Articles | Volume 16, issue 9
https://doi.org/10.5194/gmd-16-2649-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-16-2649-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
17 May 2023
Model description paper |
| 17 May 2023
| 17 May 2023
The 3D biogeochemical marine mercury cycling model MERCY v2.0 – linking atmospheric Hg to methylmercury in fish
Johannes Bieser
CORRESPONDING AUTHOR
Institute of Coastal Systems – Analysis and Modeling, Helmholtz-Zentrum Hereon,
Max-Planck-Str. 1, 21502 Geesthacht, Germany
David J. Amptmeijer
Institute of Coastal Systems – Analysis and Modeling, Helmholtz-Zentrum Hereon,
Max-Planck-Str. 1, 21502 Geesthacht, Germany
Ute Daewel
Institute of Coastal Systems – Analysis and Modeling, Helmholtz-Zentrum Hereon,
Max-Planck-Str. 1, 21502 Geesthacht, Germany
Joachim Kuss
Department of Marine Chemistry, Leibniz Institute for Baltic Sea Research, Seestraße 15, 18119 Rostock, Germany
Anne L. Soerensen
Department of Environmental
Research and Monitoring, Swedish Museum of Natural History, Stockholm, Sweden
Corinna Schrum
Institute of Coastal Systems – Analysis and Modeling, Helmholtz-Zentrum Hereon,
Max-Planck-Str. 1, 21502 Geesthacht, Germany
Institute of Oceanography, Universität Hamburg, Mittelweg
177, 20146 Hamburg, Germany
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Atmos. Chem. Phys., 21, 15663–15697, https://doi.org/10.5194/acp-21-15663-2021, https://doi.org/10.5194/acp-21-15663-2021, 2021
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Atmos. Chem. Phys., 20, 10427–10439, https://doi.org/10.5194/acp-20-10427-2020, https://doi.org/10.5194/acp-20-10427-2020, 2020
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Gabriele Curci, Ummugulsum Alyuz, Rocio Barò, Roberto Bianconi, Johannes Bieser, Jesper H. Christensen, Augustin Colette, Aidan Farrow, Xavier Francis, Pedro Jiménez-Guerrero, Ulas Im, Peng Liu, Astrid Manders, Laura Palacios-Peña, Marje Prank, Luca Pozzoli, Ranjeet Sokhi, Efisio Solazzo, Paolo Tuccella, Alper Unal, Marta G. Vivanco, Christian Hogrefe, and Stefano Galmarini
Atmos. Chem. Phys., 19, 181–204, https://doi.org/10.5194/acp-19-181-2019, https://doi.org/10.5194/acp-19-181-2019, 2019
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Peng Liu, Christian Hogrefe, Ulas Im, Jesper H. Christensen, Johannes Bieser, Uarporn Nopmongcol, Greg Yarwood, Rohit Mathur, Shawn Roselle, and Tanya Spero
Atmos. Chem. Phys., 18, 17157–17175, https://doi.org/10.5194/acp-18-17157-2018, https://doi.org/10.5194/acp-18-17157-2018, 2018
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Marina Astitha, Ioannis Kioutsioukis, Ghezae Araya Fisseha, Roberto Bianconi, Johannes Bieser, Jesper H. Christensen, Owen R. Cooper, Stefano Galmarini, Christian Hogrefe, Ulas Im, Bryan Johnson, Peng Liu, Uarporn Nopmongcol, Irina Petropavlovskikh, Efisio Solazzo, David W. Tarasick, and Greg Yarwood
Atmos. Chem. Phys., 18, 13925–13945, https://doi.org/10.5194/acp-18-13925-2018, https://doi.org/10.5194/acp-18-13925-2018, 2018
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This work is unique in the detailed analyses of modeled ozone vertical profiles from sites in North America through the collaboration of four research groups from the US and EU. We assess the air quality models' performance and model inter-comparison for ozone vertical profiles and stratospheric ozone intrusions. Lastly, we designate the important role of lateral boundary conditions in the ozone vertical profiles using chemically inert tracers.
Franz Slemr, Andreas Weigelt, Ralf Ebinghaus, Johannes Bieser, Carl A. M. Brenninkmeijer, Armin Rauthe-Schöch, Markus Hermann, Bengt G. Martinsson, Peter van Velthoven, Harald Bönisch, Marco Neumaier, Andreas Zahn, and Helmut Ziereis
Atmos. Chem. Phys., 18, 12329–12343, https://doi.org/10.5194/acp-18-12329-2018, https://doi.org/10.5194/acp-18-12329-2018, 2018
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Marta G. Vivanco, Mark R. Theobald, Héctor García-Gómez, Juan Luis Garrido, Marje Prank, Wenche Aas, Mario Adani, Ummugulsum Alyuz, Camilla Andersson, Roberto Bellasio, Bertrand Bessagnet, Roberto Bianconi, Johannes Bieser, Jørgen Brandt, Gino Briganti, Andrea Cappelletti, Gabriele Curci, Jesper H. Christensen, Augustin Colette, Florian Couvidat, Cornelis Cuvelier, Massimo D'Isidoro, Johannes Flemming, Andrea Fraser, Camilla Geels, Kaj M. Hansen, Christian Hogrefe, Ulas Im, Oriol Jorba, Nutthida Kitwiroon, Astrid Manders, Mihaela Mircea, Noelia Otero, Maria-Teresa Pay, Luca Pozzoli, Efisio Solazzo, Svetlana Tsyro, Alper Unal, Peter Wind, and Stefano Galmarini
Atmos. Chem. Phys., 18, 10199–10218, https://doi.org/10.5194/acp-18-10199-2018, https://doi.org/10.5194/acp-18-10199-2018, 2018
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Ulas Im, Jesper Heile Christensen, Camilla Geels, Kaj Mantzius Hansen, Jørgen Brandt, Efisio Solazzo, Ummugulsum Alyuz, Alessandra Balzarini, Rocio Baro, Roberto Bellasio, Roberto Bianconi, Johannes Bieser, Augustin Colette, Gabriele Curci, Aidan Farrow, Johannes Flemming, Andrea Fraser, Pedro Jimenez-Guerrero, Nutthida Kitwiroon, Peng Liu, Uarporn Nopmongcol, Laura Palacios-Peña, Guido Pirovano, Luca Pozzoli, Marje Prank, Rebecca Rose, Ranjeet Sokhi, Paolo Tuccella, Alper Unal, Marta G. Vivanco, Greg Yarwood, Christian Hogrefe, and Stefano Galmarini
Atmos. Chem. Phys., 18, 8929–8952, https://doi.org/10.5194/acp-18-8929-2018, https://doi.org/10.5194/acp-18-8929-2018, 2018
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We evaluate the impact of global and regional anthropogenic emission reductions on major air pollutant levels over Europe and North America, using a multi-model ensemble of regional chemistry and transport models. Results show that ozone levels are largely driven by long-range transport over both continents while other pollutants such as carbon monoxide or aerosols are mainly controlled by domestic sources. Use of multi-model ensembles can help to reduce the uncertainties in individual models.
Stefano Galmarini, Ioannis Kioutsioukis, Efisio Solazzo, Ummugulsum Alyuz, Alessandra Balzarini, Roberto Bellasio, Anna M. K. Benedictow, Roberto Bianconi, Johannes Bieser, Joergen Brandt, Jesper H. Christensen, Augustin Colette, Gabriele Curci, Yanko Davila, Xinyi Dong, Johannes Flemming, Xavier Francis, Andrea Fraser, Joshua Fu, Daven K. Henze, Christian Hogrefe, Ulas Im, Marta Garcia Vivanco, Pedro Jiménez-Guerrero, Jan Eiof Jonson, Nutthida Kitwiroon, Astrid Manders, Rohit Mathur, Laura Palacios-Peña, Guido Pirovano, Luca Pozzoli, Marie Prank, Martin Schultz, Rajeet S. Sokhi, Kengo Sudo, Paolo Tuccella, Toshihiko Takemura, Takashi Sekiya, and Alper Unal
Atmos. Chem. Phys., 18, 8727–8744, https://doi.org/10.5194/acp-18-8727-2018, https://doi.org/10.5194/acp-18-8727-2018, 2018
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An ensemble of model results relating to ozone concentrations in Europe in 2010 has been produced and studied. The novelty consists in the fact that the ensemble is made of results of models working at two different scales (regional and global), therefore contributing in detail two different parts of the atmospheric spectrum. The ensemble defined as a hybrid has been studied in detail and shown to bring additional value to the assessment of air quality.
Ulas Im, Jørgen Brandt, Camilla Geels, Kaj Mantzius Hansen, Jesper Heile Christensen, Mikael Skou Andersen, Efisio Solazzo, Ioannis Kioutsioukis, Ummugulsum Alyuz, Alessandra Balzarini, Rocio Baro, Roberto Bellasio, Roberto Bianconi, Johannes Bieser, Augustin Colette, Gabriele Curci, Aidan Farrow, Johannes Flemming, Andrea Fraser, Pedro Jimenez-Guerrero, Nutthida Kitwiroon, Ciao-Kai Liang, Uarporn Nopmongcol, Guido Pirovano, Luca Pozzoli, Marje Prank, Rebecca Rose, Ranjeet Sokhi, Paolo Tuccella, Alper Unal, Marta Garcia Vivanco, Jason West, Greg Yarwood, Christian Hogrefe, and Stefano Galmarini
Atmos. Chem. Phys., 18, 5967–5989, https://doi.org/10.5194/acp-18-5967-2018, https://doi.org/10.5194/acp-18-5967-2018, 2018
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The impacts of air pollution on human health and their costs in Europe and the United States for the year 2010 ared modeled by a multi-model ensemble. In Europe, the number of premature deaths is calculated to be 414 000, while in the US it is estimated to be 160 000. Health impacts estimated by individual models can vary up to a factor of 3. Results show that the domestic emissions have the largest impact on premature deaths, compared to foreign sources.
Johannes Bieser, Franz Slemr, Jesse Ambrose, Carl Brenninkmeijer, Steve Brooks, Ashu Dastoor, Francesco DeSimone, Ralf Ebinghaus, Christian N. Gencarelli, Beate Geyer, Lynne E. Gratz, Ian M. Hedgecock, Daniel Jaffe, Paul Kelley, Che-Jen Lin, Lyatt Jaegle, Volker Matthias, Andrei Ryjkov, Noelle E. Selin, Shaojie Song, Oleg Travnikov, Andreas Weigelt, Winston Luke, Xinrong Ren, Andreas Zahn, Xin Yang, Yun Zhu, and Nicola Pirrone
Atmos. Chem. Phys., 17, 6925–6955, https://doi.org/10.5194/acp-17-6925-2017, https://doi.org/10.5194/acp-17-6925-2017, 2017
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We conducted a multi model study to investigate our ability to reproduce the vertical distribution of mercury in the atmosphere. For this, we used observational data from over 40 aircraft flights in EU and US. We compared observations to the results of seven chemistry transport models and found that the models are able to reproduce vertical gradients of total and elemental Hg. Finally, we found that different chemical reactions seem responsible for the oxidation of Hg depending on altitude.
Oleg Travnikov, Hélène Angot, Paulo Artaxo, Mariantonia Bencardino, Johannes Bieser, Francesco D'Amore, Ashu Dastoor, Francesco De Simone, María del Carmen Diéguez, Aurélien Dommergue, Ralf Ebinghaus, Xin Bin Feng, Christian N. Gencarelli, Ian M. Hedgecock, Olivier Magand, Lynwill Martin, Volker Matthias, Nikolay Mashyanov, Nicola Pirrone, Ramesh Ramachandran, Katie Alana Read, Andrei Ryjkov, Noelle E. Selin, Fabrizio Sena, Shaojie Song, Francesca Sprovieri, Dennis Wip, Ingvar Wängberg, and Xin Yang
Atmos. Chem. Phys., 17, 5271–5295, https://doi.org/10.5194/acp-17-5271-2017, https://doi.org/10.5194/acp-17-5271-2017, 2017
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The study provides a complex analysis of processes governing Hg fate in the atmosphere involving both measurement data and simulation results of chemical transport models. Evaluation of the model simulations and numerical experiments against observations allows explaining spatial and temporal variations of Hg concentration in the near-surface atmospheric layer and shows possibility of multiple pathways of Hg oxidation occurring concurrently in various parts of the atmosphere.
Efisio Solazzo, Roberto Bianconi, Christian Hogrefe, Gabriele Curci, Paolo Tuccella, Ummugulsum Alyuz, Alessandra Balzarini, Rocío Baró, Roberto Bellasio, Johannes Bieser, Jørgen Brandt, Jesper H. Christensen, Augistin Colette, Xavier Francis, Andrea Fraser, Marta Garcia Vivanco, Pedro Jiménez-Guerrero, Ulas Im, Astrid Manders, Uarporn Nopmongcol, Nutthida Kitwiroon, Guido Pirovano, Luca Pozzoli, Marje Prank, Ranjeet S. Sokhi, Alper Unal, Greg Yarwood, and Stefano Galmarini
Atmos. Chem. Phys., 17, 3001–3054, https://doi.org/10.5194/acp-17-3001-2017, https://doi.org/10.5194/acp-17-3001-2017, 2017
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As part of the third phase of AQMEII, this study uses timescale analysis to apportion error to the responsible processes, detect causes of model error, and identify the processes and scales that require dedicated investigations. The analysis tackles model performance gauging through measurement-to-model comparison, error decomposition, and time series analysis of model biases for ozone, CO, SO2, NO, NO2, PM10, PM2.5, wind speed, and temperature over Europe and North America.
Christian N. Gencarelli, Johannes Bieser, Francesco Carbone, Francesco De Simone, Ian M. Hedgecock, Volker Matthias, Oleg Travnikov, Xin Yang, and Nicola Pirrone
Atmos. Chem. Phys., 17, 627–643, https://doi.org/10.5194/acp-17-627-2017, https://doi.org/10.5194/acp-17-627-2017, 2017
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Atmospheric deposition is an important pathway by which Hg reaches marine ecosystems, where it can be methylated and enter the base of food chain. High resolution numerical experiments has been performed in order to investigate the contributions (sensitivity) of the Hg anthtropogenic emissions, speciation and atmospherical chemical reactions on Hg depositions over Europe. The comparison of wet deposition fluxes and concentrations measured on 28 monitioring sites were used to support the analysis.
Christos I. Efstathiou, Jana Matejovičová, Johannes Bieser, and Gerhard Lammel
Atmos. Chem. Phys., 16, 15327–15345, https://doi.org/10.5194/acp-16-15327-2016, https://doi.org/10.5194/acp-16-15327-2016, 2016
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Gas-particle partitioning is an important process that determines the fate and long-range transport potential of persistent organic pollutants. This work is the first effort to evaluate the behaviour of parameterizations within a regional air quality system adapted for Europe. Results corroborate the significance of the chosen implementation in predicting ambient levels and transport patterns. Implications point to improvements on the side of the emission inventories and aerosol module.
Andreas Weigelt, Franz Slemr, Ralf Ebinghaus, Nicola Pirrone, Johannes Bieser, Jan Bödewadt, Giulio Esposito, and Peter F. J. van Velthoven
Atmos. Chem. Phys., 16, 13653–13668, https://doi.org/10.5194/acp-16-13653-2016, https://doi.org/10.5194/acp-16-13653-2016, 2016
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Hg ∕ SO2, Hg ∕ CO, and NOx ∕ SO2 emission ratios (ERs) in the plume of the coal-fired power plant (CFPP), Lippendorf, near Leipzig in Germany, were determined in August 2013. GOM fraction of mercury emissions was also assessed. Measured Hg ∕ SO2 and Hg ∕ CO ERs were consistent with the ratios calculated from annual emissions in 2013 reported by the CFPP operator. The NOx ∕ SO2 ER was somewhat lower. GOM fractions of ~ 40 % of CFPP mercury emissions in current emission inventories are overestimated.
Bertrand Bessagnet, Guido Pirovano, Mihaela Mircea, Cornelius Cuvelier, Armin Aulinger, Giuseppe Calori, Giancarlo Ciarelli, Astrid Manders, Rainer Stern, Svetlana Tsyro, Marta García Vivanco, Philippe Thunis, Maria-Teresa Pay, Augustin Colette, Florian Couvidat, Frédérik Meleux, Laurence Rouïl, Anthony Ung, Sebnem Aksoyoglu, José María Baldasano, Johannes Bieser, Gino Briganti, Andrea Cappelletti, Massimo D'Isidoro, Sandro Finardi, Richard Kranenburg, Camillo Silibello, Claudio Carnevale, Wenche Aas, Jean-Charles Dupont, Hilde Fagerli, Lucia Gonzalez, Laurent Menut, André S. H. Prévôt, Pete Roberts, and Les White
Atmos. Chem. Phys., 16, 12667–12701, https://doi.org/10.5194/acp-16-12667-2016, https://doi.org/10.5194/acp-16-12667-2016, 2016
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The EURODELTA III exercise allows a very comprehensive intercomparison and evaluation of air quality models' performance. On average, the models provide a rather good picture of the particulate matter (PM) concentrations over Europe even if the highest concentrations are underestimated. The meteorology is responsible for model discrepancies, while the lack of emissions, particularly in winter, is mentioned as the main reason for the underestimations of PM.
Daniel Neumann, Volker Matthias, Johannes Bieser, Armin Aulinger, and Markus Quante
Atmos. Chem. Phys., 16, 9905–9933, https://doi.org/10.5194/acp-16-9905-2016, https://doi.org/10.5194/acp-16-9905-2016, 2016
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Atmospheric sea salt particles provide surface area for the condensation of gaseous substances and, thus, impact these substances' atmospheric residence time and chemical reactions. The number and size of sea salt particles govern the strength of these impacts. Therefore, these parameters should be reflected accurately in chemistry transport models. In this study, three different sea salt emission functions are compared in order to evaluate which one is best suited for the given model setup.
Andreas Weigelt, Ralf Ebinghaus, Nicola Pirrone, Johannes Bieser, Jan Bödewadt, Giulio Esposito, Franz Slemr, Peter F. J. van Velthoven, Andreas Zahn, and Helmut Ziereis
Atmos. Chem. Phys., 16, 4135–4146, https://doi.org/10.5194/acp-16-4135-2016, https://doi.org/10.5194/acp-16-4135-2016, 2016
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We show the first mercury profile measurements over Europe since 1996. Besides gaseous elemental mercury (GEM) and total gaseous mercury (TGM), the gases CO, SO2, NOx, and O3 were measured from aboard a research aircraft over four European locations. Compared to the boundary layer, the concentration of GEM and TGM in the free troposphere was 10–30% lower. Inside the individual layers no vertical gradient was apparent. Combined with CARIBIC data, a unique profile from 0.4 to 10.5 km is provided.
Daniel Neumann, Volker Matthias, Johannes Bieser, Armin Aulinger, and Markus Quante
Atmos. Chem. Phys., 16, 2921–2942, https://doi.org/10.5194/acp-16-2921-2016, https://doi.org/10.5194/acp-16-2921-2016, 2016
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Sea salt emissions were updated to be dependent on salinity which improved sodium predictions in the Baltic Sea region. The impact of sea salt on atmospheric nitrate and ammonium concentrations and on nitrogen deposition in the North and Baltic Sea region is assessed. Sea salt has a low effect on nitrate concentrations but does not improve them. 3 to 7 % of the nitrogen deposition into the North Sea is accounted to the presence of sea salt. In the Baltic Sea, the contribution is negligible.
V. Matthias, A. Aulinger, A. Backes, J. Bieser, B. Geyer, M. Quante, and M. Zeretzke
Atmos. Chem. Phys., 16, 759–776, https://doi.org/10.5194/acp-16-759-2016, https://doi.org/10.5194/acp-16-759-2016, 2016
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Scenarios for future shipping emissions in the North Sea were developed. Compared to today, the contribution of shipping to the nitrogen dioxide and ozone concentrations will increase due to the expected enhanced traffic by more than 20 % and 5 %, respectively, by 2030 if no regulation for further emission reductions is implemented. PM2.5 will decrease slightly because the sulfur content in ship fuels will be reduced.
A. Aulinger, V. Matthias, M. Zeretzke, J. Bieser, M. Quante, and A. Backes
Atmos. Chem. Phys., 16, 739–758, https://doi.org/10.5194/acp-16-739-2016, https://doi.org/10.5194/acp-16-739-2016, 2016
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A multi-model approach consisting of a bottom-up ship emissions model and a chemistry transport model was used to evaluate the impact of shipping on air quality in North Sea bordering countries. As an example, the results of the simulations indicated that the relative contribution of ships to NO2 concentration levels ashore close to the sea can reach up to 25 % in summer and 15 % in winter. Some hundred kilometers away from the sea, the contribution was about 6 % in summer and 4 % in winter.
J. Zhu, T. Wang, J. Bieser, and V. Matthias
Atmos. Chem. Phys., 15, 8767–8779, https://doi.org/10.5194/acp-15-8767-2015, https://doi.org/10.5194/acp-15-8767-2015, 2015
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This study estimated the contributions to mercury concentration and deposition in easter China from seven categories of emission sources by CMAQ-Hg. Also, this study focuses on diagnostic and process analyses for atmospheric mercury pollution formation and on identification of the dominant atmospheric processes for mercury.
Kubilay Timur Demir, Moritz Mathis, Jan Kossack, Feifei Liu, Ute Daewel, Christoph Stegert, Helmuth Thomas, and Corinna Schrum
Biogeosciences, 22, 2569–2599, https://doi.org/10.5194/bg-22-2569-2025, https://doi.org/10.5194/bg-22-2569-2025, 2025
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This study examines how variations in the ratios of carbon, nitrogen, and phosphorus in organic matter affect carbon cycling in the northwest European shelf seas. Traditional models with fixed ratios tend to underestimate biological carbon uptake. By integrating variable ratios into a regional model, we find that carbon dioxide uptake increases by 9 %–31 %. These results highlight the need to include variable ratios for accurate assessments of regional and global carbon cycles.
Hoa Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
Geosci. Model Dev., 18, 2961–2982, https://doi.org/10.5194/gmd-18-2961-2025, https://doi.org/10.5194/gmd-18-2961-2025, 2025
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Parameterization is key in modeling to reproduce observations well but is often done manually. This study presents a particle-swarm-optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, providing different insights into ecosystem dynamics, and (2) optimized model complexity.
Ashu Dastoor, Hélène Angot, Johannes Bieser, Flora Brocza, Brock Edwards, Aryeh Feinberg, Xinbin Feng, Benjamin Geyman, Charikleia Gournia, Yipeng He, Ian M. Hedgecock, Ilia Ilyin, Jane Kirk, Che-Jen Lin, Igor Lehnherr, Robert Mason, David McLagan, Marilena Muntean, Peter Rafaj, Eric M. Roy, Andrei Ryjkov, Noelle E. Selin, Francesco De Simone, Anne L. Soerensen, Frits Steenhuisen, Oleg Travnikov, Shuxiao Wang, Xun Wang, Simon Wilson, Rosa Wu, Qingru Wu, Yanxu Zhang, Jun Zhou, Wei Zhu, and Scott Zolkos
Geosci. Model Dev., 18, 2747–2860, https://doi.org/10.5194/gmd-18-2747-2025, https://doi.org/10.5194/gmd-18-2747-2025, 2025
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This paper introduces the Multi-Compartment Mercury (Hg) Modeling and Analysis Project (MCHgMAP) aimed at informing the effectiveness evaluations of two multilateral environmental agreements: the Minamata Convention on Mercury and the Convention on Long-Range Transboundary Air Pollution. The experimental design exploits a variety of models (atmospheric, land, oceanic ,and multimedia mass balance models) to assess the short- and long-term influences of anthropogenic Hg releases into the environment.
Alberto Elizalde, Naveed Akhtar, Beate Geyer, and Corinna Schrum
Wind Energ. Sci. Discuss., https://doi.org/10.5194/wes-2025-64, https://doi.org/10.5194/wes-2025-64, 2025
Preprint under review for WES
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As green energy demand rises, offshore wind farms in the North Sea are expanding. This study examines the uncertainties in power output predictions, considering turbine arrangements and weather conditions. Using an advanced climate model, we found that power output can vary by up to 13 %. These findings are vital for accurate economic and environmental planning. This research will contribute to a better understanding of the potential of offshore wind energy.
David Johannes Amptmeijer, Andrea Padilla, Sofia Modesti, Corinna Schrum, and Johannes Bieser
EGUsphere, https://doi.org/10.5194/egusphere-2025-1494, https://doi.org/10.5194/egusphere-2025-1494, 2025
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This paper combines a literature review with a 1D coupled Hg speciation and bioaccumulation model to assess how feeding strategy influences inorganic and methylmercury levels at the food web's base. We find that filter feeders have higher MeHg concentrations, while suspension feeders show very low MeHg. These results highlight feeding strategy as a key driver in MeHg bioaccumulation variability.
David Johannes Amptmeijer, Elena Mikhavee, Ute Daewel, Johannes Bieser, and Corinna Schrum
EGUsphere, https://doi.org/10.5194/egusphere-2025-1486, https://doi.org/10.5194/egusphere-2025-1486, 2025
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In this study, we analyze mercury bioaccumulation, including both methylated and inorganic Hg. While methylmercury is the primary toxin of concern, modeling inorganic Hg bioaccumulation reveals its role in marine mercury cycling. We find that bioaccumulation strongly influences mercury dynamics, increasing methylmercury levels. This effect is more pronounced in well-mixed coastal waters than in permanently stratified deep waters.
David Amptmeijer and Johannes Bieser
EGUsphere, https://doi.org/10.5194/egusphere-2025-312, https://doi.org/10.5194/egusphere-2025-312, 2025
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The mercury (Hg) form of most concern is monomethylmercury (MMHg⁺) due to its neurotoxicity and ability to bioaccumulate in seafood. Bioaccumulation in seafood occurs via bioconcentration (direct uptake) and biomagnification (trophic transfer). Our study separates these processes, showing that bioconcentration increases MMHg⁺ in high trophic level fish by 15 % per level, contributing 28–48 % of MMHg⁺ in Atlantic cod. These findings can be used to inform efficient Hg modeling strategies.
Feifei Liu, Ute Daewel, Jan Kossack, Kubilay Timur Demir, Helmuth Thomas, and Corinna Schrum
EGUsphere, https://doi.org/10.5194/egusphere-2025-81, https://doi.org/10.5194/egusphere-2025-81, 2025
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Ocean Alkalinity Enhancement boosts oceanic CO₂ absorption, offering a climate solution. Using a regional model, we examined OAE in the North Sea, revealing that shallow coastal areas achieve higher CO₂ uptake than offshore, where alkalinity is more susceptible to deep-ocean loss. Long-term carbon storage is limited, and pH shifts vary by location. Our findings guide OAE deployment to optimize carbon removal while minimizing ecological effects, supporting global climate mitigation efforts.
Koketso Michelle Molepo, Johannes Bieser, Alkuin Maximilian Koenig, Ian Michael Hedgecock, Ralf Ebinghaus, Aurélien Dommergue, Olivier Magand, Hélène Angot, Oleg Travnikov, Lynwill Martin, Casper Labuschagne, Katie Read, and Yann Bertrand
EGUsphere, https://doi.org/10.5194/egusphere-2024-3722, https://doi.org/10.5194/egusphere-2024-3722, 2024
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Mercury exchange between the ocean and atmosphere is poorly understood due to limited in situ data. Here, using atmospheric mercury observations from ground-based monitoring stations along with air mass trajectories, we found that atmospheric Hg levels increase with air mass ocean exposure time, matching predictions for ocean mercury emissions. This finding indicates that ocean emissions directly influence atmospheric mercury levels and enables us to estimate these emissions on a global scale.
Pascal Simon, Martin Otto Paul Ramacher, Stefan Hagemann, Volker Matthias, Hanna Joerss, and Johannes Bieser
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-236, https://doi.org/10.5194/essd-2024-236, 2024
Revised manuscript accepted for ESSD
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Per- and Polyfluorinated Alkyl Substances (PFAS) constitute a group of often toxic, persistent, and bioaccumulative substances. We constructed a global Emissions model and inventory based on multiple datasets for 23 widely used PFAS. The model computes temporally and spatially resolved model ready emissions distinguishing between emissions to air and emissions to water covering the time span from 1950 up until 2020 on an annual basis to be used for chemistry transport modelling.
Lucas Porz, Wenyan Zhang, Nils Christiansen, Jan Kossack, Ute Daewel, and Corinna Schrum
Biogeosciences, 21, 2547–2570, https://doi.org/10.5194/bg-21-2547-2024, https://doi.org/10.5194/bg-21-2547-2024, 2024
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Seafloor sediments store a large amount of carbon, helping to naturally regulate Earth's climate. If disturbed, some sediment particles can turn into CO2, but this effect is not well understood. Using computer simulations, we found that bottom-contacting fishing gears release about 1 million tons of CO2 per year in the North Sea, one of the most heavily fished regions globally. We show how protecting certain areas could reduce these emissions while also benefitting seafloor-living animals.
Peter Arlinghaus, Corinna Schrum, Ingrid Kröncke, and Wenyan Zhang
Earth Surf. Dynam., 12, 537–558, https://doi.org/10.5194/esurf-12-537-2024, https://doi.org/10.5194/esurf-12-537-2024, 2024
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Benthos is recognized to strongly influence sediment stability, deposition, and erosion. This is well studied on small scales, but large-scale impact on morphological change is largely unknown. We quantify the large-scale impact of benthos by modeling the evolution of a tidal basin. Results indicate a profound impact of benthos by redistributing sediments on large scales. As confirmed by measurements, including benthos significantly improves model results compared to an abiotic scenario.
Philipp Heinrich, Stefan Hagemann, Ralf Weisse, Corinna Schrum, Ute Daewel, and Lidia Gaslikova
Nat. Hazards Earth Syst. Sci., 23, 1967–1985, https://doi.org/10.5194/nhess-23-1967-2023, https://doi.org/10.5194/nhess-23-1967-2023, 2023
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High seawater levels co-occurring with high river discharges have the potential to cause destructive flooding. For the past decades, the number of such compound events was larger than expected by pure chance for most of the west-facing coasts in Europe. Additionally rivers with smaller catchments showed higher numbers. In most cases, such events were associated with a large-scale weather pattern characterized by westerly winds and strong rainfall.
Veli Çağlar Yumruktepe, Annette Samuelsen, and Ute Daewel
Geosci. Model Dev., 15, 3901–3921, https://doi.org/10.5194/gmd-15-3901-2022, https://doi.org/10.5194/gmd-15-3901-2022, 2022
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We describe the coupled bio-physical model ECOSMO II(CHL), which is used for regional configurations for the North Atlantic and the Arctic hind-casting and operational purposes. The model is consistent with the large-scale climatological nutrient settings and is capable of representing regional and seasonal changes, and model primary production agrees with previous measurements. For the users of this model, this paper provides the underlying science, model evaluation and its development.
Danilo Custódio, Katrine Aspmo Pfaffhuber, T. Gerard Spain, Fidel F. Pankratov, Iana Strigunova, Koketso Molepo, Henrik Skov, Johannes Bieser, and Ralf Ebinghaus
Atmos. Chem. Phys., 22, 3827–3840, https://doi.org/10.5194/acp-22-3827-2022, https://doi.org/10.5194/acp-22-3827-2022, 2022
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As a poison in the air that we breathe and the food that we eat, mercury is a human health concern for society as a whole. In that regard, this work deals with monitoring and modelling mercury in the environment, improving wherewithal, identifying the strength of the different components at play, and interpreting information to support the efforts that seek to safeguard public health.
Stefano Galmarini, Paul Makar, Olivia E. Clifton, Christian Hogrefe, Jesse O. Bash, Roberto Bellasio, Roberto Bianconi, Johannes Bieser, Tim Butler, Jason Ducker, Johannes Flemming, Alma Hodzic, Christopher D. Holmes, Ioannis Kioutsioukis, Richard Kranenburg, Aurelia Lupascu, Juan Luis Perez-Camanyo, Jonathan Pleim, Young-Hee Ryu, Roberto San Jose, Donna Schwede, Sam Silva, and Ralf Wolke
Atmos. Chem. Phys., 21, 15663–15697, https://doi.org/10.5194/acp-21-15663-2021, https://doi.org/10.5194/acp-21-15663-2021, 2021
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This technical note presents the research protocols for phase 4 of the Air Quality Model Evaluation International Initiative (AQMEII4). This initiative has three goals: (i) to define the state of wet and dry deposition in regional models, (ii) to evaluate how dry deposition influences air concentration and flux predictions, and (iii) to identify the causes for prediction differences. The evaluation compares LULC-specific dry deposition and effective conductances and fluxes.
Johannes Bieser, Hélène Angot, Franz Slemr, and Lynwill Martin
Atmos. Chem. Phys., 20, 10427–10439, https://doi.org/10.5194/acp-20-10427-2020, https://doi.org/10.5194/acp-20-10427-2020, 2020
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We use numerical models to determine the origin of air masses measured for elemental gaseous mercury (GEM) at Cape Point (CPT), South Africa. Our analysis is based on 10 years of hourly GEM measurements at CPT from 2007 to 2016. Based on GEM concentration and the origin of the air mass, we identify source and sink regions at CPT. We find, that the warm Agulhas Current to the south-east is the major Hg source and the continent the major sink.
Danilo Custodio, Ralf Ebinghaus, T. Gerard Spain, and Johannes Bieser
Atmos. Chem. Phys., 20, 7929–7939, https://doi.org/10.5194/acp-20-7929-2020, https://doi.org/10.5194/acp-20-7929-2020, 2020
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Using a stereo algorithm, we reconstructed 99.9 % of the total atmospheric gas mercury and presented a new insight into atmospheric mercury source assessing, which can have great relevance for policy and regulations in light of the Minamata convention.
Franz Slemr, Lynwill Martin, Casper Labuschagne, Thumeka Mkololo, Hélène Angot, Olivier Magand, Aurélien Dommergue, Philippe Garat, Michel Ramonet, and Johannes Bieser
Atmos. Chem. Phys., 20, 7683–7692, https://doi.org/10.5194/acp-20-7683-2020, https://doi.org/10.5194/acp-20-7683-2020, 2020
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Monitoring of atmospheric mercury (Hg) concentrations is an important part of the effectiveness evaluation of the Minamata Convention on Hg. Hg concentrations in 2012–2017 at Cape Point, South Africa, and at Amsterdam Island in the remote Indian Ocean are comparable, and no trend or a slightly downward trend was observed at both stations. Over the 2007–2017 period an upward trend was observed at CPT which was driven mainly by the 2007–2014 data. The trend and its change are discussed.
Laurie M. Charrieau, Karl Ljung, Frederik Schenk, Ute Daewel, Emma Kritzberg, and Helena L. Filipsson
Biogeosciences, 16, 3835–3852, https://doi.org/10.5194/bg-16-3835-2019, https://doi.org/10.5194/bg-16-3835-2019, 2019
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We reconstructed environmental changes in the Öresund during the last 200 years, using foraminifera (microfossils), sediment, and climate data. Five zones were identified, reflecting oxygen, salinity, food content, and pollution levels for each period. The largest changes occurred ~ 1950, towards stronger currents. The foraminifera responded quickly (< 10 years) to the changes. Moreover, they did not rebound when the system returned to the previous pattern, but displayed a new equilibrium state.
Martin Otto Paul Ramacher, Matthias Karl, Johannes Bieser, Jukka-Pekka Jalkanen, and Lasse Johansson
Atmos. Chem. Phys., 19, 9153–9179, https://doi.org/10.5194/acp-19-9153-2019, https://doi.org/10.5194/acp-19-9153-2019, 2019
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We simulated the impact of NOx shipping emissions on air quality and exposure in the Baltic Sea harbour cities Rostock (Germany), Riga (Latvia) and Gdańsk–Gdynia (Poland) for 2012. We found that local shipping affects total NO2, with contributions of 22 %, 11 % and 16 % in Rostock, Riga and Gdańsk–Gdynia. Exposure to NO2 from all emission sources was highest at home addresses (54 %–59 %). Emissions from shipping have a high impact on NO2 exposure in the port area (50 %–80 %).
Johannes Pein, Annika Eisele, Richard Hofmeister, Tina Sanders, Ute Daewel, Emil V. Stanev, Justus van Beusekom, Joanna Staneva, and Corinna Schrum
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-265, https://doi.org/10.5194/bg-2019-265, 2019
Revised manuscript not accepted
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The Elbe estuary is subject to vigorous tidal forcing from the sea side and considerable biological inputs from the land side. Our 3D numerical coupled physical-biogeochemical integrates these forcing signals and provides highly realistic hindcasts of the associated dynamics. Model simulations show that the freshwater part of Elbe estuary is inhabited by plankton. According to simulations these organism play a key role in converting organic inputs into nitrate, the major inorganic nutrient.
Ute Daewel, Corinna Schrum, and Jed I. Macdonald
Geosci. Model Dev., 12, 1765–1789, https://doi.org/10.5194/gmd-12-1765-2019, https://doi.org/10.5194/gmd-12-1765-2019, 2019
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Here we propose a novel modelling approach that includes an extended food web in a functional-group-type marine ecosystem model (ECOSMO E2E) by formulating new groups for macrobenthos and fish. This enables the estimation of the dynamics of the higher-trophic-level production potential and constitutes a more consistent closure term for the lower-trophic-level ecosystem. Thus, the model allows for the study of the control mechanisms for marine ecosystems at a high spatial and temporal resolution.
Changjin Zhao, Ute Daewel, and Corinna Schrum
Earth Syst. Dynam., 10, 287–317, https://doi.org/10.5194/esd-10-287-2019, https://doi.org/10.5194/esd-10-287-2019, 2019
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Our study highlights the importance of tides in controlling the spatial and temporal distributions North Sea primary production based on numerical experiments. We identified two different response chains acting in different regions of the North Sea. (i) In the southern shallow areas, strong tidal mixing dilutes phytoplankton concentrations and increases turbidity, thus decreasing NPP. (ii) In the frontal regions, tidal mixing infuses nutrients into the surface mixed layer, thus increasing NPP.
Matthias Karl, Johannes Bieser, Beate Geyer, Volker Matthias, Jukka-Pekka Jalkanen, Lasse Johansson, and Erik Fridell
Atmos. Chem. Phys., 19, 1721–1752, https://doi.org/10.5194/acp-19-1721-2019, https://doi.org/10.5194/acp-19-1721-2019, 2019
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Air emissions of nitrogen oxides from ship traffic in the Baltic Sea are a health concern in coastal areas of the Baltic Sea region. We find that the introduction of the nitrogen emission control area (NECA) is critical for reducing ship emissions of nitrogen oxides to levels that are low enough to sustainably dampen ozone production. The decline of the ship-related nitrogen deposition to the Baltic Sea between 2012 and 2040 varies between 46 % and 78 % in different regulation scenarios.
Gabriele Curci, Ummugulsum Alyuz, Rocio Barò, Roberto Bianconi, Johannes Bieser, Jesper H. Christensen, Augustin Colette, Aidan Farrow, Xavier Francis, Pedro Jiménez-Guerrero, Ulas Im, Peng Liu, Astrid Manders, Laura Palacios-Peña, Marje Prank, Luca Pozzoli, Ranjeet Sokhi, Efisio Solazzo, Paolo Tuccella, Alper Unal, Marta G. Vivanco, Christian Hogrefe, and Stefano Galmarini
Atmos. Chem. Phys., 19, 181–204, https://doi.org/10.5194/acp-19-181-2019, https://doi.org/10.5194/acp-19-181-2019, 2019
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Atmospheric carbonaceous aerosols are able to absorb solar radiation and they continue to contribute some of the largest uncertainties in projected climate change. One important detail is how the chemical species are arranged inside each particle, i.e. the knowledge of their mixing state. We use an ensemble of regional model simulations to test different mixing state assumptions and found that a combination of internal and external mixing may better reproduce sunphotometer observations.
Peng Liu, Christian Hogrefe, Ulas Im, Jesper H. Christensen, Johannes Bieser, Uarporn Nopmongcol, Greg Yarwood, Rohit Mathur, Shawn Roselle, and Tanya Spero
Atmos. Chem. Phys., 18, 17157–17175, https://doi.org/10.5194/acp-18-17157-2018, https://doi.org/10.5194/acp-18-17157-2018, 2018
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This study represents an intercomparison of four regional-scale air quality simulations in order to understand the model similarities and differences in estimating the impact of ozone imported from outside of the US on the surface ozone within the US at process level. Vertical turbulent mixing stands out as a primary contributor to the model differences in inert tracers.
Marina Astitha, Ioannis Kioutsioukis, Ghezae Araya Fisseha, Roberto Bianconi, Johannes Bieser, Jesper H. Christensen, Owen R. Cooper, Stefano Galmarini, Christian Hogrefe, Ulas Im, Bryan Johnson, Peng Liu, Uarporn Nopmongcol, Irina Petropavlovskikh, Efisio Solazzo, David W. Tarasick, and Greg Yarwood
Atmos. Chem. Phys., 18, 13925–13945, https://doi.org/10.5194/acp-18-13925-2018, https://doi.org/10.5194/acp-18-13925-2018, 2018
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This work is unique in the detailed analyses of modeled ozone vertical profiles from sites in North America through the collaboration of four research groups from the US and EU. We assess the air quality models' performance and model inter-comparison for ozone vertical profiles and stratospheric ozone intrusions. Lastly, we designate the important role of lateral boundary conditions in the ozone vertical profiles using chemically inert tracers.
Franz Slemr, Andreas Weigelt, Ralf Ebinghaus, Johannes Bieser, Carl A. M. Brenninkmeijer, Armin Rauthe-Schöch, Markus Hermann, Bengt G. Martinsson, Peter van Velthoven, Harald Bönisch, Marco Neumaier, Andreas Zahn, and Helmut Ziereis
Atmos. Chem. Phys., 18, 12329–12343, https://doi.org/10.5194/acp-18-12329-2018, https://doi.org/10.5194/acp-18-12329-2018, 2018
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Total and elemental mercury were measured in the upper troposphere and lower stratosphere onboard a passenger aircraft. Their concentrations in the upper troposphere were comparable implying low concentrations of oxidized mercury in this region. Large scale seasonally dependent influence of emissions from biomass burning was also observed. Their distributions in the lower stratosphere implies a long stratospheric lifetime, which precludes significant mercury oxidation by ozone.
Marta G. Vivanco, Mark R. Theobald, Héctor García-Gómez, Juan Luis Garrido, Marje Prank, Wenche Aas, Mario Adani, Ummugulsum Alyuz, Camilla Andersson, Roberto Bellasio, Bertrand Bessagnet, Roberto Bianconi, Johannes Bieser, Jørgen Brandt, Gino Briganti, Andrea Cappelletti, Gabriele Curci, Jesper H. Christensen, Augustin Colette, Florian Couvidat, Cornelis Cuvelier, Massimo D'Isidoro, Johannes Flemming, Andrea Fraser, Camilla Geels, Kaj M. Hansen, Christian Hogrefe, Ulas Im, Oriol Jorba, Nutthida Kitwiroon, Astrid Manders, Mihaela Mircea, Noelia Otero, Maria-Teresa Pay, Luca Pozzoli, Efisio Solazzo, Svetlana Tsyro, Alper Unal, Peter Wind, and Stefano Galmarini
Atmos. Chem. Phys., 18, 10199–10218, https://doi.org/10.5194/acp-18-10199-2018, https://doi.org/10.5194/acp-18-10199-2018, 2018
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European wet and dry atmospheric deposition of N and S estimated by 14 air quality models was found to vary substantially. An ensemble of models meeting acceptability criteria was used to estimate the exceedances of the critical loads for N in habitats within the Natura 2000 network, as well as their lower and upper limits. Scenarios with 20 % emission reductions in different regions of the world showed that European emissions are responsible for most of the N and S deposition in Europe.
Ulas Im, Jesper Heile Christensen, Camilla Geels, Kaj Mantzius Hansen, Jørgen Brandt, Efisio Solazzo, Ummugulsum Alyuz, Alessandra Balzarini, Rocio Baro, Roberto Bellasio, Roberto Bianconi, Johannes Bieser, Augustin Colette, Gabriele Curci, Aidan Farrow, Johannes Flemming, Andrea Fraser, Pedro Jimenez-Guerrero, Nutthida Kitwiroon, Peng Liu, Uarporn Nopmongcol, Laura Palacios-Peña, Guido Pirovano, Luca Pozzoli, Marje Prank, Rebecca Rose, Ranjeet Sokhi, Paolo Tuccella, Alper Unal, Marta G. Vivanco, Greg Yarwood, Christian Hogrefe, and Stefano Galmarini
Atmos. Chem. Phys., 18, 8929–8952, https://doi.org/10.5194/acp-18-8929-2018, https://doi.org/10.5194/acp-18-8929-2018, 2018
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We evaluate the impact of global and regional anthropogenic emission reductions on major air pollutant levels over Europe and North America, using a multi-model ensemble of regional chemistry and transport models. Results show that ozone levels are largely driven by long-range transport over both continents while other pollutants such as carbon monoxide or aerosols are mainly controlled by domestic sources. Use of multi-model ensembles can help to reduce the uncertainties in individual models.
Stefano Galmarini, Ioannis Kioutsioukis, Efisio Solazzo, Ummugulsum Alyuz, Alessandra Balzarini, Roberto Bellasio, Anna M. K. Benedictow, Roberto Bianconi, Johannes Bieser, Joergen Brandt, Jesper H. Christensen, Augustin Colette, Gabriele Curci, Yanko Davila, Xinyi Dong, Johannes Flemming, Xavier Francis, Andrea Fraser, Joshua Fu, Daven K. Henze, Christian Hogrefe, Ulas Im, Marta Garcia Vivanco, Pedro Jiménez-Guerrero, Jan Eiof Jonson, Nutthida Kitwiroon, Astrid Manders, Rohit Mathur, Laura Palacios-Peña, Guido Pirovano, Luca Pozzoli, Marie Prank, Martin Schultz, Rajeet S. Sokhi, Kengo Sudo, Paolo Tuccella, Toshihiko Takemura, Takashi Sekiya, and Alper Unal
Atmos. Chem. Phys., 18, 8727–8744, https://doi.org/10.5194/acp-18-8727-2018, https://doi.org/10.5194/acp-18-8727-2018, 2018
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An ensemble of model results relating to ozone concentrations in Europe in 2010 has been produced and studied. The novelty consists in the fact that the ensemble is made of results of models working at two different scales (regional and global), therefore contributing in detail two different parts of the atmospheric spectrum. The ensemble defined as a hybrid has been studied in detail and shown to bring additional value to the assessment of air quality.
Ulas Im, Jørgen Brandt, Camilla Geels, Kaj Mantzius Hansen, Jesper Heile Christensen, Mikael Skou Andersen, Efisio Solazzo, Ioannis Kioutsioukis, Ummugulsum Alyuz, Alessandra Balzarini, Rocio Baro, Roberto Bellasio, Roberto Bianconi, Johannes Bieser, Augustin Colette, Gabriele Curci, Aidan Farrow, Johannes Flemming, Andrea Fraser, Pedro Jimenez-Guerrero, Nutthida Kitwiroon, Ciao-Kai Liang, Uarporn Nopmongcol, Guido Pirovano, Luca Pozzoli, Marje Prank, Rebecca Rose, Ranjeet Sokhi, Paolo Tuccella, Alper Unal, Marta Garcia Vivanco, Jason West, Greg Yarwood, Christian Hogrefe, and Stefano Galmarini
Atmos. Chem. Phys., 18, 5967–5989, https://doi.org/10.5194/acp-18-5967-2018, https://doi.org/10.5194/acp-18-5967-2018, 2018
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The impacts of air pollution on human health and their costs in Europe and the United States for the year 2010 ared modeled by a multi-model ensemble. In Europe, the number of premature deaths is calculated to be 414 000, while in the US it is estimated to be 160 000. Health impacts estimated by individual models can vary up to a factor of 3. Results show that the domestic emissions have the largest impact on premature deaths, compared to foreign sources.
Joachim Kuss, Siegfried Krüger, Johann Ruickoldt, and Klaus-Peter Wlost
Atmos. Chem. Phys., 18, 4361–4376, https://doi.org/10.5194/acp-18-4361-2018, https://doi.org/10.5194/acp-18-4361-2018, 2018
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The emission of volatile elemental mercury by the sea is an important source of atmospheric mercury. The light-induced biotic and abiotic transformation of deposited ionic mercury to elemental mercury in surface water is highly variable. On research campaigns in the Baltic Sea a new method was applied to measure elemental mercury at high resolution. The Baltic Sea's mercury emission was subsequently calculated based on the new data and the current knowledge of mercury gas exchange parameters.
Ute Daewel and Corinna Schrum
Earth Syst. Dynam., 8, 801–815, https://doi.org/10.5194/esd-8-801-2017, https://doi.org/10.5194/esd-8-801-2017, 2017
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Processes behind observed long-term variations in marine ecosystems are difficult to be deduced from in situ observations only. By statistically analysing a 61-year model simulation for the North Sea and Baltic Sea and additional model scenarios, we identified major modes of variability in the environmental variables and associated those with changes in primary production. We found that the dominant impact on changes in ecosystem productivity was introduced by modulations of the wind fields.
Johannes Bieser, Franz Slemr, Jesse Ambrose, Carl Brenninkmeijer, Steve Brooks, Ashu Dastoor, Francesco DeSimone, Ralf Ebinghaus, Christian N. Gencarelli, Beate Geyer, Lynne E. Gratz, Ian M. Hedgecock, Daniel Jaffe, Paul Kelley, Che-Jen Lin, Lyatt Jaegle, Volker Matthias, Andrei Ryjkov, Noelle E. Selin, Shaojie Song, Oleg Travnikov, Andreas Weigelt, Winston Luke, Xinrong Ren, Andreas Zahn, Xin Yang, Yun Zhu, and Nicola Pirrone
Atmos. Chem. Phys., 17, 6925–6955, https://doi.org/10.5194/acp-17-6925-2017, https://doi.org/10.5194/acp-17-6925-2017, 2017
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We conducted a multi model study to investigate our ability to reproduce the vertical distribution of mercury in the atmosphere. For this, we used observational data from over 40 aircraft flights in EU and US. We compared observations to the results of seven chemistry transport models and found that the models are able to reproduce vertical gradients of total and elemental Hg. Finally, we found that different chemical reactions seem responsible for the oxidation of Hg depending on altitude.
Oleg Travnikov, Hélène Angot, Paulo Artaxo, Mariantonia Bencardino, Johannes Bieser, Francesco D'Amore, Ashu Dastoor, Francesco De Simone, María del Carmen Diéguez, Aurélien Dommergue, Ralf Ebinghaus, Xin Bin Feng, Christian N. Gencarelli, Ian M. Hedgecock, Olivier Magand, Lynwill Martin, Volker Matthias, Nikolay Mashyanov, Nicola Pirrone, Ramesh Ramachandran, Katie Alana Read, Andrei Ryjkov, Noelle E. Selin, Fabrizio Sena, Shaojie Song, Francesca Sprovieri, Dennis Wip, Ingvar Wängberg, and Xin Yang
Atmos. Chem. Phys., 17, 5271–5295, https://doi.org/10.5194/acp-17-5271-2017, https://doi.org/10.5194/acp-17-5271-2017, 2017
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The study provides a complex analysis of processes governing Hg fate in the atmosphere involving both measurement data and simulation results of chemical transport models. Evaluation of the model simulations and numerical experiments against observations allows explaining spatial and temporal variations of Hg concentration in the near-surface atmospheric layer and shows possibility of multiple pathways of Hg oxidation occurring concurrently in various parts of the atmosphere.
Efisio Solazzo, Roberto Bianconi, Christian Hogrefe, Gabriele Curci, Paolo Tuccella, Ummugulsum Alyuz, Alessandra Balzarini, Rocío Baró, Roberto Bellasio, Johannes Bieser, Jørgen Brandt, Jesper H. Christensen, Augistin Colette, Xavier Francis, Andrea Fraser, Marta Garcia Vivanco, Pedro Jiménez-Guerrero, Ulas Im, Astrid Manders, Uarporn Nopmongcol, Nutthida Kitwiroon, Guido Pirovano, Luca Pozzoli, Marje Prank, Ranjeet S. Sokhi, Alper Unal, Greg Yarwood, and Stefano Galmarini
Atmos. Chem. Phys., 17, 3001–3054, https://doi.org/10.5194/acp-17-3001-2017, https://doi.org/10.5194/acp-17-3001-2017, 2017
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As part of the third phase of AQMEII, this study uses timescale analysis to apportion error to the responsible processes, detect causes of model error, and identify the processes and scales that require dedicated investigations. The analysis tackles model performance gauging through measurement-to-model comparison, error decomposition, and time series analysis of model biases for ozone, CO, SO2, NO, NO2, PM10, PM2.5, wind speed, and temperature over Europe and North America.
Christian N. Gencarelli, Johannes Bieser, Francesco Carbone, Francesco De Simone, Ian M. Hedgecock, Volker Matthias, Oleg Travnikov, Xin Yang, and Nicola Pirrone
Atmos. Chem. Phys., 17, 627–643, https://doi.org/10.5194/acp-17-627-2017, https://doi.org/10.5194/acp-17-627-2017, 2017
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Atmospheric deposition is an important pathway by which Hg reaches marine ecosystems, where it can be methylated and enter the base of food chain. High resolution numerical experiments has been performed in order to investigate the contributions (sensitivity) of the Hg anthtropogenic emissions, speciation and atmospherical chemical reactions on Hg depositions over Europe. The comparison of wet deposition fluxes and concentrations measured on 28 monitioring sites were used to support the analysis.
Christos I. Efstathiou, Jana Matejovičová, Johannes Bieser, and Gerhard Lammel
Atmos. Chem. Phys., 16, 15327–15345, https://doi.org/10.5194/acp-16-15327-2016, https://doi.org/10.5194/acp-16-15327-2016, 2016
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Gas-particle partitioning is an important process that determines the fate and long-range transport potential of persistent organic pollutants. This work is the first effort to evaluate the behaviour of parameterizations within a regional air quality system adapted for Europe. Results corroborate the significance of the chosen implementation in predicting ambient levels and transport patterns. Implications point to improvements on the side of the emission inventories and aerosol module.
Andreas Weigelt, Franz Slemr, Ralf Ebinghaus, Nicola Pirrone, Johannes Bieser, Jan Bödewadt, Giulio Esposito, and Peter F. J. van Velthoven
Atmos. Chem. Phys., 16, 13653–13668, https://doi.org/10.5194/acp-16-13653-2016, https://doi.org/10.5194/acp-16-13653-2016, 2016
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Hg ∕ SO2, Hg ∕ CO, and NOx ∕ SO2 emission ratios (ERs) in the plume of the coal-fired power plant (CFPP), Lippendorf, near Leipzig in Germany, were determined in August 2013. GOM fraction of mercury emissions was also assessed. Measured Hg ∕ SO2 and Hg ∕ CO ERs were consistent with the ratios calculated from annual emissions in 2013 reported by the CFPP operator. The NOx ∕ SO2 ER was somewhat lower. GOM fractions of ~ 40 % of CFPP mercury emissions in current emission inventories are overestimated.
Bertrand Bessagnet, Guido Pirovano, Mihaela Mircea, Cornelius Cuvelier, Armin Aulinger, Giuseppe Calori, Giancarlo Ciarelli, Astrid Manders, Rainer Stern, Svetlana Tsyro, Marta García Vivanco, Philippe Thunis, Maria-Teresa Pay, Augustin Colette, Florian Couvidat, Frédérik Meleux, Laurence Rouïl, Anthony Ung, Sebnem Aksoyoglu, José María Baldasano, Johannes Bieser, Gino Briganti, Andrea Cappelletti, Massimo D'Isidoro, Sandro Finardi, Richard Kranenburg, Camillo Silibello, Claudio Carnevale, Wenche Aas, Jean-Charles Dupont, Hilde Fagerli, Lucia Gonzalez, Laurent Menut, André S. H. Prévôt, Pete Roberts, and Les White
Atmos. Chem. Phys., 16, 12667–12701, https://doi.org/10.5194/acp-16-12667-2016, https://doi.org/10.5194/acp-16-12667-2016, 2016
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The EURODELTA III exercise allows a very comprehensive intercomparison and evaluation of air quality models' performance. On average, the models provide a rather good picture of the particulate matter (PM) concentrations over Europe even if the highest concentrations are underestimated. The meteorology is responsible for model discrepancies, while the lack of emissions, particularly in winter, is mentioned as the main reason for the underestimations of PM.
Daniel Neumann, Volker Matthias, Johannes Bieser, Armin Aulinger, and Markus Quante
Atmos. Chem. Phys., 16, 9905–9933, https://doi.org/10.5194/acp-16-9905-2016, https://doi.org/10.5194/acp-16-9905-2016, 2016
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Atmospheric sea salt particles provide surface area for the condensation of gaseous substances and, thus, impact these substances' atmospheric residence time and chemical reactions. The number and size of sea salt particles govern the strength of these impacts. Therefore, these parameters should be reflected accurately in chemistry transport models. In this study, three different sea salt emission functions are compared in order to evaluate which one is best suited for the given model setup.
Andreas Weigelt, Ralf Ebinghaus, Nicola Pirrone, Johannes Bieser, Jan Bödewadt, Giulio Esposito, Franz Slemr, Peter F. J. van Velthoven, Andreas Zahn, and Helmut Ziereis
Atmos. Chem. Phys., 16, 4135–4146, https://doi.org/10.5194/acp-16-4135-2016, https://doi.org/10.5194/acp-16-4135-2016, 2016
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We show the first mercury profile measurements over Europe since 1996. Besides gaseous elemental mercury (GEM) and total gaseous mercury (TGM), the gases CO, SO2, NOx, and O3 were measured from aboard a research aircraft over four European locations. Compared to the boundary layer, the concentration of GEM and TGM in the free troposphere was 10–30% lower. Inside the individual layers no vertical gradient was apparent. Combined with CARIBIC data, a unique profile from 0.4 to 10.5 km is provided.
Daniel Neumann, Volker Matthias, Johannes Bieser, Armin Aulinger, and Markus Quante
Atmos. Chem. Phys., 16, 2921–2942, https://doi.org/10.5194/acp-16-2921-2016, https://doi.org/10.5194/acp-16-2921-2016, 2016
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Sea salt emissions were updated to be dependent on salinity which improved sodium predictions in the Baltic Sea region. The impact of sea salt on atmospheric nitrate and ammonium concentrations and on nitrogen deposition in the North and Baltic Sea region is assessed. Sea salt has a low effect on nitrate concentrations but does not improve them. 3 to 7 % of the nitrogen deposition into the North Sea is accounted to the presence of sea salt. In the Baltic Sea, the contribution is negligible.
V. Matthias, A. Aulinger, A. Backes, J. Bieser, B. Geyer, M. Quante, and M. Zeretzke
Atmos. Chem. Phys., 16, 759–776, https://doi.org/10.5194/acp-16-759-2016, https://doi.org/10.5194/acp-16-759-2016, 2016
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Scenarios for future shipping emissions in the North Sea were developed. Compared to today, the contribution of shipping to the nitrogen dioxide and ozone concentrations will increase due to the expected enhanced traffic by more than 20 % and 5 %, respectively, by 2030 if no regulation for further emission reductions is implemented. PM2.5 will decrease slightly because the sulfur content in ship fuels will be reduced.
A. Aulinger, V. Matthias, M. Zeretzke, J. Bieser, M. Quante, and A. Backes
Atmos. Chem. Phys., 16, 739–758, https://doi.org/10.5194/acp-16-739-2016, https://doi.org/10.5194/acp-16-739-2016, 2016
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A multi-model approach consisting of a bottom-up ship emissions model and a chemistry transport model was used to evaluate the impact of shipping on air quality in North Sea bordering countries. As an example, the results of the simulations indicated that the relative contribution of ships to NO2 concentration levels ashore close to the sea can reach up to 25 % in summer and 15 % in winter. Some hundred kilometers away from the sea, the contribution was about 6 % in summer and 4 % in winter.
J. Zhu, T. Wang, J. Bieser, and V. Matthias
Atmos. Chem. Phys., 15, 8767–8779, https://doi.org/10.5194/acp-15-8767-2015, https://doi.org/10.5194/acp-15-8767-2015, 2015
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This study estimated the contributions to mercury concentration and deposition in easter China from seven categories of emission sources by CMAQ-Hg. Also, this study focuses on diagnostic and process analyses for atmospheric mercury pollution formation and on identification of the dominant atmospheric processes for mercury.
F. Ziska, B. Quack, K. Abrahamsson, S. D. Archer, E. Atlas, T. Bell, J. H. Butler, L. J. Carpenter, C. E. Jones, N. R. P. Harris, H. Hepach, K. G. Heumann, C. Hughes, J. Kuss, K. Krüger, P. Liss, R. M. Moore, A. Orlikowska, S. Raimund, C. E. Reeves, W. Reifenhäuser, A. D. Robinson, C. Schall, T. Tanhua, S. Tegtmeier, S. Turner, L. Wang, D. Wallace, J. Williams, H. Yamamoto, S. Yvon-Lewis, and Y. Yokouchi
Atmos. Chem. Phys., 13, 8915–8934, https://doi.org/10.5194/acp-13-8915-2013, https://doi.org/10.5194/acp-13-8915-2013, 2013
Related subject area
Oceanography
GREAT v1.0: Global Real-time Early Assessment of Tsunamis
Using automatic calibration to improve the physics behind complex numerical models: an example from a 3D lake model using Delft3D (v6.02.10) and DYNO-PODS (v1.0)
Improvements to the Met Office's global ocean–sea ice forecasting system including model and data assimilation changes
Resolution dependence of interlinked Southern Ocean biases in global coupled HadGEM3 models
A new global high-resolution wave model for the tropical ocean using WAVEWATCH III version 7.14
sedInterFoam 1.0: a three-phase numerical model for sediment transport applications with free surfaces
The Ross Sea and Amundsen Sea Ice–Sea Model (RAISE v1.0): a high-resolution ocean–sea ice–ice shelf coupling model for simulating the Dense Shelf Water and Antarctic Bottom Water in the Ross Sea, Antarctica
Sensitivity of the tropical Atlantic to vertical mixing in two ocean models (ICON-O v2.6.6 and FESOM v2.5)
HIDRA3: a deep-learning model for multipoint ensemble sea level forecasting in the presence of tide gauge sensor failures
A wave-resolving two-dimensional vertical Lagrangian approach to model microplastic transport in nearshore waters based on TrackMPD 3.0
HOTSSea v1: a NEMO-based physical Hindcast of the Salish Sea (1980–2018) supporting ecosystem model development
Comparing an idealized deterministic-stochastic model (SUP model, version 1) of the tide-and-wind driven sea surface currents in the Gulf of Trieste to HF Radar observations
Impacts of CICE sea ice model and ERA atmosphere on an Antarctic MetROMS ocean model, MetROMS-UHel-v1.0
DalROMS-NWA12 v1.0, a coupled circulation–ice–biogeochemistry modelling system for the northwest Atlantic Ocean: development and validation
A revised ocean mixed layer model for better simulating the diurnal variation in ocean skin temperature
Evaluating an accelerated forcing approach for improving computational efficiency in coupled ice sheet–ocean modelling
An optimal transformation method for inferring ocean tracer sources and sinks
Data-driven rolling model for global wave height
PPCon 1.0: Biogeochemical-Argo profile prediction with 1D convolutional networks
Wave forecast investigations on downscaling, source terms, and tides for Aotearoa New Zealand
An Effective Communication Topology for Performance Optimization: A Case Study of the Finite Volume WAve Modeling (FVWAM)
Experimental design for the Marine Ice Sheet–Ocean Model Intercomparison Project – phase 2 (MISOMIP2)
Development of a total variation diminishing (TVD) sea ice transport scheme and its application in an ocean (SCHISM v5.11) and sea ice (Icepack v1.3.4) coupled model on unstructured grids
Spurious numerical mixing under strong tidal forcing: a case study in the south-east Asian seas using the Symphonie model (v3.1.2)
Modelling the water isotope distribution in the Mediterranean Sea using a high-resolution oceanic model (NEMO-MED12-watiso v1.0): evaluation of model results against in situ observations
LIGHT-bgcArgo-1.0: using synthetic float capabilities in E3SMv2 to assess spatiotemporal variability in ocean physics and biogeochemistry
PIBM 1.0: An individual-based model for simulating phytoplankton acclimation, diversity, and evolution in the ocean
Towards a real-time modeling of global ocean waves by the fully GPU-accelerated spectral wave model WAM6-GPU v1.0
A simple approach to represent precipitation-derived freshwater fluxes into nearshore ocean models: an FVCOM4.1 case study of Quatsino Sound, British Columbia
An optimal transformation method applied to diagnose the ocean carbon budget
Implementation and assessment of a model including mixotrophs and the carbonate cycle (Eco3M_MIX-CarbOx v1.0) in a highly dynamic Mediterranean coastal environment (Bay of Marseille, France) – Part 2: Towards a better representation of total alkalinity when modeling the carbonate system and air–sea CO2 fluxes
Development of a novel storm surge inundation model framework for efficient prediction
Skin sea surface temperature schemes in coupled ocean–atmosphere modelling: the impact of chlorophyll-interactive e-folding depth
DELWAVE 1.0: deep learning surrogate model of surface wave climate in the Adriatic Basin
StraitFlux – precise computations of water strait fluxes on various modeling grids
Comparison of the Coastal and Regional Ocean COmmunity model (CROCO) and NCAR-LES in non-hydrostatic simulations
Intercomparisons of Tracker v1.1 and four other ocean particle-tracking software packages in the Regional Ocean Modeling System
CAR36, a regional high-resolution ocean forecasting system for improving drift and beaching of Sargassum in the Caribbean archipelago
Implementation of additional spectral wave field exchanges in a three-dimensional wave–current coupled WAVEWATCH-III (version 6.07) and CROCO (version 1.2) configuration: assessment of their implications for macro-tidal coastal hydrodynamics
Comparison of 4-dimensional variational and ensemble optimal interpolation data assimilation systems using a Regional Ocean Modeling System (v3.4) configuration of the eddy-dominated East Australian Current system
LOCATE v1.0: numerical modelling of floating marine debris dispersion in coastal regions using Parcels v2.4.2
New insights into the South China Sea throughflow and water budget seasonal cycle: evaluation and analysis of a high-resolution configuration of the ocean model SYMPHONIE version 2.4
MQGeometry-1.0: a multi-layer quasi-geostrophic solver on non-rectangular geometries
Parameter estimation for ocean background vertical diffusivity coefficients in the Community Earth System Model (v1.2.1) and its impact on El Niño–Southern Oscillation forecasts
Great Lakes wave forecast system on high-resolution unstructured meshes
Impact of increased resolution on Arctic Ocean simulations in Ocean Model Intercomparison Project phase 2 (OMIP-2)
A high-resolution physical–biogeochemical model for marine resource applications in the northwest Atlantic (MOM6-COBALT-NWA12 v1.0)
A flexible z-layers approach for the accurate representation of free surface flows in a coastal ocean model (SHYFEM v. 7_5_71)
Implementation and assessment of a model including mixotrophs and the carbonate cycle (Eco3M_MIX-CarbOx v1.0) in a highly dynamic Mediterranean coastal environment (Bay of Marseille, France) – Part 1: Evolution of ecosystem composition under limited light and nutrient conditions
Ocean wave tracing v.1: a numerical solver of the wave ray equations for ocean waves on variable currents at arbitrary depths
Usama Kadri, Ali Abdolali, and Maxim Filimonov
Geosci. Model Dev., 18, 3487–3507, https://doi.org/10.5194/gmd-18-3487-2025, https://doi.org/10.5194/gmd-18-3487-2025, 2025
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The GREAT v1.0 software introduces a novel tsunami warning technology for global real-time analysis. It leverages acoustic signals generated by tsunamis, which propagate faster than the tsunami itself, enabling real-time detection and assessment. Integrating various models, the software provides reliable and rapid assessment, maps risk areas, and estimates tsunami amplitude. This advancement reduces false alarms and enhances global tsunami warning systems' accuracy and efficiency.
Marina Amadori, Abolfazl Irani Rahaghi, Damien Bouffard, and Marco Toffolon
Geosci. Model Dev., 18, 3473–3486, https://doi.org/10.5194/gmd-18-3473-2025, https://doi.org/10.5194/gmd-18-3473-2025, 2025
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Models simplify reality using assumptions, which can sometimes introduce flaws and affect their accuracy. Properly calibrating model parameters is essential, and although automated tools can speed up this process, they may occasionally produce incorrect values due to inconsistencies in the model. We demonstrate that by carefully applying automated tools, we were able to identify and correct a flaw in a widely used model for lake environments.
Davi Mignac, Jennifer Waters, Daniel J. Lea, Matthew J. Martin, James While, Anthony T. Weaver, Arthur Vidard, Catherine Guiavarc'h, Dave Storkey, David Ford, Edward W. Blockley, Jonathan Baker, Keith Haines, Martin R. Price, Michael J. Bell, and Richard Renshaw
Geosci. Model Dev., 18, 3405–3425, https://doi.org/10.5194/gmd-18-3405-2025, https://doi.org/10.5194/gmd-18-3405-2025, 2025
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We describe major improvements of the Met Office's global ocean–sea ice forecasting system. The models and the way observations are used to improve the forecasts were changed, which led to a significant error reduction of 1 d forecasts. The new system performance in past conditions, where subsurface observations are scarce, was improved with more consistent ocean heat content estimates. The new system will be of better use for climate studies and will provide improved forecasts for end users.
David Storkey, Pierre Mathiot, Michael J. Bell, Dan Copsey, Catherine Guiavarc'h, Helene T. Hewitt, Jeff Ridley, and Malcolm J. Roberts
Geosci. Model Dev., 18, 2725–2745, https://doi.org/10.5194/gmd-18-2725-2025, https://doi.org/10.5194/gmd-18-2725-2025, 2025
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The Southern Ocean is a key region of the world ocean in the context of climate change studies. We show that the Met Office Hadley Centre coupled model with intermediate ocean resolution struggles to accurately simulate the Southern Ocean. Increasing the frictional drag that the seafloor exerts on ocean currents and introducing a representation of unresolved ocean eddies both appear to reduce the large-scale biases in this model.
Axelle Gaffet, Xavier Bertin, Damien Sous, Héloïse Michaud, Aron Roland, and Emmanuel Cordier
Geosci. Model Dev., 18, 1929–1946, https://doi.org/10.5194/gmd-18-1929-2025, https://doi.org/10.5194/gmd-18-1929-2025, 2025
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This study presents a new global wave model that improves predictions of sea states in tropical areas by using a high-resolution grid and corrected wind fields. The model is validated globally with satellite data and nearshore using in situ data. The model allows for the first time direct comparisons with in situ data collected at 10–30 m water depth, which is very close to shore due to the steep slope usually surrounding volcanic islands.
Antoine Mathieu, Yeulwoo Kim, Tian-Jian Hsu, Cyrille Bonamy, and Julien Chauchat
Geosci. Model Dev., 18, 1561–1573, https://doi.org/10.5194/gmd-18-1561-2025, https://doi.org/10.5194/gmd-18-1561-2025, 2025
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Most of the tools available to model sediment transport do not account for complex physical mechanisms such as surface-wave-driven processes. In this study, a new model, sedInterFoam, allows us to reproduce numerically complex configurations in order to investigate coastal sediment transport applications dominated by surface waves and to gain insight into the complex physical processes associated with breaking waves and morphodynamics.
Zhaoru Zhang, Chuan Xie, Chuning Wang, Yuanjie Chen, Heng Hu, and Xiaoqiao Wang
Geosci. Model Dev., 18, 1375–1393, https://doi.org/10.5194/gmd-18-1375-2025, https://doi.org/10.5194/gmd-18-1375-2025, 2025
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A coupled fine-resolution ocean–ice model is developed for the Ross Sea and adjacent regions in Antarctica, a key area for the formation of global ocean bottom water, the Antarctic Bottom Water (AABW), which affects global ocean circulation. The model has a high skill level in simulating sea ice production driving the AABW source water formation and AABW properties when assessed against observations. A model experiment shows a significant impact of ice shelf melting on the AABW characteristics.
Swantje Bastin, Aleksei Koldunov, Florian Schütte, Oliver Gutjahr, Marta Agnieszka Mrozowska, Tim Fischer, Radomyra Shevchenko, Arjun Kumar, Nikolay Koldunov, Helmuth Haak, Nils Brüggemann, Rebecca Hummels, Mia Sophie Specht, Johann Jungclaus, Sergey Danilov, Marcus Dengler, and Markus Jochum
Geosci. Model Dev., 18, 1189–1220, https://doi.org/10.5194/gmd-18-1189-2025, https://doi.org/10.5194/gmd-18-1189-2025, 2025
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Vertical mixing is an important process, for example, for tropical sea surface temperature, but cannot be resolved by ocean models. Comparisons of mixing schemes and settings have usually been done with a single model, sometimes yielding conflicting results. We systematically compare two widely used schemes with different parameter settings in two different ocean models and show that most effects from mixing scheme parameter changes are model-dependent.
Marko Rus, Hrvoje Mihanović, Matjaž Ličer, and Matej Kristan
Geosci. Model Dev., 18, 605–620, https://doi.org/10.5194/gmd-18-605-2025, https://doi.org/10.5194/gmd-18-605-2025, 2025
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HIDRA3 is a deep-learning model for predicting sea levels and storm surges, offering significant improvements over previous models and numerical simulations. It utilizes data from multiple tide gauges, enhancing predictions even with limited historical data and during sensor outages. With its advanced architecture, HIDRA3 outperforms current state-of-the-art models by achieving a mean absolute error of up to 15 % lower, proving effective for coastal flood forecasting under diverse conditions.
Isabel Jalón-Rojas, Damien Sous, and Vincent Marieu
Geosci. Model Dev., 18, 319–336, https://doi.org/10.5194/gmd-18-319-2025, https://doi.org/10.5194/gmd-18-319-2025, 2025
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This study presents a novel modeling approach for understanding microplastic transport in coastal waters. The model accurately replicates experimental data and reveals key transport mechanisms. The findings enhance our knowledge of how microplastics move in nearshore environments, aiding in coastal management and efforts to combat plastic pollution globally.
Greig Oldford, Tereza Jarníková, Villy Christensen, and Michael Dunphy
Geosci. Model Dev., 18, 211–237, https://doi.org/10.5194/gmd-18-211-2025, https://doi.org/10.5194/gmd-18-211-2025, 2025
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We developed a 3D ocean model called the Hindcast of the Salish Sea (HOTSSea v1) that recreates physical conditions throughout the Salish Sea from 1980 to 2018. It was not clear that acceptable accuracy could be achieved because of computational and data limitations, but the model's predictions agreed well with observations. When we used the model to examine ocean temperature trends in areas that lack observations, it indicated that some seasons and areas are warming faster than others.
Sofia Flora, Laura Ursella, and Achim Wirth
EGUsphere, https://doi.org/10.5194/egusphere-2024-3391, https://doi.org/10.5194/egusphere-2024-3391, 2025
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We developed a hierarchy of idealized deterministic-stochastic models to simulate the sea surface currents in the Gulf of Trieste. They include tide-and-wind driven sea surface current components, resolving the slowly varying part of the flow and a stochastic signal, representing the fast-varying small-scale dynamics. The comparison with High Frequency Radar observations shows that the non-Gaussian stochastic model captures the essential dynamics and permits to mimic the observed fat-tailed PDF.
Cecilia Äijälä, Yafei Nie, Lucía Gutiérrez-Loza, Chiara De Falco, Siv Kari Lauvset, Bin Cheng, David A. Bailey, and Petteri Uotila
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-213, https://doi.org/10.5194/gmd-2024-213, 2024
Revised manuscript accepted for GMD
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The sea ice around Antarctica has experienced record lows in recent years. To understand these changes, models are needed. MetROMS-UHel is a new version of an ocean–sea ice model with updated sea ice code and the atmospheric data. We investigate the effect of our updates on different variables with a focus on sea ice and show an improved sea ice representation as compared with observations.
Kyoko Ohashi, Arnaud Laurent, Christoph Renkl, Jinyu Sheng, Katja Fennel, and Eric Oliver
Geosci. Model Dev., 17, 8697–8733, https://doi.org/10.5194/gmd-17-8697-2024, https://doi.org/10.5194/gmd-17-8697-2024, 2024
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We developed a modelling system of the northwest Atlantic Ocean that simulates the currents, temperature, salinity, and parts of the biochemical cycle of the ocean, as well as sea ice. The system combines advanced, open-source models and can be used to study, for example, the ocean capture of atmospheric carbon dioxide, which is a key process in the global climate. The system produces realistic results, and we use it to investigate the roles of tides and sea ice in the northwest Atlantic Ocean.
Eui-Jong Kang, Byung-Ju Sohn, Sang-Woo Kim, Wonho Kim, Young-Cheol Kwon, Seung-Bum Kim, Hyoung-Wook Chun, and Chao Liu
Geosci. Model Dev., 17, 8553–8568, https://doi.org/10.5194/gmd-17-8553-2024, https://doi.org/10.5194/gmd-17-8553-2024, 2024
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Sea surface temperature (SST) is vital in climate, weather, and ocean sciences because it influences air–sea interactions. Errors in the ECMWF model's scheme for predicting ocean skin temperature prompted a revision of the ocean mixed layer model. Validation against infrared measurements and buoys showed a good correlation with minimal deviations. The revised model accurately simulates SST variations and aligns with solar radiation distributions, showing promise for weather and climate models.
Qin Zhou, Chen Zhao, Rupert Gladstone, Tore Hattermann, David Gwyther, and Benjamin Galton-Fenzi
Geosci. Model Dev., 17, 8243–8265, https://doi.org/10.5194/gmd-17-8243-2024, https://doi.org/10.5194/gmd-17-8243-2024, 2024
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We introduce an accelerated forcing approach to address timescale discrepancies between the ice sheets and ocean components in coupled modelling by reducing the ocean simulation duration. The approach is evaluated using idealized coupled models, and its limitations in real-world applications are discussed. Our results suggest it can be a valuable tool for process-oriented coupled ice sheet–ocean modelling and downscaling climate simulations with such models.
Jan D. Zika and Taimoor Sohail
Geosci. Model Dev., 17, 8049–8068, https://doi.org/10.5194/gmd-17-8049-2024, https://doi.org/10.5194/gmd-17-8049-2024, 2024
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We describe a method to relate fluxes of heat and freshwater at the sea surface to the resulting distribution of seawater among categories such as warm and salty or cold and salty. The method exploits the laws that govern how heat and salt change when water mixes. The method will allow the climate community to improve estimates of how much heat the ocean is absorbing and how rainfall and evaporation are changing across the globe.
Xinxin Wang, Jiuke Wang, Wenfang Lu, Changming Dong, Hao Qin, and Haoyu Jiang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-181, https://doi.org/10.5194/gmd-2024-181, 2024
Revised manuscript accepted for GMD
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Large-scale wave modeling is essential for science and society, typically relying on resource-intensive numerical methods to simulate wave dynamics. In this study, we introduce a rolling AI-based method for modeling global significant wave height. Our model achieves accuracy comparable to traditional numerical methods while significantly improving speed, making it operable on standard laptops. This work demonstrates AI's potential to enhance the accuracy and efficiency of global wave modeling.
Gloria Pietropolli, Luca Manzoni, and Gianpiero Cossarini
Geosci. Model Dev., 17, 7347–7364, https://doi.org/10.5194/gmd-17-7347-2024, https://doi.org/10.5194/gmd-17-7347-2024, 2024
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Monitoring the ocean is essential for studying marine life and human impact. Our new software, PPCon, uses ocean data to predict key factors like nitrate and chlorophyll levels, which are hard to measure directly. By leveraging machine learning, PPCon offers more accurate and efficient predictions.
Rafael Santana, Richard Gorman, Emily Lane, Stuart Moore, Cyprien Bosserelle, Glen Reeve, and Christo Rautenbach
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-110, https://doi.org/10.5194/gmd-2024-110, 2024
Revised manuscript accepted for GMD
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This research explores improving wave forecasts in New Zealand, particularly at Banks Peninsula and Baring Head. We used detailed models, finding that forecasts at Baring Head improved significantly due to its strong tidal currents, but changes at Banks Peninsula were minimal. The study demonstrates that local conditions greatly influence the effectiveness of wave prediction models, highlighting the need for tailored approaches in coastal forecasting to enhance accuracy in the predictions.
Renbo Pang, Fujiang Yu, Yuanyong Gao, Ye Yuan, Liang Yuan, and Zhiyi Gao
EGUsphere, https://doi.org/10.5194/egusphere-2024-2515, https://doi.org/10.5194/egusphere-2024-2515, 2024
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The application of the distributed graph communication topology in earth models has been rarely studied. We tested and compared this topology with the traditional point-to-point communication method using a global wave model. We found that this topology is more efficient. Additionally, using this topology can greatly improve the performance of the wave model and could help improve the performance of other earth models.
Jan De Rydt, Nicolas C. Jourdain, Yoshihiro Nakayama, Mathias van Caspel, Ralph Timmermann, Pierre Mathiot, Xylar S. Asay-Davis, Hélène Seroussi, Pierre Dutrieux, Ben Galton-Fenzi, David Holland, and Ronja Reese
Geosci. Model Dev., 17, 7105–7139, https://doi.org/10.5194/gmd-17-7105-2024, https://doi.org/10.5194/gmd-17-7105-2024, 2024
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Global climate models do not reliably simulate sea-level change due to ice-sheet–ocean interactions. We propose a community modelling effort to conduct a series of well-defined experiments to compare models with observations and study how models respond to a range of perturbations in climate and ice-sheet geometry. The second Marine Ice Sheet–Ocean Model Intercomparison Project will continue to lay the groundwork for including ice-sheet–ocean interactions in global-scale IPCC-class models.
Qian Wang, Yang Zhang, Fei Chai, Y. Joseph Zhang, and Lorenzo Zampieri
Geosci. Model Dev., 17, 7067–7081, https://doi.org/10.5194/gmd-17-7067-2024, https://doi.org/10.5194/gmd-17-7067-2024, 2024
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We coupled an unstructured hydro-model with an advanced column sea ice model to meet the growing demand for increased resolution and complexity in unstructured sea ice models. Additionally, we present a novel tracer transport scheme for the sea ice coupled model and demonstrate that this scheme fulfills the requirements for conservation, accuracy, efficiency, and monotonicity in an idealized test. Our new coupled model also has good performance in realistic tests.
Adrien Garinet, Marine Herrmann, Patrick Marsaleix, and Juliette Pénicaud
Geosci. Model Dev., 17, 6967–6986, https://doi.org/10.5194/gmd-17-6967-2024, https://doi.org/10.5194/gmd-17-6967-2024, 2024
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Mixing is a crucial aspect of the ocean, but its accurate representation in computer simulations is made challenging by errors that result in unwanted mixing, compromising simulation realism. Here we illustrate the spurious effect that tides can have on simulations of south-east Asia. Although they play an important role in determining the state of the ocean, they can increase numerical errors and make simulation outputs less realistic. We also provide insights into how to reduce these errors.
Mohamed Ayache, Jean-Claude Dutay, Anne Mouchet, Kazuyo Tachikawa, Camille Risi, and Gilles Ramstein
Geosci. Model Dev., 17, 6627–6655, https://doi.org/10.5194/gmd-17-6627-2024, https://doi.org/10.5194/gmd-17-6627-2024, 2024
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Water isotopes (δ18O, δD) are one of the most widely used proxies in ocean climate research. Previous studies using water isotope observations and modelling have highlighted the importance of understanding spatial and temporal isotopic variability for a quantitative interpretation of these tracers. Here we present the first results of a high-resolution regional dynamical model (at 1/12° horizontal resolution) developed for the Mediterranean Sea, one of the hotspots of ongoing climate change.
Cara Nissen, Nicole S. Lovenduski, Mathew Maltrud, Alison R. Gray, Yohei Takano, Kristen Falcinelli, Jade Sauvé, and Katherine Smith
Geosci. Model Dev., 17, 6415–6435, https://doi.org/10.5194/gmd-17-6415-2024, https://doi.org/10.5194/gmd-17-6415-2024, 2024
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Autonomous profiling floats have provided unprecedented observational coverage of the global ocean, but uncertainties remain about whether their sampling frequency and density capture the true spatiotemporal variability of physical, biogeochemical, and biological properties. Here, we present the novel synthetic biogeochemical float capabilities of the Energy Exascale Earth System Model version 2 and demonstrate their utility as a test bed to address these uncertainties.
Iria Sala and Bingzhang Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-130, https://doi.org/10.5194/gmd-2024-130, 2024
Revised manuscript accepted for GMD
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Phytoplankton, tiny photosynthetic organisms, produce nearly half of Earth's oxygen. To analyze their physiology, diversity, and evolution in the ocean, we developed a model that treats phytoplankton as individual particles. Moreover, our model considers phytoplankton size, temperature, and light traits, and allows for mutations in phytoplankton cells. Thus, our model provides a valuable tool for advancing the study of phytoplankton physiology, diversity, and evolution.
Ye Yuan, Fujiang Yu, Zhi Chen, Xueding Li, Fang Hou, Yuanyong Gao, Zhiyi Gao, and Renbo Pang
Geosci. Model Dev., 17, 6123–6136, https://doi.org/10.5194/gmd-17-6123-2024, https://doi.org/10.5194/gmd-17-6123-2024, 2024
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Accurate and timely forecasting of ocean waves is of great importance to the safety of marine transportation and offshore engineering. In this study, GPU-accelerated computing is introduced in WAve Modeling Cycle 6 (WAM6). With this effort, global high-resolution wave simulations can now run on GPUs up to tens of times faster than the currently available models can on a CPU node with results that are just as accurate.
Krysten Rutherford, Laura Bianucci, and William Floyd
Geosci. Model Dev., 17, 6083–6104, https://doi.org/10.5194/gmd-17-6083-2024, https://doi.org/10.5194/gmd-17-6083-2024, 2024
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Nearshore ocean models often lack complete information about freshwater fluxes due to numerous ungauged rivers and streams. We tested a simple rain-based hydrological model as inputs into an ocean model of Quatsino Sound, Canada, with the aim of improving the representation of the land–ocean connection in the nearshore model. Through multiple tests, we found that the performance of the ocean model improved when providing 60 % or more of the freshwater inputs from the simple runoff model.
Neill Mackay, Taimoor Sohail, Jan David Zika, Richard G. Williams, Oliver Andrews, and Andrew James Watson
Geosci. Model Dev., 17, 5987–6005, https://doi.org/10.5194/gmd-17-5987-2024, https://doi.org/10.5194/gmd-17-5987-2024, 2024
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The ocean absorbs carbon dioxide from the atmosphere, mitigating climate change, but estimates of the uptake do not always agree. There is a need to reconcile these differing estimates and to improve our understanding of ocean carbon uptake. We present a new method for estimating ocean carbon uptake and test it with model data. The method effectively diagnoses the ocean carbon uptake from limited data and therefore shows promise for reconciling different observational estimates.
Lucille Barré, Frédéric Diaz, Thibaut Wagener, Camille Mazoyer, Christophe Yohia, and Christel Pinazo
Geosci. Model Dev., 17, 5851–5882, https://doi.org/10.5194/gmd-17-5851-2024, https://doi.org/10.5194/gmd-17-5851-2024, 2024
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The carbonate system is typically studied using measurements, but modeling can contribute valuable insights. Using a biogeochemical model, we propose a new representation of total alkalinity, dissolved inorganic carbon, pCO2, and pH in a highly dynamic Mediterranean coastal area, the Bay of Marseille, a useful addition to measurements. Through a detailed analysis of pCO2 and air–sea CO2 fluxes, we show that variations are strongly impacted by the hydrodynamic processes that affect the bay.
Xuanxuan Gao, Shuiqing Li, Dongxue Mo, Yahao Liu, and Po Hu
Geosci. Model Dev., 17, 5497–5509, https://doi.org/10.5194/gmd-17-5497-2024, https://doi.org/10.5194/gmd-17-5497-2024, 2024
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Storm surges generate coastal inundation and expose populations and properties to danger. We developed a novel storm surge inundation model for efficient prediction. Estimates compare well with in situ measurements and results from a numerical model. The new model is a significant improvement on existing numerical models, with much higher computational efficiency and stability, which allows timely disaster prevention and mitigation.
Vincenzo de Toma, Daniele Ciani, Yassmin Hesham Essa, Chunxue Yang, Vincenzo Artale, Andrea Pisano, Davide Cavaliere, Rosalia Santoleri, and Andrea Storto
Geosci. Model Dev., 17, 5145–5165, https://doi.org/10.5194/gmd-17-5145-2024, https://doi.org/10.5194/gmd-17-5145-2024, 2024
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This study explores methods to reconstruct diurnal variations in skin sea surface temperature in a model of the Mediterranean Sea. Our new approach, considering chlorophyll concentration, enhances spatial and temporal variations in the warm layer. Comparative analysis shows context-dependent improvements. The proposed "chlorophyll-interactive" method brings the surface net total heat flux closer to zero annually, despite a net heat loss from the ocean to the atmosphere.
Peter Mlakar, Antonio Ricchi, Sandro Carniel, Davide Bonaldo, and Matjaž Ličer
Geosci. Model Dev., 17, 4705–4725, https://doi.org/10.5194/gmd-17-4705-2024, https://doi.org/10.5194/gmd-17-4705-2024, 2024
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We propose a new point-prediction model, the DEep Learning WAVe Emulating model (DELWAVE), which successfully emulates the Simulating WAves Nearshore model (SWAN) over synoptic to climate timescales. Compared to control climatology over all wind directions, the mismatch between DELWAVE and SWAN is generally small compared to the difference between scenario and control conditions, suggesting that the noise introduced by surrogate modelling is substantially weaker than the climate change signal.
Susanna Winkelbauer, Michael Mayer, and Leopold Haimberger
Geosci. Model Dev., 17, 4603–4620, https://doi.org/10.5194/gmd-17-4603-2024, https://doi.org/10.5194/gmd-17-4603-2024, 2024
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Oceanic transports shape the global climate, but the evaluation and validation of this key quantity based on reanalysis and model data are complicated by the distortion of the used modelling grids and the large number of different grid types. We present two new methods that allow the calculation of oceanic fluxes of volume, heat, salinity, and ice through almost arbitrary sections for various models and reanalyses that are independent of the used modelling grids.
Xiaoyu Fan, Baylor Fox-Kemper, Nobuhiro Suzuki, Qing Li, Patrick Marchesiello, Peter P. Sullivan, and Paul S. Hall
Geosci. Model Dev., 17, 4095–4113, https://doi.org/10.5194/gmd-17-4095-2024, https://doi.org/10.5194/gmd-17-4095-2024, 2024
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Simulations of the oceanic turbulent boundary layer using the nonhydrostatic CROCO ROMS and NCAR-LES models are compared. CROCO and the NCAR-LES are accurate in a similar manner, but CROCO’s additional features (e.g., nesting and realism) and its compressible turbulence formulation carry additional costs.
Jilian Xiong and Parker MacCready
Geosci. Model Dev., 17, 3341–3356, https://doi.org/10.5194/gmd-17-3341-2024, https://doi.org/10.5194/gmd-17-3341-2024, 2024
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The new offline particle tracking package, Tracker v1.1, is introduced to the Regional Ocean Modeling System, featuring an efficient nearest-neighbor algorithm to enhance particle-tracking speed. Its performance was evaluated against four other tracking packages and passive dye. Despite unique features, all packages yield comparable results. Running multiple packages within the same circulation model allows comparison of their performance and ease of use.
Sylvain Cailleau, Laurent Bessières, Léonel Chiendje, Flavie Dubost, Guillaume Reffray, Jean-Michel Lellouche, Simon van Gennip, Charly Régnier, Marie Drevillon, Marc Tressol, Matthieu Clavier, Julien Temple-Boyer, and Léo Berline
Geosci. Model Dev., 17, 3157–3173, https://doi.org/10.5194/gmd-17-3157-2024, https://doi.org/10.5194/gmd-17-3157-2024, 2024
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In order to improve Sargassum drift forecasting in the Caribbean area, drift models can be forced by higher-resolution ocean currents. To this goal a 3 km resolution regional ocean model has been developed. Its assessment is presented with a particular focus on the reproduction of fine structures representing key features of the Caribbean region dynamics and Sargassum transport. The simulated propagation of a North Brazil Current eddy and its dissipation was found to be quite realistic.
Gaetano Porcile, Anne-Claire Bennis, Martial Boutet, Sophie Le Bot, Franck Dumas, and Swen Jullien
Geosci. Model Dev., 17, 2829–2853, https://doi.org/10.5194/gmd-17-2829-2024, https://doi.org/10.5194/gmd-17-2829-2024, 2024
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Here a new method of modelling the interaction between ocean currents and waves is presented. We developed an advanced coupling of two models, one for ocean currents and one for waves. In previous couplings, some wave-related calculations were based on simplified assumptions. Our method uses more complex calculations to better represent wave–current interactions. We tested it in a macro-tidal coastal area and found that it significantly improves the model accuracy, especially during storms.
Colette Gabrielle Kerry, Moninya Roughan, Shane Keating, David Gwyther, Gary Brassington, Adil Siripatana, and Joao Marcos A. C. Souza
Geosci. Model Dev., 17, 2359–2386, https://doi.org/10.5194/gmd-17-2359-2024, https://doi.org/10.5194/gmd-17-2359-2024, 2024
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Ocean forecasting relies on the combination of numerical models and ocean observations through data assimilation (DA). Here we assess the performance of two DA systems in a dynamic western boundary current, the East Australian Current, across a common modelling and observational framework. We show that the more advanced, time-dependent method outperforms the time-independent method for forecast horizons of 5 d. This advocates the use of advanced methods for highly variable oceanic regions.
Ivan Hernandez, Leidy M. Castro-Rosero, Manuel Espino, and Jose M. Alsina Torrent
Geosci. Model Dev., 17, 2221–2245, https://doi.org/10.5194/gmd-17-2221-2024, https://doi.org/10.5194/gmd-17-2221-2024, 2024
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The LOCATE numerical model was developed to conduct Lagrangian simulations of the transport and dispersion of marine debris at coastal scales. High-resolution hydrodynamic data and a beaching module that used particle distance to the shore for land–water boundary detection were used on a realistic debris discharge scenario comparing hydrodynamic data at various resolutions. Coastal processes and complex geometric structures were resolved when using nested grids and distance-to-shore beaching.
Ngoc B. Trinh, Marine Herrmann, Caroline Ulses, Patrick Marsaleix, Thomas Duhaut, Thai To Duy, Claude Estournel, and R. Kipp Shearman
Geosci. Model Dev., 17, 1831–1867, https://doi.org/10.5194/gmd-17-1831-2024, https://doi.org/10.5194/gmd-17-1831-2024, 2024
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A high-resolution model was built to study the South China Sea (SCS) water, heat, and salt budgets. Model performance is demonstrated by comparison with observations and simulations. Important discards are observed if calculating offline, instead of online, lateral inflows and outflows of water, heat, and salt. The SCS mainly receives water from the Luzon Strait and releases it through the Mindoro, Taiwan, and Karimata straits. SCS surface interocean water exchanges are driven by monsoon winds.
Louis Thiry, Long Li, Guillaume Roullet, and Etienne Mémin
Geosci. Model Dev., 17, 1749–1764, https://doi.org/10.5194/gmd-17-1749-2024, https://doi.org/10.5194/gmd-17-1749-2024, 2024
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We present a new way of solving the quasi-geostrophic (QG) equations, a simple set of equations describing ocean dynamics. Our method is solely based on the numerical methods used to solve the equations and requires no parameter tuning. Moreover, it can handle non-rectangular geometries, opening the way to study QG equations on realistic domains. We release a PyTorch implementation to ease future machine-learning developments on top of the presented method.
Zheqi Shen, Yihao Chen, Xiaojing Li, and Xunshu Song
Geosci. Model Dev., 17, 1651–1665, https://doi.org/10.5194/gmd-17-1651-2024, https://doi.org/10.5194/gmd-17-1651-2024, 2024
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Parameter estimation is the process that optimizes model parameters using observations, which could reduce model errors and improve forecasting. In this study, we conducted parameter estimation experiments using the CESM and the ensemble adjustment Kalman filter. The obtained initial conditions and parameters are used to perform ensemble forecast experiments for ENSO forecasting. The results revealed that parameter estimation could reduce analysis errors and improve ENSO forecast skills.
Ali Abdolali, Saeideh Banihashemi, Jose Henrique Alves, Aron Roland, Tyler J. Hesser, Mary Anderson Bryant, and Jane McKee Smith
Geosci. Model Dev., 17, 1023–1039, https://doi.org/10.5194/gmd-17-1023-2024, https://doi.org/10.5194/gmd-17-1023-2024, 2024
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This article presents an overview of the development and implementation of Great Lake Wave Unstructured (GLWUv2.0), including the core model and workflow design and development. The validation was conducted against in situ data for the re-forecasted duration for summer and wintertime (ice season). The article describes the limitations and challenges encountered in the operational environment and the path forward for the next generation of wave forecast systems in enclosed basins like the GL.
Qiang Wang, Qi Shu, Alexandra Bozec, Eric P. Chassignet, Pier Giuseppe Fogli, Baylor Fox-Kemper, Andy McC. Hogg, Doroteaciro Iovino, Andrew E. Kiss, Nikolay Koldunov, Julien Le Sommer, Yiwen Li, Pengfei Lin, Hailong Liu, Igor Polyakov, Patrick Scholz, Dmitry Sidorenko, Shizhu Wang, and Xiaobiao Xu
Geosci. Model Dev., 17, 347–379, https://doi.org/10.5194/gmd-17-347-2024, https://doi.org/10.5194/gmd-17-347-2024, 2024
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Increasing resolution improves model skills in simulating the Arctic Ocean, but other factors such as parameterizations and numerics are at least of the same importance for obtaining reliable simulations.
Andrew C. Ross, Charles A. Stock, Alistair Adcroft, Enrique Curchitser, Robert Hallberg, Matthew J. Harrison, Katherine Hedstrom, Niki Zadeh, Michael Alexander, Wenhao Chen, Elizabeth J. Drenkard, Hubert du Pontavice, Raphael Dussin, Fabian Gomez, Jasmin G. John, Dujuan Kang, Diane Lavoie, Laure Resplandy, Alizée Roobaert, Vincent Saba, Sang-Ik Shin, Samantha Siedlecki, and James Simkins
Geosci. Model Dev., 16, 6943–6985, https://doi.org/10.5194/gmd-16-6943-2023, https://doi.org/10.5194/gmd-16-6943-2023, 2023
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We evaluate a model for northwest Atlantic Ocean dynamics and biogeochemistry that balances high resolution with computational economy by building on the new regional features in the MOM6 ocean model and COBALT biogeochemical model. We test the model's ability to simulate impactful historical variability and find that the model simulates the mean state and variability of most features well, which suggests the model can provide information to inform living-marine-resource applications.
Luca Arpaia, Christian Ferrarin, Marco Bajo, and Georg Umgiesser
Geosci. Model Dev., 16, 6899–6919, https://doi.org/10.5194/gmd-16-6899-2023, https://doi.org/10.5194/gmd-16-6899-2023, 2023
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We propose a discrete multilayer shallow water model based on z-layers which, thanks to the insertion and removal of surface layers, can deal with an arbitrarily large tidal oscillation independently of the vertical resolution. The algorithm is based on a two-step procedure used in numerical simulations with moving boundaries (grid movement followed by a grid topology change, that is, the insertion/removal of surface layers), which avoids the appearance of very thin surface layers.
Lucille Barré, Frédéric Diaz, Thibaut Wagener, France Van Wambeke, Camille Mazoyer, Christophe Yohia, and Christel Pinazo
Geosci. Model Dev., 16, 6701–6739, https://doi.org/10.5194/gmd-16-6701-2023, https://doi.org/10.5194/gmd-16-6701-2023, 2023
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While several studies have shown that mixotrophs play a crucial role in the carbon cycle, the impact of environmental forcings on their dynamics remains poorly investigated. Using a biogeochemical model that considers mixotrophs, we study the impact of light and nutrient concentration on the ecosystem composition in a highly dynamic Mediterranean coastal area: the Bay of Marseille. We show that mixotrophs cope better with oligotrophic conditions compared to strict auto- and heterotrophs.
Trygve Halsne, Kai Håkon Christensen, Gaute Hope, and Øyvind Breivik
Geosci. Model Dev., 16, 6515–6530, https://doi.org/10.5194/gmd-16-6515-2023, https://doi.org/10.5194/gmd-16-6515-2023, 2023
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Surface waves that propagate in oceanic or coastal environments get influenced by their surroundings. Changes in the ambient current or the depth profile affect the wave propagation path, and the change in wave direction is called refraction. Some analytical solutions to the governing equations exist under ideal conditions, but for realistic situations, the equations must be solved numerically. Here we present such a numerical solver under an open-source license.
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Short summary
MERCY is a 3D model to study mercury (Hg) cycling in the ocean. Hg is a highly harmful pollutant regulated by the UN Minamata Convention on Mercury due to widespread human emissions. These emissions eventually reach the oceans, where Hg transforms into the even more toxic and bioaccumulative pollutant methylmercury. MERCY predicts the fate of Hg in the ocean and its buildup in the food chain. It is the first model to consider Hg accumulation in fish, a major source of Hg exposure for humans.
MERCY is a 3D model to study mercury (Hg) cycling in the ocean. Hg is a highly harmful pollutant...
