://doi.org/10.5194/bg-23-3323-2026,https://doi.org/10.5194/bg-23-3323-2026, 2026
Short summary
RADIv2: an adaptable and versatile diagenetic model for coastal and open-ocean sediments
Hinne F. van der Zant, Olivier Sulpis, Jack J. Middelburg, Matthew P. Humphreys, Raphaël Savelli, Dustin Carroll, Dimitris Menemenlis, Kay Sušelj, and Vincent Le Fouest
Geosci. Model Dev., 19, 1965–1989, https://doi.org/10.5194/gmd-19-1965-2026,https://doi.org/10.5194/gmd-19-1965-2026, 2026
Short summary
Synthesis of data products for ocean carbonate chemistry
Li-Qing Jiang, Amanda Fay, Jens Daniel Müller, Luke Gregor, Alizée Roobaert, Lydia Keppler, Dustin Carroll, Siv K. Lauvset, Tim DeVries, Judith Hauck, Christian Rödenbeck, Nicolas Metzl, Andrea J. Fassbender, Jean-Pierre Gattuso, Peter Landschützer, Rik Wanninkhof, Christopher Sabine, Simone R. Alin, Mario Hoppema, Are Olsen, Matthew P. Humphreys, Kunal Chakraborty, Ana C. Franco, Kumiko Azetsu-Scott, Dorothee C. E. Bakker, Leticia Barbero, Nicholas R. Bates, Nicole Besemer, Henry C. Bittig, Albert E. Boyd, Daniel Broullón, Wei-Jun Cai, Brendan R. Carter, Thi-Tuyet-Trang Chau, Chen-Tung Arthur Chen, Frédéric Cyr, John E. Dore, Ian Enochs, Richard A. Feely, Hernan E. Garcia, Marion Gehlen, Prasanna Kanti Ghoshal, Lucas Gloege, Melchor González-Dávila, Nicolas Gruber, Debby Ianson, Yosuke Iida, Masao Ishii, Apurva Padamnabh Joshi, Esther Kennedy, Alex Kozyr, Nico Lange, Claire Lo Monaco, Derek P. Manzello, Galen A. McKinley, Natalie M. Monacci, Xose A. Padin, Ana M. Palacio-Castro, Fiz F. Pérez, J. Magdalena Santana-Casiano, Jonathan Sharp, Adrienne Sutton, Jim Swift, Toste Tanhua, Maciej Telszewski, Jens Terhaar, Ruben van Hooidonk, Anton Velo, Andrew J. Watson, Angelicque E. White, Zelun Wu, Liang Xue, Hyelim Yoo, Jiye Zeng, and Guorong Zhong
Earth Syst. Sci. Data, 18, 1405–1462, https://doi.org/10.5194/essd-18-1405-2026,https://doi.org/10.5194/essd-18-1405-2026, 2026
Short summary

Cited articles

Abril, G., Bouillon, S., Darchambeau, F., Teodoru, C. R., Marwick, T. R., Tamooh, F., Ochieng Omengo, F., Geeraert, N., Deirmendjian, L., Polsenaere, P., and Borges, A. V.: Technical Note: Large overestimation of pCO2 calculated from pH and alkalinity in acidic, organic-rich freshwaters, Biogeosciences, 12, 67–78, https://doi.org/10.5194/bg-12-67-2015, 2015. a
Álvarez, M., Sanleón-Bartolomé, H., Tanhua, T., Mintrop, L., Luchetta, A., Cantoni, C., Schroeder, K., and Civitarese, G.: The CO2 system in the Mediterranean Sea: a basin wide perspective, Ocean Sci., 10, 69–92, https://doi.org/10.5194/os-10-69-2014, 2014. a
Bach, L. T.: Reconsidering the role of carbonate ion concentration in calcification by marine organisms, Biogeosciences, 12, 4939–4951, https://doi.org/10.5194/bg-12-4939-2015, 2015. a, b
Bakker, D. C. E., Pfeil, B., Landa, C. S., Metzl, N., O'Brien, K. M., Olsen, A., Smith, K., Cosca, C., Harasawa, S., Jones, S. D., Nakaoka, S., Nojiri, Y., Schuster, U., Steinhoff, T., Sweeney, C., Takahashi, T., Tilbrook, B., Wada, C., Wanninkhof, R., Alin, S. R., Balestrini, C. F., Barbero, L., Bates, N. R., Bianchi, A. A., Bonou, F., Boutin, J., Bozec, Y., Burger, E. F., Cai, W.-J., Castle, R. D., Chen, L., Chierici, M., Currie, K., Evans, W., Featherstone, C., Feely, R. A., Fransson, A., Goyet, C., Greenwood, N., Gregor, L., Hankin, S., Hardman-Mountford, N. J., Harlay, J., Hauck, J., Hoppema, M., Humphreys, M. P., Hunt, C. W., Huss, B., Ibánhez, J. S. P., Johannessen, T., Keeling, R., Kitidis, V., Körtzinger, A., Kozyr, A., Krasakopoulou, E., Kuwata, A., Landschützer, P., Lauvset, S. K., Lefèvre, N., Lo Monaco, C., Manke, A., Mathis, J. T., Merlivat, L., Millero, F. J., Monteiro, P. M. S., Munro, D. R., Murata, A., Newberger, T., Omar, A. M., Ono, T., Paterson, K., Pearce, D., Pierrot, D., Robbins, L. L., Saito, S., Salisbury, J., Schlitzer, R., Schneider, B., Schweitzer, R., Sieger, R., Skjelvan, I., Sullivan, K. F., Sutherland, S. C., Sutton, A. J., Tadokoro, K., Telszewski, M., Tuma, M., van Heuven, S. M. A. C., Vandemark, D., Ward, B., Watson, A. J., and Xu, S.: A multi-decade record of high-quality fCO2 data in version 3 of the Surface Ocean CO2 Atlas (SOCAT), Earth Syst. Sci. Data, 8, 383–413, https://doi.org/10.5194/essd-8-383-2016, 2016. a
Bradbury, J., Frostig, R., Hawkins, P., Johnson, M. J., Leary, C., Maclaurin, D., and Wanderman-Milne, S.: JAX: composable transformations of Python+NumPy programs, GitHub, available at: http://github.com/google/jax (last access: 23 December 2021), 2018. a
Download
Short summary
The ocean helps to mitigate our impact on Earth's climate by absorbing about a quarter of the carbon dioxide (CO2) released by human activities each year. However, once absorbed, chemical reactions between CO2 and water reduce seawater pH (ocean acidification), which may have adverse effects on marine ecosystems. Our Python package, PyCO2SYS, models the chemical reactions of CO2 in seawater, allowing us to quantify the corresponding changes in pH and related chemical properties.
Share