Articles | Volume 9, issue 2
https://doi.org/10.5194/gmd-9-587-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-9-587-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
A global scale mechanistic model of photosynthetic capacity (LUNA V1.0)
A. A. Ali
Earth and Environmental Sciences Division, Los Alamos National Laboratory,
Los Alamos, New Mexico, USA
Department of Civil and Environmental Engineering, University of California
Irvine, Irvine, California, USA
C. Xu
CORRESPONDING AUTHOR
Earth and Environmental Sciences Division, Los Alamos National Laboratory,
Los Alamos, New Mexico, USA
A. Rogers
Environmental and Climate Sciences Department, Brookhaven
National Laboratory, Upton, New York, USA
R. A. Fisher
Climate and Global Dynamics, National Center for Atmospheric Research,
Boulder, Colorado, USA
S. D. Wullschleger
Climate Change Science Institute, Environmental Sciences Division, Oak Ridge
National Laboratory, Oak Ridge, Tennessee, USA
E. C. Massoud
Department of Civil and Environmental Engineering, University of California
Irvine, Irvine, California, USA
J. A. Vrugt
Department of Civil and Environmental Engineering, University of California
Irvine, Irvine, California, USA
Department of Earth System Science, University of California Irvine, Irvine,
California, USA
J. D. Muss
Earth and Environmental Sciences Division, Los Alamos National Laboratory,
Los Alamos, New Mexico, USA
N. G. McDowell
Earth and Environmental Sciences Division, Los Alamos National Laboratory,
Los Alamos, New Mexico, USA
J. B. Fisher
Jet Propulsion Laboratory, California Institute of Technology, Pasadena,
California, USA
P. B. Reich
Department of Forest Resources, University of Minnesota, St. Paul,
Minnesota, USA
Hawkesbury Institute for the Environment, University of Western Sydney,
Penrith, New South Wales, Australia
C. J. Wilson
Earth and Environmental Sciences Division, Los Alamos National Laboratory,
Los Alamos, New Mexico, USA
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We studied how well Earth System Models simulate soil moisture and its connection to plant growth and water use. Using a model evaluation tool and real-world data, we found that models generally perform well at the surface but struggle deeper in the soil. These issues vary by region, especially in colder regions. Our results can help improve future model development and support better predictions of how ecosystems respond to a changing environment.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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Charles E. Miller, Peter C. Griffith, Elizabeth Hoy, Naiara S. Pinto, Yunling Lou, Scott Hensley, Bruce D. Chapman, Jennifer Baltzer, Kazem Bakian-Dogaheh, W. Robert Bolton, Laura Bourgeau-Chavez, Richard H. Chen, Byung-Hun Choe, Leah K. Clayton, Thomas A. Douglas, Nancy French, Jean E. Holloway, Gang Hong, Lingcao Huang, Go Iwahana, Liza Jenkins, John S. Kimball, Tatiana Loboda, Michelle Mack, Philip Marsh, Roger J. Michaelides, Mahta Moghaddam, Andrew Parsekian, Kevin Schaefer, Paul R. Siqueira, Debjani Singh, Alireza Tabatabaeenejad, Merritt Turetsky, Ridha Touzi, Elizabeth Wig, Cathy J. Wilson, Paul Wilson, Stan D. Wullschleger, Yonghong Yi, Howard A. Zebker, Yu Zhang, Yuhuan Zhao, and Scott J. Goetz
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NASA’s Arctic Boreal Vulnerability Experiment (ABoVE) conducted airborne synthetic aperture radar (SAR) surveys of over 120 000 km2 in Alaska and northwestern Canada during 2017, 2018, 2019, and 2022. This paper summarizes those results and provides links to details on ~ 80 individual flight lines. This paper is presented as a guide to enable interested readers to fully explore the ABoVE L- and P-band SAR data.
Junyan Ding, Polly Buotte, Roger Bales, Bradley Christoffersen, Rosie A. Fisher, Michael Goulden, Ryan Knox, Lara Kueppers, Jacquelyn Shuman, Chonggang Xu, and Charles D. Koven
Biogeosciences, 20, 4491–4510, https://doi.org/10.5194/bg-20-4491-2023, https://doi.org/10.5194/bg-20-4491-2023, 2023
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We used a vegetation model to investigate how the different combinations of plant rooting depths and the sensitivity of leaves and stems to drying lead to differential responses of a pine forest to drought conditions in California, USA. We found that rooting depths are the strongest control in that ecosystem. Deep roots allow trees to fully utilize the soil water during a normal year but result in prolonged depletion of soil moisture during a severe drought and hence a high tree mortality risk.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
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We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Nathan Alec Conroy, Jeffrey M. Heikoop, Emma Lathrop, Dea Musa, Brent D. Newman, Chonggang Xu, Rachael E. McCaully, Carli A. Arendt, Verity G. Salmon, Amy Breen, Vladimir Romanovsky, Katrina E. Bennett, Cathy J. Wilson, and Stan D. Wullschleger
The Cryosphere, 17, 3987–4006, https://doi.org/10.5194/tc-17-3987-2023, https://doi.org/10.5194/tc-17-3987-2023, 2023
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This study combines field observations, non-parametric statistical analyses, and thermodynamic modeling to characterize the environmental causes of the spatial variability in soil pore water solute concentrations across two Arctic catchments with varying extents of permafrost. Vegetation type, soil moisture and redox conditions, weathering and hydrologic transport, and mineral solubility were all found to be the primary drivers of the existing spatial variability of some soil pore water solutes.
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, and Chaopeng Shen
Biogeosciences, 20, 2671–2692, https://doi.org/10.5194/bg-20-2671-2023, https://doi.org/10.5194/bg-20-2671-2023, 2023
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Photosynthesis is critical for life and has been affected by the changing climate. Many parameters come into play while modeling, but traditional calibration approaches face many issues. Our framework trains coupled neural networks to provide parameters to a photosynthesis model. Using big data, we independently found parameter values that were correlated with those in the literature while giving higher correlation and reduced biases in photosynthesis rates.
Elias C. Massoud, Lauren Andrews, Rolf Reichle, Andrea Molod, Jongmin Park, Sophie Ruehr, and Manuela Girotto
Earth Syst. Dynam., 14, 147–171, https://doi.org/10.5194/esd-14-147-2023, https://doi.org/10.5194/esd-14-147-2023, 2023
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In this study, we benchmark the forecast skill of the NASA’s Goddard Earth Observing System subseasonal-to-seasonal (GEOS-S2S version 2) hydrometeorological forecasts in the High Mountain Asia (HMA) region. Hydrometeorological forecast skill is dependent on the forecast lead time, the memory of the variable within the physical system, and the validation dataset used. Overall, these results benchmark the GEOS-S2S system’s ability to forecast HMA hydrometeorology on the seasonal timescale.
Adrienne M. Wootten, Elias C. Massoud, Duane E. Waliser, and Huikyo Lee
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Katrina E. Bennett, Greta Miller, Robert Busey, Min Chen, Emma R. Lathrop, Julian B. Dann, Mara Nutt, Ryan Crumley, Shannon L. Dillard, Baptiste Dafflon, Jitendra Kumar, W. Robert Bolton, Cathy J. Wilson, Colleen M. Iversen, and Stan D. Wullschleger
The Cryosphere, 16, 3269–3293, https://doi.org/10.5194/tc-16-3269-2022, https://doi.org/10.5194/tc-16-3269-2022, 2022
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In the Arctic and sub-Arctic, climate shifts are changing ecosystems, resulting in alterations in snow, shrubs, and permafrost. Thicker snow under shrubs can lead to warmer permafrost because deeper snow will insulate the ground from the cold winter. In this paper, we use modeling to characterize snow to better understand the drivers of snow distribution. Eventually, this work will be used to improve models used to study future changes in Arctic and sub-Arctic snow patterns.
Qianyu Li, Shawn P. Serbin, Julien Lamour, Kenneth J. Davidson, Kim S. Ely, and Alistair Rogers
Geosci. Model Dev., 15, 4313–4329, https://doi.org/10.5194/gmd-15-4313-2022, https://doi.org/10.5194/gmd-15-4313-2022, 2022
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Stomatal conductance is the rate of water release from leaves’ pores. We implemented an optimal stomatal conductance model in a vegetation model. We then tested and compared it with the existing empirical model in terms of model responses to key environmental variables. We also evaluated the model with measurements at a tropical forest site. Our study suggests that the parameterization of conductance models and current model response to drought are the critical areas for improving models.
Rachael E. McCaully, Carli A. Arendt, Brent D. Newman, Verity G. Salmon, Jeffrey M. Heikoop, Cathy J. Wilson, Sanna Sevanto, Nathan A. Wales, George B. Perkins, Oana C. Marina, and Stan D. Wullschleger
The Cryosphere, 16, 1889–1901, https://doi.org/10.5194/tc-16-1889-2022, https://doi.org/10.5194/tc-16-1889-2022, 2022
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Elias C. Massoud, A. Anthony Bloom, Marcos Longo, John T. Reager, Paul A. Levine, and John R. Worden
Hydrol. Earth Syst. Sci., 26, 1407–1423, https://doi.org/10.5194/hess-26-1407-2022, https://doi.org/10.5194/hess-26-1407-2022, 2022
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The water balance on river basin scales depends on a number of soil physical processes. Gaining information on these quantities using observations is a key step toward improving the skill of land surface hydrology models. In this study, we use data from the Gravity Recovery and Climate Experiment (NASA-GRACE) to inform and constrain these hydrologic processes. We show that our model is able to simulate the land hydrologic cycle for a watershed in the Amazon from January 2003 to December 2012.
Elchin E. Jafarov, Daniil Svyatsky, Brent Newman, Dylan Harp, David Moulton, and Cathy Wilson
The Cryosphere, 16, 851–862, https://doi.org/10.5194/tc-16-851-2022, https://doi.org/10.5194/tc-16-851-2022, 2022
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Recent research indicates the importance of lateral transport of dissolved carbon in the polygonal tundra, suggesting that the freeze-up period could further promote lateral carbon transport. We conducted subsurface tracer simulations on high-, flat-, and low-centered polygons to test the importance of the freeze–thaw cycle and freeze-up time for tracer mobility. Our findings illustrate the impact of hydraulic and thermal gradients on tracer mobility, as well as of the freeze-up time.
Karis J. McFarlane, Heather M. Throckmorton, Jeffrey M. Heikoop, Brent D. Newman, Alexandra L. Hedgpeth, Marisa N. Repasch, Thomas P. Guilderson, and Cathy J. Wilson
Biogeosciences, 19, 1211–1223, https://doi.org/10.5194/bg-19-1211-2022, https://doi.org/10.5194/bg-19-1211-2022, 2022
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Planetary warming is increasing seasonal thaw of permafrost, making this extensive old carbon stock vulnerable. In northern Alaska, we found more and older dissolved organic carbon in small drainages later in summer as more permafrost was exposed by deepening thaw. Younger and older carbon did not differ in chemical indicators related to biological lability suggesting this carbon can cycle through aquatic systems and contribute to greenhouse gas emissions as warming increases permafrost thaw.
Dylan R. Harp, Vitaly Zlotnik, Charles J. Abolt, Bob Busey, Sofia T. Avendaño, Brent D. Newman, Adam L. Atchley, Elchin Jafarov, Cathy J. Wilson, and Katrina E. Bennett
The Cryosphere, 15, 4005–4029, https://doi.org/10.5194/tc-15-4005-2021, https://doi.org/10.5194/tc-15-4005-2021, 2021
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Polygon-shaped landforms present in relatively flat Arctic tundra result in complex landscape-scale water drainage. The drainage pathways and the time to transition from inundated conditions to drained have important implications for heat and carbon transport. Using fundamental hydrologic principles, we investigate the drainage pathways and timing of individual polygons, providing insights into the effects of polygon geometry and preferential flow direction on drainage pathways and timing.
Polly C. Buotte, Charles D. Koven, Chonggang Xu, Jacquelyn K. Shuman, Michael L. Goulden, Samuel Levis, Jessica Katz, Junyan Ding, Wu Ma, Zachary Robbins, and Lara M. Kueppers
Biogeosciences, 18, 4473–4490, https://doi.org/10.5194/bg-18-4473-2021, https://doi.org/10.5194/bg-18-4473-2021, 2021
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We present an approach for ensuring the definitions of plant types in dynamic vegetation models are connected to the underlying ecological processes controlling community composition. Our approach can be applied regionally or globally. Robust resolution of community composition will allow us to use these models to address important questions related to future climate and management effects on plant community composition, structure, carbon storage, and feedbacks within the Earth system.
Wu Ma, Lu Zhai, Alexandria Pivovaroff, Jacquelyn Shuman, Polly Buotte, Junyan Ding, Bradley Christoffersen, Ryan Knox, Max Moritz, Rosie A. Fisher, Charles D. Koven, Lara Kueppers, and Chonggang Xu
Biogeosciences, 18, 4005–4020, https://doi.org/10.5194/bg-18-4005-2021, https://doi.org/10.5194/bg-18-4005-2021, 2021
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We use a hydrodynamic demographic vegetation model to estimate live fuel moisture dynamics of chaparral shrubs, a dominant vegetation type in fire-prone southern California. Our results suggest that multivariate climate change could cause a significant net reduction in live fuel moisture and thus exacerbate future wildfire danger in chaparral shrub systems.
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Short summary
We have developed a mechanistic model of leaf utilization of nitrogen for assimilation (LUNA V1.0) to predict the photosynthetic capacities at the global scale based on the optimization of key leaf-level metabolic processes. LUNA model predicts that future climatic changes would mostly affect plant photosynthetic capabilities in high-latitude regions and that Earth system models using fixed photosynthetic capabilities are likely to substantially overestimate future global photosynthesis.
We have developed a mechanistic model of leaf utilization of nitrogen for assimilation (LUNA...