Articles | Volume 17, issue 7
https://doi.org/10.5194/gmd-17-2929-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-17-2929-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
16 Apr 2024
Model description paper |
| 16 Apr 2024
| 16 Apr 2024
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Elin Ristorp Aas
CORRESPONDING AUTHOR
Department of Geosciences, University of Oslo, Oslo, Norway
Centre for Biogeochemistry in the Anthropocene, Department of Geosciences, University of Oslo, Oslo, Norway
Heleen A. de Wit
Norwegian Institute for Water Research, Økernveien 94, 0579 Oslo, Norway
Centre for Biogeochemistry in the Anthropocene, Department of Geosciences, University of Oslo, Oslo, Norway
Terje K. Berntsen
CORRESPONDING AUTHOR
Department of Geosciences, University of Oslo, Oslo, Norway
Centre for Biogeochemistry in the Anthropocene, Department of Geosciences, University of Oslo, Oslo, Norway
Related authors
Elin Ristorp Aas, Inge Althuizen, Hui Tang, Sonya Geange, Eva Lieungh, Vigdis Vandvik, and Terje Koren Berntsen
Biogeosciences, 21, 3789–3817, https://doi.org/10.5194/bg-21-3789-2024, https://doi.org/10.5194/bg-21-3789-2024, 2024
Short summary
Short summary
We used a soil model to replicate two litterbag decomposition experiments to examine the implications of climate, litter quality, and soil microclimate representation. We found that macroclimate was more important than litter quality for modeled mass loss. By comparing different representations of soil temperature and moisture we found that using observed data did not improve model results. We discuss causes for this and suggest possible improvements to both the model and experimental design.
Jacqueline Kay Knutson, François Clayer, Peter Dörsch, Sebastian Westermann, and Heleen A. de Wit
EGUsphere, https://doi.org/10.5194/egusphere-2025-184, https://doi.org/10.5194/egusphere-2025-184, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
Thawing permafrost at Iškoras in northern Norway is transforming peat plateaus into thermokarst ponds and wetlands. These small ponds show striking oversaturation of dissolved greenhouse gases like carbon dioxide (CO2) and methane (CH4), partly due to organic matter processing. Streams nearby emit CO2 driven by turbulence. As permafrost disappears, carbon dynamics will change, potentially increasing emissions of CH4. This study highlights the need to integrate these changes into climate models.
Ragnhild Bieltvedt Skeie, Magne Aldrin, Terje K. Berntsen, Marit Holden, Ragnar Bang Huseby, Gunnar Myhre, and Trude Storelvmo
Earth Syst. Dynam., 15, 1435–1458, https://doi.org/10.5194/esd-15-1435-2024, https://doi.org/10.5194/esd-15-1435-2024, 2024
Short summary
Short summary
Climate sensitivity and aerosol forcing are central quantities in climate science that are uncertain and contribute to the spread in climate projections. To constrain them, we use observations of temperature and ocean heat content as well as prior knowledge of radiative forcings over the industrialized period. The estimates are sensitive to how aerosol cooling evolved over the latter part of the 20th century, and a strong aerosol forcing trend in the 1960s–1970s is not supported by our analysis.
Elin Ristorp Aas, Inge Althuizen, Hui Tang, Sonya Geange, Eva Lieungh, Vigdis Vandvik, and Terje Koren Berntsen
Biogeosciences, 21, 3789–3817, https://doi.org/10.5194/bg-21-3789-2024, https://doi.org/10.5194/bg-21-3789-2024, 2024
Short summary
Short summary
We used a soil model to replicate two litterbag decomposition experiments to examine the implications of climate, litter quality, and soil microclimate representation. We found that macroclimate was more important than litter quality for modeled mass loss. By comparing different representations of soil temperature and moisture we found that using observed data did not improve model results. We discuss causes for this and suggest possible improvements to both the model and experimental design.
Norbert Pirk, Kristoffer Aalstad, Yeliz A. Yilmaz, Astrid Vatne, Andrea L. Popp, Peter Horvath, Anders Bryn, Ane Victoria Vollsnes, Sebastian Westermann, Terje Koren Berntsen, Frode Stordal, and Lena Merete Tallaksen
Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
Short summary
Short summary
We measured the land–atmosphere exchange of CO2 and water vapor in alpine Norway over 3 years. The extremely snow-rich conditions in 2020 reduced the total annual evapotranspiration to 50 % and reduced the growing-season carbon assimilation to turn the ecosystem from a moderate annual carbon sink to an even stronger source. Our analysis suggests that snow cover anomalies are driving the most consequential short-term responses in this ecosystem’s functioning.
Sara Marie Blichner, Moa Kristina Sporre, and Terje Koren Berntsen
Atmos. Chem. Phys., 21, 17243–17265, https://doi.org/10.5194/acp-21-17243-2021, https://doi.org/10.5194/acp-21-17243-2021, 2021
Short summary
Short summary
In this study we quantify how a new way of modeling the formation of new particles in the atmosphere affects the estimated cooling from aerosol–cloud interactions since pre-industrial times. Our improved scheme merges two common approaches to aerosol modeling: a sectional scheme for treating early growth and the pre-existing modal scheme in NorESM. We find that the cooling from aerosol–cloud interactions since pre-industrial times is reduced by 10 % when the new scheme is used.
Stefanie Falk, Ane V. Vollsnes, Aud B. Eriksen, Lisa Emberson, Connie O'Neill, Frode Stordal, and Terje Koren Berntsen
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-260, https://doi.org/10.5194/bg-2021-260, 2021
Revised manuscript not accepted
Short summary
Short summary
Subarctic vegetation is threatened by climate change and ozone. We assess essential climate variables in 2018/19. 2018 was warmer and brighter than usual in Spring with forest fires and elevated ozone in summer. Visible damage was observed on plant species in 2018. We find that generic parameterizations used in modeling ozone dose do not suffice. We propose a method to acclimate these parameterizations and find an ozone-induced biomass loss of 2.5 to 17.4 % (up to 6 % larger than default).
Stefanie Falk, Ane V. Vollsnes, Aud B. Eriksen, Frode Stordal, and Terje Koren Berntsen
Atmos. Chem. Phys., 21, 15647–15661, https://doi.org/10.5194/acp-21-15647-2021, https://doi.org/10.5194/acp-21-15647-2021, 2021
Short summary
Short summary
We evaluate regional and global models for ozone modeling and damage risk mapping of vegetation over subarctic Europe. Our analysis suggests that low-resolution global models do not reproduce the observed ozone seasonal cycle at ground level, underestimating ozone by 30–50 %. High-resolution regional models capture the seasonal cycle well, still underestimating ozone by up to 20 %. Our proposed gap-filling method for site observations shows a 76 % accuracy compared to the regional model (80 %).
Sara M. Blichner, Moa K. Sporre, Risto Makkonen, and Terje K. Berntsen
Geosci. Model Dev., 14, 3335–3359, https://doi.org/10.5194/gmd-14-3335-2021, https://doi.org/10.5194/gmd-14-3335-2021, 2021
Short summary
Short summary
Aerosol–cloud interactions are the largest contributor to climate forcing uncertainty. In this study we combine two common approaches to aerosol representation in global models: a sectional scheme, which is closer to first principals, for the smallest particles forming in the atmosphere and a log-modal scheme, which is faster, for the larger particles. With this approach, we improve the aerosol representation compared to observations, while only increasing the computational cost by 15 %.
Peter Horvath, Hui Tang, Rune Halvorsen, Frode Stordal, Lena Merete Tallaksen, Terje Koren Berntsen, and Anders Bryn
Biogeosciences, 18, 95–112, https://doi.org/10.5194/bg-18-95-2021, https://doi.org/10.5194/bg-18-95-2021, 2021
Short summary
Short summary
We evaluated the performance of three methods for representing vegetation cover. Remote sensing provided the best match to a reference dataset, closely followed by distribution modelling (DM), whereas the dynamic global vegetation model (DGVM) in CLM4.5BGCDV deviated strongly from the reference. Sensitivity tests show that use of threshold values for predictors identified by DM may improve DGVM performance. The results highlight the potential of using DM in the development of DGVMs.
Marianne T. Lund, Borgar Aamaas, Camilla W. Stjern, Zbigniew Klimont, Terje K. Berntsen, and Bjørn H. Samset
Earth Syst. Dynam., 11, 977–993, https://doi.org/10.5194/esd-11-977-2020, https://doi.org/10.5194/esd-11-977-2020, 2020
Short summary
Short summary
Achieving the Paris Agreement temperature goals requires both near-zero levels of long-lived greenhouse gases and deep cuts in emissions of short-lived climate forcers (SLCFs). Here we quantify the near- and long-term global temperature impacts of emissions of individual SLCFs and CO2 from 7 economic sectors in 13 regions in order to provide the detailed knowledge needed to design efficient mitigation strategies at the sectoral and regional levels.
Moa K. Sporre, Sara M. Blichner, Roland Schrödner, Inger H. H. Karset, Terje K. Berntsen, Twan van Noije, Tommi Bergman, Declan O'Donnell, and Risto Makkonen
Atmos. Chem. Phys., 20, 8953–8973, https://doi.org/10.5194/acp-20-8953-2020, https://doi.org/10.5194/acp-20-8953-2020, 2020
Short summary
Short summary
We investigate how emissions and parameters in current
SOA parameterisations in three ESMs affect both the resulting SOA in the models and the impact this has on climate through the direct and indirect aerosol effects. The SOA changes induce very different responses in the models, especially in terms of the indirect aerosol effect. This introduces uncertainties in ESM estimates of SOA climate impact through feedbacks in a warming climate and through anthropogenic land use change.
Maria Sand, Terje K. Berntsen, Annica M. L. Ekman, Hans-Christen Hansson, and Anna Lewinschal
Atmos. Chem. Phys., 20, 3079–3089, https://doi.org/10.5194/acp-20-3079-2020, https://doi.org/10.5194/acp-20-3079-2020, 2020
Short summary
Short summary
There has been a growing interest in reducing emissions of soot particles to slow global warming and improve air quality. However, estimating the effect of reduced emissions is complex, as soot particles absorb solar radiation and influence heating rates, clouds, and humidity and can influence climate far outside their emission region. Here we investigate the impact of soot emitted in four major emissions areas, using different emissions rates, to see whether location and magnitude matter.
Borgar Aamaas, Terje Koren Berntsen, and Bjørn Hallvard Samset
Atmos. Chem. Phys., 19, 15235–15245, https://doi.org/10.5194/acp-19-15235-2019, https://doi.org/10.5194/acp-19-15235-2019, 2019
Short summary
Short summary
Cutting short-lived pollutants can help keep cool the climate – but only if we are clever. We investigate how regional temperatures may change in response to different packages of air quality measures. One package consists of mitigation measures that mainly target emissions that are known to result in a cooler climate, while in the other, emissions are cut as much as technically possible in response to air quality concerns. We estimate the different contributions from various sectors and region.
Moa K. Sporre, Sara M. Blichner, Inger H. H. Karset, Risto Makkonen, and Terje K. Berntsen
Atmos. Chem. Phys., 19, 4763–4782, https://doi.org/10.5194/acp-19-4763-2019, https://doi.org/10.5194/acp-19-4763-2019, 2019
Short summary
Short summary
In this study, an Earth system model has been used to investigate climate feedbacks associated with increasing BVOC emissions due to higher CO2 concentrations and temperatures. Higher BVOC emissions associated with a changed climate are found to induce an important negative climate feedback through increased aerosol formation and resulting changes in cloud properties. This feedback is found to have the potential to offset about 13 % of the radiative forcing associated with a doubling of CO2.
Anna Lewinschal, Annica M. L. Ekman, Hans-Christen Hansson, Maria Sand, Terje K. Berntsen, and Joakim Langner
Atmos. Chem. Phys., 19, 2385–2403, https://doi.org/10.5194/acp-19-2385-2019, https://doi.org/10.5194/acp-19-2385-2019, 2019
Short summary
Short summary
We use a global climate model to study how anthropogenic emissions of short-lived atmospheric particles in different parts of the world influence the global temperature distribution. We find that the global mean temperature change per unit emission is similar for all emission regions, and the largest temperature response is found in the Arctic no matter where the emissions occur. However, for European emissions, the temperature change per unit emission is found to depend on emission strength.
Kjetil S. Aas, Léo Martin, Jan Nitzbon, Moritz Langer, Julia Boike, Hanna Lee, Terje K. Berntsen, and Sebastian Westermann
The Cryosphere, 13, 591–609, https://doi.org/10.5194/tc-13-591-2019, https://doi.org/10.5194/tc-13-591-2019, 2019
Short summary
Short summary
Many permafrost landscapes contain large amounts of excess ground ice, which gives rise to small-scale elevation differences. This results in lateral fluxes of snow, water, and heat, which we investigate and show how it can be accounted for in large-scale models. Using a novel model technique which can account for these differences, we are able to model both the current state of permafrost and how these landscapes change as permafrost thaws, in a way that could not previously be achieved.
Ragnhild Bieltvedt Skeie, Terje Berntsen, Magne Aldrin, Marit Holden, and Gunnar Myhre
Earth Syst. Dynam., 9, 879–894, https://doi.org/10.5194/esd-9-879-2018, https://doi.org/10.5194/esd-9-879-2018, 2018
Short summary
Short summary
A key question in climate science is how the global mean surface temperature responds to changes in greenhouse gases. This dependency is quantified by the climate sensitivity, which is determined by the complex feedbacks in the climate system. In this study observations of past climate change are used to estimate this sensitivity. Our estimate is consistent with values for the equilibrium climate sensitivity estimated by complex climate models but sensitive to the use of uncertain input data.
Inger Helene Hafsahl Karset, Terje Koren Berntsen, Trude Storelvmo, Kari Alterskjær, Alf Grini, Dirk Olivié, Alf Kirkevåg, Øyvind Seland, Trond Iversen, and Michael Schulz
Atmos. Chem. Phys., 18, 7669–7690, https://doi.org/10.5194/acp-18-7669-2018, https://doi.org/10.5194/acp-18-7669-2018, 2018
Short summary
Short summary
This study highlights the role of oxidants in modeling of the preindustrial-to-present-day aerosol indirect effects. We argue that the aerosol precursor gases should be exposed to oxidants of its era to get a more correct representation of secondary aerosol formation. Our global model simulations show that the total aerosol indirect effect changes from −1.32 to −1.07 W m−2 when the precursor gases in the preindustrial simulation are exposed to preindustrial instead of present-day oxidants.
Maria Sand, Bjørn H. Samset, Yves Balkanski, Susanne Bauer, Nicolas Bellouin, Terje K. Berntsen, Huisheng Bian, Mian Chin, Thomas Diehl, Richard Easter, Steven J. Ghan, Trond Iversen, Alf Kirkevåg, Jean-François Lamarque, Guangxing Lin, Xiaohong Liu, Gan Luo, Gunnar Myhre, Twan van Noije, Joyce E. Penner, Michael Schulz, Øyvind Seland, Ragnhild B. Skeie, Philip Stier, Toshihiko Takemura, Kostas Tsigaridis, Fangqun Yu, Kai Zhang, and Hua Zhang
Atmos. Chem. Phys., 17, 12197–12218, https://doi.org/10.5194/acp-17-12197-2017, https://doi.org/10.5194/acp-17-12197-2017, 2017
Short summary
Short summary
The role of aerosols in the changing polar climate is not well understood and the aerosols are poorly constrained in the models. In this study we have compared output from 16 different aerosol models with available observations at both poles. We show that the model median is representative of the observations, but the model spread is large. The Arctic direct aerosol radiative effect over the industrial area is positive during spring due to black carbon and negative during summer due to sulfate.
Borgar Aamaas, Terje K. Berntsen, Jan S. Fuglestvedt, Keith P. Shine, and William J. Collins
Atmos. Chem. Phys., 17, 10795–10809, https://doi.org/10.5194/acp-17-10795-2017, https://doi.org/10.5194/acp-17-10795-2017, 2017
Short summary
Short summary
The climate impacts for emissions of different pollutants can be made comparable with weighting factors. This article estimates these weights based on temperature change for short-lived pollutants, such as methane and black carbon. Emissions from different seasons and regions are compared, for instance Europe and East Asia. The responses are calculated for four regions, where we see that the responses can be much higher in the Arctic than globally in some cases.
Marianne T. Lund, Borgar Aamaas, Terje Berntsen, Lisa Bock, Ulrike Burkhardt, Jan S. Fuglestvedt, and Keith P. Shine
Earth Syst. Dynam., 8, 547–563, https://doi.org/10.5194/esd-8-547-2017, https://doi.org/10.5194/esd-8-547-2017, 2017
Marianne T. Lund, Terje K. Berntsen, and Bjørn H. Samset
Atmos. Chem. Phys., 17, 6003–6022, https://doi.org/10.5194/acp-17-6003-2017, https://doi.org/10.5194/acp-17-6003-2017, 2017
Short summary
Short summary
This study investigates possibilities for improving the representation of black carbon (BC) distribution in a global atmospheric chemistry-transport model by exploring uncertainties in key processes controlling the removal of aerosols from the atmosphere. Our results provide an increased understanding of the processes contributing to uncertainties in the BC abundance and climate impact and underline the importance of more observations and experimental data further constrain models.
Borgar Aamaas, Terje K. Berntsen, Jan S. Fuglestvedt, and Glen P. Peters
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2017-25, https://doi.org/10.5194/esd-2017-25, 2017
Manuscript not accepted for further review
Borgar Aamaas, Terje K. Berntsen, Jan S. Fuglestvedt, Keith P. Shine, and Nicolas Bellouin
Atmos. Chem. Phys., 16, 7451–7468, https://doi.org/10.5194/acp-16-7451-2016, https://doi.org/10.5194/acp-16-7451-2016, 2016
Kjetil S. Aas, Thorben Dunse, Emily Collier, Thomas V. Schuler, Terje K. Berntsen, Jack Kohler, and Bartłomiej Luks
The Cryosphere, 10, 1089–1104, https://doi.org/10.5194/tc-10-1089-2016, https://doi.org/10.5194/tc-10-1089-2016, 2016
Short summary
Short summary
A high-resolution, coupled atmosphere--climatic mass balance (CMB) model is applied to Svalbard for the period 2003 to 2013. The mean CMB during this period is negative but displays large spatial and temporal variations. Comparison with observations on different scales shows a good overall model performance except for one particular glacier, where wind strongly affects the spatial patterns of CMB. The model also shows considerable sensitivity to model resolution, especially on local scales.
A. Stohl, B. Aamaas, M. Amann, L. H. Baker, N. Bellouin, T. K. Berntsen, O. Boucher, R. Cherian, W. Collins, N. Daskalakis, M. Dusinska, S. Eckhardt, J. S. Fuglestvedt, M. Harju, C. Heyes, Ø. Hodnebrog, J. Hao, U. Im, M. Kanakidou, Z. Klimont, K. Kupiainen, K. S. Law, M. T. Lund, R. Maas, C. R. MacIntosh, G. Myhre, S. Myriokefalitakis, D. Olivié, J. Quaas, B. Quennehen, J.-C. Raut, S. T. Rumbold, B. H. Samset, M. Schulz, Ø. Seland, K. P. Shine, R. B. Skeie, S. Wang, K. E. Yttri, and T. Zhu
Atmos. Chem. Phys., 15, 10529–10566, https://doi.org/10.5194/acp-15-10529-2015, https://doi.org/10.5194/acp-15-10529-2015, 2015
Short summary
Short summary
This paper presents a summary of the findings of the ECLIPSE EU project. The project has investigated the climate and air quality impacts of short-lived climate pollutants (especially methane, ozone, aerosols) and has designed a global mitigation strategy that maximizes co-benefits between air quality and climate policy. Transient climate model simulations allowed quantifying the impacts on temperature (e.g., reduction in global warming by 0.22K for the decade 2041-2050) and precipitation.
S. Eckhardt, B. Quennehen, D. J. L. Olivié, T. K. Berntsen, R. Cherian, J. H. Christensen, W. Collins, S. Crepinsek, N. Daskalakis, M. Flanner, A. Herber, C. Heyes, Ø. Hodnebrog, L. Huang, M. Kanakidou, Z. Klimont, J. Langner, K. S. Law, M. T. Lund, R. Mahmood, A. Massling, S. Myriokefalitakis, I. E. Nielsen, J. K. Nøjgaard, J. Quaas, P. K. Quinn, J.-C. Raut, S. T. Rumbold, M. Schulz, S. Sharma, R. B. Skeie, H. Skov, T. Uttal, K. von Salzen, and A. Stohl
Atmos. Chem. Phys., 15, 9413–9433, https://doi.org/10.5194/acp-15-9413-2015, https://doi.org/10.5194/acp-15-9413-2015, 2015
Short summary
Short summary
The concentrations of sulfate, black carbon and other aerosols in the Arctic are characterized by high values in late winter and spring (so-called Arctic Haze) and low values in summer. Models have long been struggling to capture this seasonality. In this study, we evaluate sulfate and BC concentrations from different updated models and emissions against a comprehensive pan-Arctic measurement data set. We find that the models improved but still struggle to get the maximum concentrations.
B. H. Samset, G. Myhre, A. Herber, Y. Kondo, S.-M. Li, N. Moteki, M. Koike, N. Oshima, J. P. Schwarz, Y. Balkanski, S. E. Bauer, N. Bellouin, T. K. Berntsen, H. Bian, M. Chin, T. Diehl, R. C. Easter, S. J. Ghan, T. Iversen, A. Kirkevåg, J.-F. Lamarque, G. Lin, X. Liu, J. E. Penner, M. Schulz, Ø. Seland, R. B. Skeie, P. Stier, T. Takemura, K. Tsigaridis, and K. Zhang
Atmos. Chem. Phys., 14, 12465–12477, https://doi.org/10.5194/acp-14-12465-2014, https://doi.org/10.5194/acp-14-12465-2014, 2014
Short summary
Short summary
Far from black carbon (BC) emission sources, present climate models are unable to reproduce flight measurements. By comparing recent models with data, we find that the atmospheric lifetime of BC may be overestimated in models. By adjusting modeled BC concentrations to measurements in remote regions - over oceans and at high altitudes - we arrive at a reduced estimate for BC radiative forcing over the industrial era.
K. Tsigaridis, N. Daskalakis, M. Kanakidou, P. J. Adams, P. Artaxo, R. Bahadur, Y. Balkanski, S. E. Bauer, N. Bellouin, A. Benedetti, T. Bergman, T. K. Berntsen, J. P. Beukes, H. Bian, K. S. Carslaw, M. Chin, G. Curci, T. Diehl, R. C. Easter, S. J. Ghan, S. L. Gong, A. Hodzic, C. R. Hoyle, T. Iversen, S. Jathar, J. L. Jimenez, J. W. Kaiser, A. Kirkevåg, D. Koch, H. Kokkola, Y. H Lee, G. Lin, X. Liu, G. Luo, X. Ma, G. W. Mann, N. Mihalopoulos, J.-J. Morcrette, J.-F. Müller, G. Myhre, S. Myriokefalitakis, N. L. Ng, D. O'Donnell, J. E. Penner, L. Pozzoli, K. J. Pringle, L. M. Russell, M. Schulz, J. Sciare, Ø. Seland, D. T. Shindell, S. Sillman, R. B. Skeie, D. Spracklen, T. Stavrakou, S. D. Steenrod, T. Takemura, P. Tiitta, S. Tilmes, H. Tost, T. van Noije, P. G. van Zyl, K. von Salzen, F. Yu, Z. Wang, Z. Wang, R. A. Zaveri, H. Zhang, K. Zhang, Q. Zhang, and X. Zhang
Atmos. Chem. Phys., 14, 10845–10895, https://doi.org/10.5194/acp-14-10845-2014, https://doi.org/10.5194/acp-14-10845-2014, 2014
R. B. Skeie, T. Berntsen, M. Aldrin, M. Holden, and G. Myhre
Earth Syst. Dynam., 5, 139–175, https://doi.org/10.5194/esd-5-139-2014, https://doi.org/10.5194/esd-5-139-2014, 2014
C. Jiao, M. G. Flanner, Y. Balkanski, S. E. Bauer, N. Bellouin, T. K. Berntsen, H. Bian, K. S. Carslaw, M. Chin, N. De Luca, T. Diehl, S. J. Ghan, T. Iversen, A. Kirkevåg, D. Koch, X. Liu, G. W. Mann, J. E. Penner, G. Pitari, M. Schulz, Ø. Seland, R. B. Skeie, S. D. Steenrod, P. Stier, T. Takemura, K. Tsigaridis, T. van Noije, Y. Yun, and K. Zhang
Atmos. Chem. Phys., 14, 2399–2417, https://doi.org/10.5194/acp-14-2399-2014, https://doi.org/10.5194/acp-14-2399-2014, 2014
M. S. Eide, S. B. Dalsøren, Ø. Endresen, B. Samset, G. Myhre, J. Fuglestvedt, and T. Berntsen
Atmos. Chem. Phys., 13, 4183–4201, https://doi.org/10.5194/acp-13-4183-2013, https://doi.org/10.5194/acp-13-4183-2013, 2013
Y. H. Lee, J.-F. Lamarque, M. G. Flanner, C. Jiao, D. T. Shindell, T. Berntsen, M. M. Bisiaux, J. Cao, W. J. Collins, M. Curran, R. Edwards, G. Faluvegi, S. Ghan, L. W. Horowitz, J. R. McConnell, J. Ming, G. Myhre, T. Nagashima, V. Naik, S. T. Rumbold, R. B. Skeie, K. Sudo, T. Takemura, F. Thevenon, B. Xu, and J.-H. Yoon
Atmos. Chem. Phys., 13, 2607–2634, https://doi.org/10.5194/acp-13-2607-2013, https://doi.org/10.5194/acp-13-2607-2013, 2013
B. H. Samset, G. Myhre, M. Schulz, Y. Balkanski, S. Bauer, T. K. Berntsen, H. Bian, N. Bellouin, T. Diehl, R. C. Easter, S. J. Ghan, T. Iversen, S. Kinne, A. Kirkevåg, J.-F. Lamarque, G. Lin, X. Liu, J. E. Penner, Ø. Seland, R. B. Skeie, P. Stier, T. Takemura, K. Tsigaridis, and K. Zhang
Atmos. Chem. Phys., 13, 2423–2434, https://doi.org/10.5194/acp-13-2423-2013, https://doi.org/10.5194/acp-13-2423-2013, 2013
M. Sand, T. K. Berntsen, J. E. Kay, J. F. Lamarque, Ø. Seland, and A. Kirkevåg
Atmos. Chem. Phys., 13, 211–224, https://doi.org/10.5194/acp-13-211-2013, https://doi.org/10.5194/acp-13-211-2013, 2013
Ø. Hodnebrog, T. K. Berntsen, O. Dessens, M. Gauss, V. Grewe, I. S. A. Isaksen, B. Koffi, G. Myhre, D. Olivié, M. J. Prather, F. Stordal, S. Szopa, Q. Tang, P. van Velthoven, and J. E. Williams
Atmos. Chem. Phys., 12, 12211–12225, https://doi.org/10.5194/acp-12-12211-2012, https://doi.org/10.5194/acp-12-12211-2012, 2012
Related subject area
Biogeosciences
FESOM2.1-REcoM3-MEDUSA2: an ocean–sea ice–biogeochemistry model coupled to a sediment model
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
China Wildfire Emission (ChinaWED v1) for the period 2012–2022
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Including the Phosphorus cycle into the LPJ-GUESS Dynamic Global Vegetation Model (v4.1, r10994) – Global patterns and temporal trends of N and P primary production limitation
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Sources of Uncertainty in the Global Fire Model SPITFIRE: Development of LPJmL-SPITFIRE1.9 and Directions for Future Improvements
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
A comprehensive land surface vegetation model for multi-stream data assimilation, D&B v1.0
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Process-based Modeling of Solar-induced Chlorophyll Fluorescence with VISIT-SIF version 1.0
The unicellular NUM v.0.91: A trait-based plankton model evaluated in two contrasting biogeographic provinces
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
NN-TOC v1: global prediction of total organic carbon in marine sediments using deep neural networks
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water, and nitrogen perturbations
A novel Eulerian model based on central moments to simulate age and reactivity continua interacting with mixing processes
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev., 18, 977–1000, https://doi.org/10.5194/gmd-18-977-2025, https://doi.org/10.5194/gmd-18-977-2025, 2025
Short summary
Short summary
Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change, the carbon storage in sediments slows down carbon cycling and influences feedbacks in the atmosphere–ocean–sediment system. This paper describes the coupling of a sediment model to an ocean biogeochemistry model and presents results under the pre-industrial climate and under CO2 perturbation.
Juliette Bernard, Elodie Salmon, Marielle Saunois, Shushi Peng, Penélope Serrano-Ortiz, Antoine Berchet, Palingamoorthy Gnanamoorthy, Joachim Jansen, and Philippe Ciais
Geosci. Model Dev., 18, 863–883, https://doi.org/10.5194/gmd-18-863-2025, https://doi.org/10.5194/gmd-18-863-2025, 2025
Short summary
Short summary
Despite their importance, uncertainties remain in the evaluation of the drivers of temporal variability of methane emissions from wetlands on a global scale. Here, a simplified global model is developed, taking advantage of advances in remote-sensing data and in situ observations. The model reproduces the large spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights into sensitivity analyses.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie A. Fisher, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 18, 287–317, https://doi.org/10.5194/gmd-18-287-2025, https://doi.org/10.5194/gmd-18-287-2025, 2025
Short summary
Short summary
Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
Short summary
Short summary
The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
Short summary
Short summary
In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
Short summary
Short summary
The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
Short summary
Short summary
A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
Short summary
Short summary
This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
Short summary
Short summary
We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
Short summary
Short summary
Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
Short summary
Short summary
We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-170, https://doi.org/10.5194/gmd-2024-170, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
Wildfires release large amounts of greenhouse gases, contributing to global warming. We developed a new model that provides near-real-time estimates of wildfire emissions in China. Our model improves the accuracy of burned area measurements and incorporates advanced data in fuel loads and emission factors. We found that most emissions come from agricultural fires, while emissions from forests and grasslands are decreasing. This model will help reduce the environmental impacts of wildfires.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
Short summary
Short summary
Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
Short summary
Short summary
The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
EGUsphere, https://doi.org/10.5194/egusphere-2024-2592, https://doi.org/10.5194/egusphere-2024-2592, 2024
Short summary
Short summary
Our study maps global nitrogen (N) and phosphorus (P) availability and how they’ve changed from 1901 to 2018. We found that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation has increased, especially in the tropics, while N limitation has decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
Short summary
Short summary
Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
Short summary
Short summary
In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
Short summary
Short summary
A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
EGUsphere, https://doi.org/10.5194/egusphere-2024-1914, https://doi.org/10.5194/egusphere-2024-1914, 2024
Short summary
Short summary
Under climate change, the conditions for wildfires to form are becoming more frequent in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a crucial platform for future developments.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
Short summary
Short summary
A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
Short summary
Short summary
We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
Short summary
Short summary
To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
Short summary
Short summary
This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, Luke Smallmann, Susan Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zähle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek El-Madany, Mirco Migliavacca, Marika Honkanen, Yann Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaetan Pique, Amanda Ojasalo, Shaun Quegan, Peter Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
EGUsphere, https://doi.org/10.5194/egusphere-2024-1534, https://doi.org/10.5194/egusphere-2024-1534, 2024
Short summary
Short summary
When it comes to climate change, the land surfaces are where the vast majority of impacts happen. The task of monitoring those across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us see what changes on our lands.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
Short summary
Short summary
Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
EGUsphere, https://doi.org/10.5194/egusphere-2024-1542, https://doi.org/10.5194/egusphere-2024-1542, 2024
Short summary
Short summary
Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical process-based model developed to represent the global SIF observed by GOSAT. Our model simulation reproduced the global distribution and seasonal variations of GOSAT SIF. The model can be utilized to improve photosynthetic process through the combination of biogeochemical modeling and GOSAT SIF.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-53, https://doi.org/10.5194/gmd-2024-53, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
We describe and test the size-based NUM model, that define organisms by a single set of parameters, on planktonic unicellular ecosystems in a eutrophic and an oligotrophic site. Results show both sites can be modelled with similar parameters, and a robust performance over a wide range of parameters. The study show that the NUM model is useful for non-experts and applicable for modelling domains with limited ecosystem data. It holds promise for evolutionary scenarios and deep-time climate models.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
Short summary
Short summary
We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
EGUsphere, https://doi.org/10.5194/egusphere-2024-1360, https://doi.org/10.5194/egusphere-2024-1360, 2024
Short summary
Short summary
Our research uses deep learning to predict organic carbon stocks in ocean sediments, crucial for understanding their role in the global carbon cycle. By analyzing over 22,000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate the top 10 cm of ocean sediments hold about 171 petagrams of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
Short summary
Short summary
Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
Short summary
Short summary
Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
Short summary
Short summary
Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
Short summary
Short summary
We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
Short summary
Short summary
We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
Short summary
Short summary
Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
Short summary
Short summary
Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
Short summary
Short summary
Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
Short summary
Short summary
By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
Short summary
Short summary
Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
Short summary
Short summary
Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
Short summary
Short summary
To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
Short summary
Short summary
Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
Short summary
Short summary
Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
Short summary
Short summary
This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
Short summary
Short summary
Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
Short summary
Short summary
We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
Short summary
Short summary
Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
Short summary
Short summary
The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
Short summary
Short summary
We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
Short summary
Short summary
Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Cited articles
Aas, E. R.: Model inputs and outputs for “Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)”, Zenodo [data set], https://doi.org/10.5281/zenodo.10946217, 2024. a
Aas, E. R. and Woerner, E.: ecaas/MIMICSplus: MIMICSplus v1.0.1 with DOI, Zenodo [code], https://doi.org/10.5281/zenodo.10610814, 2024. a
Allison, S. D., Wallenstein, M. D., and Bradford, M. A.: Soil-carbon response to warming dependent on microbial physiology, Nat. Geosci., 3, 336–340, https://doi.org/10.1038/ngeo846, 2010. a
Angst, G., Mueller, K. E., Nierop, K. G., and Simpson, M. J.: Plant- or microbial-derived? A review on the molecular composition of stabilized soil organic matter, Soil Biol. Biochem., 156, 108189, https://doi.org/10.1016/J.SOILBIO.2021.108189, 2021. a
Arora, V. K., Katavouta, A., Williams, R. G., Jones, C. D., Brovkin, V., Friedlingstein, P., Schwinger, J., Bopp, L., Boucher, O., Cadule, P., Chamberlain, M. A., Christian, J. R., Delire, C., Fisher, R. A., Hajima, T., Ilyina, T., Joetzjer, E., Kawamiya, M., Koven, C. D., Krasting, J. P., Law, R. M., Lawrence, D. M., Lenton, A., Lindsay, K., Pongratz, J., Raddatz, T., Séférian, R., Tachiiri, K., Tjiputra, J. F., Wiltshire, A., Wu, T., and Ziehn, T.: Carbon–concentration and carbon–climate feedbacks in CMIP6 models and their comparison to CMIP5 models, Biogeosciences, 17, 4173–4222, https://doi.org/10.5194/bg-17-4173-2020, 2020. a
Bååth, E., Nilsson, L. O., Göransson, H., and Wallander, H.: Can the extent of degradation of soil fungal mycelium during soil incubation be used to estimate ectomycorrhizal biomass in soil?, Soil Biol. Biochem., 36, 2105–2109, https://doi.org/10.1016/j.soilbio.2004.06.004, 2004. a
Baskaran, P., Hyvönen, R., Berglund, S. L., Clemmensen, K. E., Ågren, G. I., Lindahl, B. D., and Manzoni, S.: Modelling the influence of ectomycorrhizal decomposition on plant nutrition and soil carbon sequestration in boreal forest ecosystems, New Phytol., 213, 1452–1465, https://doi.org/10.1111/nph.14213, 2017. a, b, c, d, e, f, g, h, i, j, k, l
Bonan, G.: Ecological climatology: concepts and applications, Cambridge University Press, https://doi.org/10.1017/cbo9781107339200.022, 2015. a
Brzostek, E. R., Dragoni, D., Brown, Z. A., and Phillips, R. P.: Mycorrhizal type determines the magnitude and direction of root-induced changes in decomposition in a temperate forest, New Phytol., 206, 1274–1282, https://doi.org/10.1111/nph.13303, 2015. a
Camino-Serrano, M., Guenet, B., Luyssaert, S., Ciais, P., Bastrikov, V., De Vos, B., Gielen, B., Gleixner, G., Jornet-Puig, A., Kaiser, K., Kothawala, D., Lauerwald, R., Peñuelas, J., Schrumpf, M., Vicca, S., Vuichard, N., Walmsley, D., and Janssens, I. A.: ORCHIDEE-SOM: modeling soil organic carbon (SOC) and dissolved organic carbon (DOC) dynamics along vertical soil profiles in Europe, Geosci. Model Dev., 11, 937–957, https://doi.org/10.5194/gmd-11-937-2018, 2018. a
Clemmensen, K. E., Bahr, A., Ovaskainen, O., Dahlberg, A., Ekblad, A., Wallander, H., Stenlid, J., Finlay, R. D., Wardle, D. A., and Lindahl, B. D.: Roots and associated fungi drive long-term carbon sequestration in boreal forest, Science, 340, 1615–1618, https://doi.org/10.1126/science.1231923, 2013. a
CTSM Development Team: ecaas/CTSM_Norway_sites: Version1 (Norway_site_runs), Zenodo [code], https://doi.org/10.5281/zenodo.10946157, 2024. a
Esser, J. M. and Nyborg, Å.: Jordsmonn i barskog : en oversikt for Norge, Norwegian Institute of Land Inventory, ISBN 82-7464-034-9, 1992. a
Fatichi, S., Manzoni, S., Or, D., and Paschalis, A.: A Mechanistic Model of Microbially Mediated Soil Biogeochemical Processes: A Reality Check, Global Biogeochem. Cy., 33, 620–648, https://doi.org/10.1029/2018GB006077, 2019. a
Fernandez, C. W. and Kennedy, P. G.: Revisiting the “Gadgil effect”: do interguild fungal interactions control carbon cycling in forest soils?, New Phytol., 209, 1382–1394, https://doi.org/10.1111/nph.13648, 2016. a
Fisher, R. A. and Koven, C. D.: Perspectives on the Future of Land Surface Models and the Challenges of Representing Complex Terrestrial Systems, J. Adv. Model. Earth Sy., 12, e2018MS001453, https://doi.org/10.1029/2018MS001453, 2020. a
Frey, S. D.: Mycorrhizal Fungi as Mediators of Soil Organic Matter Dynamics, Annu. Rev. Ecol. Evol. S., 50, 237–259, https://doi.org/10.1146/annurev-ecolsys-110617-062331, 2019. a
Friedlingstein, P., Jones, M. W., O'Sullivan, M., Andrew, R. M., Bakker, D. C. E., Hauck, J., Le Quéré, C., Peters, G. P., Peters, W., Pongratz, J., Sitch, S., Canadell, J. G., Ciais, P., Jackson, R. B., Alin, S. R., Anthoni, P., Bates, N. R., Becker, M., Bellouin, N., Bopp, L., Chau, T. T. T., Chevallier, F., Chini, L. P., Cronin, M., Currie, K. I., Decharme, B., Djeutchouang, L. M., Dou, X., Evans, W., Feely, R. A., Feng, L., Gasser, T., Gilfillan, D., Gkritzalis, T., Grassi, G., Gregor, L., Gruber, N., Gürses, Ö., Harris, I., Houghton, R. A., Hurtt, G. C., Iida, Y., Ilyina, T., Luijkx, I. T., Jain, A., Jones, S. D., Kato, E., Kennedy, D., Klein Goldewijk, K., Knauer, J., Korsbakken, J. I., Körtzinger, A., Landschützer, P., Lauvset, S. K., Lefèvre, N., Lienert, S., Liu, J., Marland, G., McGuire, P. C., Melton, J. R., Munro, D. R., Nabel, J. E. M. S., Nakaoka, S.-I., Niwa, Y., Ono, T., Pierrot, D., Poulter, B., Rehder, G., Resplandy, L., Robertson, E., Rödenbeck, C., Rosan, T. M., Schwinger, J., Schwingshackl, C., Séférian, R., Sutton, A. J., Sweeney, C., Tanhua, T., Tans, P. P., Tian, H., Tilbrook, B., Tubiello, F., van der Werf, G. R., Vuichard, N., Wada, C., Wanninkhof, R., Watson, A. J., Willis, D., Wiltshire, A. J., Yuan, W., Yue, C., Yue, X., Zaehle, S., and Zeng, J.: Global Carbon Budget 2021, Earth Syst. Sci. Data, 14, 1917–2005, https://doi.org/10.5194/essd-14-1917-2022, 2022. a
Gadgil, P. D. and Gadgil, R. L.: Suppression of litter decomposition by mycorrhizal roots of Pinus radiata, J. Genet., 5, 35–41, 1975. a
Gadgil, R. L. and Gadgil, P.: Mycorrhiza and litter decomposition, Nature, 233, 133–133, 1971. a
German, D. P., Marcelo, K. R. B., Stone, M. M., and Allison, S. D.: The Michaelis-Menten kinetics of soil extracellular enzymes in response to temperature: A cross-latitudinal study, Global Change Biol., 18, 1468–1479, https://doi.org/10.1111/j.1365-2486.2011.02615.x, 2012. a, b
Grandy, A. S. and Robertson, G. P.: Land-use intensity effects on soil organic carbon accumulation rates and mechanisms, Ecosystems, 10, 58–73, https://doi.org/10.1007/s10021-006-9010-y, 2007. a
Hanssen-Bauer, I., Førland, E. J., Haddeland, I., Hisdal, H., Mayer, S., Nesje, A., Nilsen, J., Sandven, S., Sandø, A., Sorteberg, A., and Ådlandsvik, B.: Climate in Norway 2100 – a knowledge base for climate adaptation, Tech. Rep. April, The Norwegian Environment Agency, https://www.researchgate.net/profile/Ingjerd-Haddeland/publication/316922280_Climate_in_Norway_2100/links/59194fab4585152e19a24c98/Climate-in-Norway-2100.pdf (last access: 7 April 2024), 2017. a
Hansson, A., Dargusch, P., and Shulmeister, J.: A review of modern treeline migration, the factors controlling it and the implications for carbon storage, J. Mt. Sci., 18, 291–306, https://doi.org/10.1007/S11629-020-6221-1, 2021. a
Hararuk, O., Smith, M. J., and Luo, Y.: Microbial models with data-driven parameters predict stronger soil carbon responses to climate change, Global Change Biol., 21, 2439–2453, https://doi.org/10.1111/GCB.12827, 2015. a
Hobbie, S. E., Nadelhoffer, K. J., and Högberg, P.: A synthesis: The role of nutrients as constraints on carbon balances in boreal and arctic regions, Plant Soil, 242, 163–170, https://doi.org/10.1023/A:1019670731128, 2002. a
Högberg, P., Näsholm, T., Franklin, O., and Högberg, M. N.: Tamm Review: On the nature of the nitrogen limitation to plant growth in Fennoscandian boreal forests, Forest Ecol. Manag., 403, 161–185, https://doi.org/10.1016/j.foreco.2017.04.045, 2017. a
Huang, W., Van Bodegom, P. M., Declerck, S., Heinonsalo, J., Cosme, M., Viskari, T., Liski, J., and Soudzilovskaia, N. A.: Mycelium chemistry differs markedly between ectomycorrhizal and arbuscular mycorrhizal fungi, Communications Biology, 5, 398, https://doi.org/10.1038/s42003-022-03341-9, 2022a. a, b
Huang, W., van Bodegom, P. M., Viskari, T., Liski, J., and Soudzilovskaia, N. A.: Implementation of mycorrhizal mechanisms into soil carbon model improves the prediction of long-term processes of plant litter decomposition, Biogeosciences, 19, 1469–1490, https://doi.org/10.5194/bg-19-1469-2022, 2022b. a, b
Huang, Y., Guenet, B., Ciais, P., Janssens, I. A., Soong, J. L., Wang, Y., Goll, D., Blagodatskaya, E., and Huang, Y.: ORCHIMIC (v1.0), a microbe-mediated model for soil organic matter decomposition, Geosci. Model Dev., 11, 2111–2138, https://doi.org/10.5194/gmd-11-2111-2018, 2018. a, b
Huang, Y., Guenet, B., Wang, Y. L., and Ciais, P.: Global Simulation and Evaluation of Soil Organic Matter and Microbial Carbon and Nitrogen Stocks Using the Microbial Decomposition Model ORCHIMIC v2.0, Global Biogeochem. Cy., 35, e2020GB006836, https://doi.org/10.1029/2020GB006836, 2021. a
Janssens, I. A., Dieleman, W., Luyssaert, S., Subke, J. A., Reichstein, M., Ceulemans, R., Ciais, P., Dolman, A. J., Grace, J., Matteucci, G., Papale, D., Piao, S. L., Schulze, E. D., Tang, J., and Law, B. E.: Reduction of forest soil respiration in response to nitrogen deposition, Nat. Geosci., 3, 315–322, https://doi.org/10.1038/NGEO844, 2010. a
Koven, C. D., Riley, W. J., Subin, Z. M., Tang, J. Y., Torn, M. S., Collins, W. D., Bonan, G. B., Lawrence, D. M., and Swenson, S. C.: The effect of vertically resolved soil biogeochemistry and alternate soil C and N models on C dynamics of CLM4, Biogeosciences, 10, 7109–7131, https://doi.org/10.5194/bg-10-7109-2013, 2013. a, b
Koven, C. D., Hugelius, G., Lawrence, D. M., and Wieder, W. R.: Higher climatological temperature sensitivity of soil carbon in cold than warm climates, Nat. Clim. Change, 7, 817–822, https://doi.org/10.1038/nclimate3421, 2017. a
Kyker-Snowman, E., Wieder, W. R., Frey, S. D., and Grandy, A. S.: Stoichiometrically coupled carbon and nitrogen cycling in the MIcrobial-MIneral Carbon Stabilization model version 1.0 (MIMICS-CN v1.0), Geosci. Model Dev., 13, 4413–4434, https://doi.org/10.5194/gmd-13-4413-2020, 2020. a, b, c, d
Lawrence, D. M., Fisher, R. A., Koven, C. D., Oleson, K. W., Swenson, S. C., Bonan, G., Collier, N., Ghimire, B., van Kampenhout, L., Kennedy, D., Kluzek, E., Lawrence, P. J., Li, F., Li, H., Lombardozzi, D., Riley, W. J., Sacks, W. J., Shi, M., Vertenstein, M., Wieder, W. R., Xu, C., Ali, A. A., Badger, A. M., Bisht, G., van den Broeke, M., Brunke, M. A., Burns, S. P., Buzan, J., Clark, M., Craig, A., Dahlin, K., Drewniak, B., Fisher, J. B., Flanner, M., Fox, A. M., Gentine, P., Hoffman, F., Keppel-Aleks, G., Knox, R., Kumar, S., Lenaerts, J., Leung, L. R., Lipscomb, W. H., Lu, Y., Pandey, A., Pelletier, J. D., Perket, J., Randerson, J. T., Ricciuto, D. M., Sanderson, B. M., Slater, A., Subin, Z. M., Tang, J., Thomas, R. Q., Martin, M. V., and Zeng, X.: The Community Land Model Version 5: Description of New Features, Benchmarking, and Impact of Forcing Uncertainty, J. Adv. Model. Earth Sy., 11, 4245–4287, https://doi.org/10.1029/2018MS001583, 2019. a, b, c
Lindahl, B. D. and Tunlid, A.: Ectomycorrhizal fungi – potential organic matter decomposers, yet not saprotrophs, New Phytol., 205, 1443–1447, https://doi.org/10.1111/nph.13201 2015. a
Lorenz, M.: International co-operative programme on assessment and monitoring of air pollution effects on forests -ICP forests-, Water Air Soil Poll., 85, 1221–1226, 1995. a
Mooshammer, M., Wanek, W., Hämmerle, I., Fuchslueger, L., Hofhansl, F., Knoltsch, A., Schnecker, J., Takriti, M., Watzka, M., Wild, B., Keiblinger, K. M., Zechmeister-Boltenstern, S., and Richter, A.: Adjustment of microbial nitrogen use efficiency to carbon : nitrogen imbalances regulates soil nitrogen cycling, Nat. Commun., 5, 1–7, https://doi.org/10.1038/ncomms4694, 2014a. a, b
Mooshammer, M., Wanek, W., Zechmeister-Boltenstern, S., and Richter, A.: Stoichiometric imbalances between terrestrial decomposer communities and their resources: Mechanisms and implications of microbial adaptations to their resources, Front. Microbiol., 5, 22, https://doi.org/10.3389/fmicb.2014.00022, 2014b. a, b
Mouginot, C., Kawamura, R., Matulich, K. L., Berlemont, R., Allison, S. D., Amend, A. S., and Martiny, A. C.: Elemental stoichiometry of Fungi and Bacteria strains from grassland leaf litter, Soil Biol. Biochem., 76, 278–285, https://doi.org/10.1016/j.soilbio.2014.05.011, 2014. a, b
Parton, W. J., Stewart, J. W. B., and Cole, C. V.: Dynamics of C, N, P and S in grassland soils: a model, Biogeochemistry, 5, 109–131, https://doi.org/10.1007/BF02180320, 1988. a, b
Phillips, R. P., Meier, I. C., Bernhardt, E. S., Grandy, A. S., Wickings, K., and Finzi, A. C.: Roots and fungi accelerate carbon and nitrogen cycling in forests exposed to elevated CO2, Ecol. Lett., 15, 1042–1049, https://doi.org/10.1111/j.1461-0248.2012.01827.x, 2012. a
Pierson, D., Lohse, K. A., Wieder, W. R., Patton, N. R., Facer, J., de Graaff, M.-A., Georgiou, K., Seyfried, M. S., Flerchinger, G., and Will, R.: Optimizing process-based models to predict current and future soil organic carbon stocks at high-resolution, Sci. Rep.-UK, 12, 10824, https://doi.org/10.1038/S41598-022-14224-8, 2022. a, b, c
Soetaert, K. and Herman, P. M.: A practical guide to ecological modelling: using R as a simulation platform, Springer, https://doi.org/10.1007/978-1-4020-8624-3, 2009. a
Strand, L. T., Callesen, I., Dalsgaard, L., and de Wit, H. A.: Carbon and nitrogen stocks in Norwegian forest soils – the importance of soil formation, climate, and vegetation type for organic matter accumulation, Can. J. Forest Res., 46, 1459–1473, https://doi.org/10.1139/cjfr-2015-0467, 2016. a, b, c, d, e, f, g, h, i, j
Strickland, M. S. and Rousk, J.: Considering fungal : bacterial dominance in soils – Methods, controls, and ecosystem implications, Soil Biol. Biochem., 42, 1385–1395, https://doi.org/10.1016/j.soilbio.2010.05.007, 2010. a
Sulman, B. N., Phillips, R. P., Oishi, A. C., Shevliakova, E., and Pacala, S. W.: Microbe-driven turnover offsets mineral-mediated storage of soil carbon under elevated CO2, Nat. Clim. Change, 4, 1099–1102, https://doi.org/10.1038/nclimate2436, 2014. a, b
Sveistrup, T. E.: Retningslinjer for beskrivelse av jordprofil, Jord og Myr, http://hdl.handle.net/11250/2489357 (last access: 5 July 2023), 1984. a
Tang, J. and Riley, W. J.: Weaker soil carbon–climate feedbacks resulting from microbial and abiotic interactions, Nat. Clim. Change, 5, 56–60, https://doi.org/10.1038/nclimate2438, 2014. a
Tao, F., Huang, Y., Hungate, B. A., Manzoni, S., Frey, S. D., Schmidt, M. W. I., Reichstein, M., Carvalhais, N., Ciais, P., Jiang, L., Lehmann, J., Wang, Y.-P., Houlton, B. Z., Ahrens, B., Viatkin, K., Vargas, R., Yigini, Y., Omuto, C., Malik, A. A., Peralta, G., Cuevas-Corona, R., Di Paolo, L. E., Luotto, I., Liao, C., Liang, Y.-S., Saynes, V. S., Huang, X., and Luo, Y.: Microbial carbon use efficiency promotes global soil carbon storage, Nature, 618, 981–985, https://doi.org/10.1038/s41586-023-06042-3, 2023. a, b, c
Taylor, M. K., Lankau, R. A., and Wurzburger, N.: Mycorrhizal associations of trees have different indirect effects on organic matter decomposition, J. Ecol., 104, 1576–1584, https://doi.org/10.1111/1365-2745.12629, 2016. a
Todd-Brown, K. E. O., Hopkins, F. M., Kivlin, S. N., Talbot, J. M., and Allison, S. D.: A framework for representing microbial decomposition in coupled climate models, Biogeochemistry, 109, 19–33, https://doi.org/10.1007/s10533-011-9635-6, 2012. a
Tonjer, L. R., Thoen, E., Morgado, L., Botnen, S., Mundra, S., Nybakken, L., Bryn, A., and Kauserud, H.: Fungal community dynamics across a forest–alpine ecotone, Mol. Ecol., 30, 4926–4938, https://doi.org/10.1111/mec.16095, 2021. a
Treseder, K. K.: Nitrogen additions and microbial biomass: a meta-analysis of ecosystem studies, Ecol. Lett., 11, 1111–1120, https://doi.org/10.1111/J.1461-0248.2008.01230.X, 2008. a, b, c, d
Wallander, H., Nilsson, L. O., Hagerberg, D., and Rosengren, U.: Direct estimates of C:N ratios of ectomycorrhizal mycelia collected from Norway spruce forest soils, Soil Biol. Biochem., 35, 997–999, https://doi.org/10.1016/S0038-0717(03)00121-4, 2003. a
Wang, G., Post, W. M., and Mayes, M. A.: Development of microbial-enzyme-mediated decomposition model parameters through steady-state and dynamic analyses, Ecol. Appl., 23, 255–272, https://doi.org/10.1890/12-0681.1, 2013. a
Wang, Y.-P., Zhang, H., Ciais, P., Goll, D., Huang, Y., Wood, J. D., Ollinger, S. V., Tang, X., and Prescher, A.-K.: Microbial Activity and Root Carbon Inputs Are More Important than Soil Carbon Diffusion in Simulating Soil Carbon Profiles, J. Geophys. Res.-Biogeo., 126, e2020JG006205, https://doi.org/10.1029/2020JG006205, 2021. a
Wardle, D. A., Bardgett, R. D., Klironomos, J. N., Setälä, H., Van Der Putten, W. H., and Wall, D. H.: Ecological linkages between aboveground and belowground biota, Science, 304, 1629–1633, https://doi.org/10.1126/science.1094875, 2004. a
Wieder, W. R., Grandy, A. S., Kallenbach, C. M., Taylor, P. G., and Bonan, G. B.: Representing life in the Earth system with soil microbial functional traits in the MIMICS model, Geosci. Model Dev., 8, 1789–1808, https://doi.org/10.5194/gmd-8-1789-2015, 2015. a, b, c, d, e, f, g, h, i, j, k, l, m, n
Wieder, W. R., Hartman, M. D., Sulman, B. N., Wang, Y.-P., Koven, C. D., and Bonan, G. B.: Carbon cycle confidence and uncertainty: Exploring variation among soil biogeochemical models, Global Change Biol., 24, 1563–1579, https://doi.org/10.1111/gcb.13979, 2017. a, b, c
Yu, L., Ahrens, B., Wutzler, T., Schrumpf, M., and Zaehle, S.: Jena Soil Model (JSM v1.0; revision 1934): a microbial soil organic carbon model integrated with nitrogen and phosphorus processes, Geosci. Model Dev., 13, 783–803, https://doi.org/10.5194/gmd-13-783-2020, 2020. a
Short summary
By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
By including microbial processes in soil models, we learn how the soil system interacts with its...
