Articles | Volume 15, issue 1
https://doi.org/10.5194/gmd-15-15-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-15-15-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
PyCO2SYS v1.8: marine carbonate system calculations in Python
Matthew P. Humphreys
CORRESPONDING AUTHOR
Department of Ocean Systems (OCS), NIOZ Royal Netherlands Institute for Sea Research, Texel, the Netherlands
Ernie R. Lewis
Environmental and Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, USA
Jonathan D. Sharp
Cooperative Institute for Climate, Ocean, and Ecosystem Studies, University of Washington, Seattle, WA, USA
Pacific Marine Environmental Laboratory, National Oceanic and Atmospheric Administration, Seattle, WA, USA
Denis Pierrot
Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, Miami, FL, USA
Viewed
Total article views: 8,406 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 08 Jun 2021)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
5,136 | 3,159 | 111 | 8,406 | 66 | 78 |
- HTML: 5,136
- PDF: 3,159
- XML: 111
- Total: 8,406
- BibTeX: 66
- EndNote: 78
Total article views: 5,408 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 04 Jan 2022)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
4,194 | 1,127 | 87 | 5,408 | 60 | 67 |
- HTML: 4,194
- PDF: 1,127
- XML: 87
- Total: 5,408
- BibTeX: 60
- EndNote: 67
Total article views: 2,998 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 08 Jun 2021)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
942 | 2,032 | 24 | 2,998 | 6 | 11 |
- HTML: 942
- PDF: 2,032
- XML: 24
- Total: 2,998
- BibTeX: 6
- EndNote: 11
Viewed (geographical distribution)
Total article views: 8,406 (including HTML, PDF, and XML)
Thereof 8,189 with geography defined
and 217 with unknown origin.
Total article views: 5,408 (including HTML, PDF, and XML)
Thereof 5,241 with geography defined
and 167 with unknown origin.
Total article views: 2,998 (including HTML, PDF, and XML)
Thereof 2,948 with geography defined
and 50 with unknown origin.
Country | # | Views | % |
---|
Country | # | Views | % |
---|
Country | # | Views | % |
---|
Total: | 0 |
HTML: | 0 |
PDF: | 0 |
XML: | 0 |
- 1
1
Total: | 0 |
HTML: | 0 |
PDF: | 0 |
XML: | 0 |
- 1
1
Total: | 0 |
HTML: | 0 |
PDF: | 0 |
XML: | 0 |
- 1
1
Cited
56 citations as recorded by crossref.
- Rates of Future Climate Change in the Gulf of Mexico and the Caribbean Sea: Implications for Coral Reef Ecosystems A. Lawman et al. 10.1029/2022JG006999
- OceanSODA-UNEXE: a multi-year gridded Amazon and Congo River outflow surface ocean carbonate system dataset R. Sims et al. 10.5194/essd-15-2499-2023
- Changes in DIC/TA ratio by tidal asymmetry control <i>p</i>CO<sub>2</sub> over a spring-neap tidal cycle in a subtropical mangrove forest in Japan W. Nakamura et al. 10.2343/geochemj.GJ24003
- Predicting Carbonate Chemistry on the Northwest Atlantic Shelf Using Neural Networks I. Lima et al. 10.1029/2023JG007536
- Assessing the influence of ocean alkalinity enhancement on a coastal phytoplankton community A. Ferderer et al. 10.5194/bg-19-5375-2022
- Differences between potassium and sodium incorporation in foraminiferal shell carbonate L. Pacho et al. 10.3389/fmars.2024.1385347
- Best Practice Data Standards for Discrete Chemical Oceanographic Observations L. Jiang et al. 10.3389/fmars.2021.705638
- Advancing best practices for assessing trends of ocean acidification time series A. Sutton et al. 10.3389/fmars.2022.1045667
- Reconstruction of the marine carbonate system at the Western Tropical Atlantic: trends and variabilities from 20 years of the PIRATA program C. Musetti de Assis et al. 10.3389/fmars.2024.1286960
- RADIv1: a non-steady-state early diagenetic model for ocean sediments in Julia and MATLAB/GNU Octave O. Sulpis et al. 10.5194/gmd-15-2105-2022
- Advancing real-time pH sensing capabilities to monitor coastal acidification as measured in a productive and dynamic estuary (Ría de Arousa, NW Spain) A. Velo & X. Padin 10.3389/fmars.2022.941359
- Droughts and deluges: changes in river discharge and the carbonate chemistry of an urbanized temperate estuary L. Barrett et al. 10.3389/fmars.2024.1398087
- Thallium toxicity to temperate and tropical marine organisms: Derivation of water quality guidelines to protect marine life S. Markich et al. 10.1016/j.marpolbul.2023.114964
- ESTIMATED PRECISION OF pCO<sub>2</sub> BASED ON CARBONATE CHEMISTRY IN BRACKISH WATERS W. NAKAMURA et al. 10.2208/kaigan.78.2_I_805
- Variability of Dissolved Inorganic Carbon in the Most Extensive Karst Estuarine-Lagoon System of the Southern Gulf of Mexico J. Martínez-Trejo et al. 10.1007/s12237-024-01384-1
- Enhance seasonal amplitude of atmospheric CO 2 by the changing Southern Ocean carbon sink J. Yun et al. 10.1126/sciadv.abq0220
- Quantifying Net Community Production and Calcification at Station ALOHA Near Hawai'i: Insights and Limitations From a Dual Tracer Carbon Budget Approach L. Knor et al. 10.1029/2022GB007672
- Influence of ocean alkalinity enhancement with olivine or steel slag on a coastal plankton community in Tasmania J. Guo et al. 10.5194/bg-21-2335-2024
- Hydrological cycle amplification imposes spatial patterns on the climate change response of ocean pH and carbonate chemistry A. Hogikyan & L. Resplandy 10.5194/bg-21-4621-2024
- A practical pCO2 estimation and carbonate dynamics at an event of hypoxic water upwelling in Tokyo Bay M. Endo et al. 10.3389/fmars.2022.1016199
- pCO2 decrement through alkalinity enhancement and biological production in a shallow-water ecosystem constructed using steelmaking slag W. Nakamura et al. 10.1016/j.marenvres.2023.106223
- Dissolution of a submarine carbonate platform by a submerged lake of acidic seawater M. Humphreys et al. 10.5194/bg-19-347-2022
- Respiration and CO2 evasion dynamics in moving streambeds as a response to flow regimes H. Schulz et al. 10.1016/j.jhydrol.2024.131559
- Moving Bedforms Control CO2 Production and Distribution in Sandy River Sediments H. Schulz et al. 10.1029/2022JG007156
- Element ∕ Ca ratios in Nodosariida (Foraminifera) and their potential application for paleoenvironmental reconstructions L. Pacho et al. 10.5194/bg-20-4043-2023
- The influence of tides on the marine carbonate chemistry of a coastal polynya in the south-eastern Weddell Sea E. Droste et al. 10.5194/os-18-1293-2022
- Air-sea CO2 flux in the Gulf of Mexico from observations and multiple machine-learning data products Z. Wu et al. 10.1016/j.pocean.2024.103244
- Current Trends of Analytical Techniques for Total Alkalinity Measurement in Water Samples: A Review M. Ahmad et al. 10.1080/10408347.2023.2199432
- More Than Marine Heatwaves: A New Regime of Heat, Acidity, and Low Oxygen Compound Extreme Events in the Gulf of Alaska C. Hauri et al. 10.1029/2023AV001039
- Impact of dissolved CO2 on calcification in two large, benthic foraminiferal species L. Dämmer et al. 10.1371/journal.pone.0289122
- Biocement from the ocean: Hybrid microbial-electrochemical mineralization of CO2 A. Kludze et al. 10.1016/j.isci.2022.105156
- Spatio-temporal dynamics of the carbonate system during macroalgae farming season in a semi-closed bay in southeast China Z. Zhang et al. 10.3389/fmars.2024.1375839
- What goes in must come out: the oceanic outgassing of anthropogenic carbon D. Couespel & J. Tjiputra 10.1088/1748-9326/ad16e0
- Sediment-water fluxes of inorganic carbon and nutrients in the Pacific Arctic during the sea ice melt season L. Barrett et al. 10.1016/j.csr.2023.105116
- Biological export production controls upper ocean calcium carbonate dissolution and CO 2 buffer capacity E. Kwon et al. 10.1126/sciadv.adl0779
- Temperature effect on seawater fCO2 revisited: theoretical basis, uncertainty analysis and implications for parameterising carbonic acid equilibrium constants M. Humphreys 10.5194/os-20-1325-2024
- Random and systematic uncertainty in ship‐based seawater carbonate chemistry observations B. Carter et al. 10.1002/lno.12674
- Boron isotope pH calibration of a shallow dwelling benthic nummulitid foraminifera D. Coenen et al. 10.1016/j.gca.2024.06.020
- French coastal network for carbonate system monitoring: the CocoriCO2 dataset S. Petton et al. 10.5194/essd-16-1667-2024
- Amplified Subsurface Signals of Ocean Acidification A. Fassbender et al. 10.1029/2023GB007843
- Mixing and dilution controls on marine CO2 removal using alkalinity enhancement T. Khangaonkar et al. 10.1088/1748-9326/ad7521
- A process-based geochemical framework for carbonate sediments during marine diagenesis M. Hashim et al. 10.1016/j.gca.2024.05.023
- Ocean carbon from space: Current status and priorities for the next decade R. Brewin et al. 10.1016/j.earscirev.2023.104386
- The effect of carbonic anhydrase on foraminiferal Mg/Ca S. De Goeyse et al. 10.7717/peerj.18458
- Total alkalinity measurement using an open‐source platform D. Sandborn et al. 10.1002/lom3.10549
- Ocean Biogeochemical Signatures of the North Pacific Blob S. Mogen et al. 10.1029/2021GL096938
- Autonomous in situ calibration of ion‐sensitive field effect transistor pH sensors P. Bresnahan et al. 10.1002/lom3.10410
- PyCO2SYS v1.8: marine carbonate system calculations in Python M. Humphreys et al. 10.5194/gmd-15-15-2022
- The additionality problem of ocean alkalinity enhancement L. Bach 10.5194/bg-21-261-2024
- Coincident Biogenic Nitrite and pH Maxima Arise in the Upper Anoxic Layer in the Eastern Tropical North Pacific T. Cinay et al. 10.1029/2022GB007470
- Trends and Projections in Climate‐Related Stressors Impacting Arctic Marine Ecosystems—A CMIP6 Model Analysis N. Steiner & C. Reader 10.1029/2024JC020970
- Four Decades of Trends and Drivers of Global Surface Ocean Acidification D. Ma et al. 10.1029/2023GB007765
- Multi-month forecasts of marine heatwaves and ocean acidification extremes S. Mogen et al. 10.1038/s41561-024-01593-0
- Explicit Physical Knowledge in Machine Learning for Ocean Carbon Flux Reconstruction: The pCO2‐Residual Method V. Bennington et al. 10.1029/2021MS002960
- Short-term responses to ocean acidification: effects on relative abundance of eukaryotic plankton from the tropical Timor Sea J. Rahlff et al. 10.3354/meps13561
- A model for marine sedimentary carbonate diagenesis and paleoclimate proxy signal tracking: IMP v1.0 Y. Kanzaki et al. 10.5194/gmd-14-5999-2021
44 citations as recorded by crossref.
- Rates of Future Climate Change in the Gulf of Mexico and the Caribbean Sea: Implications for Coral Reef Ecosystems A. Lawman et al. 10.1029/2022JG006999
- OceanSODA-UNEXE: a multi-year gridded Amazon and Congo River outflow surface ocean carbonate system dataset R. Sims et al. 10.5194/essd-15-2499-2023
- Changes in DIC/TA ratio by tidal asymmetry control <i>p</i>CO<sub>2</sub> over a spring-neap tidal cycle in a subtropical mangrove forest in Japan W. Nakamura et al. 10.2343/geochemj.GJ24003
- Predicting Carbonate Chemistry on the Northwest Atlantic Shelf Using Neural Networks I. Lima et al. 10.1029/2023JG007536
- Assessing the influence of ocean alkalinity enhancement on a coastal phytoplankton community A. Ferderer et al. 10.5194/bg-19-5375-2022
- Differences between potassium and sodium incorporation in foraminiferal shell carbonate L. Pacho et al. 10.3389/fmars.2024.1385347
- Best Practice Data Standards for Discrete Chemical Oceanographic Observations L. Jiang et al. 10.3389/fmars.2021.705638
- Advancing best practices for assessing trends of ocean acidification time series A. Sutton et al. 10.3389/fmars.2022.1045667
- Reconstruction of the marine carbonate system at the Western Tropical Atlantic: trends and variabilities from 20 years of the PIRATA program C. Musetti de Assis et al. 10.3389/fmars.2024.1286960
- RADIv1: a non-steady-state early diagenetic model for ocean sediments in Julia and MATLAB/GNU Octave O. Sulpis et al. 10.5194/gmd-15-2105-2022
- Advancing real-time pH sensing capabilities to monitor coastal acidification as measured in a productive and dynamic estuary (Ría de Arousa, NW Spain) A. Velo & X. Padin 10.3389/fmars.2022.941359
- Droughts and deluges: changes in river discharge and the carbonate chemistry of an urbanized temperate estuary L. Barrett et al. 10.3389/fmars.2024.1398087
- Thallium toxicity to temperate and tropical marine organisms: Derivation of water quality guidelines to protect marine life S. Markich et al. 10.1016/j.marpolbul.2023.114964
- ESTIMATED PRECISION OF pCO<sub>2</sub> BASED ON CARBONATE CHEMISTRY IN BRACKISH WATERS W. NAKAMURA et al. 10.2208/kaigan.78.2_I_805
- Variability of Dissolved Inorganic Carbon in the Most Extensive Karst Estuarine-Lagoon System of the Southern Gulf of Mexico J. Martínez-Trejo et al. 10.1007/s12237-024-01384-1
- Enhance seasonal amplitude of atmospheric CO 2 by the changing Southern Ocean carbon sink J. Yun et al. 10.1126/sciadv.abq0220
- Quantifying Net Community Production and Calcification at Station ALOHA Near Hawai'i: Insights and Limitations From a Dual Tracer Carbon Budget Approach L. Knor et al. 10.1029/2022GB007672
- Influence of ocean alkalinity enhancement with olivine or steel slag on a coastal plankton community in Tasmania J. Guo et al. 10.5194/bg-21-2335-2024
- Hydrological cycle amplification imposes spatial patterns on the climate change response of ocean pH and carbonate chemistry A. Hogikyan & L. Resplandy 10.5194/bg-21-4621-2024
- A practical pCO2 estimation and carbonate dynamics at an event of hypoxic water upwelling in Tokyo Bay M. Endo et al. 10.3389/fmars.2022.1016199
- pCO2 decrement through alkalinity enhancement and biological production in a shallow-water ecosystem constructed using steelmaking slag W. Nakamura et al. 10.1016/j.marenvres.2023.106223
- Dissolution of a submarine carbonate platform by a submerged lake of acidic seawater M. Humphreys et al. 10.5194/bg-19-347-2022
- Respiration and CO2 evasion dynamics in moving streambeds as a response to flow regimes H. Schulz et al. 10.1016/j.jhydrol.2024.131559
- Moving Bedforms Control CO2 Production and Distribution in Sandy River Sediments H. Schulz et al. 10.1029/2022JG007156
- Element ∕ Ca ratios in Nodosariida (Foraminifera) and their potential application for paleoenvironmental reconstructions L. Pacho et al. 10.5194/bg-20-4043-2023
- The influence of tides on the marine carbonate chemistry of a coastal polynya in the south-eastern Weddell Sea E. Droste et al. 10.5194/os-18-1293-2022
- Air-sea CO2 flux in the Gulf of Mexico from observations and multiple machine-learning data products Z. Wu et al. 10.1016/j.pocean.2024.103244
- Current Trends of Analytical Techniques for Total Alkalinity Measurement in Water Samples: A Review M. Ahmad et al. 10.1080/10408347.2023.2199432
- More Than Marine Heatwaves: A New Regime of Heat, Acidity, and Low Oxygen Compound Extreme Events in the Gulf of Alaska C. Hauri et al. 10.1029/2023AV001039
- Impact of dissolved CO2 on calcification in two large, benthic foraminiferal species L. Dämmer et al. 10.1371/journal.pone.0289122
- Biocement from the ocean: Hybrid microbial-electrochemical mineralization of CO2 A. Kludze et al. 10.1016/j.isci.2022.105156
- Spatio-temporal dynamics of the carbonate system during macroalgae farming season in a semi-closed bay in southeast China Z. Zhang et al. 10.3389/fmars.2024.1375839
- What goes in must come out: the oceanic outgassing of anthropogenic carbon D. Couespel & J. Tjiputra 10.1088/1748-9326/ad16e0
- Sediment-water fluxes of inorganic carbon and nutrients in the Pacific Arctic during the sea ice melt season L. Barrett et al. 10.1016/j.csr.2023.105116
- Biological export production controls upper ocean calcium carbonate dissolution and CO 2 buffer capacity E. Kwon et al. 10.1126/sciadv.adl0779
- Temperature effect on seawater fCO2 revisited: theoretical basis, uncertainty analysis and implications for parameterising carbonic acid equilibrium constants M. Humphreys 10.5194/os-20-1325-2024
- Random and systematic uncertainty in ship‐based seawater carbonate chemistry observations B. Carter et al. 10.1002/lno.12674
- Boron isotope pH calibration of a shallow dwelling benthic nummulitid foraminifera D. Coenen et al. 10.1016/j.gca.2024.06.020
- French coastal network for carbonate system monitoring: the CocoriCO2 dataset S. Petton et al. 10.5194/essd-16-1667-2024
- Amplified Subsurface Signals of Ocean Acidification A. Fassbender et al. 10.1029/2023GB007843
- Mixing and dilution controls on marine CO2 removal using alkalinity enhancement T. Khangaonkar et al. 10.1088/1748-9326/ad7521
- A process-based geochemical framework for carbonate sediments during marine diagenesis M. Hashim et al. 10.1016/j.gca.2024.05.023
- Ocean carbon from space: Current status and priorities for the next decade R. Brewin et al. 10.1016/j.earscirev.2023.104386
- The effect of carbonic anhydrase on foraminiferal Mg/Ca S. De Goeyse et al. 10.7717/peerj.18458
12 citations as recorded by crossref.
- Total alkalinity measurement using an open‐source platform D. Sandborn et al. 10.1002/lom3.10549
- Ocean Biogeochemical Signatures of the North Pacific Blob S. Mogen et al. 10.1029/2021GL096938
- Autonomous in situ calibration of ion‐sensitive field effect transistor pH sensors P. Bresnahan et al. 10.1002/lom3.10410
- PyCO2SYS v1.8: marine carbonate system calculations in Python M. Humphreys et al. 10.5194/gmd-15-15-2022
- The additionality problem of ocean alkalinity enhancement L. Bach 10.5194/bg-21-261-2024
- Coincident Biogenic Nitrite and pH Maxima Arise in the Upper Anoxic Layer in the Eastern Tropical North Pacific T. Cinay et al. 10.1029/2022GB007470
- Trends and Projections in Climate‐Related Stressors Impacting Arctic Marine Ecosystems—A CMIP6 Model Analysis N. Steiner & C. Reader 10.1029/2024JC020970
- Four Decades of Trends and Drivers of Global Surface Ocean Acidification D. Ma et al. 10.1029/2023GB007765
- Multi-month forecasts of marine heatwaves and ocean acidification extremes S. Mogen et al. 10.1038/s41561-024-01593-0
- Explicit Physical Knowledge in Machine Learning for Ocean Carbon Flux Reconstruction: The pCO2‐Residual Method V. Bennington et al. 10.1029/2021MS002960
- Short-term responses to ocean acidification: effects on relative abundance of eukaryotic plankton from the tropical Timor Sea J. Rahlff et al. 10.3354/meps13561
- A model for marine sedimentary carbonate diagenesis and paleoclimate proxy signal tracking: IMP v1.0 Y. Kanzaki et al. 10.5194/gmd-14-5999-2021
Latest update: 13 Dec 2024
Short summary
The ocean helps to mitigate our impact on Earth's climate by absorbing about a quarter of the carbon dioxide (CO2) released by human activities each year. However, once absorbed, chemical reactions between CO2 and water reduce seawater pH (
ocean acidification), which may have adverse effects on marine ecosystems. Our Python package, PyCO2SYS, models the chemical reactions of CO2 in seawater, allowing us to quantify the corresponding changes in pH and related chemical properties.
The ocean helps to mitigate our impact on Earth's climate by absorbing about a quarter of the...