Articles | Volume 17, issue 23
https://doi.org/10.5194/gmd-17-8697-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-17-8697-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
10 Dec 2024
Model description paper |
| 10 Dec 2024
| 10 Dec 2024
DalROMS-NWA12 v1.0, a coupled circulation–ice–biogeochemistry modelling system for the northwest Atlantic Ocean: development and validation
Department of Oceanography, Dalhousie University, Halifax, NS, B3H 4R2, Canada
Arnaud Laurent
Department of Oceanography, Dalhousie University, Halifax, NS, B3H 4R2, Canada
Christoph Renkl
Department of Oceanography, Dalhousie University, Halifax, NS, B3H 4R2, Canada
Jinyu Sheng
CORRESPONDING AUTHOR
Department of Oceanography, Dalhousie University, Halifax, NS, B3H 4R2, Canada
Katja Fennel
Department of Oceanography, Dalhousie University, Halifax, NS, B3H 4R2, Canada
Eric Oliver
Department of Oceanography, Dalhousie University, Halifax, NS, B3H 4R2, Canada
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Yucheng Zi, Zhenxia Long, Jinyu Sheng, Gaopeng Lu, Will Perrie, and Ziniu Xiao
EGUsphere, https://doi.org/10.5194/egusphere-2025-2990, https://doi.org/10.5194/egusphere-2025-2990, 2025
This preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).
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We investigated how boreal winter sea surface temperatures anomaly in the central tropical Pacific impact the Antarctic stratosphere months later. Using 45 years of reanalysis data, we found that warmer sea surface lead to a warmer Antarctic stratosphere and increased ozone during the subsequent austral winter. This link, driven by the planetary waves and reinforced by regional sea-ice loss, provides a new way to make long-range forecasts for stratospheric conditions and ozone.
Arnaud Laurent, Bin Wang, Dariia Atamanchuk, Subhadeep Rakshit, Kumiko Azetsu-Scott, Chris Algar, and Katja Fennel
EGUsphere, https://doi.org/10.5194/egusphere-2025-3361, https://doi.org/10.5194/egusphere-2025-3361, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
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Surface ocean alkalinity enhancement, through the release of alkaline materials, is a technology that could increase the storage of anthropogenic carbon in the ocean. Halifax Harbour (Canada) is a current test site for operational alkalinity addition. Here, we present a model of Halifax Harbour that simulates alkalinity addition at various locations of the harbour and quantifies the resulting net CO2 uptake. The model can be relocated to study alkalinity addition in other coastal systems.
Lina Garcia-Suarez, Katja Fennel, Neha Mehendale, Tronje Peer Kemena, and David Peter Keller
EGUsphere, https://doi.org/10.22541/essoar.173758192.24328151/v2, https://doi.org/10.22541/essoar.173758192.24328151/v2, 2025
This preprint is open for discussion and under review for Ocean Science (OS).
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This study shows that regional ocean warming can make the Gulf Stream appear to shift north, even when its path remains stable in a changing climate. Temperature-based proxies, like the Gulf Stream North Wall, overestimate changes in its position. Methods based on sea surface height provide a more accurate view. These results help improve how we track changes in ocean currents and avoid misinterpreting signs of climate-related shifts.
Yu Zhang, Jintao Gu, Shengli Chen, Jianyu Hu, Jinyu Sheng, and Jiuxing Xing
Ocean Sci., 21, 1047–1063, https://doi.org/10.5194/os-21-1047-2025, https://doi.org/10.5194/os-21-1047-2025, 2025
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Current observations at two moorings in the northern South China Sea reveal that mesoscale eddies can transfer energy with near-inertial oscillations (NIOs). Numerical experiments are conducted to investigate important parameters affecting energy transfer between mesoscale eddies and NIOs, which demonstrate that the energy transferred by mesoscale eddies is larger with stronger winds and higher strength of the mesoscale eddy. Anticyclonic eddies can transfer more energy than cyclonic eddies.
Gianpiero Cossarini, Andrew Moore, Stefano Ciavatta, and Katja Fennel
State Planet, 5-opsr, 12, https://doi.org/10.5194/sp-5-opsr-12-2025, https://doi.org/10.5194/sp-5-opsr-12-2025, 2025
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Marine biogeochemistry refers to the cycling of chemical elements resulting from physical transport, chemical reaction, uptake, and processing by living organisms. Biogeochemical models can have a wide range of complexity, from a single nutrient to fully explicit representations of multiple nutrients, trophic levels, and functional groups. Uncertainty sources are the lack of knowledge about the parameterizations, the initial and boundary conditions, and the lack of observations.
Christoph Renkl, Eric C. J. Oliver, and Keith R. Thompson
Ocean Sci., 21, 181–198, https://doi.org/10.5194/os-21-181-2025, https://doi.org/10.5194/os-21-181-2025, 2025
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Mean dynamic topography (MDT) describes variations in the mean sea surface height above a reference surface called a geoid. We show that MDT predicted by a regional ocean model, including a significant tilt of several centimeters along the coast of Nova Scotia, is in good agreement with estimates based on sea level observations. We demonstrate that this alongshore tilt of MDT can provide a direct estimate of the average alongshore current and also of the area-integrated nearshore circulation.
Krysten Rutherford, Katja Fennel, Lina Garcia Suarez, and Jasmin G. John
Biogeosciences, 21, 301–314, https://doi.org/10.5194/bg-21-301-2024, https://doi.org/10.5194/bg-21-301-2024, 2024
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We downscaled two mid-century (~2075) ocean model projections to a high-resolution regional ocean model of the northwest North Atlantic (NA) shelf. In one projection, the NA shelf break current practically disappears; in the other it remains almost unchanged. This leads to a wide range of possible future shelf properties. More accurate projections of coastal circulation features would narrow the range of possible outcomes of biogeochemical projections for shelf regions.
Robert W. Izett, Katja Fennel, Adam C. Stoer, and David P. Nicholson
Biogeosciences, 21, 13–47, https://doi.org/10.5194/bg-21-13-2024, https://doi.org/10.5194/bg-21-13-2024, 2024
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This paper provides an overview of the capacity to expand the global coverage of marine primary production estimates using autonomous ocean-going instruments, called Biogeochemical-Argo floats. We review existing approaches to quantifying primary production using floats, provide examples of the current implementation of the methods, and offer insights into how they can be better exploited. This paper is timely, given the ongoing expansion of the Biogeochemical-Argo array.
Li-Qing Jiang, Adam V. Subhas, Daniela Basso, Katja Fennel, and Jean-Pierre Gattuso
State Planet, 2-oae2023, 13, https://doi.org/10.5194/sp-2-oae2023-13-2023, https://doi.org/10.5194/sp-2-oae2023-13-2023, 2023
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This paper provides comprehensive guidelines for ocean alkalinity enhancement (OAE) researchers on archiving their metadata and data. It includes data standards for various OAE studies and a universal metadata template. Controlled vocabularies for terms like alkalinization methods are included. These guidelines also apply to ocean acidification data.
Katja Fennel, Matthew C. Long, Christopher Algar, Brendan Carter, David Keller, Arnaud Laurent, Jann Paul Mattern, Ruth Musgrave, Andreas Oschlies, Josiane Ostiguy, Jaime B. Palter, and Daniel B. Whitt
State Planet, 2-oae2023, 9, https://doi.org/10.5194/sp-2-oae2023-9-2023, https://doi.org/10.5194/sp-2-oae2023-9-2023, 2023
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This paper describes biogeochemical models and modelling techniques for applications related to ocean alkalinity enhancement (OAE) research. Many of the most pressing OAE-related research questions cannot be addressed by observation alone but will require a combination of skilful models and observations. We present illustrative examples with references to further information; describe limitations, caveats, and future research needs; and provide practical recommendations.
Stefania A. Ciliberti, Enrique Alvarez Fanjul, Jay Pearlman, Kirsten Wilmer-Becker, Pierre Bahurel, Fabrice Ardhuin, Alain Arnaud, Mike Bell, Segolene Berthou, Laurent Bertino, Arthur Capet, Eric Chassignet, Stefano Ciavatta, Mauro Cirano, Emanuela Clementi, Gianpiero Cossarini, Gianpaolo Coro, Stuart Corney, Fraser Davidson, Marie Drevillon, Yann Drillet, Renaud Dussurget, Ghada El Serafy, Katja Fennel, Marcos Garcia Sotillo, Patrick Heimbach, Fabrice Hernandez, Patrick Hogan, Ibrahim Hoteit, Sudheer Joseph, Simon Josey, Pierre-Yves Le Traon, Simone Libralato, Marco Mancini, Pascal Matte, Angelique Melet, Yasumasa Miyazawa, Andrew M. Moore, Antonio Novellino, Andrew Porter, Heather Regan, Laia Romero, Andreas Schiller, John Siddorn, Joanna Staneva, Cecile Thomas-Courcoux, Marina Tonani, Jose Maria Garcia-Valdecasas, Jennifer Veitch, Karina von Schuckmann, Liying Wan, John Wilkin, and Romane Zufic
State Planet, 1-osr7, 2, https://doi.org/10.5194/sp-1-osr7-2-2023, https://doi.org/10.5194/sp-1-osr7-2-2023, 2023
Benjamin Richaud, Katja Fennel, Eric C. J. Oliver, Michael D. DeGrandpre, Timothée Bourgeois, Xianmin Hu, and Youyu Lu
The Cryosphere, 17, 2665–2680, https://doi.org/10.5194/tc-17-2665-2023, https://doi.org/10.5194/tc-17-2665-2023, 2023
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Sea ice is a dynamic carbon reservoir. Its seasonal growth and melt modify the carbonate chemistry in the upper ocean, with consequences for the Arctic Ocean carbon sink. Yet, the importance of this process is poorly quantified. Using two independent approaches, this study provides new methods to evaluate the error in air–sea carbon flux estimates due to the lack of biogeochemistry in ice in earth system models. Those errors range from 5 % to 30 %, depending on the model and climate projection.
Arnaud Laurent, Haiyan Zhang, and Katja Fennel
Biogeosciences, 19, 5893–5910, https://doi.org/10.5194/bg-19-5893-2022, https://doi.org/10.5194/bg-19-5893-2022, 2022
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The Changjiang is the main terrestrial source of nutrients to the East China Sea (ECS). Nutrient delivery to the ECS has been increasing since the 1960s, resulting in low oxygen (hypoxia) during phytoplankton decomposition in summer. River phosphorus (P) has increased less than nitrogen, and therefore, despite the large nutrient delivery, phytoplankton growth can be limited by the lack of P. Here, we investigate this link between P limitation, phytoplankton production/decomposition, and hypoxia.
Krysten Rutherford, Katja Fennel, Dariia Atamanchuk, Douglas Wallace, and Helmuth Thomas
Biogeosciences, 18, 6271–6286, https://doi.org/10.5194/bg-18-6271-2021, https://doi.org/10.5194/bg-18-6271-2021, 2021
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Using a regional model of the northwestern North Atlantic shelves in combination with a surface water time series and repeat transect observations, we investigate surface CO2 variability on the Scotian Shelf. The study highlights a strong seasonal cycle in shelf-wide pCO2 and spatial variability throughout the summer months driven by physical events. The simulated net flux of CO2 on the Scotian Shelf is out of the ocean, deviating from the global air–sea CO2 flux trend in continental shelves.
Bin Wang, Katja Fennel, and Liuqian Yu
Ocean Sci., 17, 1141–1156, https://doi.org/10.5194/os-17-1141-2021, https://doi.org/10.5194/os-17-1141-2021, 2021
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We demonstrate that even sparse BGC-Argo profiles can substantially improve biogeochemical prediction via a priori model tuning. By assimilating satellite surface chlorophyll and physical observations, subsurface distributions of physical properties and nutrients were improved immediately. The improvement of subsurface chlorophyll was modest initially but was greatly enhanced after adjusting the parameterization for light attenuation through further a priori tuning.
Thomas S. Bianchi, Madhur Anand, Chris T. Bauch, Donald E. Canfield, Luc De Meester, Katja Fennel, Peter M. Groffman, Michael L. Pace, Mak Saito, and Myrna J. Simpson
Biogeosciences, 18, 3005–3013, https://doi.org/10.5194/bg-18-3005-2021, https://doi.org/10.5194/bg-18-3005-2021, 2021
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Better development of interdisciplinary ties between biology, geology, and chemistry advances biogeochemistry through (1) better integration of contemporary (or rapid) evolutionary adaptation to predict changing biogeochemical cycles and (2) universal integration of data from long-term monitoring sites in terrestrial, aquatic, and human systems that span broad geographical regions for use in modeling.
Arnaud Laurent, Katja Fennel, and Angela Kuhn
Biogeosciences, 18, 1803–1822, https://doi.org/10.5194/bg-18-1803-2021, https://doi.org/10.5194/bg-18-1803-2021, 2021
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CMIP5 and CMIP6 models, and a high-resolution regional model, were evaluated by comparing historical simulations with observations in the northwest North Atlantic, a climate-sensitive and biologically productive ocean margin region. Many of the CMIP models performed poorly for biological properties. There is no clear link between model resolution and skill in the global models, but there is an overall improvement in performance in CMIP6 from CMIP5. The regional model performed best.
Haiyan Zhang, Katja Fennel, Arnaud Laurent, and Changwei Bian
Biogeosciences, 17, 5745–5761, https://doi.org/10.5194/bg-17-5745-2020, https://doi.org/10.5194/bg-17-5745-2020, 2020
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In coastal seas, low oxygen, which is detrimental to coastal ecosystems, is increasingly caused by man-made nutrients from land. This is especially so near mouths of major rivers, including the Changjiang in the East China Sea. Here a simulation model is used to identify the main factors determining low-oxygen conditions in the region. High river discharge is identified as the prime cause, while wind and intrusions of open-ocean water modulate the severity and extent of low-oxygen conditions.
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Short summary
We developed a modelling system of the northwest Atlantic Ocean that simulates the currents, temperature, salinity, and parts of the biochemical cycle of the ocean, as well as sea ice. The system combines advanced, open-source models and can be used to study, for example, the ocean capture of atmospheric carbon dioxide, which is a key process in the global climate. The system produces realistic results, and we use it to investigate the roles of tides and sea ice in the northwest Atlantic Ocean.
We developed a modelling system of the northwest Atlantic Ocean that simulates the currents,...
