Articles | Volume 8, issue 10
Geosci. Model Dev., 8, 3119–3130, 2015
https://doi.org/10.5194/gmd-8-3119-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue: Nucleus for European Modelling of the Ocean - NEMO
Development and technical paper 06 Oct 2015
Development and technical paper | 06 Oct 2015
Increasing vertical mixing to reduce Southern Ocean deep convection in NEMO3.4
C. Heuzé et al.
Related authors
Céline Heuzé
Ocean Sci., 17, 59–90, https://doi.org/10.5194/os-17-59-2021, https://doi.org/10.5194/os-17-59-2021, 2021
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Dense waters sinking by Antarctica and in the North Atlantic control global ocean currents and carbon storage. We need to know how these change with climate change, and thus we need accurate climate models. Here we show that dense water sinking in the latest models is better than in the previous ones, but there is still too much water sinking. This impacts how well models represent the deep ocean density and the deep currents globally. We also suggest ways to improve the models.
Amy Solomon, Céline Heuzé, Benjamin Rabe, Sheldon Bacon, Laurent Bertino, Patrick Heimbach, Jun Inoue, Doroteaciro Iovino, Ruth Mottram, Xiangdong Zhang, Yevgeny Aksenov, Ronan McAdam, An Nguyen, Roshin P. Raj, and Han Tang
Ocean Sci. Discuss., https://doi.org/10.5194/os-2020-113, https://doi.org/10.5194/os-2020-113, 2020
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Freshwater in the Arctic Ocean plays a critical role in the global climate system by impacting ocean circulations, stratification, mixing, and emergent regimes. In this review paper we assess how the Arctic freshwater budget in the 2010s has changed relative to the 2000s. Estimates from satellites and reanalyses show a stabilization in the 2010s due to an increased compensation between a freshening of the Beaufort Gyre and a reduction in freshwater in the Amerasian and Eurasian basins.
Céline Heuzé and Adriano Lemos
The Cryosphere Discuss., https://doi.org/10.5194/tc-2020-123, https://doi.org/10.5194/tc-2020-123, 2020
Preprint under review for TC
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For navigation or science planning, knowing when sea ice will open in advance is a prerequisite. Yet to date routine spaceborne microwave observations of sea ice are unable to do so. We here present the first method based on spaceborne infrared that can forecast an opening several days ahead. We develop it specifically for the Weddell Polynya, a large hole in the Antarctic winter ice cover that unexpectedly reopened for the first time in forty years in 2016, and determine why the polynya opened.
Lovisa Waldrop Bergman and Céline Heuzé
Ocean Sci. Discuss., https://doi.org/10.5194/os-2018-122, https://doi.org/10.5194/os-2018-122, 2018
Preprint withdrawn
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How to force a model where no suitable observation exists? We here determine using MITgcm the relative influence of the choice of wind, initial hydrography, and sea ice cover on the resulting ocean circulation in Nares Strait, northwest Greenland. The input with the largest effect is the density gradient in the upper layer. We argue that it should be prioritised over high resolution wind for cost-effective simulations of the Arctic straits, crucial for modelling the Arctic freshwater export.
Céline Heuzé
Ocean Sci., 13, 609–622, https://doi.org/10.5194/os-13-609-2017, https://doi.org/10.5194/os-13-609-2017, 2017
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Climate models are the best tool available to estimate the ocean’s response to climate change, notably sea level rise. To trust the models, we need to compare them to the real ocean in key areas. Here we do so in the North Atlantic, where deep waters form, and show that inaccurate location, extent and frequency of the formation impact the representation of the global ocean circulation and how much heat enters the Arctic. We also study the causes of the errors in order to improve future models.
Mathew A. Stiller-Reeve, Céline Heuzé, William T. Ball, Rachel H. White, Gabriele Messori, Karin van der Wiel, Iselin Medhaug, Annemarie H. Eckes, Amee O'Callaghan, Mike J. Newland, Sian R. Williams, Matthew Kasoar, Hella Elisa Wittmeier, and Valerie Kumer
Hydrol. Earth Syst. Sci., 20, 2965–2973, https://doi.org/10.5194/hess-20-2965-2016, https://doi.org/10.5194/hess-20-2965-2016, 2016
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Scientific writing must improve and the key to long-term improvement of scientific writing lies with the early-career scientist (ECS). We introduce the ClimateSnack project, which aims to motivate ECSs to start writing groups around the world to improve their skills together. Writing groups offer many benefits but can be a challenge to keep going. Several ClimateSnack writing groups formed, and this paper examines why some of the groups flourished and others dissolved.
Adam T. Blaker, Manoj Joshi, Bablu Sinha, David P. Stevens, Robin S. Smith, and Joël J.-M. Hirschi
Geosci. Model Dev., 14, 275–293, https://doi.org/10.5194/gmd-14-275-2021, https://doi.org/10.5194/gmd-14-275-2021, 2021
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FORTE 2.0 is a flexible coupled atmosphere–ocean general circulation model that can be run on modest hardware. We present two 2000-year simulations which show that FORTE 2.0 is capable of producing a stable climate. Earlier versions of FORTE were used for a wide range of studies, ranging from aquaplanet configurations to investigating the cold European winters of 2009–2010. This paper introduces the updated model for which the code and configuration are now publicly available.
Céline Heuzé
Ocean Sci., 17, 59–90, https://doi.org/10.5194/os-17-59-2021, https://doi.org/10.5194/os-17-59-2021, 2021
Short summary
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Dense waters sinking by Antarctica and in the North Atlantic control global ocean currents and carbon storage. We need to know how these change with climate change, and thus we need accurate climate models. Here we show that dense water sinking in the latest models is better than in the previous ones, but there is still too much water sinking. This impacts how well models represent the deep ocean density and the deep currents globally. We also suggest ways to improve the models.
Jack Giddings, Karen J. Heywood, Adrian J. Matthews, Manoj M. Joshi, Benjamin G. M. Webber, Alejandra Sanchez-Franks, Brian A. King, and Puthenveettil N. Vinayachandran
Ocean Sci. Discuss., https://doi.org/10.5194/os-2020-125, https://doi.org/10.5194/os-2020-125, 2021
Preprint under review for OS
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Little is known about the impact of chlorophyll on SST in the Bay of Bengal (BoB). Solar irradiance measured by an ocean glider and three Argo floats are used to determine the effect of chlorophyll on BoB SST during the 2016 summer monsoon. The Southwest Monsoon Current has high chlorophyll concentrations (~ 0.5 mg m−3) and shallow solar penetration depths (~ 14 m). Ocean mixed layer model simulations show that SST increases by 0.35 °C month−1 with the potential to influence monsoon rainfall.
Amy Solomon, Céline Heuzé, Benjamin Rabe, Sheldon Bacon, Laurent Bertino, Patrick Heimbach, Jun Inoue, Doroteaciro Iovino, Ruth Mottram, Xiangdong Zhang, Yevgeny Aksenov, Ronan McAdam, An Nguyen, Roshin P. Raj, and Han Tang
Ocean Sci. Discuss., https://doi.org/10.5194/os-2020-113, https://doi.org/10.5194/os-2020-113, 2020
Preprint under review for OS
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Freshwater in the Arctic Ocean plays a critical role in the global climate system by impacting ocean circulations, stratification, mixing, and emergent regimes. In this review paper we assess how the Arctic freshwater budget in the 2010s has changed relative to the 2000s. Estimates from satellites and reanalyses show a stabilization in the 2010s due to an increased compensation between a freshening of the Beaufort Gyre and a reduction in freshwater in the Amerasian and Eurasian basins.
Jack Giddings, Adrian J. Matthews, Nicholas P. Klingaman, Karen J. Heywood, Manoj Joshi, and Benjamin G. M. Webber
Weather Clim. Dynam., 1, 635–655, https://doi.org/10.5194/wcd-1-635-2020, https://doi.org/10.5194/wcd-1-635-2020, 2020
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The impact of chlorophyll on the southwest monsoon is unknown. Here, seasonally varying chlorophyll in the Bay of Bengal was imposed in a general circulation model coupled to an ocean mixed layer model. The SST increases by 0.5 °C in response to chlorophyll forcing and shallow mixed layer depths in coastal regions during the inter-monsoon. Precipitation increases significantly to 3 mm d-1 across Myanmar during June and over northeast India and Bangladesh during October, decreasing model bias.
Céline Heuzé and Adriano Lemos
The Cryosphere Discuss., https://doi.org/10.5194/tc-2020-123, https://doi.org/10.5194/tc-2020-123, 2020
Preprint under review for TC
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For navigation or science planning, knowing when sea ice will open in advance is a prerequisite. Yet to date routine spaceborne microwave observations of sea ice are unable to do so. We here present the first method based on spaceborne infrared that can forecast an opening several days ahead. We develop it specifically for the Weddell Polynya, a large hole in the Antarctic winter ice cover that unexpectedly reopened for the first time in forty years in 2016, and determine why the polynya opened.
Adam W. Bateson, Daniel L. Feltham, David Schröder, Lucia Hosekova, Jeff K. Ridley, and Yevgeny Aksenov
The Cryosphere, 14, 403–428, https://doi.org/10.5194/tc-14-403-2020, https://doi.org/10.5194/tc-14-403-2020, 2020
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The Arctic sea ice cover has been observed to be decreasing, particularly in summer. We use numerical models to gain insight into processes controlling its seasonal and decadal evolution. Sea ice is made of pieces of ice called floes. Previous models have set these floes to be the same size, which is not supported by observations. In this study we show that accounting for variable floe size reveals the importance of sea ice regions close to the open ocean in driving seasonal retreat of sea ice.
Malcolm J. Roberts, Alex Baker, Ed W. Blockley, Daley Calvert, Andrew Coward, Helene T. Hewitt, Laura C. Jackson, Till Kuhlbrodt, Pierre Mathiot, Christopher D. Roberts, Reinhard Schiemann, Jon Seddon, Benoît Vannière, and Pier Luigi Vidale
Geosci. Model Dev., 12, 4999–5028, https://doi.org/10.5194/gmd-12-4999-2019, https://doi.org/10.5194/gmd-12-4999-2019, 2019
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We investigate the role that horizontal grid spacing plays in global coupled climate model simulations, together with examining the efficacy of a new design of simulation experiments that is being used by the community for multi-model comparison. We found that finer grid spacing in both atmosphere and ocean–sea ice models leads to a general reduction in bias compared to observations, and that once eddies in the ocean are resolved, several key climate processes are greatly improved.
Alex West, Mat Collins, Ed Blockley, Jeff Ridley, and Alejandro Bodas-Salcedo
The Cryosphere, 13, 2001–2022, https://doi.org/10.5194/tc-13-2001-2019, https://doi.org/10.5194/tc-13-2001-2019, 2019
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This study presents a framework for examining the causes of model errors in Arctic sea ice volume, using HadGEM2-ES as a case study. Simple models are used to estimate how much of the error in energy arriving at the ice surface is due to error in key Arctic climate variables. The method quantifies how each variable affects sea ice volume balance and shows that for HadGEM2-ES an annual mean low bias in ice thickness is likely due to errors in surface melt onset.
Lovisa Waldrop Bergman and Céline Heuzé
Ocean Sci. Discuss., https://doi.org/10.5194/os-2018-122, https://doi.org/10.5194/os-2018-122, 2018
Preprint withdrawn
Short summary
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How to force a model where no suitable observation exists? We here determine using MITgcm the relative influence of the choice of wind, initial hydrography, and sea ice cover on the resulting ocean circulation in Nares Strait, northwest Greenland. The input with the largest effect is the density gradient in the upper layer. We argue that it should be prioritised over high resolution wind for cost-effective simulations of the Arctic straits, crucial for modelling the Arctic freshwater export.
Jeff K. Ridley and Edward W. Blockley
The Cryosphere, 12, 3355–3360, https://doi.org/10.5194/tc-12-3355-2018, https://doi.org/10.5194/tc-12-3355-2018, 2018
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The climate change conference held in Paris in 2016 made a commitment to limiting global-mean warming since the pre-industrial era to well below 2 °C and to pursue efforts to limit the warming to 1.5 °C. Since global warming is already at 1 °C, the 1.5 °C can only be achieved at considerable cost. It is thus important to assess the risks associated with the higher target. This paper shows that the decline of Arctic sea ice, and associated impacts, can only be halted with the 1.5 °C target.
David Storkey, Adam T. Blaker, Pierre Mathiot, Alex Megann, Yevgeny Aksenov, Edward W. Blockley, Daley Calvert, Tim Graham, Helene T. Hewitt, Patrick Hyder, Till Kuhlbrodt, Jamie G. L. Rae, and Bablu Sinha
Geosci. Model Dev., 11, 3187–3213, https://doi.org/10.5194/gmd-11-3187-2018, https://doi.org/10.5194/gmd-11-3187-2018, 2018
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We document the latest version of the shared UK global configuration of the
NEMO ocean model. This configuration will be used as part of the climate
models for the UK contribution to the IPCC 6th Assessment Report.
30-year integrations forced with atmospheric forcing show that the new
configurations have an improved simulation in the Southern Ocean with the
near-surface temperatures and salinities and the sea ice all matching the
observations more closely.
Reiner Onken, Heinz-Volker Fiekas, Laurent Beguery, Ines Borrione, Andreas Funk, Michael Hemming, Jaime Hernandez-Lasheras, Karen J. Heywood, Jan Kaiser, Michaela Knoll, Baptiste Mourre, Paolo Oddo, Pierre-Marie Poulain, Bastien Y. Queste, Aniello Russo, Kiminori Shitashima, Martin Siderius, and Elizabeth Thorp Küsel
Ocean Sci., 14, 321–335, https://doi.org/10.5194/os-14-321-2018, https://doi.org/10.5194/os-14-321-2018, 2018
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In June 2014, high-resolution oceanographic data were collected in the
western Mediterranean Sea by two research vessels, 11 gliders, moored
instruments, drifters, and one profiling float. The objective
of this article is to provide an overview of the data set which
is utilised by various ongoing studies, focusing on (i) water masses and circulation, (ii) operational forecasting, (iii) data assimilation, (iv) variability of the ocean, and (v) new payloads
for gliders.
Peter M. F. Sheehan, Barbara Berx, Alejandro Gallego, Rob A. Hall, Karen J. Heywood, Sarah L. Hughes, and Bastien Y. Queste
Ocean Sci., 14, 225–236, https://doi.org/10.5194/os-14-225-2018, https://doi.org/10.5194/os-14-225-2018, 2018
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We calculate tidal velocities using observations of ocean currents collected by an underwater glider. We use these velocities to investigate the location of sharp boundaries between water masses in shallow seas. Narrow currents along these boundaries are important transport pathways around shallow seas for pollutants and organisms. Tides are an important control on boundary location in summer, but seawater salt concentration can also influence boundary location, especially in winter.
Jeff K. Ridley, Edward W. Blockley, Ann B. Keen, Jamie G. L. Rae, Alex E. West, and David Schroeder
Geosci. Model Dev., 11, 713–723, https://doi.org/10.5194/gmd-11-713-2018, https://doi.org/10.5194/gmd-11-713-2018, 2018
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The sea ice component of the Met Office coupled climate model, HadGEM3-GC3.1, is presented and evaluated. We determine that the mean state of the sea ice is well reproduced for the Arctic; however, a warm sea surface temperature bias over the Southern Ocean results in a low Antarctic sea ice cover.
Jamie G. L. Rae, Alexander D. Todd, Edward W. Blockley, and Jeff K. Ridley
The Cryosphere, 11, 3023–3034, https://doi.org/10.5194/tc-11-3023-2017, https://doi.org/10.5194/tc-11-3023-2017, 2017
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Several studies have highlighted links between Arctic summer storms and September sea ice extent in observations. Here we use model and reanalysis data to investigate the sensitivity of such links to the analytical methods used, in order to determine their robustness. The links were found to depend on the resolution of the model and dataset, the method used to identify storms and the time period used in the analysis. We therefore recommend caution when interpreting the results of such studies.
Céline Heuzé
Ocean Sci., 13, 609–622, https://doi.org/10.5194/os-13-609-2017, https://doi.org/10.5194/os-13-609-2017, 2017
Short summary
Short summary
Climate models are the best tool available to estimate the ocean’s response to climate change, notably sea level rise. To trust the models, we need to compare them to the real ocean in key areas. Here we do so in the North Atlantic, where deep waters form, and show that inaccurate location, extent and frequency of the formation impact the representation of the global ocean circulation and how much heat enters the Arctic. We also study the causes of the errors in order to improve future models.
Michael P. Hemming, Jan Kaiser, Karen J. Heywood, Dorothee C.E. Bakker, Jacqueline Boutin, Kiminori Shitashima, Gareth Lee, Oliver Legge, and Reiner Onken
Ocean Sci., 13, 427–442, https://doi.org/10.5194/os-13-427-2017, https://doi.org/10.5194/os-13-427-2017, 2017
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Underwater gliders are useful platforms for monitoring the world oceans at a high resolution. An experimental pH sensor was attached to an underwater glider in the Mediterranean Sea, which is an important carbon sink region. Comparing measurements from the glider with those obtained from a ship indicated that there were issues with the experimental pH sensor. Correcting for these issues enabled us to look at pH variability in the area related to biomass abundance and physical water properties.
Imke Grefe, Sophie Fielding, Karen J. Heywood, and Jan Kaiser
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-73, https://doi.org/10.5194/bg-2017-73, 2017
Revised manuscript not accepted
Mathew A. Stiller-Reeve, Céline Heuzé, William T. Ball, Rachel H. White, Gabriele Messori, Karin van der Wiel, Iselin Medhaug, Annemarie H. Eckes, Amee O'Callaghan, Mike J. Newland, Sian R. Williams, Matthew Kasoar, Hella Elisa Wittmeier, and Valerie Kumer
Hydrol. Earth Syst. Sci., 20, 2965–2973, https://doi.org/10.5194/hess-20-2965-2016, https://doi.org/10.5194/hess-20-2965-2016, 2016
Short summary
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Scientific writing must improve and the key to long-term improvement of scientific writing lies with the early-career scientist (ECS). We introduce the ClimateSnack project, which aims to motivate ECSs to start writing groups around the world to improve their skills together. Writing groups offer many benefits but can be a challenge to keep going. Several ClimateSnack writing groups formed, and this paper examines why some of the groups flourished and others dissolved.
Heather Cannaby, Matthew D. Palmer, Tom Howard, Lucy Bricheno, Daley Calvert, Justin Krijnen, Richard Wood, Jonathan Tinker, Chris Bunney, James Harle, Andrew Saulter, Clare O'Neill, Clare Bellingham, and Jason Lowe
Ocean Sci., 12, 613–632, https://doi.org/10.5194/os-12-613-2016, https://doi.org/10.5194/os-12-613-2016, 2016
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The Singapore government commissioned a modelling study of regional projections of changes in (i) long-term mean sea level and (ii) the frequency of extreme storm surge and wave events. We find that changes to long-term mean sea level constitute the dominant signal of change to the projected inundation risk for Singapore during the 21st century, these being 0.52 m(0.74 m) under the RCP 4.5(8.5) scenario.
J. K. Ridley, R. A. Wood, A. B. Keen, E. Blockley, and J. A. Lowe
The Cryosphere Discuss., https://doi.org/10.5194/tc-2016-28, https://doi.org/10.5194/tc-2016-28, 2016
Revised manuscript has not been submitted
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The internal variability in model projections of Arctic sea ice extent is high. As a consequence an ensemble of projections from a single model can show considerable scatter in the range of dates for an "ice-free" Arctic. This paper investigates if the scatter can be reduced for a variety of definitions of "ice-free". Daily GCM data reveals that only a high emissions scenario results in the optimal definition of five conservative years in with ice extent is below one million square kilometer.
Bastien Y. Queste, Liam Fernand, Timothy D. Jickells, Karen J. Heywood, and Andrew J. Hind
Biogeosciences, 13, 1209–1222, https://doi.org/10.5194/bg-13-1209-2016, https://doi.org/10.5194/bg-13-1209-2016, 2016
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In stratified shelf seas, physical and biological conditions can lead to seasonal oxygen depletion when consumption exceeds supply. An ocean glider obtained a high-resolution 3-day data set of biochemical and physical properties in the central North Sea. The data revealed very high oxygen consumption rates, far exceeding previously reported rates. A consumption–supply oxygen budget indicates a localized or short-lived resuspension event causing rapid remineralization of benthic organic matter.
J. G. L. Rae, H. T. Hewitt, A. B. Keen, J. K. Ridley, A. E. West, C. M. Harris, E. C. Hunke, and D. N. Walters
Geosci. Model Dev., 8, 2221–2230, https://doi.org/10.5194/gmd-8-2221-2015, https://doi.org/10.5194/gmd-8-2221-2015, 2015
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The paper presents a new sea ice configuration, GSI6.0, in the Met Office coupled atmosphere-ocean-ice model. Differences in the sea ice from a previous configuration (GSI4.0) are explained in the context of a previously published sensitivity study. In summer, Arctic sea ice is thicker and more extensive than in GSI4.0, bringing it closer to the observationally derived data sets. In winter, the Arctic ice is thicker but less extensive than in GSI4.0.
T. Howard, A. K. Pardaens, J. L. Bamber, J. Ridley, G. Spada, R. T. W. L. Hurkmans, J. A. Lowe, and D. Vaughan
Ocean Sci., 10, 473–483, https://doi.org/10.5194/os-10-473-2014, https://doi.org/10.5194/os-10-473-2014, 2014
T. Howard, J. Ridley, A. K. Pardaens, R. T. W. L. Hurkmans, A. J. Payne, R. H. Giesen, J. A. Lowe, J. L. Bamber, T. L. Edwards, and J. Oerlemans
Ocean Sci., 10, 485–500, https://doi.org/10.5194/os-10-485-2014, https://doi.org/10.5194/os-10-485-2014, 2014
A. Megann, D. Storkey, Y. Aksenov, S. Alderson, D. Calvert, T. Graham, P. Hyder, J. Siddorn, and B. Sinha
Geosci. Model Dev., 7, 1069–1092, https://doi.org/10.5194/gmd-7-1069-2014, https://doi.org/10.5194/gmd-7-1069-2014, 2014
Related subject area
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Multi-grid algorithm for passive tracer transport in the NEMO ocean circulation model: a case study with the NEMO OGCM (version 3.6)
Introducing LAB60: A 1∕60° NEMO 3.6 numerical simulation of the Labrador Sea
Development of an atmosphere–ocean coupled operational forecast model for the Maritime Continent: Part 1 – Evaluation of ocean forecasts
Impact of horizontal resolution on global ocean–sea ice model simulations based on the experimental protocols of the Ocean Model Intercomparison Project phase 2 (OMIP-2)
CSIRO Environmental Modelling Suite (EMS): scientific description of the optical and biogeochemical models (vB3p0)
Performance of offline passive tracer advection in ROMS (v3.6, revision 904)
Constraining the response of phytoplankton to zooplankton grazing and photo-acclimation in a temperate shelf sea with a 1-D model – towards S2P3 v8.0
Advanced parallel implementation of the coupled ocean-ice model FEMAO with load balancing
The Regional Ice Ocean Prediction System v2: a pan-Canadian ocean analysis system
Doppio – a ROMS (v3.6)-based circulation model for the Mid-Atlantic Bight and Gulf of Maine: configuration and comparison to integrated coastal observing network observations
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Representation of the Denmark Strait overflow in a z-coordinate eddying configuration of the NEMO (v3.6) ocean model: resolution and parameter impacts
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Tracking water masses using passive-tracer transport in NEMO v3.4 with NEMOTAM: application to North Atlantic Deep Water and North Atlantic Subtropical Mode Water
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DINCAE 1.0: a convolutional neural network with error estimates to reconstruct sea surface temperature satellite observations
Mitigation of model bias influences on wave data assimilation with multiple assimilation systems using WaveWatch III v5.16 and SWAN v41.20
MOMSO 1.0 – an eddying Southern Ocean model configuration with fairly equilibrated natural carbon
Simulating barrier island response to sea level rise with the barrier island and inlet environment (BRIE) model v1.0
Dealing with discontinuous meteorological forcing in operational ocean modelling: a case study using ECMWF-IFS and GETM (v2.5)
The Parcels v2.0 Lagrangian framework: new field interpolation schemes
The INALT family – a set of high-resolution nests for the Agulhas Current system within global NEMO ocean/sea-ice configurations
Sensitivity of deep ocean biases to horizontal resolution in prototype CMIP6 simulations with AWI-CM1.0
OceanMesh2D 1.0: MATLAB-based software for two-dimensional unstructured mesh generation in coastal ocean modeling
Ocean carbon and nitrogen isotopes in CSIRO Mk3L-COAL version 1.0: a tool for palaeoceanographic research
A high-resolution biogeochemical model (ROMS 3.4 + bio_Fennel) of the East Australian Current system
Nemo-Nordic 1.0: a NEMO-based ocean model for the Baltic and North seas – research and operational applications
Ecological ReGional Ocean Model with vertically resolved sediments (ERGOM SED 1.0): coupling benthic and pelagic biogeochemistry of the south-western Baltic Sea
Reanalysis of the PacIOOS Hawaiian Island Ocean Forecast System, an implementation of the Regional Ocean Modeling System v3.6
Thetis coastal ocean model: discontinuous Galerkin discretization for the three-dimensional hydrostatic equations
Data assimilation cycle length and observation impact in mesoscale ocean forecasting
Verification of the mixed layer depth in the OceanMAPS operational forecast model for Austral autumn
A global scavenging and circulation ocean model of thorium-230 and protactinium-231 with improved particle dynamics (NEMO–ProThorP 0.1)
Veros v0.1 – a fast and versatile ocean simulator in pure Python
Cohesive and mixed sediment in the Regional Ocean Modeling System (ROMS v3.6) implemented in the Coupled Ocean–Atmosphere–Wave–Sediment Transport Modeling System (COAWST r1234)
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The Oceanographic Multipurpose Software Environment (OMUSE v1.0)
The CO5 configuration of the 7 km Atlantic Margin Model: large-scale biases and sensitivity to forcing, physics options and vertical resolution
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The iFlow modelling framework v2.4: a modular idealized process-based model for flow and transport in estuaries
Katixa Lajaunie-Salla, Frédéric Diaz, Cathy Wimart-Rousseau, Thibaut Wagener, Dominique Lefèvre, Christophe Yohia, Irène Xueref-Remy, Brian Nathan, Alexandre Armengaud, and Christel Pinazo
Geosci. Model Dev., 14, 295–321, https://doi.org/10.5194/gmd-14-295-2021, https://doi.org/10.5194/gmd-14-295-2021, 2021
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A biogeochemical model of planktonic food webs including a carbonate balance module is applied in the Bay of Marseille (France) to represent the carbon marine cycle expected to change in the future owing to significant increases in anthropogenic emissions of CO2. The model correctly simulates the ranges and seasonal dynamics of most variables of the carbonate system (pH). This study shows that external physical forcings have an important impact on the carbonate equilibrium in this coastal area.
Tor Nordam and Rodrigo Duran
Geosci. Model Dev., 13, 5935–5957, https://doi.org/10.5194/gmd-13-5935-2020, https://doi.org/10.5194/gmd-13-5935-2020, 2020
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In applied oceanography, a common task is to calculate the trajectory of objects floating at the sea surface or submerged in the water. We have investigated different numerical methods for doing such calculations and discuss the benefits and challenges of some common methods. We then propose a small change to some common methods that make them more efficient for this particular application. This will allow researchers to obtain more accurate answers with fewer computer resources.
Clément Bricaud, Julien Le Sommer, Gurvan Madec, Christophe Calone, Julie Deshayes, Christian Ethe, Jérôme Chanut, and Marina Levy
Geosci. Model Dev., 13, 5465–5483, https://doi.org/10.5194/gmd-13-5465-2020, https://doi.org/10.5194/gmd-13-5465-2020, 2020
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In order to reduce the cost of ocean biogeochemical models, a multi-grid approach where ocean dynamics and tracer transport are computed with different spatial resolution has been developed in the NEMO v3.6 OGCM. Different experiments confirm that the spatial resolution of hydrodynamical fields can be coarsened without significantly affecting the resolved passive tracer fields. This approach leads to a factor of 7 reduction of the overhead associated with running a full biogeochemical model.
Clark Pennelly and Paul G. Myers
Geosci. Model Dev., 13, 4959–4975, https://doi.org/10.5194/gmd-13-4959-2020, https://doi.org/10.5194/gmd-13-4959-2020, 2020
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A high-resolution ocean simulation was carried out within the Labrador Sea, a region that low-resolution climate simulations may misrepresent. We show that small-scale eddies and their associated transport are better resolved at higher resolution than at lower resolution. These eddies transport important properties to the interior of the Labrador Sea, impacting the stratification and reducing the convection extent so that it is far more accurate when compared to what observations suggest.
Bijoy Thompson, Claudio Sanchez, Boon Chong Peter Heng, Rajesh Kumar, Jianyu Liu, Xiang-Yu Huang, and Pavel Tkalich
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-326, https://doi.org/10.5194/gmd-2020-326, 2020
Revised manuscript accepted for GMD
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This article describes the development and ocean forecast evaluation of an atmosphere-ocean coupled prediction system for the Maritime Continent domain, which includes the eastern Indian and western Pacific Oceans. The coupled system comprises regional configurations of the atmospheric model MetUM and ocean model NEMO, coupled using the OASIS3-MCT libraries. The model forecast deviation of selected fields relative to observation is within acceptable error limits of operational forecast models.
Eric P. Chassignet, Stephen G. Yeager, Baylor Fox-Kemper, Alexandra Bozec, Frederic Castruccio, Gokhan Danabasoglu, Christopher Horvat, Who M. Kim, Nikolay Koldunov, Yiwen Li, Pengfei Lin, Hailong Liu, Dmitry V. Sein, Dmitry Sidorenko, Qiang Wang, and Xiaobiao Xu
Geosci. Model Dev., 13, 4595–4637, https://doi.org/10.5194/gmd-13-4595-2020, https://doi.org/10.5194/gmd-13-4595-2020, 2020
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This paper presents global comparisons of fundamental global climate variables from a suite of four pairs of matched low- and high-resolution ocean and sea ice simulations to assess the robustness of climate-relevant improvements in ocean simulations associated with moving from coarse (∼1°) to eddy-resolving (∼0.1°) horizontal resolutions. Despite significant improvements, greatly enhanced horizontal resolution does not deliver unambiguous bias reduction in all regions for all models.
Mark E. Baird, Karen A. Wild-Allen, John Parslow, Mathieu Mongin, Barbara Robson, Jennifer Skerratt, Farhan Rizwi, Monika Soja-Woźniak, Emlyn Jones, Mike Herzfeld, Nugzar Margvelashvili, John Andrewartha, Clothilde Langlais, Matthew P. Adams, Nagur Cherukuru, Malin Gustafsson, Scott Hadley, Peter J. Ralph, Uwe Rosebrock, Thomas Schroeder, Leonardo Laiolo, Daniel Harrison, and Andrew D. L. Steven
Geosci. Model Dev., 13, 4503–4553, https://doi.org/10.5194/gmd-13-4503-2020, https://doi.org/10.5194/gmd-13-4503-2020, 2020
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For 20+ years, the Commonwealth Science Industry and Research Organisation (CSIRO) has been developing a biogeochemical (BGC) model for coupling with a hydrodynamic and sediment model for application in estuaries, coastal waters and shelf seas. This paper provides a full mathematical description (equations, parameters), model evaluation and access to the numerical code. The model is particularly suited to applications in shallow waters where benthic processes are critical to ecosystem function.
Kristen M. Thyng, Daijiro Kobashi, Veronica Ruiz-Xomchuk, Lixin Qu, Xu Chen, and Robert D. Hetland
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-221, https://doi.org/10.5194/gmd-2020-221, 2020
Revised manuscript accepted for GMD
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We modified the ROMS ocean model to run in offline mode so that previously-run fields of sea surface height and velocity fields are input to calculate tracer advection without running the full model with a larger time step to run faster. The code was tested with 2 advection schemes and both are robust with over 99% accuracy of the offline to online run after 14 simulation days. This allows for ROMS users to maximize use of new or existing output to quickly run additional tracer simulations.
Angela A. Bahamondes Dominguez, Anna E. Hickman, Robert Marsh, and C. Mark Moore
Geosci. Model Dev., 13, 4019–4040, https://doi.org/10.5194/gmd-13-4019-2020, https://doi.org/10.5194/gmd-13-4019-2020, 2020
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The central Celtic Sea has previously been studied with a 1-D model called S2P3, showing discrepancies between observations and the model results due to poor representation of some processes. Therefore, the S2P3 model was developed to include zooplankton and phytoplankton cells' adaptation to changes in irradiance. Results demonstrate that better agreement with biological observations can be achieved when the model includes these processes and is adequately constrained.
Pavel Perezhogin, Ilya Chernov, and Nikolay Iakovlev
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-182, https://doi.org/10.5194/gmd-2020-182, 2020
Revised manuscript accepted for GMD
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We describe the parallel implementation of the FEMAO model of an ice-covered sea with 2D Hilbert-curve domain decomposition. Load-balancing is crucial because performance depends on the local depth. We propose, compare, and discuss four approaches to load balancing. The parallel library allowed to modify the original sequential algorithm as little as possible. The performance increases almost linearly (tested up to 996 CPU cores) for the model of the shallow White Sea.
Gregory C. Smith, Yimin Liu, Mounir Benkiran, Kamel Chikhar, Dorina Surcel Colan, Charles-Emmanuel Testut, Frederic Dupont, Ji Lei, François Roy, Jean-Francois Lemieux, and Fraser Davidson
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-255, https://doi.org/10.5194/gmd-2020-255, 2020
Preprint under review for GMD
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Canada's coastlines include a diversity of ocean environments. In response to the strong need to support marine activities and security, we present the first pan-Canadian operational regional ocean analysis system. A novel online tidal harmonic analysis method is introduced that uses a sliding-window approach. Innovations are compared those from the Canadian global analysis system. Particular improvements are found near the Gulf Stream due to the higher model grid-resolution.
Alexander G. López, John L. Wilkin, and Julia C. Levin
Geosci. Model Dev., 13, 3709–3729, https://doi.org/10.5194/gmd-13-3709-2020, https://doi.org/10.5194/gmd-13-3709-2020, 2020
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This article describes a regional circulation model, Doppio, for the Mid-Atlantic Bight and the Gulf of Maine. The model demonstrates useful skill in comparison to a comprehensive suite of observations. Development focused on achieving a model configuration that allows decadal-scale simulations of physical ocean circulation that can underpin studies of ecosystems and biogeochemistry. Doppio captures the temperature and salinity stratification well, along with the large-scale mean circulation.
Hiroyuki Tsujino, L. Shogo Urakawa, Stephen M. Griffies, Gokhan Danabasoglu, Alistair J. Adcroft, Arthur E. Amaral, Thomas Arsouze, Mats Bentsen, Raffaele Bernardello, Claus W. Böning, Alexandra Bozec, Eric P. Chassignet, Sergey Danilov, Raphael Dussin, Eleftheria Exarchou, Pier Giuseppe Fogli, Baylor Fox-Kemper, Chuncheng Guo, Mehmet Ilicak, Doroteaciro Iovino, Who M. Kim, Nikolay Koldunov, Vladimir Lapin, Yiwen Li, Pengfei Lin, Keith Lindsay, Hailong Liu, Matthew C. Long, Yoshiki Komuro, Simon J. Marsland, Simona Masina, Aleksi Nummelin, Jan Klaus Rieck, Yohan Ruprich-Robert, Markus Scheinert, Valentina Sicardi, Dmitry Sidorenko, Tatsuo Suzuki, Hiroaki Tatebe, Qiang Wang, Stephen G. Yeager, and Zipeng Yu
Geosci. Model Dev., 13, 3643–3708, https://doi.org/10.5194/gmd-13-3643-2020, https://doi.org/10.5194/gmd-13-3643-2020, 2020
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The OMIP-2 framework for global ocean–sea-ice model simulations is assessed by comparing multi-model means from 11 CMIP6-class global ocean–sea-ice models calculated separately for the OMIP-1 and OMIP-2 simulations. Many features are very similar between OMIP-1 and OMIP-2 simulations, and yet key improvements in transitioning from OMIP-1 to OMIP-2 are also identified. Thus, the present assessment justifies that future ocean–sea-ice model development and analysis studies use the OMIP-2 framework.
Jordyn E. Moscoso, Andrew L. Stewart, Daniele Bianchi, and James C. McWilliams
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-173, https://doi.org/10.5194/gmd-2020-173, 2020
Revised manuscript accepted for GMD
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This project was created to understand the across-shore distribution of plankton in the California Current System. To complete this study, we used a quasi-2D dynamical model coupled to an ecosystem model. This paper is a preliminary study to test and validate the model against data collected by The California Cooperative Oceanic Fisheries Investigations (CalCOFI). We show the solution of our model solution compares well to the data and discuss our model as a tool for further model development.
Florian Lemarié, Guillaume Samson, Jean-Luc Redelsperger, Hervé Giordani, Théo Brivoal, and Gurvan Madec
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-210, https://doi.org/10.5194/gmd-2020-210, 2020
Revised manuscript accepted for GMD
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A simplified model of the Atmospheric Boundary Layer (ABL) of intermediate complexity between a bulk parameterization and a full three-dimensional atmospheric model has been developed and integrated to the NEMO ocean model.
An objective in the derivation of such simplified model is to reach an apt representation in ocean-only numerical simulations of some of the key processes associated to air/sea interactions at the characteristic scales of the oceanic mesoscale.
Pedro Colombo, Bernard Barnier, Thierry Penduff, Jérôme Chanut, Julie Deshayes, Jean-Marc Molines, Julien Le Sommer, Polina Verezemskaya, Sergey Gulev, and Anne-Marie Treguier
Geosci. Model Dev., 13, 3347–3371, https://doi.org/10.5194/gmd-13-3347-2020, https://doi.org/10.5194/gmd-13-3347-2020, 2020
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In the ocean circulation model NEMO, the representation of the overflow of dense Arctic waters through the Denmark Strait is investigated. In this
z-coordinate context, sensitivity tests show that the mixing parameterizations preferably act along the model grid slope. Thus, the representation of the overflow is more sensitive to resolution than to parameterization and is best when the numerical grid matches the local topographic slope.
Hideharu Sasaki, Shinichiro Kida, Ryo Furue, Hidenori Aiki, Nobumasa Komori, Yukio Masumoto, Toru Miyama, Masami Nonaka, Yoshikazu Sasai, and Bunmei Taguchi
Geosci. Model Dev., 13, 3319–3336, https://doi.org/10.5194/gmd-13-3319-2020, https://doi.org/10.5194/gmd-13-3319-2020, 2020
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A quasi-global eddying ocean hindcast simulation using a new version of our model, called OFES2, was conducted to overcome several issues in its previous version. OFES2 simulated oceanic fields from 1958 to 2016 with improved global sea surface temperature and salinity, water mass properties in the Indonesian and Arabian seas, and Niño3.4 and Indian Ocean Dipole indexes. The output from OFES2 will be useful in studying various oceanic phenomena with broad spatiotemporal scales.
Christian Ferrarin, Marco Bajo, and Georg Umgiesser
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-61, https://doi.org/10.5194/gmd-2020-61, 2020
Revised manuscript accepted for GMD
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The problem of the optimization of ocean monitoring networks is tackled throughout the implementation of data assimilation techniques in a numerical model. The methodology has been applied and tested to the tide gauge network in the Lagoon of Venice (Italy). The data assimilation methods allow identifying the minimum number of stations and their distribution that correctly represent the lagoon’s dynamics. With the help of the numerical model, two-thirds of the monitoring network can be dismissed.
Dafydd Stephenson, Simon A. Müller, and Florian Sévellec
Geosci. Model Dev., 13, 2031–2050, https://doi.org/10.5194/gmd-13-2031-2020, https://doi.org/10.5194/gmd-13-2031-2020, 2020
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Different water types are created at the sea surface with a signature based on the local conditions of the atmosphere. They then take these conditions with them into the deeper ocean, and so their journey is an important climate process to understand. In this study, we modify and repurpose a specialised model which simulates the ocean forward and backward in time to determine where new ocean water goes, where at the surface existing water comes from, and how old it is, by tracking it as a dye.
Violaine Piton, Marine Herrmann, Florent Lyard, Patrick Marsaleix, Thomas Duhaut, Damien Allain, and Sylvain Ouillon
Geosci. Model Dev., 13, 1583–1607, https://doi.org/10.5194/gmd-13-1583-2020, https://doi.org/10.5194/gmd-13-1583-2020, 2020
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Consequences of tidal dynamics on hydro-sedimentary processes are a recurrent issue in estuarine and coastal processes studies, and accurate tidal solutions are a prerequisite for modeling sediment transport. This study presents the implementation and optimization of a model configuration in terms of bathymetry and bottom friction and assess the influence of these parameters on tidal solutions, in a macro-tidal environment: the Gulf of Tonkin (Vietnam).
Alexander Barth, Aida Alvera-Azcárate, Matjaz Licer, and Jean-Marie Beckers
Geosci. Model Dev., 13, 1609–1622, https://doi.org/10.5194/gmd-13-1609-2020, https://doi.org/10.5194/gmd-13-1609-2020, 2020
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DINCAE is a method for reconstructing missing data in satellite datasets using a neural network. Satellite observations working in the optical and infrared bands are affected by clouds, which obscure part of the ocean underneath. In this paper, a neural network with the structure of a convolutional auto-encoder is developed to reconstruct the missing data based on the available cloud-free pixels in satellite images.
Jiangyu Li and Shaoqing Zhang
Geosci. Model Dev., 13, 1035–1054, https://doi.org/10.5194/gmd-13-1035-2020, https://doi.org/10.5194/gmd-13-1035-2020, 2020
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Two assimilation systems developed using two nearly independent wave models are used to study the influences of various error sources including mode bias on wave data assimilation; a statistical method is explored to make full use of the merits of individual assimilation systems for bias correction, thus improving wave analysis greatly. This study opens a door to further our understanding of physical processes in waves and associated air–sea interactions for improving wave modeling.
Heiner Dietze, Ulrike Löptien, and Julia Getzlaff
Geosci. Model Dev., 13, 71–97, https://doi.org/10.5194/gmd-13-71-2020, https://doi.org/10.5194/gmd-13-71-2020, 2020
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We present a new near-global coupled biogeochemical ocean-circulation model configuration of the Southern Ocean. The configuration features both a relatively equilibrated oceanic carbon inventory and an explicit representation of mesoscale eddies. In this paper, we document the model configuration and showcase its potential to tackle research questions such as the Southern Ocean carbon uptake dynamics on decadal timescales.
Jaap H. Nienhuis and Jorge Lorenzo-Trueba
Geosci. Model Dev., 12, 4013–4030, https://doi.org/10.5194/gmd-12-4013-2019, https://doi.org/10.5194/gmd-12-4013-2019, 2019
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The response of barrier islands to sea level rise depends on their ability to move landward through the transport of sediment from the beach to the back barrier. The BRIE model simulates these processes and the resulting landward movement of barrier islands. The novelty of the BRIE model is the incorporation of tidal inlets (gaps between barrier islands) that can transport sediment landward and therefore help keep barrier islands above sea level.
Bjarne Büchmann
Geosci. Model Dev., 12, 3915–3922, https://doi.org/10.5194/gmd-12-3915-2019, https://doi.org/10.5194/gmd-12-3915-2019, 2019
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Operational forecasting of the ocean state – e.g. used for ship route planning, sea rescue, and oil spill drift models – relies on data (forcing) obtained from weather forecasting. Unfortunately, the so-called meteorological analysis step introduces a discontinuity, which affects the ocean models adversely. In the present paper, a straightforward method to deal with the issue is introduced. Practical examples are given to illuminate the scale of the problem.
Philippe Delandmeter and Erik van Sebille
Geosci. Model Dev., 12, 3571–3584, https://doi.org/10.5194/gmd-12-3571-2019, https://doi.org/10.5194/gmd-12-3571-2019, 2019
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Parcels is a framework to compute how ocean currents transport
stuffsuch as plankton and plastic around. In the latest version 2.0 of Parcels, we focus on more accurate interpolation schemes and implement methods to seamlessly combine data from different sources (such as winds and currents, possibly in different regions). We show that this framework is very efficient for tracking how microplastic is transported through the North Sea into the Arctic.
Franziska U. Schwarzkopf, Arne Biastoch, Claus W. Böning, Jérôme Chanut, Jonathan V. Durgadoo, Klaus Getzlaff, Jan Harlaß, Jan K. Rieck, Christina Roth, Markus M. Scheinert, and René Schubert
Geosci. Model Dev., 12, 3329–3355, https://doi.org/10.5194/gmd-12-3329-2019, https://doi.org/10.5194/gmd-12-3329-2019, 2019
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A family of nested global ocean general circulation model configurations, the INALT family, has been established with resolutions of 1/10°, 1/20° and 1/60° in the South Atlantic and western Indian oceans, covering the greater Agulhas Current (AC) system. The INALT family provides a consistent set of configurations that allows to address eddy dynamics in the AC system and their impact on the large-scale ocean circulation.
Thomas Rackow, Dmitry V. Sein, Tido Semmler, Sergey Danilov, Nikolay V. Koldunov, Dmitry Sidorenko, Qiang Wang, and Thomas Jung
Geosci. Model Dev., 12, 2635–2656, https://doi.org/10.5194/gmd-12-2635-2019, https://doi.org/10.5194/gmd-12-2635-2019, 2019
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Current climate models show errors in the deep ocean that are larger than the level of natural variability and the response to enhanced greenhouse gas concentrations. These errors are larger than the signals we aim to predict. With the AWI Climate Model, we show that increasing resolution to resolve eddies can lead to major reductions in deep ocean errors. AWI's next-generation (CMIP6) model configuration will thus use locally eddy-resolving computational grids for projecting climate change.
Keith J. Roberts, William J. Pringle, and Joannes J. Westerink
Geosci. Model Dev., 12, 1847–1868, https://doi.org/10.5194/gmd-12-1847-2019, https://doi.org/10.5194/gmd-12-1847-2019, 2019
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Computer simulations can be used to reproduce the dynamics of the ocean near the coast. These simulations often use a mesh of triangles to represent the domain since they can be orientated and disparately sized in such a way to accurately fit the coastline shape. This paper describes a software package (OceanMesh2D v1.0) that has been developed in order to automatically and objectively design triangular meshes based on geospatial data inputs that represent the coastline and ocean depths.
Pearse J. Buchanan, Richard J. Matear, Zanna Chase, Steven J. Phipps, and Nathan L. Bindoff
Geosci. Model Dev., 12, 1491–1523, https://doi.org/10.5194/gmd-12-1491-2019, https://doi.org/10.5194/gmd-12-1491-2019, 2019
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Oceanic sediment cores are commonly used to understand past climates. The composition of the sediments changes with the ocean above it. An understanding of oceanographic conditions that existed many thousands of years ago, in some cases many millions of years ago, can therefore be extracted from sediment cores. We simulate two chemical signatures (13C and 15N) of sediment cores in a model. This study assesses the model before it is applied to reinterpret the sedimentary record.
Carlos Rocha, Christopher A. Edwards, Moninya Roughan, Paulina Cetina-Heredia, and Colette Kerry
Geosci. Model Dev., 12, 441–456, https://doi.org/10.5194/gmd-12-441-2019, https://doi.org/10.5194/gmd-12-441-2019, 2019
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Off southeast Australia, the East Australian Current (EAC) moves warm nutrient-poor waters towards the pole. In this region, the EAC and a large number of vortices pinching off it strongly affect phytoplankton’s access to nutrients and light. To study these dynamics, we created a numerical model that is able to solve the ocean conditions and how they modulate the foundation of the region’s ecosystem. We validated model results against available data and this showed that the model performs well.
Robinson Hordoir, Lars Axell, Anders Höglund, Christian Dieterich, Filippa Fransner, Matthias Gröger, Ye Liu, Per Pemberton, Semjon Schimanke, Helen Andersson, Patrik Ljungemyr, Petter Nygren, Saeed Falahat, Adam Nord, Anette Jönsson, Iréne Lake, Kristofer Döös, Magnus Hieronymus, Heiner Dietze, Ulrike Löptien, Ivan Kuznetsov, Antti Westerlund, Laura Tuomi, and Jari Haapala
Geosci. Model Dev., 12, 363–386, https://doi.org/10.5194/gmd-12-363-2019, https://doi.org/10.5194/gmd-12-363-2019, 2019
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Nemo-Nordic is a regional ocean model based on a community code (NEMO). It covers the Baltic and the North Sea area and is used as a forecast model by the Swedish Meteorological and Hydrological Institute. It is also used as a research tool by scientists of several countries to study, for example, the effects of climate change on the Baltic and North seas. Using such a model permits us to understand key processes in this coastal ecosystem and how such processes will change in a future climate.
Hagen Radtke, Marko Lipka, Dennis Bunke, Claudia Morys, Jana Woelfel, Bronwyn Cahill, Michael E. Böttcher, Stefan Forster, Thomas Leipe, Gregor Rehder, and Thomas Neumann
Geosci. Model Dev., 12, 275–320, https://doi.org/10.5194/gmd-12-275-2019, https://doi.org/10.5194/gmd-12-275-2019, 2019
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This paper describes a coupled benthic–pelagic biogeochemical model, ERGOM-SED. We demonstrate its use in a one-dimensional physical model, which is horizontally integrated and vertically resolved. We describe the application of the model to seven stations in the south-western Baltic Sea. The model was calibrated using pore water profiles from these stations. We compare the model results to these and to measured sediment compositions, benthopelagic fluxes and bioturbation intensities.
Dale Partridge, Tobias Friedrich, and Brian S. Powell
Geosci. Model Dev., 12, 195–213, https://doi.org/10.5194/gmd-12-195-2019, https://doi.org/10.5194/gmd-12-195-2019, 2019
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This paper demonstrates the improvements made to an operational ocean forecast model around the Hawaiian Islands by performing a reanalysis of the model over a 10-year period. Using a number of different measurements we show the role a variety of observations play in producing the forecast, in particular the contribution of high-frequency radar.
Tuomas Kärnä, Stephan C. Kramer, Lawrence Mitchell, David A. Ham, Matthew D. Piggott, and António M. Baptista
Geosci. Model Dev., 11, 4359–4382, https://doi.org/10.5194/gmd-11-4359-2018, https://doi.org/10.5194/gmd-11-4359-2018, 2018
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Unstructured meshes are attractive for coastal ocean modeling, as they allow more accurate representation of complex coastal topography. Unstructured mesh models are, however, often perceived as slow and inaccurate. We present a novel discontinuous Galerkin ocean model: Thetis. We demonstrate that the model is able to simulate baroclinic ocean flows with high accuracy on a triangular prismatic mesh. This work paves the way for highly accurate and efficient three-dimensional coastal ocean models.
Paul Sandery
Geosci. Model Dev., 11, 4011–4019, https://doi.org/10.5194/gmd-11-4011-2018, https://doi.org/10.5194/gmd-11-4011-2018, 2018
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This article compares global mesoscale ocean forecasts with different data assimilation cycle lengths. Mean absolute increment is used to quantify differences in the overall impact of observations. Greater observation impact does not necessarily improve a forecast system. Experiments show a 1-day cycle generates improved 7-day forecasts when compared to a 3-day cycle. Cycle length is an important choice that influences system bias and predictability.
Daniel Boettger, Robin Robertson, and Gary B. Brassington
Geosci. Model Dev., 11, 3795–3805, https://doi.org/10.5194/gmd-11-3795-2018, https://doi.org/10.5194/gmd-11-3795-2018, 2018
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This study focuses on the impact of the model vertical mixing parameterisation on the representation of the mixed layer depth (MLD) in ocean forecast models. We compare data from two recent versions of the OceanMAPS forecast system, and find that while there were large improvements in the later version of the model, the skill of each parameterisation varies with spatial location.
Marco van Hulten, Jean-Claude Dutay, and Matthieu Roy-Barman
Geosci. Model Dev., 11, 3537–3556, https://doi.org/10.5194/gmd-11-3537-2018, https://doi.org/10.5194/gmd-11-3537-2018, 2018
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We present an ocean model of the natural radioactive isotopes thorium-230 and protactinium-231. These isotopes are often used to investigate past ocean circulation and particle transport. They are removed by particles produced by plankton and from uplifted desert dust that is deposited into the ocean. We approach observed dissolved and adsorbed Th-230 and Pa-231 activities. The Pa-231 / Th-230 sedimentation ratio is reproduced as well; this quantity can be used as a proxy for ocean circulation.
Dion Häfner, René Løwe Jacobsen, Carsten Eden, Mads R. B. Kristensen, Markus Jochum, Roman Nuterman, and Brian Vinter
Geosci. Model Dev., 11, 3299–3312, https://doi.org/10.5194/gmd-11-3299-2018, https://doi.org/10.5194/gmd-11-3299-2018, 2018
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Well-performing, easy-to-use ocean models are a central ingredient to further the understanding of our Earth and climate. Veros, the versatile ocean simulator, is the first full-blown ocean model entirely written in the high-level programming language Python. It is considerably more approachable than traditional Fortran models and leverages modern best practices; at the same time, thanks to the Bohrium framework, Veros is about half as fast as a reference implementation in Fortran 90.
Christopher R. Sherwood, Alfredo L. Aretxabaleta, Courtney K. Harris, J. Paul Rinehimer, Romaric Verney, and Bénédicte Ferré
Geosci. Model Dev., 11, 1849–1871, https://doi.org/10.5194/gmd-11-1849-2018, https://doi.org/10.5194/gmd-11-1849-2018, 2018
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Cohesive sediment (mud) is ubiquitous in the world's coastal regions, but its behavior is complicated and often oversimplified by computer models. This paper describes extensions to a widely used open-source coastal ocean model that allow users to simulate important components of cohesive sediment transport.
Knut-Frode Dagestad, Johannes Röhrs, Øyvind Breivik, and Bjørn Ådlandsvik
Geosci. Model Dev., 11, 1405–1420, https://doi.org/10.5194/gmd-11-1405-2018, https://doi.org/10.5194/gmd-11-1405-2018, 2018
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We have developed a computer code with ability to predict how various substances and objects drift in the ocean. This may be used to, e.g. predict the drift of oil to aid cleanup operations, the drift of man-over-board or lifeboats to aid search and rescue operations, or the drift of fish eggs and larvae to understand and manage fish stocks. This new code merges all such applications into one software tool, allowing to optimise and channel any available resources and developments.
Qiang Wang, Claudia Wekerle, Sergey Danilov, Xuezhu Wang, and Thomas Jung
Geosci. Model Dev., 11, 1229–1255, https://doi.org/10.5194/gmd-11-1229-2018, https://doi.org/10.5194/gmd-11-1229-2018, 2018
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For developing a system for Arctic research, we evaluate the Arctic Ocean simulated by FESOM. We use two global meshes differing in the horizontal resolution only in the Arctic Ocean (24 vs. 4.5 km). The high resolution significantly improves the model's representation of the Arctic Ocean. The most pronounced improvement is in the Arctic intermediate layer. The high resolution also improves the ocean surface circulation, mainly through a better representation of the Canadian Arctic Archipelago.
Jennifer A. Graham, Enda O'Dea, Jason Holt, Jeff Polton, Helene T. Hewitt, Rachel Furner, Karen Guihou, Ashley Brereton, Alex Arnold, Sarah Wakelin, Juan Manuel Castillo Sanchez, and C. Gabriela Mayorga Adame
Geosci. Model Dev., 11, 681–696, https://doi.org/10.5194/gmd-11-681-2018, https://doi.org/10.5194/gmd-11-681-2018, 2018
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This paper describes the next-generation ocean forecast model for the European NW shelf, AMM15 (Atlantic Margin Model, 1.5 km resolution). The current forecast system has a resolution of 7 km. While this is sufficient to represent large-scale circulation, many dynamical features (such as eddies, frontal jets, and internal tides) can only begin to be resolved at 0–1 km resolution. Here we introduce AMM15 and demonstrate its ability to represent the mean state and variability of the region.
Julien Chauchat, Zhen Cheng, Tim Nagel, Cyrille Bonamy, and Tian-Jian Hsu
Geosci. Model Dev., 10, 4367–4392, https://doi.org/10.5194/gmd-10-4367-2017, https://doi.org/10.5194/gmd-10-4367-2017, 2017
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This manuscript presents the development and validation of a two-phase flow Eulerian-Eulerian model based on OpenFOAM for sediment transport applications. The mathematical and numerical models are described in detail. The numerical implementation is demonstrated on four test cases: sedimentation of suspended particles, laminar bed load, sheet flow, and scour at an apron. These test cases illustrate the capabilities of SedFoam to deal with complex turbulent sediment transport problems.
Michael Lange and Erik van Sebille
Geosci. Model Dev., 10, 4175–4186, https://doi.org/10.5194/gmd-10-4175-2017, https://doi.org/10.5194/gmd-10-4175-2017, 2017
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Here, we present version 0.9 of Parcels (Probably A Really Computationally Efficient Lagrangian Simulator). Parcels is an experimental prototype code aimed at exploring novel approaches for Lagrangian tracking of virtual ocean particles in the petascale age. The modularity, flexibility and scalability will allow the code to be used to track water, nutrients, microbes, plankton, plastic and even fish.
Inti Pelupessy, Ben van Werkhoven, Arjen van Elteren, Jan Viebahn, Adam Candy, Simon Portegies Zwart, and Henk Dijkstra
Geosci. Model Dev., 10, 3167–3187, https://doi.org/10.5194/gmd-10-3167-2017, https://doi.org/10.5194/gmd-10-3167-2017, 2017
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Researchers from the Netherlands present OMUSE, a software package
developed from core technology originating in the astrophysical
community. Using OMUSE, oceanographic and climate researchers can
develop numerical models of the ocean and the interactions between
different parts of the ocean and the atmosphere. This provides a novel
way to investigate, for example, the local effects of climate change on
the ocean. OMUSE is freely available as open-source software.
Enda O'Dea, Rachel Furner, Sarah Wakelin, John Siddorn, James While, Peter Sykes, Robert King, Jason Holt, and Helene Hewitt
Geosci. Model Dev., 10, 2947–2969, https://doi.org/10.5194/gmd-10-2947-2017, https://doi.org/10.5194/gmd-10-2947-2017, 2017
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An update to an ocean modelling configuration for the European North West Shelf is described. It is assessed against observations and climatologies for 1981–2012. Sensitivities in the model configuration updates are assessed to understand changes in the model system. The model improves upon an existing model of the region, although there remain some areas with significant biases. The paper highlights the dependence upon the quality of the river inputs.
Pierre Mathiot, Adrian Jenkins, Christopher Harris, and Gurvan Madec
Geosci. Model Dev., 10, 2849–2874, https://doi.org/10.5194/gmd-10-2849-2017, https://doi.org/10.5194/gmd-10-2849-2017, 2017
John Marshall, Jeffery Scott, and Andrey Proshutinsky
Geosci. Model Dev., 10, 2833–2848, https://doi.org/10.5194/gmd-10-2833-2017, https://doi.org/10.5194/gmd-10-2833-2017, 2017
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A coordinated set of Arctic modeling experiments is proposed which explores how the Arctic responds to abrupt changes in external forcing by computing
climate response functions(CRFs). We illustrate the approach in the context of a coarse-resolution model of the Arctic and conclude by encouraging other modeling groups to compute CRFs with their own models so that we might begin to document how robust they are to model formulation, resolution, and parameterization.
Yoeri M. Dijkstra, Ronald L. Brouwer, Henk M. Schuttelaars, and George P. Schramkowski
Geosci. Model Dev., 10, 2691–2713, https://doi.org/10.5194/gmd-10-2691-2017, https://doi.org/10.5194/gmd-10-2691-2017, 2017
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Special issue
Short summary
Most ocean models, including NEMO, have unrealistic Southern Ocean deep convection. That is, through extensive areas of the Southern Ocean, they exhibit convection from the surface of the ocean to the sea floor. We find this convection to be an issue as it impacts the whole ocean circulation, notably strengthening the Antarctic Circumpolar Current. Using sensitivity experiments, we show that counter-intuitively the vertical mixing needs to be enhanced to reduce this spurious convection.
Most ocean models, including NEMO, have unrealistic Southern Ocean deep convection. That is,...