Articles | Volume 10, issue 4
https://doi.org/10.5194/gmd-10-1423-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-10-1423-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper
| 
05 Apr 2017
Model description paper |
| 05 Apr 2017
Development of BFMCOUPLER (v1.0), the coupling scheme that links the MITgcm and BFM models for ocean biogeochemistry simulations
Department of Oceanography, Istituto Nazionale di Oceanografia e di
Geofisica Sperimentale – OGS, Sgonico (TS), 34010, Italy
Stefano Querin
Department of Oceanography, Istituto Nazionale di Oceanografia e di
Geofisica Sperimentale – OGS, Sgonico (TS), 34010, Italy
Cosimo Solidoro
Department of Oceanography, Istituto Nazionale di Oceanografia e di
Geofisica Sperimentale – OGS, Sgonico (TS), 34010, Italy
Gianmaria Sannino
Climate Modelling Laboratory, Italian National Agency for New Technologies, Energy and Sustainable Economic Development, Rome, Italy
Paolo Lazzari
Department of Oceanography, Istituto Nazionale di Oceanografia e di
Geofisica Sperimentale – OGS, Sgonico (TS), 34010, Italy
Valeria Di Biagio
Department of Oceanography, Istituto Nazionale di Oceanografia e di
Geofisica Sperimentale – OGS, Sgonico (TS), 34010, Italy
Giorgio Bolzon
Department of Oceanography, Istituto Nazionale di Oceanografia e di
Geofisica Sperimentale – OGS, Sgonico (TS), 34010, Italy
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Monitoring the ocean is essential for studying marine life and human impact. Our new software, PPCon, uses ocean data to predict key factors like nitrate and chlorophyll levels, which are hard to measure directly. By leveraging machine learning, PPCon offers more accurate and efficient predictions.
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A noticeable cold spell occurred in Eastern Europe at the beginning of 2022 and was the main driver of intense deep-water formation and the associated transport of nutrients to the surface. Southeast of Crete, the availability of both light and nutrients in the surface layer stimulated an anomalous phytoplankton bloom. In the area, chlorophyll concentration (a proxy for bloom intensity) and primary production were considerably higher than usual, suggesting possible impacts on fishery catches.
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Marine biogeochemistry refers to the cycling of chemical elements resulting from physical transport, chemical reaction, uptake, and processing by living organisms. Biogeochemical models can have a wide range of complexity, from single parameterizations of processes to fully explicit representations of several nutrients, trophic levels, and functional groups. Uncertainty sources are the lack of knowledge about the parameterizations, initial and boundary conditions and the lack of observations
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Oxygen is essential to all aerobic organisms, and its content in the marine environment is continuously under assessment. By integrating observations with a model, we describe the dissolved oxygen variability in a sensitive Mediterranean area in the period 1999–2021 and ascribe it to multiple acting physical and biological drivers. Moreover, the reduction recognized in 2021, apparently also due to other mechanisms, requires further monitoring in light of its possible impacts.
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During summer, maxima of phytoplankton chlorophyll concentration (DCM) occur in the subsurface of the Mediterranean Sea and can play a relevant role in carbon sequestration into the ocean interior. A numerical model based on in situ and satellite observations provides insights into the range of DCM conditions across the relatively small Mediterranean Sea and shows a western DCM that is 25 % shallower and with a higher phytoplankton chlorophyll concentration than in the eastern Mediterranean.
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Stefano Salon, Gianpiero Cossarini, Giorgio Bolzon, Laura Feudale, Paolo Lazzari, Anna Teruzzi, Cosimo Solidoro, and Alessandro Crise
Ocean Sci., 15, 997–1022, https://doi.org/10.5194/os-15-997-2019, https://doi.org/10.5194/os-15-997-2019, 2019
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After 10 years of research and development, validated analysis and forecasts of the main parameters of the Mediterranean Sea biogeochemistry (e.g. phytoplankton, nutrients, oxygen, pH, carbon fluxes) at high spatial and temporal resolution are provided in the frame of the EU Copernicus Marine Environment Monitoring Service. Along with a traditional skill performance assessment, novel metrics exploiting the Biogeochemical Argo floats data are designed to estimate the forecasts uncertainty.
G. Cossarini, P. Lazzari, and C. Solidoro
Biogeosciences, 12, 1647–1658, https://doi.org/10.5194/bg-12-1647-2015, https://doi.org/10.5194/bg-12-1647-2015, 2015
Carlos Enmanuel Soto López, Fabio Anselmi, Mirna Gharbi Dit Kacem, and Paolo Lazzari
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-174, https://doi.org/10.5194/gmd-2024-174, 2024
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Our goal was to use an analytical expression to estimate the density of optical constituents, allowing us to have an interpretable formulation consistent with the laws of physics. We focused on a probabilistic approach, optimizing the model and retrieving quantities with their respective uncertainty. Considering future application to Big Data, we also explored a Neural Network based method, retrieving computationally efficient estimates, maintaining consistency with the analytical expression.
Gloria Pietropolli, Luca Manzoni, and Gianpiero Cossarini
Geosci. Model Dev., 17, 7347–7364, https://doi.org/10.5194/gmd-17-7347-2024, https://doi.org/10.5194/gmd-17-7347-2024, 2024
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Monitoring the ocean is essential for studying marine life and human impact. Our new software, PPCon, uses ocean data to predict key factors like nitrate and chlorophyll levels, which are hard to measure directly. By leveraging machine learning, PPCon offers more accurate and efficient predictions.
Anna Teruzzi, Ali Aydogdu, Carolina Amadio, Emanuela Clementi, Simone Colella, Valeria Di Biagio, Massimiliano Drudi, Claudia Fanelli, Laura Feudale, Alessandro Grandi, Pietro Miraglio, Andrea Pisano, Jenny Pistoia, Marco Reale, Stefano Salon, Gianluca Volpe, and Gianpiero Cossarini
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A noticeable cold spell occurred in Eastern Europe at the beginning of 2022 and was the main driver of intense deep-water formation and the associated transport of nutrients to the surface. Southeast of Crete, the availability of both light and nutrients in the surface layer stimulated an anomalous phytoplankton bloom. In the area, chlorophyll concentration (a proxy for bloom intensity) and primary production were considerably higher than usual, suggesting possible impacts on fishery catches.
Karina von Schuckmann, Lorena Moreira, Mathilde Cancet, Flora Gues, Emmanuelle Autret, Ali Aydogdu, Lluis Castrillo, Daniele Ciani, Andrea Cipollone, Emanuela Clementi, Gianpiero Cossarini, Alvaro de Pascual-Collar, Vincenzo De Toma, Marion Gehlen, Rianne Giesen, Marie Drevillon, Claudia Fanelli, Kevin Hodges, Simon Jandt-Scheelke, Eric Jansen, Melanie Juza, Ioanna Karagali, Priidik Lagemaa, Vidar Lien, Leonardo Lima, Vladyslav Lyubartsev, Ilja Maljutenko, Simona Masina, Ronan McAdam, Pietro Miraglio, Helen Morrison, Tabea Rebekka Panteleit, Andrea Pisano, Marie-Isabelle Pujol, Urmas Raudsepp, Roshin Raj, Ad Stoffelen, Simon Van Gennip, Pierre Veillard, and Chunxue Yang
State Planet, 4-osr8, 2, https://doi.org/10.5194/sp-4-osr8-2-2024, https://doi.org/10.5194/sp-4-osr8-2-2024, 2024
Marco Chericoni, Giorgia Fosser, Emmanouil Flaounas, Gianmaria Sannino, and Alessandro Anav
EGUsphere, https://doi.org/10.5194/egusphere-2024-2829, https://doi.org/10.5194/egusphere-2024-2829, 2024
Short summary
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This study explores how sea surface energy influences both the atmosphere and ocean at various vertical levels during extreme Mediterranean cyclones. It focuses on cyclones' precipitation and wind speed response, as well as on ocean temperature variation. The analysis shows the effectiveness of the Regional Coupled Model in coherently representing the thermodynamic processes associated with extreme cyclones across both the atmosphere and the ocean.
Gianpiero Cossarini, Andy Moore, Stefano Ciavatta, and Katja Fennel
State Planet Discuss., https://doi.org/10.5194/sp-2024-8, https://doi.org/10.5194/sp-2024-8, 2024
Revised manuscript accepted for SP
Short summary
Short summary
Marine biogeochemistry refers to the cycling of chemical elements resulting from physical transport, chemical reaction, uptake, and processing by living organisms. Biogeochemical models can have a wide range of complexity, from single parameterizations of processes to fully explicit representations of several nutrients, trophic levels, and functional groups. Uncertainty sources are the lack of knowledge about the parameterizations, initial and boundary conditions and the lack of observations
Carolina Amadio, Anna Teruzzi, Gloria Pietropolli, Luca Manzoni, Gianluca Coidessa, and Gianpiero Cossarini
Ocean Sci., 20, 689–710, https://doi.org/10.5194/os-20-689-2024, https://doi.org/10.5194/os-20-689-2024, 2024
Short summary
Short summary
Forecasting of marine biogeochemistry can be improved via the assimilation of observations. Floating buoys provide multivariate information about the status of the ocean interior. Information on the ocean interior can be expanded/augmented by machine learning. In this work, we show the enhanced impact of assimilating new in situ variables (oxygen) and reconstructed variables (nitrate) in the operational forecast system (MedBFM) model of the Mediterranean Sea.
Eva Álvarez, Gianpiero Cossarini, Anna Teruzzi, Jorn Bruggeman, Karsten Bolding, Stefano Ciavatta, Vincenzo Vellucci, Fabrizio D'Ortenzio, David Antoine, and Paolo Lazzari
Biogeosciences, 20, 4591–4624, https://doi.org/10.5194/bg-20-4591-2023, https://doi.org/10.5194/bg-20-4591-2023, 2023
Short summary
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Chromophoric dissolved organic matter (CDOM) interacts with the ambient light and gives the waters of the Mediterranean Sea their colour. We propose a novel parameterization of the CDOM cycle, whose parameter values have been optimized by using the data of the monitoring site BOUSSOLE. Nutrient and light limitations for locally produced CDOM caused aCDOM(λ) to covary with chlorophyll, while the above-average CDOM concentrations observed at this site were maintained by allochthonous sources.
Simone Spada, Anna Teruzzi, Stefano Maset, Stefano Salon, Cosimo Solidoro, and Gianpiero Cossarini
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-170, https://doi.org/10.5194/gmd-2023-170, 2023
Revised manuscript under review for GMD
Short summary
Short summary
In geosciences, data assimilation (DA) combines modeled dynamics and observations to reduce simulation uncertainties. Uncertainties can be dynamically and effectively estimated in ensemble DA methods. With respect to current techniques, the novel GHOSH ensemble DA scheme is designed to improve accuracy by reaching a higher approximation order, without increasing computational costs, as demonstrated in idealized Lorenz96 tests and in realistic simulations of the Mediterranean Sea biogeochemistry
Giovanni Coppini, Emanuela Clementi, Gianpiero Cossarini, Stefano Salon, Gerasimos Korres, Michalis Ravdas, Rita Lecci, Jenny Pistoia, Anna Chiara Goglio, Massimiliano Drudi, Alessandro Grandi, Ali Aydogdu, Romain Escudier, Andrea Cipollone, Vladyslav Lyubartsev, Antonio Mariani, Sergio Cretì, Francesco Palermo, Matteo Scuro, Simona Masina, Nadia Pinardi, Antonio Navarra, Damiano Delrosso, Anna Teruzzi, Valeria Di Biagio, Giorgio Bolzon, Laura Feudale, Gianluca Coidessa, Carolina Amadio, Alberto Brosich, Arnau Miró, Eva Alvarez, Paolo Lazzari, Cosimo Solidoro, Charikleia Oikonomou, and Anna Zacharioudaki
Ocean Sci., 19, 1483–1516, https://doi.org/10.5194/os-19-1483-2023, https://doi.org/10.5194/os-19-1483-2023, 2023
Short summary
Short summary
The paper presents the Mediterranean Forecasting System evolution and performance developed in the framework of the Copernicus Marine Service.
Valeria Di Biagio, Riccardo Martellucci, Milena Menna, Anna Teruzzi, Carolina Amadio, Elena Mauri, and Gianpiero Cossarini
State Planet, 1-osr7, 10, https://doi.org/10.5194/sp-1-osr7-10-2023, https://doi.org/10.5194/sp-1-osr7-10-2023, 2023
Short summary
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Oxygen is essential to all aerobic organisms, and its content in the marine environment is continuously under assessment. By integrating observations with a model, we describe the dissolved oxygen variability in a sensitive Mediterranean area in the period 1999–2021 and ascribe it to multiple acting physical and biological drivers. Moreover, the reduction recognized in 2021, apparently also due to other mechanisms, requires further monitoring in light of its possible impacts.
Stefania A. Ciliberti, Enrique Alvarez Fanjul, Jay Pearlman, Kirsten Wilmer-Becker, Pierre Bahurel, Fabrice Ardhuin, Alain Arnaud, Mike Bell, Segolene Berthou, Laurent Bertino, Arthur Capet, Eric Chassignet, Stefano Ciavatta, Mauro Cirano, Emanuela Clementi, Gianpiero Cossarini, Gianpaolo Coro, Stuart Corney, Fraser Davidson, Marie Drevillon, Yann Drillet, Renaud Dussurget, Ghada El Serafy, Katja Fennel, Marcos Garcia Sotillo, Patrick Heimbach, Fabrice Hernandez, Patrick Hogan, Ibrahim Hoteit, Sudheer Joseph, Simon Josey, Pierre-Yves Le Traon, Simone Libralato, Marco Mancini, Pascal Matte, Angelique Melet, Yasumasa Miyazawa, Andrew M. Moore, Antonio Novellino, Andrew Porter, Heather Regan, Laia Romero, Andreas Schiller, John Siddorn, Joanna Staneva, Cecile Thomas-Courcoux, Marina Tonani, Jose Maria Garcia-Valdecasas, Jennifer Veitch, Karina von Schuckmann, Liying Wan, John Wilkin, and Romane Zufic
State Planet, 1-osr7, 2, https://doi.org/10.5194/sp-1-osr7-2-2023, https://doi.org/10.5194/sp-1-osr7-2-2023, 2023
Andrea Storto, Yassmin Hesham Essa, Vincenzo de Toma, Alessandro Anav, Gianmaria Sannino, Rosalia Santoleri, and Chunxue Yang
Geosci. Model Dev., 16, 4811–4833, https://doi.org/10.5194/gmd-16-4811-2023, https://doi.org/10.5194/gmd-16-4811-2023, 2023
Short summary
Short summary
Regional climate models are a fundamental tool for a very large number of applications and are being increasingly used within climate services, together with other complementary approaches. Here, we introduce a new regional coupled model, intended to be later extended to a full Earth system model, for climate investigations within the Mediterranean region, coupled data assimilation experiments, and several downscaling exercises (reanalyses and long-range predictions).
Alexandre Mignot, Hervé Claustre, Gianpiero Cossarini, Fabrizio D'Ortenzio, Elodie Gutknecht, Julien Lamouroux, Paolo Lazzari, Coralie Perruche, Stefano Salon, Raphaëlle Sauzède, Vincent Taillandier, and Anna Teruzzi
Biogeosciences, 20, 1405–1422, https://doi.org/10.5194/bg-20-1405-2023, https://doi.org/10.5194/bg-20-1405-2023, 2023
Short summary
Short summary
Numerical models of ocean biogeochemistry are becoming a major tool to detect and predict the impact of climate change on marine resources and monitor ocean health. Here, we demonstrate the use of the global array of BGC-Argo floats for the assessment of biogeochemical models. We first detail the handling of the BGC-Argo data set for model assessment purposes. We then present 23 assessment metrics to quantify the consistency of BGC model simulations with respect to BGC-Argo data.
Valeria Di Biagio, Stefano Salon, Laura Feudale, and Gianpiero Cossarini
Biogeosciences, 19, 5553–5574, https://doi.org/10.5194/bg-19-5553-2022, https://doi.org/10.5194/bg-19-5553-2022, 2022
Short summary
Short summary
The amount of dissolved oxygen in the ocean is the result of interacting physical and biological processes. Oxygen vertical profiles show a subsurface maximum in a large part of the ocean. We used a numerical model to map this subsurface maximum in the Mediterranean Sea and to link local differences in its properties to the driving processes. This emerging feature can help the marine ecosystem functioning to be better understood, also under the impacts of climate change.
Marco Reale, Gianpiero Cossarini, Paolo Lazzari, Tomas Lovato, Giorgio Bolzon, Simona Masina, Cosimo Solidoro, and Stefano Salon
Biogeosciences, 19, 4035–4065, https://doi.org/10.5194/bg-19-4035-2022, https://doi.org/10.5194/bg-19-4035-2022, 2022
Short summary
Short summary
Future projections under the RCP8.5 and RCP4.5 emission scenarios of the Mediterranean Sea biogeochemistry at the end of the 21st century show different levels of decline in nutrients, oxygen and biomasses and an acidification of the water column. The signal intensity is stronger under RCP8.5 and in the eastern Mediterranean. Under RCP4.5, after the second half of the 21st century, biogeochemical variables show a recovery of the values observed at the beginning of the investigated period.
Ginevra Rosati, Donata Canu, Paolo Lazzari, and Cosimo Solidoro
Biogeosciences, 19, 3663–3682, https://doi.org/10.5194/bg-19-3663-2022, https://doi.org/10.5194/bg-19-3663-2022, 2022
Short summary
Short summary
Methylmercury (MeHg) is produced and bioaccumulated in marine food webs, posing concerns for human exposure through seafood consumption. We modeled and analyzed the fate of MeHg in the lower food web of the Mediterranean Sea. The modeled spatial–temporal distribution of plankton bioaccumulation differs from the distribution of MeHg in surface water. We also show that MeHg exposure concentrations in temperate waters can be lowered by winter convection, which is declining due to climate change.
Anna Teruzzi, Giorgio Bolzon, Laura Feudale, and Gianpiero Cossarini
Biogeosciences, 18, 6147–6166, https://doi.org/10.5194/bg-18-6147-2021, https://doi.org/10.5194/bg-18-6147-2021, 2021
Short summary
Short summary
During summer, maxima of phytoplankton chlorophyll concentration (DCM) occur in the subsurface of the Mediterranean Sea and can play a relevant role in carbon sequestration into the ocean interior. A numerical model based on in situ and satellite observations provides insights into the range of DCM conditions across the relatively small Mediterranean Sea and shows a western DCM that is 25 % shallower and with a higher phytoplankton chlorophyll concentration than in the eastern Mediterranean.
Davide Zanchettin, Sara Bruni, Fabio Raicich, Piero Lionello, Fanny Adloff, Alexey Androsov, Fabrizio Antonioli, Vincenzo Artale, Eugenio Carminati, Christian Ferrarin, Vera Fofonova, Robert J. Nicholls, Sara Rubinetti, Angelo Rubino, Gianmaria Sannino, Giorgio Spada, Rémi Thiéblemont, Michael Tsimplis, Georg Umgiesser, Stefano Vignudelli, Guy Wöppelmann, and Susanna Zerbini
Nat. Hazards Earth Syst. Sci., 21, 2643–2678, https://doi.org/10.5194/nhess-21-2643-2021, https://doi.org/10.5194/nhess-21-2643-2021, 2021
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Relative sea level in Venice rose by about 2.5 mm/year in the past 150 years due to the combined effect of subsidence and mean sea-level rise. We estimate the likely range of mean sea-level rise in Venice by 2100 due to climate changes to be between about 10 and 110 cm, with an improbable yet possible high-end scenario of about 170 cm. Projections of subsidence are not available, but historical evidence demonstrates that they can increase the hazard posed by climatically induced sea-level rise.
Alessandro Anav, Adriana Carillo, Massimiliano Palma, Maria Vittoria Struglia, Ufuk Utku Turuncoglu, and Gianmaria Sannino
Geosci. Model Dev., 14, 4159–4185, https://doi.org/10.5194/gmd-14-4159-2021, https://doi.org/10.5194/gmd-14-4159-2021, 2021
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The Mediterranean Basin is a complex region, characterized by the presence of pronounced topography and a complex land–sea distribution including a considerable number of islands and straits; these features generate strong local atmosphere–sea interactions.
Regional Earth system models have been developed and used to study both present and future Mediterranean climate systems. The main aims of this paper are to present and evaluate the newly developed regional Earth system model ENEA-REG.
Paolo Lazzari, Stefano Salon, Elena Terzić, Watson W. Gregg, Fabrizio D'Ortenzio, Vincenzo Vellucci, Emanuele Organelli, and David Antoine
Ocean Sci., 17, 675–697, https://doi.org/10.5194/os-17-675-2021, https://doi.org/10.5194/os-17-675-2021, 2021
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Multispectral optical sensors and models are increasingly adopted to study marine systems. In this work, bio-optical mooring and biogeochemical Argo float optical observations are combined with the Ocean-Atmosphere Spectral Irradiance Model (OASIM) to analyse the variability of sunlight at the sea surface. We show that the model skill in simulating data varies according to the wavelength of light and temporal scale considered and that it is significantly affected by cloud dynamics.
Elena Terzić, Arnau Miró, Paolo Lazzari, Emanuele Organelli, and Fabrizio D'Ortenzio
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-473, https://doi.org/10.5194/bg-2020-473, 2021
Preprint withdrawn
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This study integrates numerical simulations (using a multi-spectral optical model) with in-situ measurements of floats and remotely sensed observations from satellites. It aims at improving our current understanding of the impact that different constituents (such as pure water, colored dissolved organic matter, detritus and phytoplankton) have on the in-water light propagation.
Valeria Di Biagio, Gianpiero Cossarini, Stefano Salon, and Cosimo Solidoro
Biogeosciences, 17, 5967–5988, https://doi.org/10.5194/bg-17-5967-2020, https://doi.org/10.5194/bg-17-5967-2020, 2020
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Events that influence the functioning of the Earth’s ecosystems are of interest in relation to a changing climate. We propose a method to identify and characterise
wavesof extreme events affecting marine ecosystems for multi-week periods over wide areas. Our method can be applied to suitable ecosystem variables and has been used to describe different kinds of extreme event waves of phytoplankton chlorophyll in the Mediterranean Sea, by analysing the output from a high-resolution model.
Stefano Salon, Gianpiero Cossarini, Giorgio Bolzon, Laura Feudale, Paolo Lazzari, Anna Teruzzi, Cosimo Solidoro, and Alessandro Crise
Ocean Sci., 15, 997–1022, https://doi.org/10.5194/os-15-997-2019, https://doi.org/10.5194/os-15-997-2019, 2019
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After 10 years of research and development, validated analysis and forecasts of the main parameters of the Mediterranean Sea biogeochemistry (e.g. phytoplankton, nutrients, oxygen, pH, carbon fluxes) at high spatial and temporal resolution are provided in the frame of the EU Copernicus Marine Environment Monitoring Service. Along with a traditional skill performance assessment, novel metrics exploiting the Biogeochemical Argo floats data are designed to estimate the forecasts uncertainty.
Elena Terzić, Paolo Lazzari, Emanuele Organelli, Cosimo Solidoro, Stefano Salon, Fabrizio D'Ortenzio, and Pascal Conan
Biogeosciences, 16, 2527–2542, https://doi.org/10.5194/bg-16-2527-2019, https://doi.org/10.5194/bg-16-2527-2019, 2019
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Measuring ecosystem properties in the ocean is a hard business. Recent availability of data from Biogeochemical-Argo floats can help make this task easier. Numerical models can integrate these new data in a coherent picture and can be used to investigate the functioning of ecosystem processes. Our new approach merges experimental information and model capabilities to quantitatively demonstrate the importance of light and water vertical mixing for algae dynamics in the Mediterranean Sea.
Winfried Hoke, Tina Swierczynski, Peter Braesicke, Karin Lochte, Len Shaffrey, Martin Drews, Hilppa Gregow, Ralf Ludwig, Jan Even Øie Nilsen, Elisa Palazzi, Gianmaria Sannino, Lars Henrik Smedsrud, and ECRA network
Adv. Geosci., 46, 1–10, https://doi.org/10.5194/adgeo-46-1-2019, https://doi.org/10.5194/adgeo-46-1-2019, 2019
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The European Climate Research Alliance is a bottom-up association of European research institutions helping to facilitate the development of climate change research, combining the capacities of national research institutions and inducing closer ties between existing national research initiatives, projects and infrastructures. This article briefly introduces the network's structure and organisation, as well as project management issues and prospects.
Antonio Sanchez-Roman, Gabriel Jorda, Gianmaria Sannino, and Damia Gomis
Ocean Sci., 14, 1547–1566, https://doi.org/10.5194/os-14-1547-2018, https://doi.org/10.5194/os-14-1547-2018, 2018
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We explore the vertical transfers of heat, salt and mass between the inflowing and outflowing layers at the Strait of Gibraltar by using a 3-D model with very high spatial resolution that allows for a realistic representation of the exchange. Results show a significant transformation of the water mass properties along their path through the strait, mainly induced by the recirculation of water between layers, while mixing seems to have little influence on the heat and salt exchanged.
W. J. McKiver, G. Sannino, F. Braga, and D. Bellafiore
Ocean Sci., 12, 51–69, https://doi.org/10.5194/os-12-51-2016, https://doi.org/10.5194/os-12-51-2016, 2016
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First modeling work comparing SHYFEM and MITgcm performance in the north Adriatic Sea; the treatment of heat/mass fluxes at the surface affects the models skill to reproduce coastal processes; high resolution is needed close to the coast, while lower resolution in the offshore is adequate to capture the dense water event; correct river discharges and temperature are vital for the reproduction of estuarine dynamics; non-hydrostatic processes do not influence the dense water formation.
E. Akoglu, S. Libralato, B. Salihoglu, T. Oguz, and C. Solidoro
Geosci. Model Dev., 8, 2687–2699, https://doi.org/10.5194/gmd-8-2687-2015, https://doi.org/10.5194/gmd-8-2687-2015, 2015
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Ecosystem-based marine management requires coupling/integrating multiple models in one unified scheme. The widely adopted Ecopath with Ecosim (EwE) is potentially a crucial high trophic level component of such schemes. However, being written in Visual Basic, integration of EwE with physical and/or biogeochemical oceanographic models, which were mostly written in Fortran, is complicated. We release a re-coding of EwE in Fortran (EwE-F) so as to facilitate its coupling/integration in such schemes.
G. Cossarini, P. Lazzari, and C. Solidoro
Biogeosciences, 12, 1647–1658, https://doi.org/10.5194/bg-12-1647-2015, https://doi.org/10.5194/bg-12-1647-2015, 2015
Related subject area
Oceanography
sedInterFoam 1.0: a three-phase numerical model for sediment transport applications with free surfaces
The Ross Sea and Amundsen Sea Ice–Sea Model (RAISE v1.0): a high-resolution ocean–sea ice–ice shelf coupling model for simulating the Dense Shelf Water and Antarctic Bottom Water in the Ross Sea, Antarctica
Sensitivity of the tropical Atlantic to vertical mixing in two ocean models (ICON-O v2.6.6 and FESOM v2.5)
HIDRA3: a deep-learning model for multipoint ensemble sea level forecasting in the presence of tide gauge sensor failures
A wave-resolving two-dimensional vertical Lagrangian approach to model microplastic transport in nearshore waters based on TrackMPD 3.0
HOTSSea v1: a NEMO-based physical Hindcast of the Salish Sea (1980–2018) supporting ecosystem model development
DalROMS-NWA12 v1.0, a coupled circulation–ice–biogeochemistry modelling system for the northwest Atlantic Ocean: development and validation
A revised ocean mixed layer model for better simulating the diurnal variation in ocean skin temperature
Evaluating an accelerated forcing approach for improving computational efficiency in coupled ice sheet–ocean modelling
An optimal transformation method for inferring ocean tracer sources and sinks
PPCon 1.0: Biogeochemical-Argo profile prediction with 1D convolutional networks
Updates to the Met Office’s global ocean-sea ice forecasting system including model and data assimilation changes
A new global high resolution wave model for the tropical ocean
Using automatic calibration to improve the physics behind complex numerical models: An example from a 3D lake model using Delft3d (v6.02.10) and DYNO-PODS (v1.0)
Experimental design for the Marine Ice Sheet–Ocean Model Intercomparison Project – phase 2 (MISOMIP2)
Development of a total variation diminishing (TVD) sea ice transport scheme and its application in an ocean (SCHISM v5.11) and sea ice (Icepack v1.3.4) coupled model on unstructured grids
Spurious numerical mixing under strong tidal forcing: a case study in the south-east Asian seas using the Symphonie model (v3.1.2)
Modelling the water isotope distribution in the Mediterranean Sea using a high-resolution oceanic model (NEMO-MED12-watiso v1.0): evaluation of model results against in situ observations
LIGHT-bgcArgo-1.0: using synthetic float capabilities in E3SMv2 to assess spatiotemporal variability in ocean physics and biogeochemistry
GREAT v1.0: Global Real-time Early Assessment of Tsunamis
Towards a real-time modeling of global ocean waves by the fully GPU-accelerated spectral wave model WAM6-GPU v1.0
A simple approach to represent precipitation-derived freshwater fluxes into nearshore ocean models: an FVCOM4.1 case study of Quatsino Sound, British Columbia
An optimal transformation method applied to diagnose the ocean carbon budget
Implementation and assessment of a model including mixotrophs and the carbonate cycle (Eco3M_MIX-CarbOx v1.0) in a highly dynamic Mediterranean coastal environment (Bay of Marseille, France) – Part 2: Towards a better representation of total alkalinity when modeling the carbonate system and air–sea CO2 fluxes
Development of a novel storm surge inundation model framework for efficient prediction
Skin sea surface temperature schemes in coupled ocean–atmosphere modelling: the impact of chlorophyll-interactive e-folding depth
Resolution dependence of interlinked Southern Ocean biases in global coupled HadGEM3 models
DELWAVE 1.0: deep learning surrogate model of surface wave climate in the Adriatic Basin
StraitFlux – precise computations of water strait fluxes on various modeling grids
Comparison of the Coastal and Regional Ocean COmmunity model (CROCO) and NCAR-LES in non-hydrostatic simulations
Intercomparisons of Tracker v1.1 and four other ocean particle-tracking software packages in the Regional Ocean Modeling System
CAR36, a regional high-resolution ocean forecasting system for improving drift and beaching of Sargassum in the Caribbean archipelago
Implementation of additional spectral wave field exchanges in a three-dimensional wave–current coupled WAVEWATCH-III (version 6.07) and CROCO (version 1.2) configuration: assessment of their implications for macro-tidal coastal hydrodynamics
Comparison of 4-dimensional variational and ensemble optimal interpolation data assimilation systems using a Regional Ocean Modeling System (v3.4) configuration of the eddy-dominated East Australian Current system
LOCATE v1.0: numerical modelling of floating marine debris dispersion in coastal regions using Parcels v2.4.2
New insights into the South China Sea throughflow and water budget seasonal cycle: evaluation and analysis of a high-resolution configuration of the ocean model SYMPHONIE version 2.4
MQGeometry-1.0: a multi-layer quasi-geostrophic solver on non-rectangular geometries
Parameter estimation for ocean background vertical diffusivity coefficients in the Community Earth System Model (v1.2.1) and its impact on El Niño–Southern Oscillation forecasts
Great Lakes wave forecast system on high-resolution unstructured meshes
Impact of increased resolution on Arctic Ocean simulations in Ocean Model Intercomparison Project phase 2 (OMIP-2)
A high-resolution physical–biogeochemical model for marine resource applications in the northwest Atlantic (MOM6-COBALT-NWA12 v1.0)
A flexible z-layers approach for the accurate representation of free surface flows in a coastal ocean model (SHYFEM v. 7_5_71)
Implementation and assessment of a model including mixotrophs and the carbonate cycle (Eco3M_MIX-CarbOx v1.0) in a highly dynamic Mediterranean coastal environment (Bay of Marseille, France) – Part 1: Evolution of ecosystem composition under limited light and nutrient conditions
Ocean wave tracing v.1: a numerical solver of the wave ray equations for ocean waves on variable currents at arbitrary depths
Design and evaluation of an efficient high-precision ocean surface wave model with a multiscale grid system (MSG_Wav1.0)
Evaluation of the CMCC global eddying ocean model for the Ocean Model Intercomparison Project (OMIP2)
Barents-2.5km v2.0: an operational data-assimilative coupled ocean and sea ice ensemble prediction model for the Barents Sea and Svalbard
Open-ocean tides simulated by ICON-O, version icon-2.6.6
Using Probability Density Functions to Evaluate Models (PDFEM, v1.0) to compare a biogeochemical model with satellite-derived chlorophyll
Data assimilation sensitivity experiments in the East Auckland Current system using 4D-Var
Antoine Mathieu, Yeulwoo Kim, Tian-Jian Hsu, Cyrille Bonamy, and Julien Chauchat
Geosci. Model Dev., 18, 1561–1573, https://doi.org/10.5194/gmd-18-1561-2025, https://doi.org/10.5194/gmd-18-1561-2025, 2025
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Most of the tools available to model sediment transport do not account for complex physical mechanisms such as surface-wave-driven processes. In this study, a new model, sedInterFoam, allows us to reproduce numerically complex configurations in order to investigate coastal sediment transport applications dominated by surface waves and to gain insight into the complex physical processes associated with breaking waves and morphodynamics.
Zhaoru Zhang, Chuan Xie, Chuning Wang, Yuanjie Chen, Heng Hu, and Xiaoqiao Wang
Geosci. Model Dev., 18, 1375–1393, https://doi.org/10.5194/gmd-18-1375-2025, https://doi.org/10.5194/gmd-18-1375-2025, 2025
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A coupled fine-resolution ocean–ice model is developed for the Ross Sea and adjacent regions in Antarctica, a key area for the formation of global ocean bottom water, the Antarctic Bottom Water (AABW), which affects global ocean circulation. The model has a high skill level in simulating sea ice production driving the AABW source water formation and AABW properties when assessed against observations. A model experiment shows a significant impact of ice shelf melting on the AABW characteristics.
Swantje Bastin, Aleksei Koldunov, Florian Schütte, Oliver Gutjahr, Marta Agnieszka Mrozowska, Tim Fischer, Radomyra Shevchenko, Arjun Kumar, Nikolay Koldunov, Helmuth Haak, Nils Brüggemann, Rebecca Hummels, Mia Sophie Specht, Johann Jungclaus, Sergey Danilov, Marcus Dengler, and Markus Jochum
Geosci. Model Dev., 18, 1189–1220, https://doi.org/10.5194/gmd-18-1189-2025, https://doi.org/10.5194/gmd-18-1189-2025, 2025
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Vertical mixing is an important process, for example, for tropical sea surface temperature, but cannot be resolved by ocean models. Comparisons of mixing schemes and settings have usually been done with a single model, sometimes yielding conflicting results. We systematically compare two widely used schemes with different parameter settings in two different ocean models and show that most effects from mixing scheme parameter changes are model-dependent.
Marko Rus, Hrvoje Mihanović, Matjaž Ličer, and Matej Kristan
Geosci. Model Dev., 18, 605–620, https://doi.org/10.5194/gmd-18-605-2025, https://doi.org/10.5194/gmd-18-605-2025, 2025
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HIDRA3 is a deep-learning model for predicting sea levels and storm surges, offering significant improvements over previous models and numerical simulations. It utilizes data from multiple tide gauges, enhancing predictions even with limited historical data and during sensor outages. With its advanced architecture, HIDRA3 outperforms current state-of-the-art models by achieving a mean absolute error of up to 15 % lower, proving effective for coastal flood forecasting under diverse conditions.
Isabel Jalón-Rojas, Damien Sous, and Vincent Marieu
Geosci. Model Dev., 18, 319–336, https://doi.org/10.5194/gmd-18-319-2025, https://doi.org/10.5194/gmd-18-319-2025, 2025
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This study presents a novel modeling approach for understanding microplastic transport in coastal waters. The model accurately replicates experimental data and reveals key transport mechanisms. The findings enhance our knowledge of how microplastics move in nearshore environments, aiding in coastal management and efforts to combat plastic pollution globally.
Greig Oldford, Tereza Jarníková, Villy Christensen, and Michael Dunphy
Geosci. Model Dev., 18, 211–237, https://doi.org/10.5194/gmd-18-211-2025, https://doi.org/10.5194/gmd-18-211-2025, 2025
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We developed a 3D ocean model called the Hindcast of the Salish Sea (HOTSSea v1) that recreates physical conditions throughout the Salish Sea from 1980 to 2018. It was not clear that acceptable accuracy could be achieved because of computational and data limitations, but the model's predictions agreed well with observations. When we used the model to examine ocean temperature trends in areas that lack observations, it indicated that some seasons and areas are warming faster than others.
Kyoko Ohashi, Arnaud Laurent, Christoph Renkl, Jinyu Sheng, Katja Fennel, and Eric Oliver
Geosci. Model Dev., 17, 8697–8733, https://doi.org/10.5194/gmd-17-8697-2024, https://doi.org/10.5194/gmd-17-8697-2024, 2024
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We developed a modelling system of the northwest Atlantic Ocean that simulates the currents, temperature, salinity, and parts of the biochemical cycle of the ocean, as well as sea ice. The system combines advanced, open-source models and can be used to study, for example, the ocean capture of atmospheric carbon dioxide, which is a key process in the global climate. The system produces realistic results, and we use it to investigate the roles of tides and sea ice in the northwest Atlantic Ocean.
Eui-Jong Kang, Byung-Ju Sohn, Sang-Woo Kim, Wonho Kim, Young-Cheol Kwon, Seung-Bum Kim, Hyoung-Wook Chun, and Chao Liu
Geosci. Model Dev., 17, 8553–8568, https://doi.org/10.5194/gmd-17-8553-2024, https://doi.org/10.5194/gmd-17-8553-2024, 2024
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Sea surface temperature (SST) is vital in climate, weather, and ocean sciences because it influences air–sea interactions. Errors in the ECMWF model's scheme for predicting ocean skin temperature prompted a revision of the ocean mixed layer model. Validation against infrared measurements and buoys showed a good correlation with minimal deviations. The revised model accurately simulates SST variations and aligns with solar radiation distributions, showing promise for weather and climate models.
Qin Zhou, Chen Zhao, Rupert Gladstone, Tore Hattermann, David Gwyther, and Benjamin Galton-Fenzi
Geosci. Model Dev., 17, 8243–8265, https://doi.org/10.5194/gmd-17-8243-2024, https://doi.org/10.5194/gmd-17-8243-2024, 2024
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We introduce an accelerated forcing approach to address timescale discrepancies between the ice sheets and ocean components in coupled modelling by reducing the ocean simulation duration. The approach is evaluated using idealized coupled models, and its limitations in real-world applications are discussed. Our results suggest it can be a valuable tool for process-oriented coupled ice sheet–ocean modelling and downscaling climate simulations with such models.
Jan D. Zika and Taimoor Sohail
Geosci. Model Dev., 17, 8049–8068, https://doi.org/10.5194/gmd-17-8049-2024, https://doi.org/10.5194/gmd-17-8049-2024, 2024
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We describe a method to relate fluxes of heat and freshwater at the sea surface to the resulting distribution of seawater among categories such as warm and salty or cold and salty. The method exploits the laws that govern how heat and salt change when water mixes. The method will allow the climate community to improve estimates of how much heat the ocean is absorbing and how rainfall and evaporation are changing across the globe.
Gloria Pietropolli, Luca Manzoni, and Gianpiero Cossarini
Geosci. Model Dev., 17, 7347–7364, https://doi.org/10.5194/gmd-17-7347-2024, https://doi.org/10.5194/gmd-17-7347-2024, 2024
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Monitoring the ocean is essential for studying marine life and human impact. Our new software, PPCon, uses ocean data to predict key factors like nitrate and chlorophyll levels, which are hard to measure directly. By leveraging machine learning, PPCon offers more accurate and efficient predictions.
Davi Mignac, Jennifer Waters, Daniel J. Lea, Matthew J. Martin, James While, Anthony T. Weaver, Arthur Vidard, Catherine Guiavarc’h, Dave Storkey, David Ford, Edward W. Blockley, Jonathan Baker, Keith Haines, Martin R. Price, Michael J. Bell, and Richard Renshaw
EGUsphere, https://doi.org/10.5194/egusphere-2024-3143, https://doi.org/10.5194/egusphere-2024-3143, 2024
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We describe major improvements of the Met Office's global ocean-sea ice forecasting system. The models and the way observations are used to improve the forecasts were changed, which led to a significant error reduction of 1-day forecasts. The new system performance in past conditions, where sub-surface observations are scarce, was improved with more consistent ocean heat content estimates. The new system will be of better use for climate studies and will provide improved forecasts for end users.
Axelle Gaffet, Xavier Bertin, Damien Sous, Héloïse Michaud, Aron Roland, and Emmanuel Cordier
EGUsphere, https://doi.org/10.5194/egusphere-2024-2610, https://doi.org/10.5194/egusphere-2024-2610, 2024
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This study presents a new global wave model that improves predictions of sea-states in tropical areas. By employing advanced techniques to correct wind field errors and simulate distant swells, our new global wave model allows for the first time direct comparisons in shallow waters close to shore. The model's predictions were validated both globally using satellite data and nearshore with data collected around several tropical islands.
Marina Amadori, Abolfazl Irani Rahaghi, Damien Bouffard, and Marco Toffolon
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-118, https://doi.org/10.5194/gmd-2024-118, 2024
Revised manuscript accepted for GMD
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Models simplify reality using assumptions, which can sometimes introduce flaws and affect their accuracy. Properly calibrating model parameters is essential, and although automated tools can speed up this process, they may occasionally produce incorrect values due to inconsistencies in the model. We demonstrate that by carefully applying automated tools, we were able to identify and correct a flaw in a widely used model for lake environments.
Jan De Rydt, Nicolas C. Jourdain, Yoshihiro Nakayama, Mathias van Caspel, Ralph Timmermann, Pierre Mathiot, Xylar S. Asay-Davis, Hélène Seroussi, Pierre Dutrieux, Ben Galton-Fenzi, David Holland, and Ronja Reese
Geosci. Model Dev., 17, 7105–7139, https://doi.org/10.5194/gmd-17-7105-2024, https://doi.org/10.5194/gmd-17-7105-2024, 2024
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Global climate models do not reliably simulate sea-level change due to ice-sheet–ocean interactions. We propose a community modelling effort to conduct a series of well-defined experiments to compare models with observations and study how models respond to a range of perturbations in climate and ice-sheet geometry. The second Marine Ice Sheet–Ocean Model Intercomparison Project will continue to lay the groundwork for including ice-sheet–ocean interactions in global-scale IPCC-class models.
Qian Wang, Yang Zhang, Fei Chai, Y. Joseph Zhang, and Lorenzo Zampieri
Geosci. Model Dev., 17, 7067–7081, https://doi.org/10.5194/gmd-17-7067-2024, https://doi.org/10.5194/gmd-17-7067-2024, 2024
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We coupled an unstructured hydro-model with an advanced column sea ice model to meet the growing demand for increased resolution and complexity in unstructured sea ice models. Additionally, we present a novel tracer transport scheme for the sea ice coupled model and demonstrate that this scheme fulfills the requirements for conservation, accuracy, efficiency, and monotonicity in an idealized test. Our new coupled model also has good performance in realistic tests.
Adrien Garinet, Marine Herrmann, Patrick Marsaleix, and Juliette Pénicaud
Geosci. Model Dev., 17, 6967–6986, https://doi.org/10.5194/gmd-17-6967-2024, https://doi.org/10.5194/gmd-17-6967-2024, 2024
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Mixing is a crucial aspect of the ocean, but its accurate representation in computer simulations is made challenging by errors that result in unwanted mixing, compromising simulation realism. Here we illustrate the spurious effect that tides can have on simulations of south-east Asia. Although they play an important role in determining the state of the ocean, they can increase numerical errors and make simulation outputs less realistic. We also provide insights into how to reduce these errors.
Mohamed Ayache, Jean-Claude Dutay, Anne Mouchet, Kazuyo Tachikawa, Camille Risi, and Gilles Ramstein
Geosci. Model Dev., 17, 6627–6655, https://doi.org/10.5194/gmd-17-6627-2024, https://doi.org/10.5194/gmd-17-6627-2024, 2024
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Water isotopes (δ18O, δD) are one of the most widely used proxies in ocean climate research. Previous studies using water isotope observations and modelling have highlighted the importance of understanding spatial and temporal isotopic variability for a quantitative interpretation of these tracers. Here we present the first results of a high-resolution regional dynamical model (at 1/12° horizontal resolution) developed for the Mediterranean Sea, one of the hotspots of ongoing climate change.
Cara Nissen, Nicole S. Lovenduski, Mathew Maltrud, Alison R. Gray, Yohei Takano, Kristen Falcinelli, Jade Sauvé, and Katherine Smith
Geosci. Model Dev., 17, 6415–6435, https://doi.org/10.5194/gmd-17-6415-2024, https://doi.org/10.5194/gmd-17-6415-2024, 2024
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Autonomous profiling floats have provided unprecedented observational coverage of the global ocean, but uncertainties remain about whether their sampling frequency and density capture the true spatiotemporal variability of physical, biogeochemical, and biological properties. Here, we present the novel synthetic biogeochemical float capabilities of the Energy Exascale Earth System Model version 2 and demonstrate their utility as a test bed to address these uncertainties.
Usama Kadri, Ali Abdolali, and Maxim Filimonov
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-139, https://doi.org/10.5194/gmd-2024-139, 2024
Revised manuscript accepted for GMD
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The GREAT v1.0 software introduces a novel tsunami warning technology for global real-time analysis. It leverages acoustic signals generated by tsunamis, which propagate faster than the tsunami itself, enabling real-time detection and assessment. Integrating various models, the software provides reliable and rapid assessment, mapping risk areas, and estimating tsunami amplitude. This advancement reduces false alarms and enhances global tsunami warning systems' accuracy and efficiency.
Ye Yuan, Fujiang Yu, Zhi Chen, Xueding Li, Fang Hou, Yuanyong Gao, Zhiyi Gao, and Renbo Pang
Geosci. Model Dev., 17, 6123–6136, https://doi.org/10.5194/gmd-17-6123-2024, https://doi.org/10.5194/gmd-17-6123-2024, 2024
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Accurate and timely forecasting of ocean waves is of great importance to the safety of marine transportation and offshore engineering. In this study, GPU-accelerated computing is introduced in WAve Modeling Cycle 6 (WAM6). With this effort, global high-resolution wave simulations can now run on GPUs up to tens of times faster than the currently available models can on a CPU node with results that are just as accurate.
Krysten Rutherford, Laura Bianucci, and William Floyd
Geosci. Model Dev., 17, 6083–6104, https://doi.org/10.5194/gmd-17-6083-2024, https://doi.org/10.5194/gmd-17-6083-2024, 2024
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Nearshore ocean models often lack complete information about freshwater fluxes due to numerous ungauged rivers and streams. We tested a simple rain-based hydrological model as inputs into an ocean model of Quatsino Sound, Canada, with the aim of improving the representation of the land–ocean connection in the nearshore model. Through multiple tests, we found that the performance of the ocean model improved when providing 60 % or more of the freshwater inputs from the simple runoff model.
Neill Mackay, Taimoor Sohail, Jan David Zika, Richard G. Williams, Oliver Andrews, and Andrew James Watson
Geosci. Model Dev., 17, 5987–6005, https://doi.org/10.5194/gmd-17-5987-2024, https://doi.org/10.5194/gmd-17-5987-2024, 2024
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The ocean absorbs carbon dioxide from the atmosphere, mitigating climate change, but estimates of the uptake do not always agree. There is a need to reconcile these differing estimates and to improve our understanding of ocean carbon uptake. We present a new method for estimating ocean carbon uptake and test it with model data. The method effectively diagnoses the ocean carbon uptake from limited data and therefore shows promise for reconciling different observational estimates.
Lucille Barré, Frédéric Diaz, Thibaut Wagener, Camille Mazoyer, Christophe Yohia, and Christel Pinazo
Geosci. Model Dev., 17, 5851–5882, https://doi.org/10.5194/gmd-17-5851-2024, https://doi.org/10.5194/gmd-17-5851-2024, 2024
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The carbonate system is typically studied using measurements, but modeling can contribute valuable insights. Using a biogeochemical model, we propose a new representation of total alkalinity, dissolved inorganic carbon, pCO2, and pH in a highly dynamic Mediterranean coastal area, the Bay of Marseille, a useful addition to measurements. Through a detailed analysis of pCO2 and air–sea CO2 fluxes, we show that variations are strongly impacted by the hydrodynamic processes that affect the bay.
Xuanxuan Gao, Shuiqing Li, Dongxue Mo, Yahao Liu, and Po Hu
Geosci. Model Dev., 17, 5497–5509, https://doi.org/10.5194/gmd-17-5497-2024, https://doi.org/10.5194/gmd-17-5497-2024, 2024
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Storm surges generate coastal inundation and expose populations and properties to danger. We developed a novel storm surge inundation model for efficient prediction. Estimates compare well with in situ measurements and results from a numerical model. The new model is a significant improvement on existing numerical models, with much higher computational efficiency and stability, which allows timely disaster prevention and mitigation.
Vincenzo de Toma, Daniele Ciani, Yassmin Hesham Essa, Chunxue Yang, Vincenzo Artale, Andrea Pisano, Davide Cavaliere, Rosalia Santoleri, and Andrea Storto
Geosci. Model Dev., 17, 5145–5165, https://doi.org/10.5194/gmd-17-5145-2024, https://doi.org/10.5194/gmd-17-5145-2024, 2024
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This study explores methods to reconstruct diurnal variations in skin sea surface temperature in a model of the Mediterranean Sea. Our new approach, considering chlorophyll concentration, enhances spatial and temporal variations in the warm layer. Comparative analysis shows context-dependent improvements. The proposed "chlorophyll-interactive" method brings the surface net total heat flux closer to zero annually, despite a net heat loss from the ocean to the atmosphere.
David Storkey, Pierre Mathiot, Michael J. Bell, Dan Copsey, Catherine Guiavarc'h, Helene T. Hewitt, Jeff Ridley, and Malcolm J. Roberts
EGUsphere, https://doi.org/10.5194/egusphere-2024-1414, https://doi.org/10.5194/egusphere-2024-1414, 2024
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The Southern Ocean is a key region of the world ocean in the context of climate change studies. We show that the HadGEM3 coupled model with intermediate ocean resolution struggles to accurately simulate the Southern Ocean. Increasing the frictional drag that the sea floor exerts on ocean currents, and introducing a representation of unresolved ocean eddies both appear to reduce the large-scale biases in this model.
Peter Mlakar, Antonio Ricchi, Sandro Carniel, Davide Bonaldo, and Matjaž Ličer
Geosci. Model Dev., 17, 4705–4725, https://doi.org/10.5194/gmd-17-4705-2024, https://doi.org/10.5194/gmd-17-4705-2024, 2024
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We propose a new point-prediction model, the DEep Learning WAVe Emulating model (DELWAVE), which successfully emulates the Simulating WAves Nearshore model (SWAN) over synoptic to climate timescales. Compared to control climatology over all wind directions, the mismatch between DELWAVE and SWAN is generally small compared to the difference between scenario and control conditions, suggesting that the noise introduced by surrogate modelling is substantially weaker than the climate change signal.
Susanna Winkelbauer, Michael Mayer, and Leopold Haimberger
Geosci. Model Dev., 17, 4603–4620, https://doi.org/10.5194/gmd-17-4603-2024, https://doi.org/10.5194/gmd-17-4603-2024, 2024
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Oceanic transports shape the global climate, but the evaluation and validation of this key quantity based on reanalysis and model data are complicated by the distortion of the used modelling grids and the large number of different grid types. We present two new methods that allow the calculation of oceanic fluxes of volume, heat, salinity, and ice through almost arbitrary sections for various models and reanalyses that are independent of the used modelling grids.
Xiaoyu Fan, Baylor Fox-Kemper, Nobuhiro Suzuki, Qing Li, Patrick Marchesiello, Peter P. Sullivan, and Paul S. Hall
Geosci. Model Dev., 17, 4095–4113, https://doi.org/10.5194/gmd-17-4095-2024, https://doi.org/10.5194/gmd-17-4095-2024, 2024
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Simulations of the oceanic turbulent boundary layer using the nonhydrostatic CROCO ROMS and NCAR-LES models are compared. CROCO and the NCAR-LES are accurate in a similar manner, but CROCO’s additional features (e.g., nesting and realism) and its compressible turbulence formulation carry additional costs.
Jilian Xiong and Parker MacCready
Geosci. Model Dev., 17, 3341–3356, https://doi.org/10.5194/gmd-17-3341-2024, https://doi.org/10.5194/gmd-17-3341-2024, 2024
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The new offline particle tracking package, Tracker v1.1, is introduced to the Regional Ocean Modeling System, featuring an efficient nearest-neighbor algorithm to enhance particle-tracking speed. Its performance was evaluated against four other tracking packages and passive dye. Despite unique features, all packages yield comparable results. Running multiple packages within the same circulation model allows comparison of their performance and ease of use.
Sylvain Cailleau, Laurent Bessières, Léonel Chiendje, Flavie Dubost, Guillaume Reffray, Jean-Michel Lellouche, Simon van Gennip, Charly Régnier, Marie Drevillon, Marc Tressol, Matthieu Clavier, Julien Temple-Boyer, and Léo Berline
Geosci. Model Dev., 17, 3157–3173, https://doi.org/10.5194/gmd-17-3157-2024, https://doi.org/10.5194/gmd-17-3157-2024, 2024
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In order to improve Sargassum drift forecasting in the Caribbean area, drift models can be forced by higher-resolution ocean currents. To this goal a 3 km resolution regional ocean model has been developed. Its assessment is presented with a particular focus on the reproduction of fine structures representing key features of the Caribbean region dynamics and Sargassum transport. The simulated propagation of a North Brazil Current eddy and its dissipation was found to be quite realistic.
Gaetano Porcile, Anne-Claire Bennis, Martial Boutet, Sophie Le Bot, Franck Dumas, and Swen Jullien
Geosci. Model Dev., 17, 2829–2853, https://doi.org/10.5194/gmd-17-2829-2024, https://doi.org/10.5194/gmd-17-2829-2024, 2024
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Here a new method of modelling the interaction between ocean currents and waves is presented. We developed an advanced coupling of two models, one for ocean currents and one for waves. In previous couplings, some wave-related calculations were based on simplified assumptions. Our method uses more complex calculations to better represent wave–current interactions. We tested it in a macro-tidal coastal area and found that it significantly improves the model accuracy, especially during storms.
Colette Gabrielle Kerry, Moninya Roughan, Shane Keating, David Gwyther, Gary Brassington, Adil Siripatana, and Joao Marcos A. C. Souza
Geosci. Model Dev., 17, 2359–2386, https://doi.org/10.5194/gmd-17-2359-2024, https://doi.org/10.5194/gmd-17-2359-2024, 2024
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Ocean forecasting relies on the combination of numerical models and ocean observations through data assimilation (DA). Here we assess the performance of two DA systems in a dynamic western boundary current, the East Australian Current, across a common modelling and observational framework. We show that the more advanced, time-dependent method outperforms the time-independent method for forecast horizons of 5 d. This advocates the use of advanced methods for highly variable oceanic regions.
Ivan Hernandez, Leidy M. Castro-Rosero, Manuel Espino, and Jose M. Alsina Torrent
Geosci. Model Dev., 17, 2221–2245, https://doi.org/10.5194/gmd-17-2221-2024, https://doi.org/10.5194/gmd-17-2221-2024, 2024
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The LOCATE numerical model was developed to conduct Lagrangian simulations of the transport and dispersion of marine debris at coastal scales. High-resolution hydrodynamic data and a beaching module that used particle distance to the shore for land–water boundary detection were used on a realistic debris discharge scenario comparing hydrodynamic data at various resolutions. Coastal processes and complex geometric structures were resolved when using nested grids and distance-to-shore beaching.
Ngoc B. Trinh, Marine Herrmann, Caroline Ulses, Patrick Marsaleix, Thomas Duhaut, Thai To Duy, Claude Estournel, and R. Kipp Shearman
Geosci. Model Dev., 17, 1831–1867, https://doi.org/10.5194/gmd-17-1831-2024, https://doi.org/10.5194/gmd-17-1831-2024, 2024
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A high-resolution model was built to study the South China Sea (SCS) water, heat, and salt budgets. Model performance is demonstrated by comparison with observations and simulations. Important discards are observed if calculating offline, instead of online, lateral inflows and outflows of water, heat, and salt. The SCS mainly receives water from the Luzon Strait and releases it through the Mindoro, Taiwan, and Karimata straits. SCS surface interocean water exchanges are driven by monsoon winds.
Louis Thiry, Long Li, Guillaume Roullet, and Etienne Mémin
Geosci. Model Dev., 17, 1749–1764, https://doi.org/10.5194/gmd-17-1749-2024, https://doi.org/10.5194/gmd-17-1749-2024, 2024
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We present a new way of solving the quasi-geostrophic (QG) equations, a simple set of equations describing ocean dynamics. Our method is solely based on the numerical methods used to solve the equations and requires no parameter tuning. Moreover, it can handle non-rectangular geometries, opening the way to study QG equations on realistic domains. We release a PyTorch implementation to ease future machine-learning developments on top of the presented method.
Zheqi Shen, Yihao Chen, Xiaojing Li, and Xunshu Song
Geosci. Model Dev., 17, 1651–1665, https://doi.org/10.5194/gmd-17-1651-2024, https://doi.org/10.5194/gmd-17-1651-2024, 2024
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Parameter estimation is the process that optimizes model parameters using observations, which could reduce model errors and improve forecasting. In this study, we conducted parameter estimation experiments using the CESM and the ensemble adjustment Kalman filter. The obtained initial conditions and parameters are used to perform ensemble forecast experiments for ENSO forecasting. The results revealed that parameter estimation could reduce analysis errors and improve ENSO forecast skills.
Ali Abdolali, Saeideh Banihashemi, Jose Henrique Alves, Aron Roland, Tyler J. Hesser, Mary Anderson Bryant, and Jane McKee Smith
Geosci. Model Dev., 17, 1023–1039, https://doi.org/10.5194/gmd-17-1023-2024, https://doi.org/10.5194/gmd-17-1023-2024, 2024
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This article presents an overview of the development and implementation of Great Lake Wave Unstructured (GLWUv2.0), including the core model and workflow design and development. The validation was conducted against in situ data for the re-forecasted duration for summer and wintertime (ice season). The article describes the limitations and challenges encountered in the operational environment and the path forward for the next generation of wave forecast systems in enclosed basins like the GL.
Qiang Wang, Qi Shu, Alexandra Bozec, Eric P. Chassignet, Pier Giuseppe Fogli, Baylor Fox-Kemper, Andy McC. Hogg, Doroteaciro Iovino, Andrew E. Kiss, Nikolay Koldunov, Julien Le Sommer, Yiwen Li, Pengfei Lin, Hailong Liu, Igor Polyakov, Patrick Scholz, Dmitry Sidorenko, Shizhu Wang, and Xiaobiao Xu
Geosci. Model Dev., 17, 347–379, https://doi.org/10.5194/gmd-17-347-2024, https://doi.org/10.5194/gmd-17-347-2024, 2024
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Increasing resolution improves model skills in simulating the Arctic Ocean, but other factors such as parameterizations and numerics are at least of the same importance for obtaining reliable simulations.
Andrew C. Ross, Charles A. Stock, Alistair Adcroft, Enrique Curchitser, Robert Hallberg, Matthew J. Harrison, Katherine Hedstrom, Niki Zadeh, Michael Alexander, Wenhao Chen, Elizabeth J. Drenkard, Hubert du Pontavice, Raphael Dussin, Fabian Gomez, Jasmin G. John, Dujuan Kang, Diane Lavoie, Laure Resplandy, Alizée Roobaert, Vincent Saba, Sang-Ik Shin, Samantha Siedlecki, and James Simkins
Geosci. Model Dev., 16, 6943–6985, https://doi.org/10.5194/gmd-16-6943-2023, https://doi.org/10.5194/gmd-16-6943-2023, 2023
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We evaluate a model for northwest Atlantic Ocean dynamics and biogeochemistry that balances high resolution with computational economy by building on the new regional features in the MOM6 ocean model and COBALT biogeochemical model. We test the model's ability to simulate impactful historical variability and find that the model simulates the mean state and variability of most features well, which suggests the model can provide information to inform living-marine-resource applications.
Luca Arpaia, Christian Ferrarin, Marco Bajo, and Georg Umgiesser
Geosci. Model Dev., 16, 6899–6919, https://doi.org/10.5194/gmd-16-6899-2023, https://doi.org/10.5194/gmd-16-6899-2023, 2023
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We propose a discrete multilayer shallow water model based on z-layers which, thanks to the insertion and removal of surface layers, can deal with an arbitrarily large tidal oscillation independently of the vertical resolution. The algorithm is based on a two-step procedure used in numerical simulations with moving boundaries (grid movement followed by a grid topology change, that is, the insertion/removal of surface layers), which avoids the appearance of very thin surface layers.
Lucille Barré, Frédéric Diaz, Thibaut Wagener, France Van Wambeke, Camille Mazoyer, Christophe Yohia, and Christel Pinazo
Geosci. Model Dev., 16, 6701–6739, https://doi.org/10.5194/gmd-16-6701-2023, https://doi.org/10.5194/gmd-16-6701-2023, 2023
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While several studies have shown that mixotrophs play a crucial role in the carbon cycle, the impact of environmental forcings on their dynamics remains poorly investigated. Using a biogeochemical model that considers mixotrophs, we study the impact of light and nutrient concentration on the ecosystem composition in a highly dynamic Mediterranean coastal area: the Bay of Marseille. We show that mixotrophs cope better with oligotrophic conditions compared to strict auto- and heterotrophs.
Trygve Halsne, Kai Håkon Christensen, Gaute Hope, and Øyvind Breivik
Geosci. Model Dev., 16, 6515–6530, https://doi.org/10.5194/gmd-16-6515-2023, https://doi.org/10.5194/gmd-16-6515-2023, 2023
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Surface waves that propagate in oceanic or coastal environments get influenced by their surroundings. Changes in the ambient current or the depth profile affect the wave propagation path, and the change in wave direction is called refraction. Some analytical solutions to the governing equations exist under ideal conditions, but for realistic situations, the equations must be solved numerically. Here we present such a numerical solver under an open-source license.
Jiangyu Li, Shaoqing Zhang, Qingxiang Liu, Xiaolin Yu, and Zhiwei Zhang
Geosci. Model Dev., 16, 6393–6412, https://doi.org/10.5194/gmd-16-6393-2023, https://doi.org/10.5194/gmd-16-6393-2023, 2023
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Ocean surface waves play an important role in the air–sea interface but are rarely activated in high-resolution Earth system simulations due to their expensive computational costs. To alleviate this situation, this paper designs a new wave modeling framework with a multiscale grid system. Evaluations of a series of numerical experiments show that it has good feasibility and applicability in the WAVEWATCH III model, WW3, and can achieve the goals of efficient and high-precision wave simulation.
Doroteaciro Iovino, Pier Giuseppe Fogli, and Simona Masina
Geosci. Model Dev., 16, 6127–6159, https://doi.org/10.5194/gmd-16-6127-2023, https://doi.org/10.5194/gmd-16-6127-2023, 2023
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This paper describes the model performance of three global ocean–sea ice configurations, from non-eddying (1°) to eddy-rich (1/16°) resolutions. Model simulations are obtained following the Ocean Model Intercomparison Project phase 2 (OMIP2) protocol. We compare key global climate variables across the three models and against observations, emphasizing the relative advantages and disadvantages of running forced ocean–sea ice models at higher resolution.
Johannes Röhrs, Yvonne Gusdal, Edel S. U. Rikardsen, Marina Durán Moro, Jostein Brændshøi, Nils Melsom Kristensen, Sindre Fritzner, Keguang Wang, Ann Kristin Sperrevik, Martina Idžanović, Thomas Lavergne, Jens Boldingh Debernard, and Kai H. Christensen
Geosci. Model Dev., 16, 5401–5426, https://doi.org/10.5194/gmd-16-5401-2023, https://doi.org/10.5194/gmd-16-5401-2023, 2023
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A model to predict ocean currents, temperature, and sea ice is presented, covering the Barents Sea and northern Norway. To quantify forecast uncertainties, the model calculates ensemble forecasts with 24 realizations of ocean and ice conditions. Observations from satellites, buoys, and ships are ingested by the model. The model forecasts are compared with observations, and we show that the ocean model has skill in predicting sea surface temperatures.
Jin-Song von Storch, Eileen Hertwig, Veit Lüschow, Nils Brüggemann, Helmuth Haak, Peter Korn, and Vikram Singh
Geosci. Model Dev., 16, 5179–5196, https://doi.org/10.5194/gmd-16-5179-2023, https://doi.org/10.5194/gmd-16-5179-2023, 2023
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The new ocean general circulation model ICON-O is developed for running experiments at kilometer scales and beyond. One targeted application is to simulate internal tides crucial for ocean mixing. To ensure their realism, which is difficult to assess, we evaluate the barotropic tides that generate internal tides. We show that ICON-O is able to realistically simulate the major aspects of the observed barotropic tides and discuss the aspects that impact the quality of the simulated tides.
Bror F. Jönsson, Christopher L. Follett, Jacob Bien, Stephanie Dutkiewicz, Sangwon Hyun, Gemma Kulk, Gael L. Forget, Christian Müller, Marie-Fanny Racault, Christopher N. Hill, Thomas Jackson, and Shubha Sathyendranath
Geosci. Model Dev., 16, 4639–4657, https://doi.org/10.5194/gmd-16-4639-2023, https://doi.org/10.5194/gmd-16-4639-2023, 2023
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While biogeochemical models and satellite-derived ocean color data provide unprecedented information, it is problematic to compare them. Here, we present a new approach based on comparing probability density distributions of model and satellite properties to assess model skills. We also introduce Earth mover's distances as a novel and powerful metric to quantify the misfit between models and observations. We find that how 3D chlorophyll fields are aggregated can be a significant source of error.
Rafael Santana, Helen Macdonald, Joanne O'Callaghan, Brian Powell, Sarah Wakes, and Sutara H. Suanda
Geosci. Model Dev., 16, 3675–3698, https://doi.org/10.5194/gmd-16-3675-2023, https://doi.org/10.5194/gmd-16-3675-2023, 2023
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We show the importance of assimilating subsurface temperature and velocity data in a model of the East Auckland Current. Assimilation of velocity increased the representation of large oceanic vortexes. Assimilation of temperature is needed to correctly simulate temperatures around 100 m depth, which is the most difficult region to simulate in ocean models. Our simulations showed improved results in comparison to the US Navy global model and highlight the importance of regional models.
Cited articles
Adcroft, A., Campin, J. M., Dutkiewicz, S., Evangelinos, C., Ferreira, D., Forget, G., Fox-Kemper, B., Heimbach, P., Hill, C., Hill, E., Jahn, O., Losch, M., Marshall, J., Maze, M., Menemenlis, D., and Molod, A.: MITgcm user manual, MIT Department of EAPS, Cambridge, 479 pp., 2016.
Akoglu, E., Libralato, S., Salihoglu, B., Oguz, T., and Solidoro, C.: EwE-F 1.0: an implementation of Ecopath with Ecosim in Fortran 95/2003 for coupling and integration with other models, Geosci. Model Dev., 8, 2687–2699, https://doi.org/10.5194/gmd-8-2687-2015, 2015.
Artale, V., Calmanti, S., Carillo, A., Dell'Aquila, A., Herrmann, M., Pisacane, G., Ruti, P. M., Sannino, G., Struglia, M. V., Giorgi, F., and Bi, X.: An atmosphere–ocean regional climate model for the Mediterranean area: assessment of a present climate simulation, Clim. Dynam., 35, 721–740, 2010.
Artuso, F., Chamard, P., Piacentino, S., Sferlazzo, D. M., De Silvestri, L., Di Sarra, A., Meloni, D., and Monteleone, F.: Influence of transport and trends in atmospheric CO2 at Lampedusa, Atmos. Environ., 43, 3044–3051, 2009.
Aumont, O., Ethé, C., Tagliabue, A., Bopp, L., and Gehlen, M.: PISCES-v2: an ocean biogeochemical model for carbon and ecosystem studies, Geosci. Model Dev., 8, 2465–2513, https://doi.org/10.5194/gmd-8-2465-2015, 2015.
Barale, V., Jaquet, J. M., and Ndiaye, M.: Algal blooming patterns and anomalies in the Mediterranean Sea as derived from the SeaWiFS data set (1998–2003), Remote Sens. Environ., 112, 3300–3313, 2008.
Bensi, M., Cardin, V., and Rubino, A.: Thermohaline Variability and Mesoscale Dynamics Observed at the Deep-Ocean Observatory E2M3A in the Southern Adriatic Sea, in: The Mediterranean Sea: Temporal Variability and Spatial Patterns, edited by: Borzelli, G. L. E., Gačić, M., Lionello, P., and Malanotte-Rizzoli, P., John Wiley & Sons, Inc., Oxford, https://doi.org/10.1002/9781118847572.ch9, 2014.
Blom, J. G. and Verwer, J. G.: A comparison of integration methods for atmospheric transport-chemistry problems, J. Comput. Appl. Math. 16, 381–396, 2000.
Britton, C. M. and Dodd, J. D.: Relationships of photosynthetically active radiation and shortwave irradiance, Agr. Meteorol., 17, 1–7, 1976.
Bruggeman, J. and Bolding, K.: A general framework for aquatic biogeochemical models, Environ. Model. Softw., 61, 249–265, 2014.
Burchard, H., Bolding, K., Kühn, W., Meister, A., Neumann, T., and Umlauf, L.: Description of a flexible and extendable physical–biogeochemical model system for the water column, J. Marine Syst., 61, 180–211, 2006.
Butenschön, M., Zavatarelli, M., and Vichi, M.: Sensitivity of a marine coupled physical biogeochemical model to time resolution, integration scheme and time splitting method, Ocean Model., 52, 36–53, 2012.
Butenschön, M., Clark, J., Aldridge, J. N., Allen, J. I., Artioli, Y., Blackford, J., Bruggeman, J., Cazenave, P., Ciavatta, S., Kay, S., Lessin, G., van Leeuwen, S., van der Molen, J., de Mora, L., Polimene, L., Sailley, S., Stephens, N., and Torres, R.: ERSEM 15.06: a generic model for marine biogeochemistry and the ecosystem dynamics of the lower trophic levels, Geosci. Model Dev., 9, 1293–1339, https://doi.org/10.5194/gmd-9-1293-2016, 2016.
Cossarini, G., Solidoro, C., and Fonda Umani, S.: Dynamics of biogeochemical properties in temperate coastal areas of freshwater influence: lessons from the Northern Adriatic Sea (Gulf of Trieste), Estuar. Coast. Shelf S., 115, 63–74, 2012.
Cossarini, G., Querin, S., and Solidoro, C.: The continental shelf carbon pump in the northern Adriatic Sea (Mediterranean Sea): Influence of wintertime variability, Ecol. Model., 314, 118–134, 2015a.
Cossarini, G., Lazzari, P., and Solidoro, C.: Spatiotemporal variability of alkalinity in the Mediterranean Sea, Biogeosciences, 12, 1647–1658, https://doi.org/10.5194/bg-12-1647-2015, 2015b.
Crise, A., Allen, J. I., Baretta, J., Crispi, G., Mosetti, R., and Solidoro, C.: The Mediterranean pelagic ecosystem response to physical forcing, Prog. Oceanogr., 44, 219–243, 1999.
Epicoco, I., Mocavero, S., Macchia, F., Vichi, M., Lovato, T., Masina, S., and Aloisio, G.: Performance and results of the high-resolution biogeochemical model PELAGOS025 v1.0 within NEMO v3.4, Geosci. Model Dev., 9, 2115–2128, https://doi.org/10.5194/gmd-9-2115-2016, 2016.
Dutkiewicz, S., Follows, M. J., and Bragg, J. G.: Modeling the coupling of ocean ecology and biogeochemistry, Global Biogeochem. Cy., 23, GB4017, https://doi.org/10.1029/2008GB003405, 2009.
Follows, M. J., Ito, T., and Dutkiewicz, S.: On the solution of the carbonate chemistry system in ocean biogeochemistry models, Ocean Model., 12, 290–301, 2006.
Gačić, M., Lascaratos, A., Manca, B. B., and Mantziafou, A.: Adriatic deep water and interaction with the Eastern Mediterranean Sea, in: Physical Oceanography of the Adriatic Sea, Springer Netherlands, 111–142, 2001.
Gačić, M., Civitarese, G., Miserocchi, S., Cardin, V., Crise, A., and Mauri, E.: The open-ocean convection in the Southern Adriatic: a controlling mechanism of the spring phytoplankton bloom, Cont. Shelf Res., 22, 1897–1908, https://doi.org/10.1016/S0278-4343(02)00050-X, 2002.
Geider, R. J., MacIntyre, H. L., and Kana, T. M.: Dynamic model of phytoplankton growth and acclimation: responses of the balanced growth rate and the chlorophyll a: Carbon ratio to light, nutrient-limitation and temperature, Mar. Ecol.-Prog. Ser., 148, 187–200, 1997.
Giorgi, F., Pal, J. S., Bi, X., Sloan, L., Elguindi, N., and Solmon, F.: Introduction to the TAC special issue: the RegCNET network, Theor. Appl. Climatol., 86, 1–4, 2006
Haidvogel, D. B., Arango, H. G., Hedstrom, K., Beckmann, A., Malanotte-Rizzoli, P., and Shchepetkin, A. F.: Model evaluation experiments in the North Atlantic Basin: Simulations in nonlinear terrain-following coordinates, Dynam. Atmos. Oceans, 32, 239–281, 2000.
Hauck, J., Völker, C., Wang, T., Hoppema, M., Losch, M., and Wolf-Gladrow, D. A.: Seasonally different carbon flux changes in the Southern Ocean in response to the southern annular mode, Global Biogeochem. Cy., 27, 1236–1245, 2013.
Heavens, N. G., Ward, D. S., and Natalie, M. M.: Studying and Projecting Climate Change with Earth System Models, Nature Education Knowledge, 4, 4, 2013.
Janeković, I., Mihanović, H., Vilibić, I., and Tudor, M.: Extreme cooling and dense water formation estimates in open and coastal regions of the Adriatic Sea during the winter of 2012, J. Geophys. Res.-Oceans, 119, 3200–3218, https://doi.org/10.1002/2014JC009865, 2014.
Jöckel, P., Kerkweg, A., Buchholz-Dietsch, J., Tost, H., Sander, R., and Pozzer, A.: Technical Note: Coupling of chemical processes with the Modular Earth Submodel System (MESSy) submodel TRACER, Atmos. Chem. Phys., 8, 1677–1687, https://doi.org/10.5194/acp-8-1677-2008, 2008.
Large, W. G., McWilliams, J. C., and Doney, C. S.: Oceanic vertical mixing: a review and a model with nonlocal boundary layer parameterization, Rev. Geophys., 32, 363–403, 1994.
Lazzari, P., Teruzzi, A., Salon, S., Campagna, S., Calonaci, C., Colella, S., Tonani, M., and Crise, A.: Pre-operational short-term forecasts for Mediterranean Sea biogeochemistry, Ocean Sci., 6, 25–39, https://doi.org/10.5194/os-6-25-2010, 2010.
Lazzari, P., Solidoro, C., Ibello, V., Salon, S., Teruzzi, A., Béranger, K., Colella, S., and Crise, A.: Seasonal and inter-annual variability of plankton chlorophyll and primary production in the Mediterranean Sea: a modelling approach, Biogeosciences, 9, 217–233, https://doi.org/10.5194/bg-9-217-2012, 2012.
Lazzari, P., Solidoro, C., Salon, S., and Bolzon, G.: Spatial variability of phosphate and nitrate in the Mediterranean Sea: A modeling approach, Deep-Sea Res. Pt. I, 108, 39–52, 2016.
Legendre, L. and Rassoulzadegan, F.: Plankton and nutrient dynamics in marine water, Ophelia, 41, 153–172, 1995.
Ludwig, W., Dumont, E., Meybeck, M., and Heussner, S.: River discharges of water and nutrients to the Mediterranean and Black Sea: Major drivers for ecosystem changes during past and future decades?, Progr. Oceanogr., 80, 199–217, 2009.
Madec, G.: “NEMO ocean engine” (Draft edition r6039), Note du Pôle de modélisation, Institut Pierre-Simon Laplace (IPSL), France, No. 27 ISSN No. 1288-1619, 2014.
Manca, B., Burca, M., Giorgetti, A., Coatanoan, C., Garcia, M. J., and Iona, A.: Physical and biochemical averaged vertical profiles in the Mediterranean regions: an important tool to trace the climatology of water masses and to validate incoming data from operational oceanography, J. Marine Syst., 48, 83–116, 2004.
Mangoni, O., Modigh, M., Mozetič, P., Bergamasco, A., Rivaro, P., and Saggiomo, V.: Structure and photosyntetic properties of phytoplankton assemblages ina highly dynamic system, the northern Adriatic Sea, Estuar. Coast. Shelf Sci., 77, 633–644, https://doi.org/10.1016/j.ecss.2007.10.023, 2008.
Mann, K. H. and Lazier, J. R. N.: Dynamics of Marine Ecosystems, Blackwell Publishing, 496 pp., 2006.
Marini, M., Grilli, F., Guarnieri, A., Jones, B. H., Klajic, Z., Pinardi, N., and Sanxhaku, M.: Is the southeastern Adriatic Sea coastal strip an eutrophic area?, Estuar. Coast. Shelf Sci., 88, 395–406, 2010.
Marshall, J. C., Adcroft, A., Hill, C., Perelman, L., and Heisey, C.: A finite-volume, incompressible Navier-Stokes model for the studies of the ocean on parallel computers, J. Geophys. Res., 102, 5753–5766, 1997.
Melaku Canu, D., Ghermandi, A., Nunes, P. A., Lazzari, P., Cossarini, G., and Solidoro, C.: Estimating the value of carbon sequestration ecosystem services in the Mediterranean Sea: An ecological economics approach, Global Environ. Chang., 32, 87–95, 2015.
Neumann, T.: Towards a 3D-ecosystem model of the Baltic Sea, J. Marine Syst., 25, 405–419, 2000.
Parekh, P., Follows, M. J., and Boyle, E. A.: Decoupling of iron and phosphate in the global ocean, Global Biogeochem. Cy., 19, GB2020, https://doi.org/10.1029/2004GB002280, 2005.
Patti, B., Guisande, C., Bonanno, A., Basilone, G., Cuttitta, A., and Mazzola, S.: Role of physical forcings and nutrient availability on the control of satellite-based chlorophyll a concentration in the coastal upwelling area of the Sicilian Channel, Sci. Mar., 74, 577–588, 2010.
Polimene, L., Pinardi, N., Zavatarelli, M., and Colella, S.: The Adriatic Sea ecosystem seasonal cycle: Validation of a threedimensional numerical model, J. Geophys. Res.-Oceans, 111, C03S19, https://doi.org/10.1029/2005JC003260, 2006.
Querin, S., Cossarini, G., and Solidoro, C.: Simulating the formation and fate of dense water in a midlatitude marginal sea during normal and warm winter conditions, J. Geophys. Res.-Oceans, 118, 885–900, 2013.
Querin, S., Bensi, M., Cardin, V., Solidoro, C., Bacer, S., Mariotti, L., Stel, F., and Malačič, V.: Saw-tooth modulation of the deep-water thermohaline properties in the southern Adriatic Sea, J. Geophys. Res.-Oceans, 121, 4585–4600, https://doi.org/10.1002/2015JC011522, 2016.
Rinaldi, E., Buongiorno Nardelli, B., Volpe, G., and Santoleri, R.: Chlorophyll distribution and variability in the Sicily Channel (Mediterranean Sea) as seen by remote sensing data, Cont. Shelf Res., 77, 61–68, 2014.
Robson, B. J.: State of the art in modelling of phosphorus in aquatic systems: Review, criticisms and commentary, Environ. Model. Softw., 61, 339–359, 2014.
Salon, S., Cossarini, G., Lazzari, P., Teruzzi, A., Crise, A., and Solidoro, C.: Reanalysis of Mediterranean Sea biogeochemistry and the quest for biogeochemical seasonal forecasts, in: Operational Oceanography for Sustainable Blue Growth, edited by: Buch, E., Antoniou, Y., Eparkhina, D., and Nolan, G., Proc. of the 7th EuroGOOS International Conference, EuroGOOS Publication, ISBN: 9789082479904, 2015.
Solidoro, C., Bastianini, M., Bandelj, V., Codermatz, R., Cossarini, G., Melaku Canu, D., Ravagnan, E., Salon, S., and Trevisani, S.: Current state, scales of variability, and trends of biogeochemical properties in the northern Adriatic Sea, J. Geophys. Res., 114, C07S91, https://doi.org/10.1029/2008JC004838, 2009.
Sweby, P. K.: High resolution schemes using flux-limiters for hyperbolic conservation laws, SIAM J. Numer. Anal., 21, 995–1011, https://doi.org/10.1137/0721062, 1984.
Teruzzi, A., Dobricic, S., Solidoro, C., and Cossarini, G.: A 3-D variational assimilation scheme in coupled transport-biogeochemical models: Forecast of Mediterranean biogeochemical properties, J. Geophys. Res.-Oceans, 119, 200–217, 2013.
Tonani, M., Pinardi, N., Dobricic, S., Pujol, I., and Fratianni, C.: A high-resolution free-surface model of the Mediterranean Sea, Ocean Sci., 4, 1–14, https://doi.org/10.5194/os-4-1-2008, 2008.
Vichi, M. and Masina, S.: Skill assessment of the PELAGOS global ocean biogeochemistry model over the period 1980–2000, Biogeosciences, 6, 2333–2353, https://doi.org/10.5194/bg-6-2333-2009, 2009.
Vichi, M., Lovato, T., Lazzari, P., Cossarini, G., Gutierrez, Mlot E., Mattia, G., Masina, S., McKiver, W. J., Pinardi, N., Solidoro, C., Tedesco, L., and Zavatarelli, M.: The Biogeochemical Flux Model (BFM): Equation Description and User Manual, BFM version 5.1, BFM Report series No. 1, Release 1.1, Bologna, Italy, 104 pp., available at:http://bfm-community.eu, 2015.
Volpe, G., Nardelli, B. B., Cipollini, P., Santoleri, R., and Robinson, I. S.: Seasonal to interannual phytoplankton response to physical processes in the Mediterranean Sea from satellite observations, Remote Sens. Environ., 117, 223–235, 2012.
Wheeler, D. A.: SLOCCount software release 2.26, available at: http://www.dwheeler.com/sloccount/, last access: 25 August, 2015.
Zavatarelli, M., Raicich, F., Bregant, D., Russo, A., and Artegiani, A.: Climatological biogeochemical characteristics of the Adriatic Sea, J. Mar. Syst., 18, 227–263, 1998.
Short summary
The BFMCOUPLER (v1.0) is a coupling scheme that links the MITgcm and BFM models for ocean biogeochemistry simulations. The online coupling is based on an open-source code characterizd by a modular structure. Modularity preserves the potentials of the two models, allowing for a sustainable programming effort to handle future evolutions in the two codes. The BFMCOUPLER code is released along with an idealized problem (a cyclonic gyre in a mid-latitude closed basin).
The BFMCOUPLER (v1.0) is a coupling scheme that links the MITgcm and BFM models for ocean...
