Articles | Volume 15, issue 15
https://doi.org/10.5194/gmd-15-6025-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-15-6025-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
| 
02 Aug 2022
Development and technical paper |
| 02 Aug 2022
| 02 Aug 2022
Parallel implementation of the SHYFEM (System of HydrodYnamic Finite Element Modules) model
Giorgio Micaletto
Euro-Mediterranean Centre on Climate Change Foundation, via Augusto Imperatore 16, 73100 Lecce, Italy
Ivano Barletta
Euro-Mediterranean Centre on Climate Change Foundation, via Augusto Imperatore 16, 73100 Lecce, Italy
Department of Physics and Astronomy, University of Bologna, 40126 Bologna, Italy
Silvia Mocavero
Euro-Mediterranean Centre on Climate Change Foundation, via Augusto Imperatore 16, 73100 Lecce, Italy
Ivan Federico
Euro-Mediterranean Centre on Climate Change Foundation, via Augusto Imperatore 16, 73100 Lecce, Italy
Italo Epicoco
CORRESPONDING AUTHOR
Euro-Mediterranean Centre on Climate Change Foundation, via Augusto Imperatore 16, 73100 Lecce, Italy
Department of Engineering for Innovation, University of Salento, via per Monteroni, 73100 Lecce, Italy
Giorgia Verri
Euro-Mediterranean Centre on Climate Change Foundation, via Augusto Imperatore 16, 73100 Lecce, Italy
Giovanni Coppini
Euro-Mediterranean Centre on Climate Change Foundation, via Augusto Imperatore 16, 73100 Lecce, Italy
Pasquale Schiano
Euro-Mediterranean Centre on Climate Change Foundation, via Augusto Imperatore 16, 73100 Lecce, Italy
Giovanni Aloisio
Euro-Mediterranean Centre on Climate Change Foundation, via Augusto Imperatore 16, 73100 Lecce, Italy
Department of Engineering for Innovation, University of Salento, via per Monteroni, 73100 Lecce, Italy
Nadia Pinardi
Department of Physics and Astronomy, University of Bologna, 40126 Bologna, Italy
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Rodrigo Campos-Caba, Lorenzo Mentaschi, Jacopo Alessandri, Paula Camus, Andrea Mazzino, Franceso Ferrari, Ivan Federico, Michalis Vousdoukas, and Massimo Tondello
EGUsphere, https://doi.org/10.5194/egusphere-2024-1415, https://doi.org/10.5194/egusphere-2024-1415, 2024
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Development of high-resolution simulations of storm surge in the Northern Adriatic Sea, employing different atmospheric forcing data and physical configurations. Traditional metrics like Pearson correlation and RMSE favor a simulation forced by a coarser database and employing a less sophisticated setup (2D, barotropic). Closer examination allows to identify a baroclinic (3D) model forced by a high-resolution dataset as better able to capture the variability and peak values of the storm surge.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Roberta Benincasa, Giovanni Liguori, Nadia Pinardi, and Hans von Storch
EGUsphere, https://doi.org/10.5194/egusphere-2023-3076, https://doi.org/10.5194/egusphere-2023-3076, 2024
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Ocean dynamics result from the interplay of internal processes and external inputs, primarily from the atmosphere. It is crucial to discern between these factors to gauge the ocean's intrinsic predictability and to be able to attribute a signal under study to either external factors or internal variability. Employing a simple analysis, we successfully characterized this variability in the Mediterranean Sea and compared it with the oceanic response induced by atmospheric conditions.
José A. Jiménez, Antonio Bonaduce, Michael Depuydt, Giulia Galluccio, Bart van den Hirk, H. E. Markus Meier, Nadia Pinardi, Lavinia G. Pomarico, Natalia Vazquez Riveiros, and Gundula Winter
State Planet Discuss., https://doi.org/10.5194/sp-2023-34, https://doi.org/10.5194/sp-2023-34, 2023
Revised manuscript under review for SP
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The European Knowledge Hub on Sea Level Rise (SLR) has done a scoping study involving stakeholders from government and academia to identify gaps and needs in SLR information, impacts, and policies across Europe. Gaps in regional SLR projections and uncertainties were found, while concerns were raised about shoreline erosion, emerging problems like saltwater intrusion and ineffective adaptation plans. The need for improved communication to make better decisions on SLR adaptation was highlighted.
Giovanni Coppini, Emanuela Clementi, Gianpiero Cossarini, Stefano Salon, Gerasimos Korres, Michalis Ravdas, Rita Lecci, Jenny Pistoia, Anna Chiara Goglio, Massimiliano Drudi, Alessandro Grandi, Ali Aydogdu, Romain Escudier, Andrea Cipollone, Vladyslav Lyubartsev, Antonio Mariani, Sergio Cretì, Francesco Palermo, Matteo Scuro, Simona Masina, Nadia Pinardi, Antonio Navarra, Damiano Delrosso, Anna Teruzzi, Valeria Di Biagio, Giorgio Bolzon, Laura Feudale, Gianluca Coidessa, Carolina Amadio, Alberto Brosich, Arnau Miró, Eva Alvarez, Paolo Lazzari, Cosimo Solidoro, Charikleia Oikonomou, and Anna Zacharioudaki
Ocean Sci., 19, 1483–1516, https://doi.org/10.5194/os-19-1483-2023, https://doi.org/10.5194/os-19-1483-2023, 2023
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The paper presents the Mediterranean Forecasting System evolution and performance developed in the framework of the Copernicus Marine Service.
Bethany McDonagh, Emanuela Clementi, Anna Chiara Goglio, and Nadia Pinardi
EGUsphere, https://doi.org/10.5194/egusphere-2023-2251, https://doi.org/10.5194/egusphere-2023-2251, 2023
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Tides in the Mediterranean Sea are typically of low amplitude, but twin experiments using numerical models with and without tides demonstrates that tides affect the circulation on temporal and spatial scales away from those of the tides directly. Tides enhance existing oscillations, and increase the upper layer salinity. Tides are also found to increase the mixed layer depth and enhance dense water formation in key regions. Internal tides are found to be widespread in the Mediterranean Sea.
Umesh Pranavam Ayyappan Pillai, Nadia Pinardi, Ivan Federico, Salvatore Causio, Francesco Trotta, Silvia Unguendoli, and Andrea Valentini
Nat. Hazards Earth Syst. Sci., 22, 3413–3433, https://doi.org/10.5194/nhess-22-3413-2022, https://doi.org/10.5194/nhess-22-3413-2022, 2022
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The study presents the application of high-resolution coastal modelling for wave hindcasting on the Emilia-Romagna coastal belt. The generated coastal databases which provide an understanding of the prevailing wind-wave characteristics can aid in predicting coastal impacts.
Giuseppe Giugliano, Veronica Villani, Giuliana Barbato, Pasquale Schiano, Antonio D'Ambrosio, Piero Cau, Giuseppe Onorati, and Paola Mercogliano
EGUsphere, https://doi.org/10.5194/egusphere-2022-287, https://doi.org/10.5194/egusphere-2022-287, 2022
Preprint archived
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The present paper reports a detailed analysis of the observed and expected climate conditions over the Campania Region. Campania, as part of the Mediterranean area, is already testing relevant impacts related to climate change.
Katherine M. Smith, Skyler Kern, Peter E. Hamlington, Marco Zavatarelli, Nadia Pinardi, Emily F. Klee, and Kyle E. Niemeyer
Geosci. Model Dev., 14, 2419–2442, https://doi.org/10.5194/gmd-14-2419-2021, https://doi.org/10.5194/gmd-14-2419-2021, 2021
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We present a newly developed reduced-order biogeochemical flux model that is complex and flexible enough to capture open-ocean ecosystem dynamics but reduced enough to incorporate into highly resolved numerical simulations with limited additional computational cost. The model provides improved correlations between model output and field data, indicating that significant improvements in the reproduction of real-world data can be achieved with a small number of variables.
Ali Aydoğdu, Nadia Pinardi, Emin Özsoy, Gokhan Danabasoglu, Özgür Gürses, and Alicia Karspeck
Ocean Sci., 14, 999–1019, https://doi.org/10.5194/os-14-999-2018, https://doi.org/10.5194/os-14-999-2018, 2018
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A 6-year simulation of the Turkish Straits System is presented. The simulation is performed by a model using unstructured triangular mesh and realistic atmospheric forcing. The dynamics and circulation of the Marmara Sea are analysed and the mean state of the system is discussed on annual averages. Volume fluxes computed throughout the simulation are presented and the response of the model to severe storms is shown. Finally, it was possible to assess the kinetic energy budget in the Marmara Sea.
Ali Aydoğdu, Timothy J. Hoar, Tomislava Vukicevic, Jeffrey L. Anderson, Nadia Pinardi, Alicia Karspeck, Jonathan Hendricks, Nancy Collins, Francesca Macchia, and Emin Özsoy
Nonlin. Processes Geophys., 25, 537–551, https://doi.org/10.5194/npg-25-537-2018, https://doi.org/10.5194/npg-25-537-2018, 2018
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This study presents, to our knowledge, the first data assimilation experiments in the Sea of Marmara. We propose a FerryBox network for monitoring the state of the sea and show that assimilation of the temperature and salinity improves the forecasts in the basin. The flow of the Bosphorus helps to propagate the error reduction. The study can be taken as a step towards a marine forecasting system in the Sea of Marmara that will help to improve the forecasts in the adjacent Black and Aegean seas.
Giorgia Verri, Nadia Pinardi, David Gochis, Joseph Tribbia, Antonio Navarra, Giovanni Coppini, and Tomislava Vukicevic
Nat. Hazards Earth Syst. Sci., 17, 1741–1761, https://doi.org/10.5194/nhess-17-1741-2017, https://doi.org/10.5194/nhess-17-1741-2017, 2017
Giovanni Coppini, Palmalisa Marra, Rita Lecci, Nadia Pinardi, Sergio Cretì, Mario Scalas, Luca Tedesco, Alessandro D'Anca, Leopoldo Fazioli, Antonio Olita, Giuseppe Turrisi, Cosimo Palazzo, Giovanni Aloisio, Sandro Fiore, Antonio Bonaduce, Yogesh Vittal Kumkar, Stefania Angela Ciliberti, Ivan Federico, Gianandrea Mannarini, Paola Agostini, Roberto Bonarelli, Sara Martinelli, Giorgia Verri, Letizia Lusito, Davide Rollo, Arturo Cavallo, Antonio Tumolo, Tony Monacizzo, Marco Spagnulo, Rorberto Sorgente, Andrea Cucco, Giovanni Quattrocchi, Marina Tonani, Massimiliano Drudi, Paola Nassisi, Laura Conte, Laura Panzera, Antonio Navarra, and Giancarlo Negro
Nat. Hazards Earth Syst. Sci., 17, 533–547, https://doi.org/10.5194/nhess-17-533-2017, https://doi.org/10.5194/nhess-17-533-2017, 2017
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SeaConditions aims to support the users by providing the environmental information in due time and with adequate accuracy in the marine and coastal environments, enforcing users' sea situational awareness. SeaConditions consists of a web and mobile application for the provision of meteorological and oceanographic observation and forecasting products. The iOS/Android apps were downloaded by more than 105 000 users and more than 100 000 users have visited the web version (www.sea-conditions.com).
Alessandro D'Anca, Laura Conte, Paola Nassisi, Cosimo Palazzo, Rita Lecci, Sergio Cretì, Marco Mancini, Alessandra Nuzzo, Maria Mirto, Gianandrea Mannarini, Giovanni Coppini, Sandro Fiore, and Giovanni Aloisio
Nat. Hazards Earth Syst. Sci., 17, 171–184, https://doi.org/10.5194/nhess-17-171-2017, https://doi.org/10.5194/nhess-17-171-2017, 2017
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Updated situational sea awareness requires an advanced technological system to make data available for decision makers, improving the capacity of intervention and supporting users in managing emergency situations due to natural hazards. The TESSA data platform meets the request of near-real-time access to heterogeneous data with different accuracy, resolution or degrees of aggregation providing efficient and secure data access and strong support to operational oceanographic high-level services.
Ivan Federico, Nadia Pinardi, Giovanni Coppini, Paolo Oddo, Rita Lecci, and Michele Mossa
Nat. Hazards Earth Syst. Sci., 17, 45–59, https://doi.org/10.5194/nhess-17-45-2017, https://doi.org/10.5194/nhess-17-45-2017, 2017
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SANIFS (Southern Adriatic Northern Ionian coastal Forecasting System) is a coastal-ocean operational system based on the unstructured grid finite-element three-dimensional hydrodynamic SHYFEM model, which provides short-term forecasts. The operational chain is based on a downscaling approach starting from the large-scale system for the entire Mediterranean Basin (MFS, Mediterranean Forecasting System), which provides initial and boundary condition fields for the nested system.
Zhaoyi Wang, Andrea Storto, Nadia Pinardi, Guimei Liu, and Hui Wang
Nat. Hazards Earth Syst. Sci., 17, 17–30, https://doi.org/10.5194/nhess-17-17-2017, https://doi.org/10.5194/nhess-17-17-2017, 2017
Venkatramani Balaji, Eric Maisonnave, Niki Zadeh, Bryan N. Lawrence, Joachim Biercamp, Uwe Fladrich, Giovanni Aloisio, Rusty Benson, Arnaud Caubel, Jeffrey Durachta, Marie-Alice Foujols, Grenville Lister, Silvia Mocavero, Seth Underwood, and Garrett Wright
Geosci. Model Dev., 10, 19–34, https://doi.org/10.5194/gmd-10-19-2017, https://doi.org/10.5194/gmd-10-19-2017, 2017
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Climate models are among the most computationally expensive scientific applications in the world. We present a set of measures of computational performance that can be used to compare models that are independent of underlying hardware and the model formulation. They are easy to collect and reflect performance actually achieved in practice. We are preparing a systematic effort to collect these metrics for the world's climate models during CMIP6, the next Climate Model Intercomparison Project.
Giovanni Coppini, Eric Jansen, Giuseppe Turrisi, Sergio Creti, Elena Yurievna Shchekinova, Nadia Pinardi, Rita Lecci, Ivano Carluccio, Yogesh Vittal Kumkar, Alessandro D'Anca, Gianandrea Mannarini, Sara Martinelli, Palmalisa Marra, Tommaso Capodiferro, and Tommaso Gismondi
Nat. Hazards Earth Syst. Sci., 16, 2713–2727, https://doi.org/10.5194/nhess-16-2713-2016, https://doi.org/10.5194/nhess-16-2713-2016, 2016
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A new web-based and mobile Decision Support System (DSS) for Search-And-Rescue (SAR) at sea is presented, and its performance is evaluated using real case scenarios. The system, named OCEAN-SAR, is accessible via the website http://www.ocean-sar.com. OCEAN-SAR simulates drifting objects at sea, using as input ocean currents and wind. The performance of the service is evaluated by comparing simulations to data from the Italian Coast Guard pertaining to actual incidents in the Mediterranean Sea.
Nadia Pinardi, Vladyslav Lyubartsev, Nicola Cardellicchio, Claudio Caporale, Stefania Ciliberti, Giovanni Coppini, Francesca De Pascalis, Lorenzo Dialti, Ivan Federico, Marco Filippone, Alessandro Grandi, Matteo Guideri, Rita Lecci, Lamberto Lamberti, Giuliano Lorenzetti, Paolo Lusiani, Cosimo Damiano Macripo, Francesco Maicu, Michele Mossa, Diego Tartarini, Francesco Trotta, Georg Umgiesser, and Luca Zaggia
Nat. Hazards Earth Syst. Sci., 16, 2623–2639, https://doi.org/10.5194/nhess-16-2623-2016, https://doi.org/10.5194/nhess-16-2623-2016, 2016
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A multiscale sampling experiment was carried out in the Gulf of Taranto (eastern Mediterranean) providing the first synoptic evidence of the large-scale circulation structure and associated mesoscale variability. The circulation is shown to be dominated by an anticyclonic gyre and upwelling areas at the gyre periphery.
Maria Gabriella Gaeta, Achilleas G. Samaras, Ivan Federico, Renata Archetti, Francesco Maicu, and Giuliano Lorenzetti
Nat. Hazards Earth Syst. Sci., 16, 2071–2083, https://doi.org/10.5194/nhess-16-2071-2016, https://doi.org/10.5194/nhess-16-2071-2016, 2016
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The present work describes an operational strategy for the development of a multiscale modeling system, based on a multiple–nesting approach and open–source numerical models. The strategy was applied and validated for the Gulf of Taranto in southern Italy, scaling large–scale oceanographic model results to high–resolution coupled-wave 3-D hydrodynamics simulations for the area of Mar Grande in Taranto. The spatial and temporal high-resolution simulations were performed using the open source.
Emanuela Fiori, Marco Zavatarelli, Nadia Pinardi, Cristina Mazziotti, and Carla Rita Ferrari
Nat. Hazards Earth Syst. Sci., 16, 2043–2054, https://doi.org/10.5194/nhess-16-2043-2016, https://doi.org/10.5194/nhess-16-2043-2016, 2016
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This study shows the capability of the numerical model in reproducing the trophic index (TRIX) calculated from in situ data. The ecosystem simulations can represent an important support for monitoring activities, allowing the use of TRIX to be extended to larger areas where in situ sampling activities are difficult to implement. The model TRIX was calculated for the whole Adriatic Sea, showing trophic differences across the Adriatic Sea.
Svitlana Liubartseva, Giovanni Coppini, Nadia Pinardi, Michela De Dominicis, Rita Lecci, Giuseppe Turrisi, Sergio Cretì, Sara Martinelli, Paola Agostini, Palmalisa Marra, and Francesco Palermo
Nat. Hazards Earth Syst. Sci., 16, 2009–2020, https://doi.org/10.5194/nhess-16-2009-2016, https://doi.org/10.5194/nhess-16-2009-2016, 2016
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An innovative fully operational 24/7 web-based decision support system, WITOIL (Where Is The Oil), has been developed to support oil pollution response. The system meets the real-time requirements in terms of performance and dynamic service delivery. Comprehensive computational resources and network bandwidth efficiently support the multi-user regime. The eight-language graphical user interface incorporates a great variety of user services, e.g., help and support, tooltips, and video tutorials.
Jenny Pistoia, Nadia Pinardi, Paolo Oddo, Matthew Collins, Gerasimos Korres, and Yann Drillet
Nat. Hazards Earth Syst. Sci., 16, 1807–1819, https://doi.org/10.5194/nhess-16-1807-2016, https://doi.org/10.5194/nhess-16-1807-2016, 2016
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In this work we developed a new multi-model super-ensemble method to estimate sea surface temperature, an important product of ocean analysis systems. We find that ensemble size, quality, type of members and the training period length are all important elements of the MMSE methodology and require careful calibration. We show that with a rather limited but overconfident data set (with a low bias of the starting ensemble members) the RMSE analysis can be improved.
Gianandrea Mannarini, Giuseppe Turrisi, Alessandro D'Anca, Mario Scalas, Nadia Pinardi, Giovanni Coppini, Francesco Palermo, Ivano Carluccio, Matteo Scuro, Sergio Cretì, Rita Lecci, Paola Nassisi, and Luca Tedesco
Nat. Hazards Earth Syst. Sci., 16, 1791–1806, https://doi.org/10.5194/nhess-16-1791-2016, https://doi.org/10.5194/nhess-16-1791-2016, 2016
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Safety and efficiency of navigation can be enhanced through a better situational awareness at sea. We designed and realized an operational infrastructure for providing the navigators with optimal routes through various devices: PC, tablets, and smartphones. Sea-state and wind forecasts are used as inputs. Both motor- and sailboat routes are addressed by VISIR.
Eric Jansen, Giovanni Coppini, and Nadia Pinardi
Nat. Hazards Earth Syst. Sci., 16, 1623–1628, https://doi.org/10.5194/nhess-16-1623-2016, https://doi.org/10.5194/nhess-16-1623-2016, 2016
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In March 2014, a commercial airliner vanished without a trace. The main wreckage of the plane was never recovered, except for some small parts that washed up more than 17 months after the disappearance. In this paper we show a method to model the most likely trajectories of floating debris from the aircraft. The results show that the assumed area of the crash site is compatible with the recovered debris and predict that further debris may be found along the African east coast.
Jun She, Icarus Allen, Erik Buch, Alessandro Crise, Johnny A. Johannessen, Pierre-Yves Le Traon, Urmas Lips, Glenn Nolan, Nadia Pinardi, Jan H. Reißmann, John Siddorn, Emil Stanev, and Henning Wehde
Ocean Sci., 12, 953–976, https://doi.org/10.5194/os-12-953-2016, https://doi.org/10.5194/os-12-953-2016, 2016
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This white paper addresses key scientific challenges and research priorities for the development of operational oceanography in Europe for the next 5–10 years. Knowledge gaps and deficiencies are identified in relation to common scientific challenges in four EuroGOOS knowledge areas: European ocean observations, modelling and forecasting technology, coastal operational oceanography, and operational ecology.
Italo Epicoco, Silvia Mocavero, Francesca Macchia, Marcello Vichi, Tomas Lovato, Simona Masina, and Giovanni Aloisio
Geosci. Model Dev., 9, 2115–2128, https://doi.org/10.5194/gmd-9-2115-2016, https://doi.org/10.5194/gmd-9-2115-2016, 2016
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The present work aims at evaluating the scalability performance of a high-resolution global ocean biogeochemistry model (PELAGOS025) on massive parallel architectures and the benefits in terms of the time-to-solution reduction. The outcome of the analysis demonstrated that the lack of scalability is due to several factors such as the I/O operations, the memory contention, and the load unbalancing due to the memory structure of the biogeochemistry model component.
Gianandrea Mannarini, Nadia Pinardi, Giovanni Coppini, Paolo Oddo, and Alessandro Iafrati
Geosci. Model Dev., 9, 1597–1625, https://doi.org/10.5194/gmd-9-1597-2016, https://doi.org/10.5194/gmd-9-1597-2016, 2016
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VISIR is a new numerical model for the computation of optimal ship routes from meteo-marine forecasts. VISIR offers the scientific community an open platform whereby various ideas and methods for ship route optimization can be shared, tested, and compared to each other.
P. Oddo, A. Bonaduce, N. Pinardi, and A. Guarnieri
Geosci. Model Dev., 7, 3001–3015, https://doi.org/10.5194/gmd-7-3001-2014, https://doi.org/10.5194/gmd-7-3001-2014, 2014
A. Guarnieri, A. J. Souza, N. Pinardi, and P. Traykovski
Ocean Sci. Discuss., https://doi.org/10.5194/osd-11-1391-2014, https://doi.org/10.5194/osd-11-1391-2014, 2014
Revised manuscript not accepted
M. De Dominicis, N. Pinardi, G. Zodiatis, and R. Lardner
Geosci. Model Dev., 6, 1851–1869, https://doi.org/10.5194/gmd-6-1851-2013, https://doi.org/10.5194/gmd-6-1851-2013, 2013
M. De Dominicis, N. Pinardi, G. Zodiatis, and R. Archetti
Geosci. Model Dev., 6, 1871–1888, https://doi.org/10.5194/gmd-6-1871-2013, https://doi.org/10.5194/gmd-6-1871-2013, 2013
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Barotropic tides in MPAS-Ocean (E3SM V2): impact of ice shelf cavities
Using the two-way nesting technique AGRIF with MARS3D V11.2 to improve hydrodynamics and estimate environmental indicators
Multidecadal and climatological surface current simulations for the southwestern Indian Ocean at 1∕50° resolution
The tidal effects in the Finite-volumE Sea ice–Ocean Model (FESOM2.1): a comparison between parameterised tidal mixing and explicit tidal forcing
HIDRA2: deep-learning ensemble sea level and storm tide forecasting in the presence of seiches – the case of the northern Adriatic
Peter Mlakar, Antonio Ricchi, Sandro Carniel, Davide Bonaldo, and Matjaž Ličer
Geosci. Model Dev., 17, 4705–4725, https://doi.org/10.5194/gmd-17-4705-2024, https://doi.org/10.5194/gmd-17-4705-2024, 2024
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We propose a new point-prediction model, the DEep Learning WAVe Emulating model (DELWAVE), which successfully emulates the Simulating WAves Nearshore model (SWAN) over synoptic to climate timescales. Compared to control climatology over all wind directions, the mismatch between DELWAVE and SWAN is generally small compared to the difference between scenario and control conditions, suggesting that the noise introduced by surrogate modelling is substantially weaker than the climate change signal.
Susanna Winkelbauer, Michael Mayer, and Leopold Haimberger
Geosci. Model Dev., 17, 4603–4620, https://doi.org/10.5194/gmd-17-4603-2024, https://doi.org/10.5194/gmd-17-4603-2024, 2024
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Oceanic transports shape the global climate, but the evaluation and validation of this key quantity based on reanalysis and model data are complicated by the distortion of the used modelling grids and the large number of different grid types. We present two new methods that allow the calculation of oceanic fluxes of volume, heat, salinity, and ice through almost arbitrary sections for various models and reanalyses that are independent of the used modelling grids.
Xiaoyu Fan, Baylor Fox-Kemper, Nobuhiro Suzuki, Qing Li, Patrick Marchesiello, Peter P. Sullivan, and Paul S. Hall
Geosci. Model Dev., 17, 4095–4113, https://doi.org/10.5194/gmd-17-4095-2024, https://doi.org/10.5194/gmd-17-4095-2024, 2024
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Simulations of the oceanic turbulent boundary layer using the nonhydrostatic CROCO ROMS and NCAR-LES models are compared. CROCO and the NCAR-LES are accurate in a similar manner, but CROCO’s additional features (e.g., nesting and realism) and its compressible turbulence formulation carry additional costs.
Jilian Xiong and Parker MacCready
Geosci. Model Dev., 17, 3341–3356, https://doi.org/10.5194/gmd-17-3341-2024, https://doi.org/10.5194/gmd-17-3341-2024, 2024
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The new offline particle tracking package, Tracker v1.1, is introduced to the Regional Ocean Modeling System, featuring an efficient nearest-neighbor algorithm to enhance particle-tracking speed. Its performance was evaluated against four other tracking packages and passive dye. Despite unique features, all packages yield comparable results. Running multiple packages within the same circulation model allows comparison of their performance and ease of use.
Sylvain Cailleau, Laurent Bessières, Léonel Chiendje, Flavie Dubost, Guillaume Reffray, Jean-Michel Lellouche, Simon van Gennip, Charly Régnier, Marie Drevillon, Marc Tressol, Matthieu Clavier, Julien Temple-Boyer, and Léo Berline
Geosci. Model Dev., 17, 3157–3173, https://doi.org/10.5194/gmd-17-3157-2024, https://doi.org/10.5194/gmd-17-3157-2024, 2024
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In order to improve Sargassum drift forecasting in the Caribbean area, drift models can be forced by higher-resolution ocean currents. To this goal a 3 km resolution regional ocean model has been developed. Its assessment is presented with a particular focus on the reproduction of fine structures representing key features of the Caribbean region dynamics and Sargassum transport. The simulated propagation of a North Brazil Current eddy and its dissipation was found to be quite realistic.
Gaetano Porcile, Anne-Claire Bennis, Martial Boutet, Sophie Le Bot, Franck Dumas, and Swen Jullien
Geosci. Model Dev., 17, 2829–2853, https://doi.org/10.5194/gmd-17-2829-2024, https://doi.org/10.5194/gmd-17-2829-2024, 2024
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Here a new method of modelling the interaction between ocean currents and waves is presented. We developed an advanced coupling of two models, one for ocean currents and one for waves. In previous couplings, some wave-related calculations were based on simplified assumptions. Our method uses more complex calculations to better represent wave–current interactions. We tested it in a macro-tidal coastal area and found that it significantly improves the model accuracy, especially during storms.
Colette Gabrielle Kerry, Moninya Roughan, Shane Keating, David Gwyther, Gary Brassington, Adil Siripatana, and Joao Marcos A. C. Souza
Geosci. Model Dev., 17, 2359–2386, https://doi.org/10.5194/gmd-17-2359-2024, https://doi.org/10.5194/gmd-17-2359-2024, 2024
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Ocean forecasting relies on the combination of numerical models and ocean observations through data assimilation (DA). Here we assess the performance of two DA systems in a dynamic western boundary current, the East Australian Current, across a common modelling and observational framework. We show that the more advanced, time-dependent method outperforms the time-independent method for forecast horizons of 5 d. This advocates the use of advanced methods for highly variable oceanic regions.
Ivan Hernandez, Leidy M. Castro-Rosero, Manuel Espino, and Jose M. Alsina Torrent
Geosci. Model Dev., 17, 2221–2245, https://doi.org/10.5194/gmd-17-2221-2024, https://doi.org/10.5194/gmd-17-2221-2024, 2024
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The LOCATE numerical model was developed to conduct Lagrangian simulations of the transport and dispersion of marine debris at coastal scales. High-resolution hydrodynamic data and a beaching module that used particle distance to the shore for land–water boundary detection were used on a realistic debris discharge scenario comparing hydrodynamic data at various resolutions. Coastal processes and complex geometric structures were resolved when using nested grids and distance-to-shore beaching.
Neill Mackay, Jan Zika, Taimoor Sohail, Richard Williams, Oliver Andrews, and Andrew Watson
EGUsphere, https://doi.org/10.5194/egusphere-2023-2448, https://doi.org/10.5194/egusphere-2023-2448, 2024
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The ocean absorbs carbon dioxide from the atmosphere, mitigating climate change, but estimates of the uptake do not always agree. There is a need to reconcile these differing estimates, and to improve our understanding of ocean carbon uptake. We present a new method for estimating ocean carbon uptake and test it with model data. The method effectively diagnoses the ocean carbon uptake from limited data, and therefore shows promise for reconciling different observational estimates.
Ngoc B. Trinh, Marine Herrmann, Caroline Ulses, Patrick Marsaleix, Thomas Duhaut, Thai To Duy, Claude Estournel, and R. Kipp Shearman
Geosci. Model Dev., 17, 1831–1867, https://doi.org/10.5194/gmd-17-1831-2024, https://doi.org/10.5194/gmd-17-1831-2024, 2024
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A high-resolution model was built to study the South China Sea (SCS) water, heat, and salt budgets. Model performance is demonstrated by comparison with observations and simulations. Important discards are observed if calculating offline, instead of online, lateral inflows and outflows of water, heat, and salt. The SCS mainly receives water from the Luzon Strait and releases it through the Mindoro, Taiwan, and Karimata straits. SCS surface interocean water exchanges are driven by monsoon winds.
Louis Thiry, Long Li, Guillaume Roullet, and Etienne Mémin
Geosci. Model Dev., 17, 1749–1764, https://doi.org/10.5194/gmd-17-1749-2024, https://doi.org/10.5194/gmd-17-1749-2024, 2024
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We present a new way of solving the quasi-geostrophic (QG) equations, a simple set of equations describing ocean dynamics. Our method is solely based on the numerical methods used to solve the equations and requires no parameter tuning. Moreover, it can handle non-rectangular geometries, opening the way to study QG equations on realistic domains. We release a PyTorch implementation to ease future machine-learning developments on top of the presented method.
Zheqi Shen, Yihao Chen, Xiaojing Li, and Xunshu Song
Geosci. Model Dev., 17, 1651–1665, https://doi.org/10.5194/gmd-17-1651-2024, https://doi.org/10.5194/gmd-17-1651-2024, 2024
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Parameter estimation is the process that optimizes model parameters using observations, which could reduce model errors and improve forecasting. In this study, we conducted parameter estimation experiments using the CESM and the ensemble adjustment Kalman filter. The obtained initial conditions and parameters are used to perform ensemble forecast experiments for ENSO forecasting. The results revealed that parameter estimation could reduce analysis errors and improve ENSO forecast skills.
Ye Yuan, Fujiang Yu, Zhi Chen, Xueding Li, Fang Hou, Yuanyong Gao, Zhiyi Gao, and Renbo Pang
EGUsphere, https://doi.org/10.5194/egusphere-2024-169, https://doi.org/10.5194/egusphere-2024-169, 2024
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Accurate and timely forecasting of ocean waves is of great importance to the safety of marine transportation and offshore engineering. In this study, Graphics Processing Unit (GPU)-accelerated computing is introduced in the WAM (Cycle 6). With this effort, global high-resolution wave simulations now can run on GPUs up to tens of times faster than currently available models on a CPU node with just as accurate results.
Ali Abdolali, Saeideh Banihashemi, Jose Henrique Alves, Aron Roland, Tyler J. Hesser, Mary Anderson Bryant, and Jane McKee Smith
Geosci. Model Dev., 17, 1023–1039, https://doi.org/10.5194/gmd-17-1023-2024, https://doi.org/10.5194/gmd-17-1023-2024, 2024
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This article presents an overview of the development and implementation of Great Lake Wave Unstructured (GLWUv2.0), including the core model and workflow design and development. The validation was conducted against in situ data for the re-forecasted duration for summer and wintertime (ice season). The article describes the limitations and challenges encountered in the operational environment and the path forward for the next generation of wave forecast systems in enclosed basins like the GL.
Xuanxuan Gao, Shuiqing Li, Dongxue Mo, Yahao Liu, and Po Hu
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-12, https://doi.org/10.5194/gmd-2024-12, 2024
Revised manuscript accepted for GMD
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Storm surges generate coastal inundation and expose populations and properties in danger. We developed a novel storm surge inundation model for efficient prediction. Estimates compare well with in-situ measurements and results from a numerical model. The new model significantly improves over the existing numerical models with much higher computational efficiency and stability, which allows timely disaster prevention and mitigation.
Vincenzo de Toma, Daniele Ciani, Yassmin Hesham Essa, Chunxue Yang, Vincenzo Artale, Andrea Pisano, Davide Cavaliere, Rosalia Santoleri, and Andrea Storto
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-13, https://doi.org/10.5194/gmd-2024-13, 2024
Revised manuscript accepted for GMD
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This study explores methods to reconstruct diurnal variations in skin sea surface temperature in a model of the Mediterranean Sea. Our new approach, considering chlorophyll concentration, enhances spatial and temporal variations in the warm layer. Comparative analysis shows context-dependent improvements. The proposed "chlorophyll-interactive" method brings the surface net total heat flux closer to zero annually, despite a net heat loss from the ocean to the atmosphere.
Krysten Rutherford, Laura Bianucci, and William Floyd
EGUsphere, https://doi.org/10.5194/egusphere-2023-3064, https://doi.org/10.5194/egusphere-2023-3064, 2024
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Nearshore ocean models often lack complete information about freshwater fluxes due to numerous ungauged rivers and streams. We tested a simple rain-based hydrological model as inputs into an ocean model of Quatsino Sound, B.C., Canada with the aim of improving the representation of the land-ocean connection in the nearshore model. Through multiple tests, we found that the performance of the ocean model improved when providing 60 % or more of the freshwater inputs from the simple runoff model.
Qiang Wang, Qi Shu, Alexandra Bozec, Eric P. Chassignet, Pier Giuseppe Fogli, Baylor Fox-Kemper, Andy McC. Hogg, Doroteaciro Iovino, Andrew E. Kiss, Nikolay Koldunov, Julien Le Sommer, Yiwen Li, Pengfei Lin, Hailong Liu, Igor Polyakov, Patrick Scholz, Dmitry Sidorenko, Shizhu Wang, and Xiaobiao Xu
Geosci. Model Dev., 17, 347–379, https://doi.org/10.5194/gmd-17-347-2024, https://doi.org/10.5194/gmd-17-347-2024, 2024
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Increasing resolution improves model skills in simulating the Arctic Ocean, but other factors such as parameterizations and numerics are at least of the same importance for obtaining reliable simulations.
Mohamed Ayache, Jean-Claude Dutay, Anne Mouchet, Kazuyo Tachikawa, Camille Risi, and Gilles Ramstein
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-237, https://doi.org/10.5194/gmd-2023-237, 2024
Revised manuscript accepted for GMD
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Water isotopes (δ18O, δD) are one of the most widely used proxies in ocean climate research. Previous studies using water isotope observations and modelling have highlighted the importance of understanding spatial and temporal isotopic variability for a quantitative interpretation of these tracers. Here we present the first results of a high-resolution regional dynamical model (at 1/12° horizontal resolution) developed for the Mediterranean Sea, one of the hotspots of ongoing climate change.
Andrew C. Ross, Charles A. Stock, Alistair Adcroft, Enrique Curchitser, Robert Hallberg, Matthew J. Harrison, Katherine Hedstrom, Niki Zadeh, Michael Alexander, Wenhao Chen, Elizabeth J. Drenkard, Hubert du Pontavice, Raphael Dussin, Fabian Gomez, Jasmin G. John, Dujuan Kang, Diane Lavoie, Laure Resplandy, Alizée Roobaert, Vincent Saba, Sang-Ik Shin, Samantha Siedlecki, and James Simkins
Geosci. Model Dev., 16, 6943–6985, https://doi.org/10.5194/gmd-16-6943-2023, https://doi.org/10.5194/gmd-16-6943-2023, 2023
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We evaluate a model for northwest Atlantic Ocean dynamics and biogeochemistry that balances high resolution with computational economy by building on the new regional features in the MOM6 ocean model and COBALT biogeochemical model. We test the model's ability to simulate impactful historical variability and find that the model simulates the mean state and variability of most features well, which suggests the model can provide information to inform living-marine-resource applications.
Luca Arpaia, Christian Ferrarin, Marco Bajo, and Georg Umgiesser
Geosci. Model Dev., 16, 6899–6919, https://doi.org/10.5194/gmd-16-6899-2023, https://doi.org/10.5194/gmd-16-6899-2023, 2023
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We propose a discrete multilayer shallow water model based on z-layers which, thanks to the insertion and removal of surface layers, can deal with an arbitrarily large tidal oscillation independently of the vertical resolution. The algorithm is based on a two-step procedure used in numerical simulations with moving boundaries (grid movement followed by a grid topology change, that is, the insertion/removal of surface layers), which avoids the appearance of very thin surface layers.
Lucille Barré, Frédéric Diaz, Thibaut Wagener, France Van Wambeke, Camille Mazoyer, Christophe Yohia, and Christel Pinazo
Geosci. Model Dev., 16, 6701–6739, https://doi.org/10.5194/gmd-16-6701-2023, https://doi.org/10.5194/gmd-16-6701-2023, 2023
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While several studies have shown that mixotrophs play a crucial role in the carbon cycle, the impact of environmental forcings on their dynamics remains poorly investigated. Using a biogeochemical model that considers mixotrophs, we study the impact of light and nutrient concentration on the ecosystem composition in a highly dynamic Mediterranean coastal area: the Bay of Marseille. We show that mixotrophs cope better with oligotrophic conditions compared to strict auto- and heterotrophs.
Trygve Halsne, Kai Håkon Christensen, Gaute Hope, and Øyvind Breivik
Geosci. Model Dev., 16, 6515–6530, https://doi.org/10.5194/gmd-16-6515-2023, https://doi.org/10.5194/gmd-16-6515-2023, 2023
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Surface waves that propagate in oceanic or coastal environments get influenced by their surroundings. Changes in the ambient current or the depth profile affect the wave propagation path, and the change in wave direction is called refraction. Some analytical solutions to the governing equations exist under ideal conditions, but for realistic situations, the equations must be solved numerically. Here we present such a numerical solver under an open-source license.
Jiangyu Li, Shaoqing Zhang, Qingxiang Liu, Xiaolin Yu, and Zhiwei Zhang
Geosci. Model Dev., 16, 6393–6412, https://doi.org/10.5194/gmd-16-6393-2023, https://doi.org/10.5194/gmd-16-6393-2023, 2023
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Ocean surface waves play an important role in the air–sea interface but are rarely activated in high-resolution Earth system simulations due to their expensive computational costs. To alleviate this situation, this paper designs a new wave modeling framework with a multiscale grid system. Evaluations of a series of numerical experiments show that it has good feasibility and applicability in the WAVEWATCH III model, WW3, and can achieve the goals of efficient and high-precision wave simulation.
Doroteaciro Iovino, Pier Giuseppe Fogli, and Simona Masina
Geosci. Model Dev., 16, 6127–6159, https://doi.org/10.5194/gmd-16-6127-2023, https://doi.org/10.5194/gmd-16-6127-2023, 2023
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This paper describes the model performance of three global ocean–sea ice configurations, from non-eddying (1°) to eddy-rich (1/16°) resolutions. Model simulations are obtained following the Ocean Model Intercomparison Project phase 2 (OMIP2) protocol. We compare key global climate variables across the three models and against observations, emphasizing the relative advantages and disadvantages of running forced ocean–sea ice models at higher resolution.
Johannes Röhrs, Yvonne Gusdal, Edel S. U. Rikardsen, Marina Durán Moro, Jostein Brændshøi, Nils Melsom Kristensen, Sindre Fritzner, Keguang Wang, Ann Kristin Sperrevik, Martina Idžanović, Thomas Lavergne, Jens Boldingh Debernard, and Kai H. Christensen
Geosci. Model Dev., 16, 5401–5426, https://doi.org/10.5194/gmd-16-5401-2023, https://doi.org/10.5194/gmd-16-5401-2023, 2023
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A model to predict ocean currents, temperature, and sea ice is presented, covering the Barents Sea and northern Norway. To quantify forecast uncertainties, the model calculates ensemble forecasts with 24 realizations of ocean and ice conditions. Observations from satellites, buoys, and ships are ingested by the model. The model forecasts are compared with observations, and we show that the ocean model has skill in predicting sea surface temperatures.
Jin-Song von Storch, Eileen Hertwig, Veit Lüschow, Nils Brüggemann, Helmuth Haak, Peter Korn, and Vikram Singh
Geosci. Model Dev., 16, 5179–5196, https://doi.org/10.5194/gmd-16-5179-2023, https://doi.org/10.5194/gmd-16-5179-2023, 2023
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The new ocean general circulation model ICON-O is developed for running experiments at kilometer scales and beyond. One targeted application is to simulate internal tides crucial for ocean mixing. To ensure their realism, which is difficult to assess, we evaluate the barotropic tides that generate internal tides. We show that ICON-O is able to realistically simulate the major aspects of the observed barotropic tides and discuss the aspects that impact the quality of the simulated tides.
Bror F. Jönsson, Christopher L. Follett, Jacob Bien, Stephanie Dutkiewicz, Sangwon Hyun, Gemma Kulk, Gael L. Forget, Christian Müller, Marie-Fanny Racault, Christopher N. Hill, Thomas Jackson, and Shubha Sathyendranath
Geosci. Model Dev., 16, 4639–4657, https://doi.org/10.5194/gmd-16-4639-2023, https://doi.org/10.5194/gmd-16-4639-2023, 2023
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While biogeochemical models and satellite-derived ocean color data provide unprecedented information, it is problematic to compare them. Here, we present a new approach based on comparing probability density distributions of model and satellite properties to assess model skills. We also introduce Earth mover's distances as a novel and powerful metric to quantify the misfit between models and observations. We find that how 3D chlorophyll fields are aggregated can be a significant source of error.
Rafael Santana, Helen Macdonald, Joanne O'Callaghan, Brian Powell, Sarah Wakes, and Sutara H. Suanda
Geosci. Model Dev., 16, 3675–3698, https://doi.org/10.5194/gmd-16-3675-2023, https://doi.org/10.5194/gmd-16-3675-2023, 2023
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We show the importance of assimilating subsurface temperature and velocity data in a model of the East Auckland Current. Assimilation of velocity increased the representation of large oceanic vortexes. Assimilation of temperature is needed to correctly simulate temperatures around 100 m depth, which is the most difficult region to simulate in ocean models. Our simulations showed improved results in comparison to the US Navy global model and highlight the importance of regional models.
David Byrne, Jeff Polton, Enda O'Dea, and Joanne Williams
Geosci. Model Dev., 16, 3749–3764, https://doi.org/10.5194/gmd-16-3749-2023, https://doi.org/10.5194/gmd-16-3749-2023, 2023
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Validation is a crucial step during the development of models for ocean simulation. The purpose of validation is to assess how accurate a model is. It is most commonly done by comparing output from a model to actual observations. In this paper, we introduce and demonstrate usage of the COAsT Python package to standardise the validation process for physical ocean models. We also discuss our five guiding principles for standardised validation.
Katherine Hutchinson, Julie Deshayes, Christian Éthé, Clément Rousset, Casimir de Lavergne, Martin Vancoppenolle, Nicolas C. Jourdain, and Pierre Mathiot
Geosci. Model Dev., 16, 3629–3650, https://doi.org/10.5194/gmd-16-3629-2023, https://doi.org/10.5194/gmd-16-3629-2023, 2023
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Bottom Water constitutes the lower half of the ocean’s overturning system and is primarily formed in the Weddell and Ross Sea in the Antarctic due to interactions between the atmosphere, ocean, sea ice and ice shelves. Here we use a global ocean 1° resolution model with explicit representation of the three large ice shelves important for the formation of the parent waters of Bottom Water. We find doing so reduces salt biases, improves water mass realism and gives realistic ice shelf melt rates.
Daniele Bianchi, Daniel McCoy, and Simon Yang
Geosci. Model Dev., 16, 3581–3609, https://doi.org/10.5194/gmd-16-3581-2023, https://doi.org/10.5194/gmd-16-3581-2023, 2023
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We present NitrOMZ, a new model of the oceanic nitrogen cycle that simulates chemical transformations within oxygen minimum zones (OMZs). We describe the model formulation and its implementation in a one-dimensional representation of the water column before evaluating its ability to reproduce observations in the eastern tropical South Pacific. We conclude by describing the model sensitivity to parameter choices and environmental factors and its application to nitrogen cycling in the ocean.
Rui Sun, Alison Cobb, Ana B. Villas Bôas, Sabique Langodan, Aneesh C. Subramanian, Matthew R. Mazloff, Bruce D. Cornuelle, Arthur J. Miller, Raju Pathak, and Ibrahim Hoteit
Geosci. Model Dev., 16, 3435–3458, https://doi.org/10.5194/gmd-16-3435-2023, https://doi.org/10.5194/gmd-16-3435-2023, 2023
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In this work, we integrated the WAVEWATCH III model into the regional coupled model SKRIPS. We then performed a case study using the newly implemented model to study Tropical Cyclone Mekunu, which occurred in the Arabian Sea. We found that the coupled model better simulates the cyclone than the uncoupled model, but the impact of waves on the cyclone is not significant. However, the waves change the sea surface temperature and mixed layer, especially in the cold waves produced due to the cyclone.
Pengcheng Wang and Natacha B. Bernier
Geosci. Model Dev., 16, 3335–3354, https://doi.org/10.5194/gmd-16-3335-2023, https://doi.org/10.5194/gmd-16-3335-2023, 2023
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Effects of sea ice are typically neglected in operational flood forecast systems. In this work, we capture these effects via the addition of a parameterized ice–ocean stress. The parameterization takes advantage of forecast fields from an advanced ice–ocean model and features a novel, consistent representation of the tidal relative ice–ocean velocity. The new parameterization leads to improved forecasts of tides and storm surges in polar regions. Associated physical processes are discussed.
Yue Xu and Xiping Yu
Geosci. Model Dev., 16, 2811–2831, https://doi.org/10.5194/gmd-16-2811-2023, https://doi.org/10.5194/gmd-16-2811-2023, 2023
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An accurate description of the wind energy input into ocean waves is crucial to ocean wave modeling, and a physics-based consideration of the effect of wave breaking is absolutely necessary to obtain such an accurate description, particularly under extreme conditions. This study evaluates the performance of a recently improved formula, taking into account not only the effect of breaking but also the effect of airflow separation on the leeside of steep wave crests in a reasonably consistent way.
Yankun Gong, Xueen Chen, Jiexin Xu, Jieshuo Xie, Zhiwu Chen, Yinghui He, and Shuqun Cai
Geosci. Model Dev., 16, 2851–2871, https://doi.org/10.5194/gmd-16-2851-2023, https://doi.org/10.5194/gmd-16-2851-2023, 2023
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Internal solitary waves (ISWs) play crucial roles in mass transport and ocean mixing in the northern South China Sea. Massive numerical investigations have been conducted in this region, but there was no systematic evaluation of a three-dimensional model about precisely simulating ISWs. Here, an ISW forecasting model is employed to evaluate the roles of resolution, tidal forcing and stratification in accurately reproducing wave properties via comparison to field and remote-sensing observations.
Johannes Bieser, David J. Amptmeijer, Ute Daewel, Joachim Kuss, Anne L. Soerensen, and Corinna Schrum
Geosci. Model Dev., 16, 2649–2688, https://doi.org/10.5194/gmd-16-2649-2023, https://doi.org/10.5194/gmd-16-2649-2023, 2023
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MERCY is a 3D model to study mercury (Hg) cycling in the ocean. Hg is a highly harmful pollutant regulated by the UN Minamata Convention on Mercury due to widespread human emissions. These emissions eventually reach the oceans, where Hg transforms into the even more toxic and bioaccumulative pollutant methylmercury. MERCY predicts the fate of Hg in the ocean and its buildup in the food chain. It is the first model to consider Hg accumulation in fish, a major source of Hg exposure for humans.
Y. Joseph Zhang, Tomas Fernandez-Montblanc, William Pringle, Hao-Cheng Yu, Linlin Cui, and Saeed Moghimi
Geosci. Model Dev., 16, 2565–2581, https://doi.org/10.5194/gmd-16-2565-2023, https://doi.org/10.5194/gmd-16-2565-2023, 2023
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Simulating global ocean from deep basins to coastal areas is a daunting task but is important for disaster mitigation efforts. We present a new 3D global ocean model on flexible mesh to study both tidal and nontidal processes and total water prediction. We demonstrate the potential for
seamlesssimulation, on a single mesh, from the global ocean to a few estuaries along the US West Coast. The model can serve as the backbone of a global tide surge and compound flooding forecasting framework.
Qi Shu, Qiang Wang, Chuncheng Guo, Zhenya Song, Shizhu Wang, Yan He, and Fangli Qiao
Geosci. Model Dev., 16, 2539–2563, https://doi.org/10.5194/gmd-16-2539-2023, https://doi.org/10.5194/gmd-16-2539-2023, 2023
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Ocean models are often used for scientific studies on the Arctic Ocean. Here the Arctic Ocean simulations by state-of-the-art global ocean–sea-ice models participating in the Ocean Model Intercomparison Project (OMIP) were evaluated. The simulations on Arctic Ocean hydrography, freshwater content, stratification, sea surface height, and gateway transports were assessed and the common biases were detected. The simulations forced by different atmospheric forcing were also evaluated.
Manuel Aghito, Loris Calgaro, Knut-Frode Dagestad, Christian Ferrarin, Antonio Marcomini, Øyvind Breivik, and Lars Robert Hole
Geosci. Model Dev., 16, 2477–2494, https://doi.org/10.5194/gmd-16-2477-2023, https://doi.org/10.5194/gmd-16-2477-2023, 2023
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The newly developed ChemicalDrift model can simulate the transport and fate of chemicals in the ocean and in coastal regions. The model combines ocean physics, including transport due to currents, turbulence due to surface winds and the sinking of particles to the sea floor, with ocean chemistry, such as the partitioning, the degradation and the evaporation of chemicals. The model will be utilized for risk assessment of ocean and sea-floor contamination from pollutants emitted from shipping.
Nieves G. Valiente, Andrew Saulter, Breogan Gomez, Christopher Bunney, Jian-Guo Li, Tamzin Palmer, and Christine Pequignet
Geosci. Model Dev., 16, 2515–2538, https://doi.org/10.5194/gmd-16-2515-2023, https://doi.org/10.5194/gmd-16-2515-2023, 2023
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We document the Met Office operational global and regional wave models which provide wave forecasts up to 7 d ahead. Our models present coarser resolution offshore to higher resolution near the coastline. The increased resolution led to replication of the extremes but to some overestimation during modal conditions. If currents are included, wave directions and long period swells near the coast are significantly improved. New developments focus on the optimisation of the models with resolution.
Lucille Barré, Frédéric Diaz, Thibaut Wagener, Camille Mazoyer, Christophe Yohia, and Christel Pinazo
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-34, https://doi.org/10.5194/gmd-2023-34, 2023
Revised manuscript accepted for GMD
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Carbonate system is typically studied using measurements, yet modelling can contribute valuable insights. Using a biogeochemical model, we propose a new representation of total alkalinity, dissolved inorganic carbon, pCO2 and pH in a highly dynamic Mediterranean coastal area: the Bay of Marseille, a useful addition to measurements. Through a detailed analysis of pCO2 and air-sea CO2 fluxes we show that their variations are strongly impacted by the hydrodynamic processes that affect the bay.
Maxime Beauchamp, Quentin Febvre, Hugo Georgenthum, and Ronan Fablet
Geosci. Model Dev., 16, 2119–2147, https://doi.org/10.5194/gmd-16-2119-2023, https://doi.org/10.5194/gmd-16-2119-2023, 2023
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4DVarNet is a learning-based method based on traditional data assimilation (DA). This new class of algorithms can be used to provide efficient reconstructions of a dynamical system based on single observations. We provide a 4DVarNet application to sea surface height reconstructions based on nadir and future Surface Water and Ocean and Topography data. It outperforms other methods, from optimal interpolation to sophisticated DA algorithms. This work is part of on-going AI Chair Oceanix projects.
Bin Xiao, Fangli Qiao, Qi Shu, Xunqiang Yin, Guansuo Wang, and Shihong Wang
Geosci. Model Dev., 16, 1755–1777, https://doi.org/10.5194/gmd-16-1755-2023, https://doi.org/10.5194/gmd-16-1755-2023, 2023
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A new global surface-wave–tide–circulation coupled ocean model (FIO-COM32) with a resolution of 1/32° × 1/32° is developed and validated. Both the promotion of the horizontal resolution and included physical processes are shown to be important contributors to the significant improvements in FIO-COM32 simulations. It is time to merge these separated model components (surface waves, tidal currents and ocean circulation) and start a new generation of ocean model development.
Jeff Polton, James Harle, Jason Holt, Anna Katavouta, Dale Partridge, Jenny Jardine, Sarah Wakelin, Julia Rulent, Anthony Wise, Katherine Hutchinson, David Byrne, Diego Bruciaferri, Enda O'Dea, Michela De Dominicis, Pierre Mathiot, Andrew Coward, Andrew Yool, Julien Palmiéri, Gennadi Lessin, Claudia Gabriela Mayorga-Adame, Valérie Le Guennec, Alex Arnold, and Clément Rousset
Geosci. Model Dev., 16, 1481–1510, https://doi.org/10.5194/gmd-16-1481-2023, https://doi.org/10.5194/gmd-16-1481-2023, 2023
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The aim is to increase the capacity of the modelling community to respond to societally important questions that require ocean modelling. The concept of reproducibility for regional ocean modelling is developed: advocating methods for reproducible workflows and standardised methods of assessment. Then, targeting the NEMO framework, we give practical advice and worked examples, highlighting key considerations that will the expedite development cycle and upskill the user community.
Nairita Pal, Kristin N. Barton, Mark R. Petersen, Steven R. Brus, Darren Engwirda, Brian K. Arbic, Andrew F. Roberts, Joannes J. Westerink, and Damrongsak Wirasaet
Geosci. Model Dev., 16, 1297–1314, https://doi.org/10.5194/gmd-16-1297-2023, https://doi.org/10.5194/gmd-16-1297-2023, 2023
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Understanding tides is essential to accurately predict ocean currents. Over the next several decades coastal processes such as flooding and erosion will be severely impacted due to climate change. Tides affect currents along the coastal regions the most. In this paper we show the results of implementing tides in a global ocean model known as MPAS–Ocean. We also show how Antarctic ice shelf cavities affect global tides. Our work points towards future research with tide–ice interactions.
Sébastien Petton, Valérie Garnier, Matthieu Caillaud, Laurent Debreu, and Franck Dumas
Geosci. Model Dev., 16, 1191–1211, https://doi.org/10.5194/gmd-16-1191-2023, https://doi.org/10.5194/gmd-16-1191-2023, 2023
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The nesting AGRIF library is implemented in the MARS3D hydrodynamic model, a semi-implicit, free-surface numerical model which uses a time scheme as an alternating-direction implicit (ADI) algorithm. Two applications at the regional and coastal scale are introduced. We compare the two-nesting approach to the classic offline one-way approach, based on an in situ dataset. This method is an efficient means to significantly improve the physical hydrodynamics and unravel ecological challenges.
Noam S. Vogt-Vincent and Helen L. Johnson
Geosci. Model Dev., 16, 1163–1178, https://doi.org/10.5194/gmd-16-1163-2023, https://doi.org/10.5194/gmd-16-1163-2023, 2023
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Ocean currents transport things over large distances across the ocean surface. Predicting this transport is key for tackling many environmental problems, such as marine plastic pollution and coral reef resilience. However, doing this requires a good understanding ocean currents, which is currently lacking. Here, we present and validate state-of-the-art simulations for surface currents in the southwestern Indian Ocean, which will support future marine dispersal studies across this region.
Pengyang Song, Dmitry Sidorenko, Patrick Scholz, Maik Thomas, and Gerrit Lohmann
Geosci. Model Dev., 16, 383–405, https://doi.org/10.5194/gmd-16-383-2023, https://doi.org/10.5194/gmd-16-383-2023, 2023
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Tides have essential effects on the ocean and climate. Most previous research applies parameterised tidal mixing to discuss their effects in models. By comparing the effect of a tidal mixing parameterisation and tidal forcing on the ocean state, we assess the advantages and disadvantages of the two methods. Our results show that tidal mixing in the North Pacific Ocean strongly affects the global thermohaline circulation. We also list some effects that are not considered in the parameterisation.
Marko Rus, Anja Fettich, Matej Kristan, and Matjaž Ličer
Geosci. Model Dev., 16, 271–288, https://doi.org/10.5194/gmd-16-271-2023, https://doi.org/10.5194/gmd-16-271-2023, 2023
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We propose a new fast and reliable deep-learning architecture HIDRA2 for sea level and storm surge modeling. HIDRA2 features new feature encoders and a fusion-regression block. We test HIDRA2 on Adriatic storm surges, which depend on an interaction between tides and seiches. We demonstrate that HIDRA2 learns to effectively mimic the timing and amplitude of Adriatic seiches. This is essential for reliable HIDRA2 predictions of total storm surge sea levels.
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Short summary
The full exploitation of supercomputing architectures requires a deep revision of the current climate models. This paper presents the parallelization of the three-dimensional hydrodynamic model SHYFEM (System of HydrodYnamic Finite Element Modules). Optimized numerical libraries were used to partition the model domain and solve the sparse linear system of equations in parallel. The performance assessment demonstrates a good level of scalability with a realistic configuration used as a benchmark.
The full exploitation of supercomputing architectures requires a deep revision of the current...
