Articles | Volume 10, issue 8
https://doi.org/10.5194/gmd-10-3167-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-10-3167-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
The Oceanographic Multipurpose Software Environment (OMUSE v1.0)
Institute for Marine and Atmospheric Research, Utrecht University,
Utrecht, the Netherlands
Centrum Wiskunde & Informatica,
Amsterdam, the Netherlands
Leiden Observatory, Leiden University, Leiden,
the Netherlands
Ben van Werkhoven
The Netherlands eScience Center, Amsterdam, the Netherlands
Arjen van Elteren
Leiden Observatory, Leiden University, Leiden,
the Netherlands
Jan Viebahn
Institute for Marine and Atmospheric Research, Utrecht University,
Utrecht, the Netherlands
Centrum Wiskunde & Informatica,
Amsterdam, the Netherlands
Adam Candy
Civil Engineering and Geosciences, Delft Technical University, Delft, the
Netherlands
Simon Portegies Zwart
Leiden Observatory, Leiden University, Leiden,
the Netherlands
Henk Dijkstra
Institute for Marine and Atmospheric Research, Utrecht University,
Utrecht, the Netherlands
Related authors
Rolf Hut, Niels Drost, Nick van de Giesen, Ben van Werkhoven, Banafsheh Abdollahi, Jerom Aerts, Thomas Albers, Fakhereh Alidoost, Bouwe Andela, Jaro Camphuijsen, Yifat Dzigan, Ronald van Haren, Eric Hutton, Peter Kalverla, Maarten van Meersbergen, Gijs van den Oord, Inti Pelupessy, Stef Smeets, Stefan Verhoeven, Martine de Vos, and Berend Weel
Geosci. Model Dev., 15, 5371–5390, https://doi.org/10.5194/gmd-15-5371-2022, https://doi.org/10.5194/gmd-15-5371-2022, 2022
Short summary
Short summary
With the eWaterCycle platform, we are providing the hydrological community with a platform to conduct their research that is fully compatible with the principles of both open science and FAIR science. The eWatercyle platform gives easy access to well-known hydrological models, big datasets and example experiments. Using eWaterCycle hydrologists can easily compare the results from different models, couple models and do more complex hydrological computational research.
Martine G. de Vos, Wilco Hazeleger, Driss Bari, Jörg Behrens, Sofiane Bendoukha, Irene Garcia-Marti, Ronald van Haren, Sue Ellen Haupt, Rolf Hut, Fredrik Jansson, Andreas Mueller, Peter Neilley, Gijs van den Oord, Inti Pelupessy, Paolo Ruti, Martin G. Schultz, and Jeremy Walton
Geosci. Commun., 3, 191–201, https://doi.org/10.5194/gc-3-191-2020, https://doi.org/10.5194/gc-3-191-2020, 2020
Short summary
Short summary
At the 14th IEEE International eScience Conference domain specialists and data and computer scientists discussed the road towards open weather and climate science. Open science offers manifold opportunities but goes beyond sharing code and data. Besides domain-specific technical challenges, we observed that the main challenges are non-technical and impact the system of science as a whole.
Amber Adore Boot, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2023-30, https://doi.org/10.5194/esd-2023-30, 2023
Preprint under review for ESD
Short summary
Short summary
We investigate the multiple equilibria window (MEW) of the Atlantic Meridional Overturning Circulation (AMOC) within a box model. We find that increasing the total carbon content of the system widens the MEW of the AMOC. The important mechanisms at play are the balance between the source and sink of carbon and the sensitivity of the AMOC to freshwater forcing over the Atlantic Ocean. Our results suggest that changes in the marine carbon cycle can influence AMOC stability in future climates.
Julia E. Weiffenbach, Henk A. Dijkstra, Anna S. von der Heydt, Ayako Abe-Ouchi, Wing-Le Chan, Deepak Chandan, Ran Feng, Alan M. Haywood, Stephen J. Hunter, Xiangyu Li, Bette L. Otto-Bliesner, W. Richard Peltier, Christian Stepanek, Ning Tan, Julia C. Tindall, and Zhongshi Zhang
Clim. Past Discuss., https://doi.org/10.5194/cp-2023-83, https://doi.org/10.5194/cp-2023-83, 2023
Preprint under review for CP
Short summary
Short summary
Elevated atmospheric CO2 concentrations and a smaller Antarctic ice sheet during the mid-Pliocene (~3 million years ago) cause the Southern Ocean surface to become fresher and warmer, which affects the global ocean circulation. The CO2 concentration and the smaller Antarctic ice sheet both have a similar and approximately equal impact on the Southern Ocean. The conditions of the Southern Ocean in the mid-Pliocene could therefore be analogous to those in a future climate with smaller ice sheets.
René M. van Westen and Henk A. Dijkstra
EGUsphere, https://doi.org/10.5194/egusphere-2023-1502, https://doi.org/10.5194/egusphere-2023-1502, 2023
Short summary
Short summary
The Atlantic Meridional Overturning Circulation (AMOC) is an important component in the global climate system. Observations of the present-day AMOC indicate that it may weaken or collapse under global warming, with profound disruptive effects on future climate. However, AMOC weakening is not correctly represented because an important feedback is underestimated due to biases in the Atlantic's freshwater budget. Here we address these biases in several state-of-the-art climate model simulations.
Valérian Jacques-Dumas, René M. van Westen, Freddy Bouchet, and Henk A. Dijkstra
Nonlin. Processes Geophys., 30, 195–216, https://doi.org/10.5194/npg-30-195-2023, https://doi.org/10.5194/npg-30-195-2023, 2023
Short summary
Short summary
Computing the probability of occurrence of rare events is relevant because of their high impact but also difficult due to the lack of data. Rare event algorithms are designed for that task, but their efficiency relies on a score function that is hard to compute. We compare four methods that compute this function from data and measure their performance to assess which one would be best suited to be applied to a climate model. We find neural networks to be most robust and flexible for this task.
Michiel Baatsen, Peter Bijl, Anna von der Heydt, Appy Sluijs, and Henk Dijkstra
Clim. Past Discuss., https://doi.org/10.5194/cp-2023-36, https://doi.org/10.5194/cp-2023-36, 2023
Revised manuscript accepted for CP
Short summary
Short summary
This work introduces the possibility and consequences of monsoons on Antarctica in the warm Eocene climate. We suggest that such a monsoonal climate can be important to understand conditions on Antarctica prior to large-scale glaciation. We can explain seemingly contradictory indications of ice and vegetation on the continent through regional variability. In addition, we provide a new mechanism through which most of Antarctica remained ice-free through a wide range of global climatic changes.
Arthur Merlijn Oldeman, Michiel L. J. Baatsen, Anna S. von der Heydt, Aarnout J. van Delden, and Henk A. Dijkstra
EGUsphere, https://doi.org/10.5194/egusphere-2023-757, https://doi.org/10.5194/egusphere-2023-757, 2023
Short summary
Short summary
The mid-Pliocene, a geological period around 3 million years ago, is sometimes considered the best analog for near-future climate. It saw similar CO2 concentrations as the present-day, but also a slightly different geography. In this study, we use climate model simulations and find that the Northern Hemisphere winter responds very different to increased CO2 or to the mid-Pliocene geography. Our results weaken the potential of the mid-Pliocene as future analog.
Julia E. Weiffenbach, Michiel L. J. Baatsen, Henk A. Dijkstra, Anna S. von der Heydt, Ayako Abe-Ouchi, Esther C. Brady, Wing-Le Chan, Deepak Chandan, Mark A. Chandler, Camille Contoux, Ran Feng, Chuncheng Guo, Zixuan Han, Alan M. Haywood, Qiang Li, Xiangyu Li, Gerrit Lohmann, Daniel J. Lunt, Kerim H. Nisancioglu, Bette L. Otto-Bliesner, W. Richard Peltier, Gilles Ramstein, Linda E. Sohl, Christian Stepanek, Ning Tan, Julia C. Tindall, Charles J. R. Williams, Qiong Zhang, and Zhongshi Zhang
Clim. Past, 19, 61–85, https://doi.org/10.5194/cp-19-61-2023, https://doi.org/10.5194/cp-19-61-2023, 2023
Short summary
Short summary
We study the behavior of the Atlantic Meridional Overturning Circulation (AMOC) in the mid-Pliocene. The mid-Pliocene was about 3 million years ago and had a similar CO2 concentration to today. We show that the stronger AMOC during this period relates to changes in geography and that this has a significant influence on ocean temperatures and heat transported northwards by the Atlantic Ocean. Understanding the behavior of the mid-Pliocene AMOC can help us to learn more about our future climate.
Rolf Hut, Niels Drost, Nick van de Giesen, Ben van Werkhoven, Banafsheh Abdollahi, Jerom Aerts, Thomas Albers, Fakhereh Alidoost, Bouwe Andela, Jaro Camphuijsen, Yifat Dzigan, Ronald van Haren, Eric Hutton, Peter Kalverla, Maarten van Meersbergen, Gijs van den Oord, Inti Pelupessy, Stef Smeets, Stefan Verhoeven, Martine de Vos, and Berend Weel
Geosci. Model Dev., 15, 5371–5390, https://doi.org/10.5194/gmd-15-5371-2022, https://doi.org/10.5194/gmd-15-5371-2022, 2022
Short summary
Short summary
With the eWaterCycle platform, we are providing the hydrological community with a platform to conduct their research that is fully compatible with the principles of both open science and FAIR science. The eWatercyle platform gives easy access to well-known hydrological models, big datasets and example experiments. Using eWaterCycle hydrologists can easily compare the results from different models, couple models and do more complex hydrological computational research.
Amber Boot, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 13, 1041–1058, https://doi.org/10.5194/esd-13-1041-2022, https://doi.org/10.5194/esd-13-1041-2022, 2022
Short summary
Short summary
Atmospheric pCO2 of the past shows large variability on different timescales. We focus on the effect of the strength of Atlantic Meridional Overturning Circulation (AMOC) on this variability and on the AMOC–pCO2 relationship. We find that climatic boundary conditions and the representation of biology in our model are most important for this relationship. Under certain conditions, we find internal oscillations, which can be relevant for atmospheric pCO2 variability during glacial cycles.
Mikael L. A. Kaandorp, Stefanie L. Ypma, Marijke Boonstra, Henk A. Dijkstra, and Erik van Sebille
Ocean Sci., 18, 269–293, https://doi.org/10.5194/os-18-269-2022, https://doi.org/10.5194/os-18-269-2022, 2022
Short summary
Short summary
A large amount of marine litter, such as plastics, is located on or around beaches. Both the total amount of this litter and its transport are poorly understood. We investigate this by training a machine learning model with data of cleanup efforts on Dutch beaches between 2014 and 2019, obtained by about 14 000 volunteers. We find that Dutch beaches contain up to 30 000 kg of litter, largely depending on tides, oceanic transport, and how exposed the beaches are.
Peter D. Nooteboom, Peter K. Bijl, Christian Kehl, Erik van Sebille, Martin Ziegler, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 13, 357–371, https://doi.org/10.5194/esd-13-357-2022, https://doi.org/10.5194/esd-13-357-2022, 2022
Short summary
Short summary
Having descended through the water column, microplankton in ocean sediments represents the ocean surface environment and is used as an archive of past and present surface oceanographic conditions. However, this microplankton is advected by turbulent ocean currents during its sinking journey. We use simulations of sinking particles to define ocean bottom provinces and detect these provinces in datasets of sedimentary microplankton, which has implications for palaeoclimate reconstructions.
Arthur M. Oldeman, Michiel L. J. Baatsen, Anna S. von der Heydt, Henk A. Dijkstra, Julia C. Tindall, Ayako Abe-Ouchi, Alice R. Booth, Esther C. Brady, Wing-Le Chan, Deepak Chandan, Mark A. Chandler, Camille Contoux, Ran Feng, Chuncheng Guo, Alan M. Haywood, Stephen J. Hunter, Youichi Kamae, Qiang Li, Xiangyu Li, Gerrit Lohmann, Daniel J. Lunt, Kerim H. Nisancioglu, Bette L. Otto-Bliesner, W. Richard Peltier, Gabriel M. Pontes, Gilles Ramstein, Linda E. Sohl, Christian Stepanek, Ning Tan, Qiong Zhang, Zhongshi Zhang, Ilana Wainer, and Charles J. R. Williams
Clim. Past, 17, 2427–2450, https://doi.org/10.5194/cp-17-2427-2021, https://doi.org/10.5194/cp-17-2427-2021, 2021
Short summary
Short summary
In this work, we have studied the behaviour of El Niño events in the mid-Pliocene, a period of around 3 million years ago, using a collection of 17 climate models. It is an interesting period to study, as it saw similar atmospheric carbon dioxide levels to the present day. We find that the El Niño events were less strong in the mid-Pliocene simulations, when compared to pre-industrial climate. Our results could help to interpret El Niño behaviour in future climate projections.
André Jüling, Anna von der Heydt, and Henk A. Dijkstra
Ocean Sci., 17, 1251–1271, https://doi.org/10.5194/os-17-1251-2021, https://doi.org/10.5194/os-17-1251-2021, 2021
Short summary
Short summary
On top of forced changes such as human-caused global warming, unforced climate variability exists. Most multidecadal variability (MV) involves the oceans, but current climate models use non-turbulent, coarse-resolution oceans. We investigate the effect of resolving important turbulent ocean features on MV. We find that ocean heat content, ocean–atmosphere heat flux, and global mean surface temperature MV is more pronounced in the higher-resolution model relative to higher-frequency variability.
Johannes Lohmann, Daniele Castellana, Peter D. Ditlevsen, and Henk A. Dijkstra
Earth Syst. Dynam., 12, 819–835, https://doi.org/10.5194/esd-12-819-2021, https://doi.org/10.5194/esd-12-819-2021, 2021
Short summary
Short summary
Tipping of one climate subsystem could trigger a cascade of subsequent tipping points and even global-scale climate tipping. Sequential shifts of atmosphere, sea ice and ocean have been recorded in proxy archives of past climate change. Based on this we propose a conceptual model for abrupt climate changes of the last glacial. Here, rate-induced tipping enables tipping cascades in systems with relatively weak coupling. An early warning signal is proposed that may detect such a tipping.
André Jüling, Xun Zhang, Daniele Castellana, Anna S. von der Heydt, and Henk A. Dijkstra
Ocean Sci., 17, 729–754, https://doi.org/10.5194/os-17-729-2021, https://doi.org/10.5194/os-17-729-2021, 2021
Short summary
Short summary
We investigate how the freshwater budget of the Atlantic changes under climate change, which has implications for the stability of the Atlantic Meridional Overturning Circulation. We compare the effect of ocean model resolution in a climate model and find many similarities between the simulations, enhancing trust in the current generation of climate models. However, ocean biases are reduced in the strongly eddying simulation, and significant local freshwater budget differences exist.
Pascal Wang, Daniele Castellana, and Henk A. Dijkstra
Nonlin. Processes Geophys., 28, 135–151, https://doi.org/10.5194/npg-28-135-2021, https://doi.org/10.5194/npg-28-135-2021, 2021
Short summary
Short summary
This paper proposes two improvements to the use of Trajectory-Adaptive Multilevel Sampling, a rare-event algorithm which computes noise-induced transition probabilities. The first improvement uses locally linearised dynamics in order to reduce the arbitrariness associated with defining what constitutes a transition. The second improvement uses empirical transition paths accumulated at high noise in order to formulate the score function which determines the performance of the algorithm.
Amber Boot, René M. van Westen, and Henk A. Dijkstra
Ocean Sci., 17, 335–350, https://doi.org/10.5194/os-17-335-2021, https://doi.org/10.5194/os-17-335-2021, 2021
Short summary
Short summary
The Maud Rise polynya is a hole in the sea ice surrounding Antarctica that occurs during winter. It appeared in 2016 and 2017. Our study concludes that heat and salt accumulation around 1000 m depth are likely to be important for polynya formation. The heat is mixed upward to the surface where it is able to melt the sea ice and, thus, create a polynya. How often the polynya forms depends largely on the variation in the time of the heat and salt accumulation.
David Wichmann, Christian Kehl, Henk A. Dijkstra, and Erik van Sebille
Nonlin. Processes Geophys., 28, 43–59, https://doi.org/10.5194/npg-28-43-2021, https://doi.org/10.5194/npg-28-43-2021, 2021
Short summary
Short summary
Fluid parcels transported in complicated flows often contain subsets of particles that stay close over finite time intervals. We propose a new method for detecting finite-time coherent sets based on the density-based clustering technique of ordering points to identify the clustering structure (OPTICS). Unlike previous methods, our method has an intrinsic notion of coherent sets at different spatial scales. OPTICS is readily implemented in the SciPy sklearn package, making it easy to use.
Carine G. van der Boog, J. Otto Koetsier, Henk A. Dijkstra, Julie D. Pietrzak, and Caroline A. Katsman
Earth Syst. Sci. Data, 13, 43–61, https://doi.org/10.5194/essd-13-43-2021, https://doi.org/10.5194/essd-13-43-2021, 2021
Short summary
Short summary
Thermohaline staircases are stepped structures in the ocean that contain enhanced diapycnal salt and heat transport. In this study, we present a global dataset of thermohaline staircases derived from 487 493 observations of Argo profiling floats and Ice-Tethered Profilers using a novel detection algorithm.
Michiel Baatsen, Anna S. von der Heydt, Matthew Huber, Michael A. Kliphuis, Peter K. Bijl, Appy Sluijs, and Henk A. Dijkstra
Clim. Past, 16, 2573–2597, https://doi.org/10.5194/cp-16-2573-2020, https://doi.org/10.5194/cp-16-2573-2020, 2020
Short summary
Short summary
Warm climates of the deep past have proven to be challenging to reconstruct with the same numerical models used for future predictions. We present results of CESM simulations for the middle to late Eocene (∼ 38 Ma), in which we managed to match the available indications of temperature well. With these results we can now look into regional features and the response to external changes to ultimately better understand the climate when it is in such a warm state.
René M. van Westen and Henk A. Dijkstra
Ocean Sci., 16, 1443–1457, https://doi.org/10.5194/os-16-1443-2020, https://doi.org/10.5194/os-16-1443-2020, 2020
Short summary
Short summary
During the mid-1970s and quite recently in 2017, a large open-water area appeared in the Antarctic sea-ice pack, the so-called Maud Rise polynya. From several model studies, the reoccurrence time of this polynya seems arbitrary. In this study, we address the reoccurrence time of the polynya using a high-resolution climate model. We find a preferred multidecadal return time in polynya formation. The return time of the polynya is associated with a large-scale ocean mode in the Southern Ocean.
David Wichmann, Christian Kehl, Henk A. Dijkstra, and Erik van Sebille
Nonlin. Processes Geophys., 27, 501–518, https://doi.org/10.5194/npg-27-501-2020, https://doi.org/10.5194/npg-27-501-2020, 2020
Short summary
Short summary
The surface transport of heat, nutrients and plastic in the North Atlantic Ocean is organized into large-scale flow structures. We propose a new and simple method to detect such features in ocean drifter data sets by identifying groups of trajectories with similar dynamical behaviour using network theory. We successfully detect well-known regions such as the Subpolar and Subtropical gyres, the Western Boundary Current region and the Caribbean Sea.
Martine G. de Vos, Wilco Hazeleger, Driss Bari, Jörg Behrens, Sofiane Bendoukha, Irene Garcia-Marti, Ronald van Haren, Sue Ellen Haupt, Rolf Hut, Fredrik Jansson, Andreas Mueller, Peter Neilley, Gijs van den Oord, Inti Pelupessy, Paolo Ruti, Martin G. Schultz, and Jeremy Walton
Geosci. Commun., 3, 191–201, https://doi.org/10.5194/gc-3-191-2020, https://doi.org/10.5194/gc-3-191-2020, 2020
Short summary
Short summary
At the 14th IEEE International eScience Conference domain specialists and data and computer scientists discussed the road towards open weather and climate science. Open science offers manifold opportunities but goes beyond sharing code and data. Besides domain-specific technical challenges, we observed that the main challenges are non-technical and impact the system of science as a whole.
René M. van Westen and Henk A. Dijkstra
Ocean Sci. Discuss., https://doi.org/10.5194/os-2020-33, https://doi.org/10.5194/os-2020-33, 2020
Revised manuscript not accepted
Short summary
Short summary
In 2016 and 2017, an open-water area emerged within the Antarctic sea-ice pack, the so-called Maud Rise polynya. The opening of the sea ice has been linked to intense winter storms. In this study, we investigate another important contributor to polynya formation by analysing subsurface static instabilities. These static instabilities initiate subsurface convection near Maud Rise. We conclude that apart from winter storms, subsurface convection plays an important role in polynya formation.
Ann Kristin Klose, René M. van Westen, and Henk A. Dijkstra
Ocean Sci., 16, 435–449, https://doi.org/10.5194/os-16-435-2020, https://doi.org/10.5194/os-16-435-2020, 2020
Short summary
Short summary
We give an explanation of the decadal timescale path variations in the Kuroshio Current in the North Pacific based on highly detailed climate
model simulations.
Carine G. van der Boog, Julie D. Pietrzak, Henk A. Dijkstra, Nils Brüggemann, René M. van Westen, Rebecca K. James, Tjeerd J. Bouma, Riccardo E. M. Riva, D. Cornelis Slobbe, Roland Klees, Marcel Zijlema, and Caroline A. Katsman
Ocean Sci., 15, 1419–1437, https://doi.org/10.5194/os-15-1419-2019, https://doi.org/10.5194/os-15-1419-2019, 2019
Short summary
Short summary
We use a model of the Caribbean Sea to study how coastal upwelling along Venezuela impacts the evolution of energetic anticyclonic eddies. We show that the anticyclones grow by the advection of the cold upwelling filaments. These filaments increase the density gradient and vertical shear of the anticyclones. Furthermore, we show that stronger upwelling results in stronger eddies, while model simulations with weaker upwelling contain weaker eddies.
Henk A. Dijkstra
Nonlin. Processes Geophys., 26, 359–369, https://doi.org/10.5194/npg-26-359-2019, https://doi.org/10.5194/npg-26-359-2019, 2019
Short summary
Short summary
I provide a personal view on the role of bifurcation analysis of climate models in the development of a theory of variability in the climate system. By outlining the state of the art of the methodology and by discussing what has been done and what has been learned from a hierarchy of models, I will argue that there are low-order phenomena of climate variability, such as El Niño and the Atlantic Multidecadal Oscillation.
Juan-Manuel Sayol, Henk Dijkstra, and Caroline Katsman
Ocean Sci., 15, 1033–1053, https://doi.org/10.5194/os-15-1033-2019, https://doi.org/10.5194/os-15-1033-2019, 2019
Short summary
Short summary
This work uses high-resolution ocean model data to quantify the sinking of waters in the subpolar North Atlantic. The largest amount of sinking is found at the depth of maximum AMOC at 45° N below the mixed layer depth, and 90 % of the sinking occurs near the boundaries in the first 250 km off the shelf. The characteristics of the sinking (total amount, seasonal variability, and vertical structure) vary largely according to the region considered, revealing a complex picture for the sinking.
Koen G. Helwegen, Claudia E. Wieners, Jason E. Frank, and Henk A. Dijkstra
Earth Syst. Dynam., 10, 453–472, https://doi.org/10.5194/esd-10-453-2019, https://doi.org/10.5194/esd-10-453-2019, 2019
Short summary
Short summary
We use the climate-economy model DICE to perform a cost–benefit analysis of sulfate geoengineering, i.e. producing a thin artificial sulfate haze in the higher atmosphere to reflect some sunlight and cool the Earth.
We find that geoengineering can increase future welfare by reducing global warming, and should be taken seriously as a policy option, but it can only complement, not replace, carbon emission reduction. The best policy is to combine CO2 emission reduction with modest geoengineering.
Martijn Westhoff, Axel Kleidon, Stan Schymanski, Benjamin Dewals, Femke Nijsse, Maik Renner, Henk Dijkstra, Hisashi Ozawa, Hubert Savenije, Han Dolman, Antoon Meesters, and Erwin Zehe
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2019-6, https://doi.org/10.5194/esd-2019-6, 2019
Publication in ESD not foreseen
Short summary
Short summary
Even models relying on physical laws have parameters that need to be measured or estimated. Thermodynamic optimality principles potentially offer a way to reduce the number of estimated parameters by stating that a system evolves to an optimum state. These principles have been applied successfully within the Earth system, but it is often unclear what to optimize and how. In this review paper we identify commonalities between different successful applications as well as some doubtful applications.
Mark M. Dekker, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 9, 1243–1260, https://doi.org/10.5194/esd-9-1243-2018, https://doi.org/10.5194/esd-9-1243-2018, 2018
Short summary
Short summary
We introduce a framework of cascading tipping, i.e. a sequence of abrupt transitions occurring because a transition in one system affects the background conditions of another system. Using bifurcation theory, various types of these events are considered and early warning indicators are suggested. An illustration of such an event is found in a conceptual model, coupling the North Atlantic Ocean with the equatorial Pacific. This demonstrates the possibility of events such as this in nature.
Matthias Aengenheyster, Qing Yi Feng, Frederick van der Ploeg, and Henk A. Dijkstra
Earth Syst. Dynam., 9, 1085–1095, https://doi.org/10.5194/esd-9-1085-2018, https://doi.org/10.5194/esd-9-1085-2018, 2018
Short summary
Short summary
We determine the point of no return (PNR) for climate change, which is the latest year to take action to reduce greenhouse gases to stay, with a certain probability, within thresholds set by the Paris Agreement. For a 67 % probability and a 2 K threshold, the PNR is the year 2035 when the share of renewable energy rises by 2 % per year. We show the impact on the PNR of the speed by which emissions are cut, the risk tolerance, climate uncertainties and the potential for negative emissions.
Femke J. M. M. Nijsse and Henk A. Dijkstra
Earth Syst. Dynam., 9, 999–1012, https://doi.org/10.5194/esd-9-999-2018, https://doi.org/10.5194/esd-9-999-2018, 2018
Short summary
Short summary
State-of-the-art climate models sometimes differ in their prediction of key aspects of climate change. The technique of
emergent constraintsuses observations of current climate to improve those predictions, using relationships between different climate models. Our paper first classifies the different uses of the technique, and continues with proposing a mathematical justification for their use. We also highlight when the application of emergent constraints might give biased predictions.
Peter D. Nooteboom, Qing Yi Feng, Cristóbal López, Emilio Hernández-García, and Henk A. Dijkstra
Earth Syst. Dynam., 9, 969–983, https://doi.org/10.5194/esd-9-969-2018, https://doi.org/10.5194/esd-9-969-2018, 2018
Short summary
Short summary
The prediction of the El Niño phenomenon, an increased sea surface temperature in the eastern Pacific, fascinates people for a long time. El Niño is associated with natural disasters, such as droughts and floods. Current methods can make a reliable prediction of this phenomenon up to 6 months ahead. However, this article presents a method which combines network theory and machine learning which predicts El Niño up to 1 year ahead.
Michiel Baatsen, Anna S. von der Heydt, Matthew Huber, Michael A. Kliphuis, Peter K. Bijl, Appy Sluijs, and Henk A. Dijkstra
Clim. Past Discuss., https://doi.org/10.5194/cp-2018-43, https://doi.org/10.5194/cp-2018-43, 2018
Revised manuscript not accepted
Short summary
Short summary
The Eocene marks a period where the climate was in a hothouse state, without any continental-scale ice sheets. Such climates have proven difficult to reproduce in models, especially their low temperature difference between equator and poles. Here, we present high resolution CESM simulations using a new geographic reconstruction of the middle-to-late Eocene. The results provide new insights into a period for which knowledge is limited, leading up to a transition into the present icehouse state.
Adam S. Candy and Julie D. Pietrzak
Geosci. Model Dev., 11, 213–234, https://doi.org/10.5194/gmd-11-213-2018, https://doi.org/10.5194/gmd-11-213-2018, 2018
Short summary
Short summary
Shingle is a new approach to describing and generating spatial mesh discretisations for multi-scale geophysical domains. Its novel use of an extendable, hierarchical formal grammar and natural language basis for geophysical features achieves robust reproduction and enables consistent comparison between models. This is designed to support the increase in complexity as models include a greater range of spatial scales and future-proof simulation set-up.
Brenda C. van Zalinge, Qing Yi Feng, Matthias Aengenheyster, and Henk A. Dijkstra
Earth Syst. Dynam., 8, 707–717, https://doi.org/10.5194/esd-8-707-2017, https://doi.org/10.5194/esd-8-707-2017, 2017
Short summary
Short summary
The increase in atmospheric greenhouse gases (GHGs) is one of the main causes for the increase in global mean surface temperature. There is no good quantitative measure to determine when it is
too lateto start reducing GHGs in order to avoid dangerous anthropogenic interference. We develop a method for determining a so-called point of no return (PNR) for several GHG emission scenarios. The innovative element in this approach is the applicability to high-dimensional climate models.
Daniel J. Lunt, Matthew Huber, Eleni Anagnostou, Michiel L. J. Baatsen, Rodrigo Caballero, Rob DeConto, Henk A. Dijkstra, Yannick Donnadieu, David Evans, Ran Feng, Gavin L. Foster, Ed Gasson, Anna S. von der Heydt, Chris J. Hollis, Gordon N. Inglis, Stephen M. Jones, Jeff Kiehl, Sandy Kirtland Turner, Robert L. Korty, Reinhardt Kozdon, Srinath Krishnan, Jean-Baptiste Ladant, Petra Langebroek, Caroline H. Lear, Allegra N. LeGrande, Kate Littler, Paul Markwick, Bette Otto-Bliesner, Paul Pearson, Christopher J. Poulsen, Ulrich Salzmann, Christine Shields, Kathryn Snell, Michael Stärz, James Super, Clay Tabor, Jessica E. Tierney, Gregory J. L. Tourte, Aradhna Tripati, Garland R. Upchurch, Bridget S. Wade, Scott L. Wing, Arne M. E. Winguth, Nicky M. Wright, James C. Zachos, and Richard E. Zeebe
Geosci. Model Dev., 10, 889–901, https://doi.org/10.5194/gmd-10-889-2017, https://doi.org/10.5194/gmd-10-889-2017, 2017
Short summary
Short summary
In this paper we describe the experimental design for a set of simulations which will be carried out by a range of climate models, all investigating the climate of the Eocene, about 50 million years ago. The intercomparison of model results is called 'DeepMIP', and we anticipate that we will contribute to the next IPCC report through an analysis of these simulations and the geological data to which we will compare them.
S.-E. Brunnabend, H. A. Dijkstra, M. A. Kliphuis, H. E. Bal, F. Seinstra, B. van Werkhoven, J. Maassen, and M. van Meersbergen
Ocean Sci., 13, 47–60, https://doi.org/10.5194/os-13-47-2017, https://doi.org/10.5194/os-13-47-2017, 2017
Short summary
Short summary
An important contribution to future changes in regional sea level extremes is due to the changes in intrinsic ocean variability, in particular ocean eddies. Here, we study a scenario of future dynamic sea level (DSL) extremes using a strongly eddying version of the Parallel Ocean Program. Changes in 10-year return time DSL extremes are very inhomogeneous over the globe and are related to changes in ocean currents and corresponding regional shifts in ocean eddy pathways.
Michiel Baatsen, Douwe J. J. van Hinsbergen, Anna S. von der Heydt, Henk A. Dijkstra, Appy Sluijs, Hemmo A. Abels, and Peter K. Bijl
Clim. Past, 12, 1635–1644, https://doi.org/10.5194/cp-12-1635-2016, https://doi.org/10.5194/cp-12-1635-2016, 2016
Short summary
Short summary
One of the major difficulties in modelling palaeoclimate is constricting the boundary conditions, causing significant discrepancies between different studies. Here, a new method is presented to automate much of the process of generating the necessary geographical reconstructions. The latter can be made using various rotational frameworks and topography/bathymetry input, allowing for easy inter-comparisons and the incorporation of the latest insights from geoscientific research.
Zun Yin, Stefan C. Dekker, Bart J. J. M. van den Hurk, and Henk A. Dijkstra
Biogeosciences, 13, 3343–3357, https://doi.org/10.5194/bg-13-3343-2016, https://doi.org/10.5194/bg-13-3343-2016, 2016
Short summary
Short summary
Bimodality is found in aboveground biomass and mean annual shortwave radiation in West Africa, which is a strong evidence of alternative stable states. The condition with low biomass and low radiation is demonstrated under which ecosystem state can shift between savanna and forest states. Moreover, climatic indicators have different prediction confidences to different land cover types. A new method is proposed to predict potential land cover change with a combination of climatic indicators.
Qing Yi Feng, Ruggero Vasile, Marc Segond, Avi Gozolchiani, Yang Wang, Markus Abel, Shilomo Havlin, Armin Bunde, and Henk A. Dijkstra
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2015-273, https://doi.org/10.5194/gmd-2015-273, 2016
Revised manuscript not accepted
Short summary
Short summary
We present the toolbox ClimateLearn to tackle problems in climate prediction using machine learning techniques and climate network analysis. Because spatial temporal information on climate variability can be efficiently represented by complex network measures, such data are considered here as input to the machine-learning algorithms. As an example, the toolbox is applied to the prediction of the occurrence and the development of El Niño in the equatorial Pacific.
H. Ihshaish, A. Tantet, J. C. M. Dijkzeul, and H. A. Dijkstra
Geosci. Model Dev., 8, 3321–3331, https://doi.org/10.5194/gmd-8-3321-2015, https://doi.org/10.5194/gmd-8-3321-2015, 2015
Short summary
Short summary
Par@Graph, a software toolbox to reconstruct and analyze large-scale complex climate networks. It exposes parallelism on distributed-memory computing platforms to enable the construction of massive networks from large number of time series based on the calculation of common statistical similarity measures between them. Providing additionally parallel graph algorithms to enable fast calculation of important and common properties of the generated networks on SMP machines.
L. Hahn-Woernle, H. A. Dijkstra, and H. J. Van der Woerd
Ocean Sci., 10, 993–1011, https://doi.org/10.5194/os-10-993-2014, https://doi.org/10.5194/os-10-993-2014, 2014
Short summary
Short summary
Measured vertical mixing profiles are applied to a 1-D phytoplankton model. Results show that shifts in vertical mixing are able to induce a transition from an upper chlorophyll maximum to a deep one and vice versa. Furthermore, a clear correlation between the surface phytoplankton concentration and mixing-induced nutrient flux is found for nutrient-limited cases. This result suggests that characteristics of the vertical mixing could be determined from the surface phytoplankton concentration.
S.-E. Brunnabend, H. A. Dijkstra, M. A. Kliphuis, B. van Werkhoven, H. E. Bal, F. Seinstra, J. Maassen, and M. van Meersbergen
Ocean Sci., 10, 881–891, https://doi.org/10.5194/os-10-881-2014, https://doi.org/10.5194/os-10-881-2014, 2014
Short summary
Short summary
Regional sea surface height (SSH) changes due to an abrupt weakening of the Atlantic meridional overturning circulation (AMOC) are simulated with a high- and low-resolution model. A rapid decrease of the AMOC in the high-resolution version induces shorter return times of several specific regional and coastal extremes in North Atlantic SSH than in the low-resolution version. This effect is caused by a change in main eddy pathways associated with a change in separation latitude of the Gulf Stream.
A. S. Candy, A. Avdis, J. Hill, G. J. Gorman, and M. D. Piggott
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmdd-7-5993-2014, https://doi.org/10.5194/gmdd-7-5993-2014, 2014
Revised manuscript has not been submitted
Z. Yin, S. C. Dekker, B. J. J. M. van den Hurk, and H. A. Dijkstra
Earth Syst. Dynam., 5, 257–270, https://doi.org/10.5194/esd-5-257-2014, https://doi.org/10.5194/esd-5-257-2014, 2014
D. Le Bars, J. V. Durgadoo, H. A. Dijkstra, A. Biastoch, and W. P. M. De Ruijter
Ocean Sci., 10, 601–609, https://doi.org/10.5194/os-10-601-2014, https://doi.org/10.5194/os-10-601-2014, 2014
Z. Yin, S. C. Dekker, B. J. J. M. van den Hurk, and H. A. Dijkstra
Geosci. Model Dev., 7, 821–845, https://doi.org/10.5194/gmd-7-821-2014, https://doi.org/10.5194/gmd-7-821-2014, 2014
G. Sgubin, S. Pierini, and H. A. Dijkstra
Ocean Sci., 10, 201–213, https://doi.org/10.5194/os-10-201-2014, https://doi.org/10.5194/os-10-201-2014, 2014
B. van Werkhoven, J. Maassen, M. Kliphuis, H. A. Dijkstra, S. E. Brunnabend, M. van Meersbergen, F. J. Seinstra, and H. E. Bal
Geosci. Model Dev., 7, 267–281, https://doi.org/10.5194/gmd-7-267-2014, https://doi.org/10.5194/gmd-7-267-2014, 2014
A. Tantet and H. A. Dijkstra
Earth Syst. Dynam., 5, 1–14, https://doi.org/10.5194/esd-5-1-2014, https://doi.org/10.5194/esd-5-1-2014, 2014
A. A. Cimatoribus, S. Drijfhout, and H. A. Dijkstra
Ocean Sci. Discuss., https://doi.org/10.5194/osd-10-2461-2013, https://doi.org/10.5194/osd-10-2461-2013, 2013
Preprint withdrawn
A. S. von der Heydt, A. Nnafie, and H. A. Dijkstra
Clim. Past, 7, 903–915, https://doi.org/10.5194/cp-7-903-2011, https://doi.org/10.5194/cp-7-903-2011, 2011
M. Tigchelaar, A. S. von der Heydt, and H. A. Dijkstra
Clim. Past, 7, 235–247, https://doi.org/10.5194/cp-7-235-2011, https://doi.org/10.5194/cp-7-235-2011, 2011
J. O. Sewall, R. S. W. van de Wal, K. van der Zwan, C. van Oosterhout, H. A. Dijkstra, and C. R. Scotese
Clim. Past, 3, 647–657, https://doi.org/10.5194/cp-3-647-2007, https://doi.org/10.5194/cp-3-647-2007, 2007
Related subject area
Oceanography
A high-resolution physical–biogeochemical model for marine resource applications in the northwest Atlantic (MOM6-COBALT-NWA12 v1.0)
A flexible z-layers approach for the accurate representation of free surface flows in a coastal ocean model (SHYFEM v. 7_5_71)
Implementation and assessment of a model including mixotrophs and the carbonate cycle (Eco3M_MIX-CarbOx v1.0) in a highly dynamic Mediterranean coastal environment (Bay of Marseille, France) – Part 1: Evolution of ecosystem composition under limited light and nutrient conditions
Ocean wave tracing v.1: a numerical solver of the wave ray equations for ocean waves on variable currents at arbitrary depths
Design and evaluation of an efficient high-precision ocean surface wave model with a multiscale grid system (MSG_Wav1.0)
Evaluation of the CMCC global eddying ocean model for the Ocean Model Intercomparison Project (OMIP2)
Barents-2.5km v2.0: an operational data-assimilative coupled ocean and sea ice ensemble prediction model for the Barents Sea and Svalbard
Open-ocean tides simulated by ICON-O, version icon-2.6.6
Using Probability Density Functions to Evaluate Models (PDFEM, v1.0) to compare a biogeochemical model with satellite-derived chlorophyll
Data assimilation sensitivity experiments in the East Auckland Current system using 4D-Var
Using the COAsT Python package to develop a standardised validation workflow for ocean physics models
Improving Antarctic Bottom Water precursors in NEMO for climate applications
Formulation, optimization, and sensitivity of NitrOMZv1.0, a biogeochemical model of the nitrogen cycle in oceanic oxygen minimum zones
Impact of high resolution on Arctic Ocean simulations in Ocean Model Intercomparison Project phase 2 (OMIP-2)
Waves in SKRIPS: WAVEWATCH III coupling implementation and a case study of Tropical Cyclone Mekunu
Adding sea ice effects to a global operational model (NEMO v3.6) for forecasting total water level: approach and impact
Enhanced ocean wave modeling by including effect of breaking under both deep- and shallow-water conditions
An internal solitary wave forecasting model in the northern South China Sea (ISWFM-NSCS)
The 3D biogeochemical marine mercury cycling model MERCY v2.0 – linking atmospheric Hg to methylmercury in fish
Global seamless tidal simulation using a 3D unstructured-grid model (SCHISM v5.10.0)
Arctic Ocean simulations in the CMIP6 Ocean Model Intercomparison Project (OMIP)
ChemicalDrift 1.0: an open-source Lagrangian chemical-fate and transport model for organic aquatic pollutants
The Met Office operational wave forecasting system: the evolution of the regional and global models
4DVarNet-SSH: end-to-end learning of variational interpolation schemes for nadir and wide-swath satellite altimetry
Development and validation of a global 1∕32° surface-wave–tide–circulation coupled ocean model: FIO-COM32
Reproducible and relocatable regional ocean modelling: fundamentals and practices
Barotropic tides in MPAS-Ocean (E3SM V2): impact of ice shelf cavities
Using the two-way nesting technique AGRIF with MARS3D V11.2 to improve hydrodynamics and estimate environmental indicators
Multidecadal and climatological surface current simulations for the southwestern Indian Ocean at 1∕50° resolution
The tidal effects in the Finite-volumE Sea ice–Ocean Model (FESOM2.1): a comparison between parameterised tidal mixing and explicit tidal forcing
HIDRA2: deep-learning ensemble sea level and storm tide forecasting in the presence of seiches – the case of the northern Adriatic
Moana Ocean Hindcast – a > 25-year simulation for New Zealand waters using the Regional Ocean Modeling System (ROMS) v3.9 model
A nonhydrostatic oceanic regional model, ORCTM v1, for internal solitary wave simulation
How does 4DVar data assimilation affect the vertical representation of mesoscale eddies? A case study with observing system simulation experiments (OSSEs) using ROMS v3.9
An ensemble Kalman filter-based ocean data assimilation system improved by adaptive observation error inflation (AOEI)
GULF18, a high-resolution NEMO-based tidal ocean model of the Arabian/Persian Gulf
The Baltic Sea Model Intercomparison Project (BMIP) – a platform for model development, evaluation, and uncertainty assessment
An ensemble Kalman filter system with the Stony Brook Parallel Ocean Model v1.0
Wind work at the air-sea interface: a modeling study in anticipation of future space missions
Improved upper-ocean thermodynamical structure modeling with combined effects of surface waves and M2 internal tides on vertical mixing: a case study for the Indian Ocean
The bulk parameterizations of turbulent air–sea fluxes in NEMO4: the origin of sea surface temperature differences in a global model study
NeverWorld2: an idealized model hierarchy to investigate ocean mesoscale eddies across resolutions
Observing system simulation experiments reveal that subsurface temperature observations improve estimates of circulation and heat content in a dynamic western boundary current
Parallel implementation of the SHYFEM (System of HydrodYnamic Finite Element Modules) model
Block-structured, equal-workload, multi-grid-nesting interface for the Boussinesq wave model FUNWAVE-TVD (Total Variation Diminishing)
Evaluation of an emergent feature of sub-shelf melt oscillations from an idealized coupled ice sheet–ocean model using FISOC (v1.1) – ROMSIceShelf (v1.0) – Elmer/Ice (v9.0)
GNOM v1.0: an optimized steady-state model of the modern marine neodymium cycle
Implementation and evaluation of open boundary conditions for sea ice in a regional coupled ocean (ROMS) and sea ice (CICE) modeling system
ROMSPath v1.0: offline particle tracking for the Regional Ocean Modeling System (ROMS)
DINCAE 2.0: multivariate convolutional neural network with error estimates to reconstruct sea surface temperature satellite and altimetry observations
Andrew C. Ross, Charles A. Stock, Alistair Adcroft, Enrique Curchitser, Robert Hallberg, Matthew J. Harrison, Katherine Hedstrom, Niki Zadeh, Michael Alexander, Wenhao Chen, Elizabeth J. Drenkard, Hubert du Pontavice, Raphael Dussin, Fabian Gomez, Jasmin G. John, Dujuan Kang, Diane Lavoie, Laure Resplandy, Alizée Roobaert, Vincent Saba, Sang-Ik Shin, Samantha Siedlecki, and James Simkins
Geosci. Model Dev., 16, 6943–6985, https://doi.org/10.5194/gmd-16-6943-2023, https://doi.org/10.5194/gmd-16-6943-2023, 2023
Short summary
Short summary
We evaluate a model for northwest Atlantic Ocean dynamics and biogeochemistry that balances high resolution with computational economy by building on the new regional features in the MOM6 ocean model and COBALT biogeochemical model. We test the model's ability to simulate impactful historical variability and find that the model simulates the mean state and variability of most features well, which suggests the model can provide information to inform living-marine-resource applications.
Luca Arpaia, Christian Ferrarin, Marco Bajo, and Georg Umgiesser
Geosci. Model Dev., 16, 6899–6919, https://doi.org/10.5194/gmd-16-6899-2023, https://doi.org/10.5194/gmd-16-6899-2023, 2023
Short summary
Short summary
We propose a discrete multilayer shallow water model based on z-layers which, thanks to the insertion and removal of surface layers, can deal with an arbitrarily large tidal oscillation independently of the vertical resolution. The algorithm is based on a two-step procedure used in numerical simulations with moving boundaries (grid movement followed by a grid topology change, that is, the insertion/removal of surface layers), which avoids the appearance of very thin surface layers.
Lucille Barré, Frédéric Diaz, Thibaut Wagener, France Van Wambeke, Camille Mazoyer, Christophe Yohia, and Christel Pinazo
Geosci. Model Dev., 16, 6701–6739, https://doi.org/10.5194/gmd-16-6701-2023, https://doi.org/10.5194/gmd-16-6701-2023, 2023
Short summary
Short summary
While several studies have shown that mixotrophs play a crucial role in the carbon cycle, the impact of environmental forcings on their dynamics remains poorly investigated. Using a biogeochemical model that considers mixotrophs, we study the impact of light and nutrient concentration on the ecosystem composition in a highly dynamic Mediterranean coastal area: the Bay of Marseille. We show that mixotrophs cope better with oligotrophic conditions compared to strict auto- and heterotrophs.
Trygve Halsne, Kai Håkon Christensen, Gaute Hope, and Øyvind Breivik
Geosci. Model Dev., 16, 6515–6530, https://doi.org/10.5194/gmd-16-6515-2023, https://doi.org/10.5194/gmd-16-6515-2023, 2023
Short summary
Short summary
Surface waves that propagate in oceanic or coastal environments get influenced by their surroundings. Changes in the ambient current or the depth profile affect the wave propagation path, and the change in wave direction is called refraction. Some analytical solutions to the governing equations exist under ideal conditions, but for realistic situations, the equations must be solved numerically. Here we present such a numerical solver under an open-source license.
Jiangyu Li, Shaoqing Zhang, Qingxiang Liu, Xiaolin Yu, and Zhiwei Zhang
Geosci. Model Dev., 16, 6393–6412, https://doi.org/10.5194/gmd-16-6393-2023, https://doi.org/10.5194/gmd-16-6393-2023, 2023
Short summary
Short summary
Ocean surface waves play an important role in the air–sea interface but are rarely activated in high-resolution Earth system simulations due to their expensive computational costs. To alleviate this situation, this paper designs a new wave modeling framework with a multiscale grid system. Evaluations of a series of numerical experiments show that it has good feasibility and applicability in the WAVEWATCH III model, WW3, and can achieve the goals of efficient and high-precision wave simulation.
Doroteaciro Iovino, Pier Giuseppe Fogli, and Simona Masina
Geosci. Model Dev., 16, 6127–6159, https://doi.org/10.5194/gmd-16-6127-2023, https://doi.org/10.5194/gmd-16-6127-2023, 2023
Short summary
Short summary
This paper describes the model performance of three global ocean–sea ice configurations, from non-eddying (1°) to eddy-rich (1/16°) resolutions. Model simulations are obtained following the Ocean Model Intercomparison Project phase 2 (OMIP2) protocol. We compare key global climate variables across the three models and against observations, emphasizing the relative advantages and disadvantages of running forced ocean–sea ice models at higher resolution.
Johannes Röhrs, Yvonne Gusdal, Edel S. U. Rikardsen, Marina Durán Moro, Jostein Brændshøi, Nils Melsom Kristensen, Sindre Fritzner, Keguang Wang, Ann Kristin Sperrevik, Martina Idžanović, Thomas Lavergne, Jens Boldingh Debernard, and Kai H. Christensen
Geosci. Model Dev., 16, 5401–5426, https://doi.org/10.5194/gmd-16-5401-2023, https://doi.org/10.5194/gmd-16-5401-2023, 2023
Short summary
Short summary
A model to predict ocean currents, temperature, and sea ice is presented, covering the Barents Sea and northern Norway. To quantify forecast uncertainties, the model calculates ensemble forecasts with 24 realizations of ocean and ice conditions. Observations from satellites, buoys, and ships are ingested by the model. The model forecasts are compared with observations, and we show that the ocean model has skill in predicting sea surface temperatures.
Jin-Song von Storch, Eileen Hertwig, Veit Lüschow, Nils Brüggemann, Helmuth Haak, Peter Korn, and Vikram Singh
Geosci. Model Dev., 16, 5179–5196, https://doi.org/10.5194/gmd-16-5179-2023, https://doi.org/10.5194/gmd-16-5179-2023, 2023
Short summary
Short summary
The new ocean general circulation model ICON-O is developed for running experiments at kilometer scales and beyond. One targeted application is to simulate internal tides crucial for ocean mixing. To ensure their realism, which is difficult to assess, we evaluate the barotropic tides that generate internal tides. We show that ICON-O is able to realistically simulate the major aspects of the observed barotropic tides and discuss the aspects that impact the quality of the simulated tides.
Bror F. Jönsson, Christopher L. Follett, Jacob Bien, Stephanie Dutkiewicz, Sangwon Hyun, Gemma Kulk, Gael L. Forget, Christian Müller, Marie-Fanny Racault, Christopher N. Hill, Thomas Jackson, and Shubha Sathyendranath
Geosci. Model Dev., 16, 4639–4657, https://doi.org/10.5194/gmd-16-4639-2023, https://doi.org/10.5194/gmd-16-4639-2023, 2023
Short summary
Short summary
While biogeochemical models and satellite-derived ocean color data provide unprecedented information, it is problematic to compare them. Here, we present a new approach based on comparing probability density distributions of model and satellite properties to assess model skills. We also introduce Earth mover's distances as a novel and powerful metric to quantify the misfit between models and observations. We find that how 3D chlorophyll fields are aggregated can be a significant source of error.
Rafael Santana, Helen Macdonald, Joanne O'Callaghan, Brian Powell, Sarah Wakes, and Sutara H. Suanda
Geosci. Model Dev., 16, 3675–3698, https://doi.org/10.5194/gmd-16-3675-2023, https://doi.org/10.5194/gmd-16-3675-2023, 2023
Short summary
Short summary
We show the importance of assimilating subsurface temperature and velocity data in a model of the East Auckland Current. Assimilation of velocity increased the representation of large oceanic vortexes. Assimilation of temperature is needed to correctly simulate temperatures around 100 m depth, which is the most difficult region to simulate in ocean models. Our simulations showed improved results in comparison to the US Navy global model and highlight the importance of regional models.
David Byrne, Jeff Polton, Enda O'Dea, and Joanne Williams
Geosci. Model Dev., 16, 3749–3764, https://doi.org/10.5194/gmd-16-3749-2023, https://doi.org/10.5194/gmd-16-3749-2023, 2023
Short summary
Short summary
Validation is a crucial step during the development of models for ocean simulation. The purpose of validation is to assess how accurate a model is. It is most commonly done by comparing output from a model to actual observations. In this paper, we introduce and demonstrate usage of the COAsT Python package to standardise the validation process for physical ocean models. We also discuss our five guiding principles for standardised validation.
Katherine Hutchinson, Julie Deshayes, Christian Éthé, Clément Rousset, Casimir de Lavergne, Martin Vancoppenolle, Nicolas C. Jourdain, and Pierre Mathiot
Geosci. Model Dev., 16, 3629–3650, https://doi.org/10.5194/gmd-16-3629-2023, https://doi.org/10.5194/gmd-16-3629-2023, 2023
Short summary
Short summary
Bottom Water constitutes the lower half of the ocean’s overturning system and is primarily formed in the Weddell and Ross Sea in the Antarctic due to interactions between the atmosphere, ocean, sea ice and ice shelves. Here we use a global ocean 1° resolution model with explicit representation of the three large ice shelves important for the formation of the parent waters of Bottom Water. We find doing so reduces salt biases, improves water mass realism and gives realistic ice shelf melt rates.
Daniele Bianchi, Daniel McCoy, and Simon Yang
Geosci. Model Dev., 16, 3581–3609, https://doi.org/10.5194/gmd-16-3581-2023, https://doi.org/10.5194/gmd-16-3581-2023, 2023
Short summary
Short summary
We present NitrOMZ, a new model of the oceanic nitrogen cycle that simulates chemical transformations within oxygen minimum zones (OMZs). We describe the model formulation and its implementation in a one-dimensional representation of the water column before evaluating its ability to reproduce observations in the eastern tropical South Pacific. We conclude by describing the model sensitivity to parameter choices and environmental factors and its application to nitrogen cycling in the ocean.
Qiang Wang, Qi Shu, Alexandra Bozec, Eric P. Chassignet, Pier Giuseppe Fogli, Baylor Fox-Kemper, Andy McC. Hogg, Doroteaciro Iovino, Andrew E. Kiss, Nikolay Koldunov, Julien Le Sommer, Yiwen Li, Pengfei Lin, Hailong Liu, Igor Polyakov, Patrick Scholz, Dmitry Sidorenko, Shizhu Wang, and Xiaobiao Xu
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-123, https://doi.org/10.5194/gmd-2023-123, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
High resolution improves model skills in simulating the Arctic Ocean, but other factors such as parameterizations and numerics are at least the same important for obtaining faithful simulations.
Rui Sun, Alison Cobb, Ana B. Villas Bôas, Sabique Langodan, Aneesh C. Subramanian, Matthew R. Mazloff, Bruce D. Cornuelle, Arthur J. Miller, Raju Pathak, and Ibrahim Hoteit
Geosci. Model Dev., 16, 3435–3458, https://doi.org/10.5194/gmd-16-3435-2023, https://doi.org/10.5194/gmd-16-3435-2023, 2023
Short summary
Short summary
In this work, we integrated the WAVEWATCH III model into the regional coupled model SKRIPS. We then performed a case study using the newly implemented model to study Tropical Cyclone Mekunu, which occurred in the Arabian Sea. We found that the coupled model better simulates the cyclone than the uncoupled model, but the impact of waves on the cyclone is not significant. However, the waves change the sea surface temperature and mixed layer, especially in the cold waves produced due to the cyclone.
Pengcheng Wang and Natacha B. Bernier
Geosci. Model Dev., 16, 3335–3354, https://doi.org/10.5194/gmd-16-3335-2023, https://doi.org/10.5194/gmd-16-3335-2023, 2023
Short summary
Short summary
Effects of sea ice are typically neglected in operational flood forecast systems. In this work, we capture these effects via the addition of a parameterized ice–ocean stress. The parameterization takes advantage of forecast fields from an advanced ice–ocean model and features a novel, consistent representation of the tidal relative ice–ocean velocity. The new parameterization leads to improved forecasts of tides and storm surges in polar regions. Associated physical processes are discussed.
Yue Xu and Xiping Yu
Geosci. Model Dev., 16, 2811–2831, https://doi.org/10.5194/gmd-16-2811-2023, https://doi.org/10.5194/gmd-16-2811-2023, 2023
Short summary
Short summary
An accurate description of the wind energy input into ocean waves is crucial to ocean wave modeling, and a physics-based consideration of the effect of wave breaking is absolutely necessary to obtain such an accurate description, particularly under extreme conditions. This study evaluates the performance of a recently improved formula, taking into account not only the effect of breaking but also the effect of airflow separation on the leeside of steep wave crests in a reasonably consistent way.
Yankun Gong, Xueen Chen, Jiexin Xu, Jieshuo Xie, Zhiwu Chen, Yinghui He, and Shuqun Cai
Geosci. Model Dev., 16, 2851–2871, https://doi.org/10.5194/gmd-16-2851-2023, https://doi.org/10.5194/gmd-16-2851-2023, 2023
Short summary
Short summary
Internal solitary waves (ISWs) play crucial roles in mass transport and ocean mixing in the northern South China Sea. Massive numerical investigations have been conducted in this region, but there was no systematic evaluation of a three-dimensional model about precisely simulating ISWs. Here, an ISW forecasting model is employed to evaluate the roles of resolution, tidal forcing and stratification in accurately reproducing wave properties via comparison to field and remote-sensing observations.
Johannes Bieser, David J. Amptmeijer, Ute Daewel, Joachim Kuss, Anne L. Soerensen, and Corinna Schrum
Geosci. Model Dev., 16, 2649–2688, https://doi.org/10.5194/gmd-16-2649-2023, https://doi.org/10.5194/gmd-16-2649-2023, 2023
Short summary
Short summary
MERCY is a 3D model to study mercury (Hg) cycling in the ocean. Hg is a highly harmful pollutant regulated by the UN Minamata Convention on Mercury due to widespread human emissions. These emissions eventually reach the oceans, where Hg transforms into the even more toxic and bioaccumulative pollutant methylmercury. MERCY predicts the fate of Hg in the ocean and its buildup in the food chain. It is the first model to consider Hg accumulation in fish, a major source of Hg exposure for humans.
Y. Joseph Zhang, Tomas Fernandez-Montblanc, William Pringle, Hao-Cheng Yu, Linlin Cui, and Saeed Moghimi
Geosci. Model Dev., 16, 2565–2581, https://doi.org/10.5194/gmd-16-2565-2023, https://doi.org/10.5194/gmd-16-2565-2023, 2023
Short summary
Short summary
Simulating global ocean from deep basins to coastal areas is a daunting task but is important for disaster mitigation efforts. We present a new 3D global ocean model on flexible mesh to study both tidal and nontidal processes and total water prediction. We demonstrate the potential for
seamlesssimulation, on a single mesh, from the global ocean to a few estuaries along the US West Coast. The model can serve as the backbone of a global tide surge and compound flooding forecasting framework.
Qi Shu, Qiang Wang, Chuncheng Guo, Zhenya Song, Shizhu Wang, Yan He, and Fangli Qiao
Geosci. Model Dev., 16, 2539–2563, https://doi.org/10.5194/gmd-16-2539-2023, https://doi.org/10.5194/gmd-16-2539-2023, 2023
Short summary
Short summary
Ocean models are often used for scientific studies on the Arctic Ocean. Here the Arctic Ocean simulations by state-of-the-art global ocean–sea-ice models participating in the Ocean Model Intercomparison Project (OMIP) were evaluated. The simulations on Arctic Ocean hydrography, freshwater content, stratification, sea surface height, and gateway transports were assessed and the common biases were detected. The simulations forced by different atmospheric forcing were also evaluated.
Manuel Aghito, Loris Calgaro, Knut-Frode Dagestad, Christian Ferrarin, Antonio Marcomini, Øyvind Breivik, and Lars Robert Hole
Geosci. Model Dev., 16, 2477–2494, https://doi.org/10.5194/gmd-16-2477-2023, https://doi.org/10.5194/gmd-16-2477-2023, 2023
Short summary
Short summary
The newly developed ChemicalDrift model can simulate the transport and fate of chemicals in the ocean and in coastal regions. The model combines ocean physics, including transport due to currents, turbulence due to surface winds and the sinking of particles to the sea floor, with ocean chemistry, such as the partitioning, the degradation and the evaporation of chemicals. The model will be utilized for risk assessment of ocean and sea-floor contamination from pollutants emitted from shipping.
Nieves G. Valiente, Andrew Saulter, Breogan Gomez, Christopher Bunney, Jian-Guo Li, Tamzin Palmer, and Christine Pequignet
Geosci. Model Dev., 16, 2515–2538, https://doi.org/10.5194/gmd-16-2515-2023, https://doi.org/10.5194/gmd-16-2515-2023, 2023
Short summary
Short summary
We document the Met Office operational global and regional wave models which provide wave forecasts up to 7 d ahead. Our models present coarser resolution offshore to higher resolution near the coastline. The increased resolution led to replication of the extremes but to some overestimation during modal conditions. If currents are included, wave directions and long period swells near the coast are significantly improved. New developments focus on the optimisation of the models with resolution.
Maxime Beauchamp, Quentin Febvre, Hugo Georgenthum, and Ronan Fablet
Geosci. Model Dev., 16, 2119–2147, https://doi.org/10.5194/gmd-16-2119-2023, https://doi.org/10.5194/gmd-16-2119-2023, 2023
Short summary
Short summary
4DVarNet is a learning-based method based on traditional data assimilation (DA). This new class of algorithms can be used to provide efficient reconstructions of a dynamical system based on single observations. We provide a 4DVarNet application to sea surface height reconstructions based on nadir and future Surface Water and Ocean and Topography data. It outperforms other methods, from optimal interpolation to sophisticated DA algorithms. This work is part of on-going AI Chair Oceanix projects.
Bin Xiao, Fangli Qiao, Qi Shu, Xunqiang Yin, Guansuo Wang, and Shihong Wang
Geosci. Model Dev., 16, 1755–1777, https://doi.org/10.5194/gmd-16-1755-2023, https://doi.org/10.5194/gmd-16-1755-2023, 2023
Short summary
Short summary
A new global surface-wave–tide–circulation coupled ocean model (FIO-COM32) with a resolution of 1/32° × 1/32° is developed and validated. Both the promotion of the horizontal resolution and included physical processes are shown to be important contributors to the significant improvements in FIO-COM32 simulations. It is time to merge these separated model components (surface waves, tidal currents and ocean circulation) and start a new generation of ocean model development.
Jeff Polton, James Harle, Jason Holt, Anna Katavouta, Dale Partridge, Jenny Jardine, Sarah Wakelin, Julia Rulent, Anthony Wise, Katherine Hutchinson, David Byrne, Diego Bruciaferri, Enda O'Dea, Michela De Dominicis, Pierre Mathiot, Andrew Coward, Andrew Yool, Julien Palmiéri, Gennadi Lessin, Claudia Gabriela Mayorga-Adame, Valérie Le Guennec, Alex Arnold, and Clément Rousset
Geosci. Model Dev., 16, 1481–1510, https://doi.org/10.5194/gmd-16-1481-2023, https://doi.org/10.5194/gmd-16-1481-2023, 2023
Short summary
Short summary
The aim is to increase the capacity of the modelling community to respond to societally important questions that require ocean modelling. The concept of reproducibility for regional ocean modelling is developed: advocating methods for reproducible workflows and standardised methods of assessment. Then, targeting the NEMO framework, we give practical advice and worked examples, highlighting key considerations that will the expedite development cycle and upskill the user community.
Nairita Pal, Kristin N. Barton, Mark R. Petersen, Steven R. Brus, Darren Engwirda, Brian K. Arbic, Andrew F. Roberts, Joannes J. Westerink, and Damrongsak Wirasaet
Geosci. Model Dev., 16, 1297–1314, https://doi.org/10.5194/gmd-16-1297-2023, https://doi.org/10.5194/gmd-16-1297-2023, 2023
Short summary
Short summary
Understanding tides is essential to accurately predict ocean currents. Over the next several decades coastal processes such as flooding and erosion will be severely impacted due to climate change. Tides affect currents along the coastal regions the most. In this paper we show the results of implementing tides in a global ocean model known as MPAS–Ocean. We also show how Antarctic ice shelf cavities affect global tides. Our work points towards future research with tide–ice interactions.
Sébastien Petton, Valérie Garnier, Matthieu Caillaud, Laurent Debreu, and Franck Dumas
Geosci. Model Dev., 16, 1191–1211, https://doi.org/10.5194/gmd-16-1191-2023, https://doi.org/10.5194/gmd-16-1191-2023, 2023
Short summary
Short summary
The nesting AGRIF library is implemented in the MARS3D hydrodynamic model, a semi-implicit, free-surface numerical model which uses a time scheme as an alternating-direction implicit (ADI) algorithm. Two applications at the regional and coastal scale are introduced. We compare the two-nesting approach to the classic offline one-way approach, based on an in situ dataset. This method is an efficient means to significantly improve the physical hydrodynamics and unravel ecological challenges.
Noam S. Vogt-Vincent and Helen L. Johnson
Geosci. Model Dev., 16, 1163–1178, https://doi.org/10.5194/gmd-16-1163-2023, https://doi.org/10.5194/gmd-16-1163-2023, 2023
Short summary
Short summary
Ocean currents transport things over large distances across the ocean surface. Predicting this transport is key for tackling many environmental problems, such as marine plastic pollution and coral reef resilience. However, doing this requires a good understanding ocean currents, which is currently lacking. Here, we present and validate state-of-the-art simulations for surface currents in the southwestern Indian Ocean, which will support future marine dispersal studies across this region.
Pengyang Song, Dmitry Sidorenko, Patrick Scholz, Maik Thomas, and Gerrit Lohmann
Geosci. Model Dev., 16, 383–405, https://doi.org/10.5194/gmd-16-383-2023, https://doi.org/10.5194/gmd-16-383-2023, 2023
Short summary
Short summary
Tides have essential effects on the ocean and climate. Most previous research applies parameterised tidal mixing to discuss their effects in models. By comparing the effect of a tidal mixing parameterisation and tidal forcing on the ocean state, we assess the advantages and disadvantages of the two methods. Our results show that tidal mixing in the North Pacific Ocean strongly affects the global thermohaline circulation. We also list some effects that are not considered in the parameterisation.
Marko Rus, Anja Fettich, Matej Kristan, and Matjaž Ličer
Geosci. Model Dev., 16, 271–288, https://doi.org/10.5194/gmd-16-271-2023, https://doi.org/10.5194/gmd-16-271-2023, 2023
Short summary
Short summary
We propose a new fast and reliable deep-learning architecture HIDRA2 for sea level and storm surge modeling. HIDRA2 features new feature encoders and a fusion-regression block. We test HIDRA2 on Adriatic storm surges, which depend on an interaction between tides and seiches. We demonstrate that HIDRA2 learns to effectively mimic the timing and amplitude of Adriatic seiches. This is essential for reliable HIDRA2 predictions of total storm surge sea levels.
Joao Marcos Azevedo Correia de Souza, Sutara H. Suanda, Phellipe P. Couto, Robert O. Smith, Colette Kerry, and Moninya Roughan
Geosci. Model Dev., 16, 211–231, https://doi.org/10.5194/gmd-16-211-2023, https://doi.org/10.5194/gmd-16-211-2023, 2023
Short summary
Short summary
The current paper describes the configuration and evaluation of the Moana Ocean Hindcast, a > 25-year simulation of the ocean state around New Zealand using the Regional Ocean Modeling System v3.9. This is the first open-access, long-term, continuous, realistic ocean simulation for this region and provides information for improving the understanding of the ocean processes that affect the New Zealand exclusive economic zone.
Hao Huang, Pengyang Song, Shi Qiu, Jiaqi Guo, and Xueen Chen
Geosci. Model Dev., 16, 109–133, https://doi.org/10.5194/gmd-16-109-2023, https://doi.org/10.5194/gmd-16-109-2023, 2023
Short summary
Short summary
The Oceanic Regional Circulation and Tide Model (ORCTM) is developed to reproduce internal solitary wave dynamics. The three-dimensional nonlinear momentum equations are involved with the nonhydrostatic pressure obtained via solving the Poisson equation. The validation experimental results agree with the internal wave theories and observations, demonstrating that the ORCTM can successfully describe the life cycle of nonlinear internal solitary waves under different oceanic environments.
David E. Gwyther, Shane R. Keating, Colette Kerry, and Moninya Roughan
Geosci. Model Dev., 16, 157–178, https://doi.org/10.5194/gmd-16-157-2023, https://doi.org/10.5194/gmd-16-157-2023, 2023
Short summary
Short summary
Ocean eddies are important for weather, climate, biology, navigation, and search and rescue. Since eddies change rapidly, models that incorporate or assimilate observations are required to produce accurate eddy timings and locations, yet the model accuracy is rarely assessed below the surface. We use a unique type of ocean model experiment to assess three-dimensional eddy structure in the East Australian Current and explore two pathways in which this subsurface structure is being degraded.
Shun Ohishi, Takemasa Miyoshi, and Misako Kachi
Geosci. Model Dev., 15, 9057–9073, https://doi.org/10.5194/gmd-15-9057-2022, https://doi.org/10.5194/gmd-15-9057-2022, 2022
Short summary
Short summary
An adaptive observation error inflation (AOEI) method was proposed for atmospheric data assimilation to mitigate erroneous analysis updates caused by large observation-minus-forecast differences for satellite brightness temperature around clear- and cloudy-sky boundaries. This study implemented the AOEI with an ocean data assimilation system, leading to an improvement of analysis accuracy and dynamical balance around the frontal regions with large meridional temperature differences.
Diego Bruciaferri, Marina Tonani, Isabella Ascione, Fahad Al Senafi, Enda O'Dea, Helene T. Hewitt, and Andrew Saulter
Geosci. Model Dev., 15, 8705–8730, https://doi.org/10.5194/gmd-15-8705-2022, https://doi.org/10.5194/gmd-15-8705-2022, 2022
Short summary
Short summary
More accurate predictions of the Gulf's ocean dynamics are needed. We investigate the impact on the predictive skills of a numerical shelf sea model of the Gulf after changing a few key aspects. Increasing the lateral and vertical resolution and optimising the vertical coordinate system to best represent the leading physical processes at stake significantly improve the accuracy of the simulated dynamics. Additional work may be needed to get real benefit from using a more realistic bathymetry.
Matthias Gröger, Manja Placke, H. E. Markus Meier, Florian Börgel, Sandra-Esther Brunnabend, Cyril Dutheil, Ulf Gräwe, Magnus Hieronymus, Thomas Neumann, Hagen Radtke, Semjon Schimanke, Jian Su, and Germo Väli
Geosci. Model Dev., 15, 8613–8638, https://doi.org/10.5194/gmd-15-8613-2022, https://doi.org/10.5194/gmd-15-8613-2022, 2022
Short summary
Short summary
Comparisons of oceanographic climate data from different models often suffer from different model setups, forcing fields, and output of variables. This paper provides a protocol to harmonize these elements to set up multidecadal simulations for the Baltic Sea, a marginal sea in Europe. First results are shown from six different model simulations from four different model platforms. Topical studies for upwelling, marine heat waves, and stratification are also assessed.
Shun Ohishi, Tsutomu Hihara, Hidenori Aiki, Joji Ishizaka, Yasumasa Miyazawa, Misako Kachi, and Takemasa Miyoshi
Geosci. Model Dev., 15, 8395–8410, https://doi.org/10.5194/gmd-15-8395-2022, https://doi.org/10.5194/gmd-15-8395-2022, 2022
Short summary
Short summary
We develop an ensemble-Kalman-filter-based regional ocean data assimilation system in which satellite and in situ observations are assimilated at a daily frequency. We find the best setting for dynamical balance and accuracy based on sensitivity experiments focused on how to inflate the ensemble spread and how to apply the analysis update to the model evolution. This study has a broader impact on more general data assimilation systems in which the initial shocks are a significant issue.
Hector S. Torres, Patrice Klein, Jinbo Wang, Alexander Wineteer, Bo Qiu, Andrew F. Thompson, Lionel Renault, Ernesto Rodriguez, Dimitris Menemenlis, Andrea Molod, Christopher N. Hill, Ehud Strobach, Hong Zhang, Mar Flexas, and Dragana Perkovic-Martin
Geosci. Model Dev., 15, 8041–8058, https://doi.org/10.5194/gmd-15-8041-2022, https://doi.org/10.5194/gmd-15-8041-2022, 2022
Short summary
Short summary
Wind work at the air-sea interface is the scalar product of winds and currents and is the transfer of kinetic energy between the ocean and the atmosphere. Using a new global coupled ocean-atmosphere simulation performed at kilometer resolution, we show that all scales of winds and currents impact the ocean dynamics at spatial and temporal scales. The consequential interplay of surface winds and currents in the numerical simulation motivates the need for a winds and currents satellite mission.
Zhanpeng Zhuang, Quanan Zheng, Yongzeng Yang, Zhenya Song, Yeli Yuan, Chaojie Zhou, Xinhua Zhao, Ting Zhang, and Jing Xie
Geosci. Model Dev., 15, 7221–7241, https://doi.org/10.5194/gmd-15-7221-2022, https://doi.org/10.5194/gmd-15-7221-2022, 2022
Short summary
Short summary
We evaluate the impacts of surface waves and internal tides on the upper-ocean mixing in the Indian Ocean. The surface-wave-generated turbulent mixing is dominant if depth is < 30 m, while the internal-tide-induced mixing is larger than surface waves in the ocean interior from 40
to 130 m. The simulated thermal structure, mixed layer depth and surface current are all improved when the mixing schemes are jointly incorporated into the ocean model because of the strengthened vertical mixing.
Giulia Bonino, Doroteaciro Iovino, Laurent Brodeau, and Simona Masina
Geosci. Model Dev., 15, 6873–6889, https://doi.org/10.5194/gmd-15-6873-2022, https://doi.org/10.5194/gmd-15-6873-2022, 2022
Short summary
Short summary
The sea surface temperature (SST) is highly influenced by the transfer of energy driven by turbulent air–sea fluxes (TASFs). In the NEMO ocean general circulation model, TASFs are computed by means of bulk formulas. Bulk formulas require the choice of a given bulk parameterization, which influences the magnitudes of the TASFs. Our results show that parameterization-related SST differences are primarily sensitive to the wind stress differences across parameterizations.
Gustavo M. Marques, Nora Loose, Elizabeth Yankovsky, Jacob M. Steinberg, Chiung-Yin Chang, Neeraja Bhamidipati, Alistair Adcroft, Baylor Fox-Kemper, Stephen M. Griffies, Robert W. Hallberg, Malte F. Jansen, Hemant Khatri, and Laure Zanna
Geosci. Model Dev., 15, 6567–6579, https://doi.org/10.5194/gmd-15-6567-2022, https://doi.org/10.5194/gmd-15-6567-2022, 2022
Short summary
Short summary
We present an idealized ocean model configuration and a set of simulations performed using varying horizontal grid spacing. While the model domain is idealized, it resembles important geometric features of the Atlantic and Southern oceans. The simulations described here serve as a framework to effectively study mesoscale eddy dynamics, to investigate the effect of mesoscale eddies on the large-scale dynamics, and to test and evaluate eddy parameterizations.
David E. Gwyther, Colette Kerry, Moninya Roughan, and Shane R. Keating
Geosci. Model Dev., 15, 6541–6565, https://doi.org/10.5194/gmd-15-6541-2022, https://doi.org/10.5194/gmd-15-6541-2022, 2022
Short summary
Short summary
The ocean current flowing along the southeastern coast of Australia is called the East Australian Current (EAC). Using computer simulations, we tested how surface and subsurface observations might improve models of the EAC. Subsurface observations are particularly important for improving simulations, and if made in the correct location and time, can have impact 600 km upstream. The stability of the current affects model estimates could be capitalized upon in future observing strategies.
Giorgio Micaletto, Ivano Barletta, Silvia Mocavero, Ivan Federico, Italo Epicoco, Giorgia Verri, Giovanni Coppini, Pasquale Schiano, Giovanni Aloisio, and Nadia Pinardi
Geosci. Model Dev., 15, 6025–6046, https://doi.org/10.5194/gmd-15-6025-2022, https://doi.org/10.5194/gmd-15-6025-2022, 2022
Short summary
Short summary
The full exploitation of supercomputing architectures requires a deep revision of the current climate models. This paper presents the parallelization of the three-dimensional hydrodynamic model SHYFEM (System of HydrodYnamic Finite Element Modules). Optimized numerical libraries were used to partition the model domain and solve the sparse linear system of equations in parallel. The performance assessment demonstrates a good level of scalability with a realistic configuration used as a benchmark.
Young-Kwang Choi, Fengyan Shi, Matt Malej, Jane M. Smith, James T. Kirby, and Stephan T. Grilli
Geosci. Model Dev., 15, 5441–5459, https://doi.org/10.5194/gmd-15-5441-2022, https://doi.org/10.5194/gmd-15-5441-2022, 2022
Short summary
Short summary
The multi-grid-nesting technique is an important methodology used for modeling transoceanic tsunamis and coastal effects. In this study, we developed a two-way nesting interface in a multi-grid-nesting system for the Boussinesq wave model FUNWAVE-TVD. The interface acts as a
backboneof the nesting framework, handling data input, output, time sequencing, and internal interactions between grids at different scales.
Chen Zhao, Rupert Gladstone, Benjamin Keith Galton-Fenzi, David Gwyther, and Tore Hattermann
Geosci. Model Dev., 15, 5421–5439, https://doi.org/10.5194/gmd-15-5421-2022, https://doi.org/10.5194/gmd-15-5421-2022, 2022
Short summary
Short summary
We use a coupled ice–ocean model to explore an oscillation feature found in several contributing models to MISOMIP1. The oscillation is closely related to the discretized grounding line retreat and likely strengthened by the buoyancy–melt feedback and/or melt–geometry feedback near the grounding line, and frequent ice–ocean coupling. Our model choices have a non-trivial impact on mean melt and ocean circulation strength, which might be interesting for the coupled ice–ocean community.
Benoît Pasquier, Sophia K. V. Hines, Hengdi Liang, Yingzhe Wu, Steven L. Goldstein, and Seth G. John
Geosci. Model Dev., 15, 4625–4656, https://doi.org/10.5194/gmd-15-4625-2022, https://doi.org/10.5194/gmd-15-4625-2022, 2022
Short summary
Short summary
Neodymium isotopes in seawater have the potential to provide key information about ocean circulation, both today and in the past. This can shed light on the underlying drivers of global climate, which will improve our ability to predict future climate change, but uncertainties in our understanding of neodymium cycling have limited use of this tracer. We present a new model of neodymium in the modern ocean that runs extremely fast, matches observations, and is freely available for development.
Pedro Duarte, Jostein Brændshøi, Dmitry Shcherbin, Pauline Barras, Jon Albretsen, Yvonne Gusdal, Nicholas Szapiro, Andreas Martinsen, Annette Samuelsen, Keguang Wang, and Jens Boldingh Debernard
Geosci. Model Dev., 15, 4373–4392, https://doi.org/10.5194/gmd-15-4373-2022, https://doi.org/10.5194/gmd-15-4373-2022, 2022
Short summary
Short summary
Sea ice models are often implemented for very large domains beyond the regions of sea ice formation, such as the whole Arctic or all of Antarctica. In this study, we implement changes in the Los Alamos Sea Ice Model, allowing it to be implemented for relatively small regions within the Arctic or Antarctica and yet considering the presence and influence of sea ice outside the represented areas. Such regional implementations are important when spatially detailed results are required.
Elias J. Hunter, Heidi L. Fuchs, John L. Wilkin, Gregory P. Gerbi, Robert J. Chant, and Jessica C. Garwood
Geosci. Model Dev., 15, 4297–4311, https://doi.org/10.5194/gmd-15-4297-2022, https://doi.org/10.5194/gmd-15-4297-2022, 2022
Short summary
Short summary
ROMSPath is an offline particle tracking model tailored for use with output from Regional Ocean Modeling System (ROMS) simulations. It is an update to an established system, the Lagrangian TRANSport (LTRANS) model, including a number of improvements. These include a modification of the model coordinate system which improved accuracy and numerical efficiency, and added functionality for nested grids and Stokes drift.
Alexander Barth, Aida Alvera-Azcárate, Charles Troupin, and Jean-Marie Beckers
Geosci. Model Dev., 15, 2183–2196, https://doi.org/10.5194/gmd-15-2183-2022, https://doi.org/10.5194/gmd-15-2183-2022, 2022
Short summary
Short summary
Earth-observing satellites provide routine measurement of several ocean parameters. However, these datasets have a significant amount of missing data due to the presence of clouds or other limitations of the employed sensors. This paper describes a method to infer the value of the missing satellite data based on a convolutional autoencoder (a specific type of neural network architecture). The technique also provides a reliable error estimate of the interpolated value.
Cited articles
Brunnabend, S.-E., Dijkstra, H. A., Kliphuis, M. A., van Werkhoven, B., Bal, H. E., Seinstra, F., Maassen, J., and van Meersbergen, M.: Changes in extreme regional sea surface height due to an abrupt weakening of the Atlantic meridional overturning circulation, Ocean Science, 10, 881–891, https://doi.org/10.5194/os-10-881-2014, 2014.
Buis, S., Piacentini, A., Déclat, D., and the PALM Group: PALM: a computational framework for assembling high-performance computing applications, Concurr. Comp.-Pract. E, 18, 231–245, 2006.
Cabay, S. and Jackson, L.: A Polynomial Extrapolation Method for Finding Limits and Antilimits of Vector Sequences, SIAM J. Numer. Anal., 13, 734–752, 1976.
Candy, A. S., Avdis, A., Hill, J., Gorman, G. J., and Piggott, M. D.: Integration of Geographic Information System frameworks into domain discretisation and meshing processes for geophysical models, Geosci. Model Dev. Discuss., 7, 5993–6060, https://doi.org/10.5194/gmdd-7-5993-2014, 2014.
Cazenave, A.: Present-day sea level change: Observations and causes, Rev. Geophys., 42, RG3001, https://doi.org/10.1029/2003RG000139, 2004.
CDO 2015: Climate Data Operators, available at: http://www.mpimet.mpg.de/cdo, 2015.
Cossarini, G., Querin, S., Solidoro, C., Sannino, G., Lazzari, P., Di Biagio, V., and Bolzon, G.: Development of BFMCOUPLER (v1.0), the coupling scheme that links the MITgcm and BFM models for ocean biogeochemistry simulations, Geosci. Model Dev., 10, 1423–1445, https://doi.org/10.5194/gmd-10-1423-2017, 2017.
Danilov, S.: Ocean modeling on unstructured meshes, Ocean Model., 69, 195–210, https://doi.org/10.1016/j.ocemod.2013.05.005, 2013.
Debreu, L. and Blayo, E.: Two-way embedding algorithms: a review: Submitted to Ocean Dynamics: Special Issue on Multi-Scale Modelling: Nested Grid and Unstructured Mesh Approaches, Ocean Dynam., 58, 415–428, 2008.
Debreu, L., Marchesiello, P., Penven, P., and Cambon, G.: Two-way nesting in split-explicit ocean models: Algorithms, implementation and validation, Ocean Model., 49–50, 1–21, 2012.
Dietrich, J., Zijlema, M., Westerink, J., Holthuijsen, L., Dawson, C., Luettich, R., Jensen, R., Smith, J., Stelling, G., and Stone, G.: Modeling hurricane waves and storm surge using integrally-coupled, scalable computations, Coast. Eng., 58, 45–65, 2011.
Dijkstra, H. A. and Katsman, C. A.: Temporal variability of the Wind-Driven Quasi-geostrophic Double Gyre Ocean Circulation: Basic Bifurcation Diagrams, Geophys. Astrophys. Fluid Dyn., 85, 195–232, 1997.
Djath, B., Melet, A., Verron, J., Mollines, J.-M., Barnler, B., Gourdeau, L., and Debreu, L.: A 1/36° model of the Solomon Sea embedded into a global ocean model: On the setting up of an interactive open boundary nested model system, J. Oper. Oceanogr., 7, 34–46, 2014.
Drost, N., Maassen, J., Van Meersbergen, M. A., Bal, H. E., Pelupessy, F., Zwart, S. P., Kliphuis, M., Dijkstra, H. A., and Seinstra, F. J.: High-performance distributed multi-model/multi-kernel simulations: A case-study in jungle computing, 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum (IPDPSW), 150–162, 2012.
Dubois, P. F., Hinsen, K., and Hugunin, J.: Numerical Python, Comput. Phys., 10, 262–267, 1996.
Farrell, P. E., Piggott, M. D., Pain, C. C., Gorman, G. J., and Wilson, C. R. G.: Conservative interpolation between unstructured meshes via supermesh construction, Comput. Method. Appl. M., 198, 2632–2642, https://doi.org/10.1016/j.cma.2009.03.004, 2009.
Flierl, G. R.: Models of vertical structure and the calibration of two-layer models, Dynam. Atmos. Oceans, 2, 341–381, 1978.
Gent, P. R. and McWilliams, J. C.: Isopycnal mixing in ocean circulation models, J. Phys. Oceanogr., 20, 150–155, 1990.
Gregersen, J. B., Gijsbers, P. J. A., and Westen, S. J. P.: OpenMI: Open Modelling Interface, J. Hydroinform., 9, 175–191, 2007.
Griffies, S. M., Winton, M., Anderson, W. G., Benson, R., Delworth, T. L., Dufour, C. O., Dunne, J. P., Goddard, P., Morrison, A. K., Rosati, A., Wittenberg, A. T., Yin, J., and Zhang, R.: Impacts on Ocean Heat from Transient Mesoscale Eddies in a Hierarchy of Climate Models, J. Climate, 28, 952–977, 2015.
Hill, C., DeLuca, C., Balaji, V., Suarez, M., and da Silva, A.: The architecture of the earth system modeling framework, Comput. Sci. Eng., 6, 18–28, 2004.
Holland, G. J.: An Analytic Model of the Wind and Pressure Profiles in Hurricanes, Mon. Weather Rev., 108, 1212–1218, 1980.
Hunter, J. D.: Matplotlib: A 2D graphics environment, Comput. Sci. Eng., 9, 90–95, 2007.
Ierley, G. R. and Sheremet, V. A.: Multiple solutions and advection-dominated flows in the wind-driven circulation – Part I: Slip, J. Mar. Res., 53, 703–737, 1995.
IPCC: Climate Change 2013: The Physical Science Basis, Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change (IPCC), edited by: Stocker, T. F., Qin, D., Plattner, G.-K., Tignor, M., Allen, S. K., Boschung, J., Nauels, A., Xia, Y., Bex, V., and Midgley, P. M., Cambridge University Press, Cambridge, UK, New York, NY, USA, 2013.
Jacob, R., Larson, J., and Ong, E.: M × N communication and parallel interpolation in Community Climate System Model version 3 using the Model Coupling Toolkit, Int. J. High Perform. C., 19, 293–307, 2005.
Jones, P. W.: First-and second-order conservative remapping schemes for grids in spherical coordinates, Mon. Weather Rev., 127, 2204–2210, 1999.
Komen, G., Cavaleri, L., Donelan, M., Hasselmann, K., Hasselmann, S., and Janssen, P.: Dynamics and Modelling of Ocean Waves, Cambridge University Press, 1994.
Larson, J.: The Model Coupling Toolkit: A New Fortran90 Toolkit for Building Multiphysics Parallel Coupled Models, Int. J. High Perform. C., 19, 277–292, 2005.
Le Bars, D., De Ruijter, W. P. M., and Dijkstra, H. A.: A New Regime of the Agulhas Current Retroflection: Turbulent Choking of Indian–Atlantic leakage, J. Phys. Oceanogr., 42, 1158–1172, 2012.
Leuttich, R. and Westerink, J.: Formulation and Numerical Implementation of the 2D/3D ADCIRC Finite Element Model Version 44.XX, Tech. rep., 2004.
libSupermesh: libsupermesh parallel supermeshing library, available at: https://bitbucket.org/libsupermesh/libsupermesh, 2016.
Maltrud, M., Bryan, F., and Peacock, S.: Boundary impulse response functions in a century-long eddying global ocean simulation, Environ. Fluid Mech., 10, 275–295, 2010.
Mason, E., Pascual, A., and McWilliams, J. C.: A new sea surface height–based code for oceanic mesoscale eddy tracking, J. Atmos. Ocean. Tech., 31, 1181–1188, 2014.
Munk, W.: On the wind driven ocean circulation, J. Meteorol., 7, 79–93, 1950.
Peckham, S. D., Hutton, E. W., and Norris, B.: A component-based approach to integrated modeling in the geosciences: The design of CSDMS, Comput. Geosci., 53, 3–12, 2013.
Pedlosky, J.: Ocean Circulation Theory, Springer, 1996.
Pelupessy, F. I., van Elteren, A., de Vries, N., McMillan, S. L. W., Drost, N., and Portegies Zwart, S. F.: The Astrophysical Multipurpose Software Environment, Astron. Astrophys., 557, 23 pp., 2013.
Portegies Zwart, S., McMillan, S., Harfst, S., Groen, D., Fujii, M., Nualláin, B. Ó., Glebbeek, E., Heggie, D., Lombardi, J., Hut, P., Angelou, V., Banerjee, S., Belkus, H., Fragos, T., Fregeau, J., Gaburov, E., Izzard, R., Jurić, M., Justham, S., Sottoriva, A., Teuben, P., van Bever, J., Yaron, O., and Zemp, M.: A multiphysics and multiscale software environment for modeling astrophysical systems, New Astron., 14, 369–378, https://doi.org/10.1016/j.newast.2008.10.006, 2009.
Portegies Zwart, S., McMillan, S. L. W., van Elteren, E., Pelupessy, I., and de Vries, N.: Multi-physics simulations using a hierarchical interchangeable software interface, Comput. Phys. Commun., 183, 456–468, 2013.
Rew, R. and Davis, G.: NetCDF: an interface for scientific data access, IEEE Comput. Graph., 10, 76–82, https://doi.org/10.1109/38.56302, 1990.
Seinstra, F. J., Maassen, J., Van Nieuwpoort, R. V., Drost, N., Van Kessel, T., Van Werkhoven, B., Urbani, J., Jacobs, C., Kielmann, T., and Bal, H. E.: Jungle computing: Distributed supercomputing beyond clusters, grids, and clouds, in: Grids, Clouds and Virtualization, Springer, 167–197, 2011.
Sheremet, V. A., Ierley, G. R., and Kamenkovich, V. M.: Eigenanalysis of the two-dimensional wind-driven ocean circulation problem, J. Mar. Res., 55, 57–92, 1997.
Smith, R. D., Jones, P. W., Briegleb, B., Bryan, F., Danabasoglu, G., Dennis, J., Dukowicz, J., Eden, C., Fox-Kemper, B., Gent, P., Hecht, M. , Jayne, S., Jochum, M. , Large, W., Lindsay, K., Maltrud, M., Norton, N., Peacock, S., Vertenstein, M., and Yeager, S.: The Parallel Ocean Program (POP) reference manual, Los Alamos National Laboratory, LAUR-10-01853, 2010.
Stommel, H.: The westward intensification of wind-driven ocean currents, EOS T. Am. Geophys. Un., 22, 202–206, 1948.
Sverdrup, H. U.: Wind-driven currents in a baroclinic ocean; with application to the equatorial currents of the eastern Pacific, P. Natl. Acad. Sci. USA, 33, 318–326, 1947.
SWAN: Scientific and Technical Documentation, Delft University, the Netherlands, 2015.
Valcke, S.: The OASIS3 coupler: a European climate modelling community software, Geosci. Model Dev., 6, 373–388, https://doi.org/10.5194/gmd-6-373-2013, 2013.
Valcke, S., Balaji, V., Craig, A., DeLuca, C., Dunlap, R., Ford, R. W., Jacob, R., Larson, J., O'Kuinghttons, R., Riley, G. D., and Vertenstein, M.: Coupling technologies for Earth System Modelling, Geosci. Model Dev., 5, 1589–1596, https://doi.org/10.5194/gmd-5-1589-2012, 2012.
van Rossum, G.: Python tutorial, Technical Report CS-R9526, Centrum voor Wiskunde en Informatica, Amsterdam, the Netherlands, 1995.
van Werkhoven, B., Maassen, J., Kliphuis, M., Dijkstra, H. A., Brunnabend, S. E., van Meersbergen, M., Seinstra, F. J., and Bal, H. E.: A distributed computing approach to improve the performance of the Parallel Ocean Program (v2.1), Geosci. Model Dev., 7, 267–281, https://doi.org/10.5194/gmd-7-267-2014, 2014.
Viebahn, J. and Dijkstra, H. A.: Critical Transition Analysis of the Deterministic Wind-Driven Ocean Circulation – A Flux-Based Network Approach, Int. J. Bifurcat. Chaos, 24, 1430007, https://doi.org/10.1142/S0218127414300079, 2014.
Viebahn, J. and Eden, C.: Towards the impact of eddies on the response of the Southern Ocean to climate change, Ocean Model., 34, 150–165, 2010.
Zijlema, M.: Computation of wind-wave spectra in coastal waters with SWAN on unstructured grids, Coast. Eng., 57, 267–277, 2010.
Short summary
Researchers from the Netherlands present OMUSE, a software package
developed from core technology originating in the astrophysical
community. Using OMUSE, oceanographic and climate researchers can
develop numerical models of the ocean and the interactions between
different parts of the ocean and the atmosphere. This provides a novel
way to investigate, for example, the local effects of climate change on
the ocean. OMUSE is freely available as open-source software.
Researchers from the Netherlands present OMUSE, a software package
developed from core...