Articles | Volume 8, issue 10
https://doi.org/10.5194/gmd-8-3033-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue:
https://doi.org/10.5194/gmd-8-3033-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model experiment description paper
| 
02 Oct 2015
Model experiment description paper |
| 02 Oct 2015
Impact of climate, vegetation, soil and crop management variables on multi-year ISBA-A-gs simulations of evapotranspiration over a Mediterranean crop site
S. Garrigues
CORRESPONDING AUTHOR
INRA, UMR1114 EMMAH, 84914 Avignon CEDEX 9, France
Université d'Avignon et des Pays de Vaucluse, UMR1114 EMMAH, 84000 Avignon, France
A. Olioso
INRA, UMR1114 EMMAH, 84914 Avignon CEDEX 9, France
Université d'Avignon et des Pays de Vaucluse, UMR1114 EMMAH, 84000 Avignon, France
D. Carrer
CNRM-GAME, UMR3589, Météo-France, CNRS, Toulouse, France
B. Decharme
CNRM-GAME, UMR3589, Météo-France, CNRS, Toulouse, France
J.-C. Calvet
CNRM-GAME, UMR3589, Météo-France, CNRS, Toulouse, France
E. Martin
CNRM-GAME, UMR3589, Météo-France, CNRS, Toulouse, France
S. Moulin
INRA, UMR1114 EMMAH, 84914 Avignon CEDEX 9, France
Université d'Avignon et des Pays de Vaucluse, UMR1114 EMMAH, 84000 Avignon, France
O. Marloie
URFM, INRA, Avignon, France
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Preprint archived
Short summary
Short summary
Seven instrumented lysimeters are used to assess the simulation of the soil water dynamic in one land surface model. Three water potential and hydraulic conductivity closed-form equations including one mixed form are evaluated. The mixed form is more relevant to simulate drainage especially during intense drainage events. Soil profile heterogeneity of one parameter of the closed-form equations is shown to be important.
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The Global Carbon Budget 2021 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Wouter Dorigo, Irene Himmelbauer, Daniel Aberer, Lukas Schremmer, Ivana Petrakovic, Luca Zappa, Wolfgang Preimesberger, Angelika Xaver, Frank Annor, Jonas Ardö, Dennis Baldocchi, Marco Bitelli, Günter Blöschl, Heye Bogena, Luca Brocca, Jean-Christophe Calvet, J. Julio Camarero, Giorgio Capello, Minha Choi, Michael C. Cosh, Nick van de Giesen, Istvan Hajdu, Jaakko Ikonen, Karsten H. Jensen, Kasturi Devi Kanniah, Ileen de Kat, Gottfried Kirchengast, Pankaj Kumar Rai, Jenni Kyrouac, Kristine Larson, Suxia Liu, Alexander Loew, Mahta Moghaddam, José Martínez Fernández, Cristian Mattar Bader, Renato Morbidelli, Jan P. Musial, Elise Osenga, Michael A. Palecki, Thierry Pellarin, George P. Petropoulos, Isabella Pfeil, Jarrett Powers, Alan Robock, Christoph Rüdiger, Udo Rummel, Michael Strobel, Zhongbo Su, Ryan Sullivan, Torbern Tagesson, Andrej Varlagin, Mariette Vreugdenhil, Jeffrey Walker, Jun Wen, Fred Wenger, Jean Pierre Wigneron, Mel Woods, Kun Yang, Yijian Zeng, Xiang Zhang, Marek Zreda, Stephan Dietrich, Alexander Gruber, Peter van Oevelen, Wolfgang Wagner, Klaus Scipal, Matthias Drusch, and Roberto Sabia
Hydrol. Earth Syst. Sci., 25, 5749–5804, https://doi.org/10.5194/hess-25-5749-2021, https://doi.org/10.5194/hess-25-5749-2021, 2021
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The International Soil Moisture Network (ISMN) is a community-based open-access data portal for soil water measurements taken at the ground and is accessible at https://ismn.earth. Over 1000 scientific publications and thousands of users have made use of the ISMN. The scope of this paper is to inform readers about the data and functionality of the ISMN and to provide a review of the scientific progress facilitated through the ISMN with the scope to shape future research and operations.
Anna B. Harper, Karina E. Williams, Patrick C. McGuire, Maria Carolina Duran Rojas, Debbie Hemming, Anne Verhoef, Chris Huntingford, Lucy Rowland, Toby Marthews, Cleiton Breder Eller, Camilla Mathison, Rodolfo L. B. Nobrega, Nicola Gedney, Pier Luigi Vidale, Fred Otu-Larbi, Divya Pandey, Sebastien Garrigues, Azin Wright, Darren Slevin, Martin G. De Kauwe, Eleanor Blyth, Jonas Ardö, Andrew Black, Damien Bonal, Nina Buchmann, Benoit Burban, Kathrin Fuchs, Agnès de Grandcourt, Ivan Mammarella, Lutz Merbold, Leonardo Montagnani, Yann Nouvellon, Natalia Restrepo-Coupe, and Georg Wohlfahrt
Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, https://doi.org/10.5194/gmd-14-3269-2021, 2021
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We evaluated 10 representations of soil moisture stress in the JULES land surface model against site observations of GPP and latent heat flux. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES. In addition, using soil matric potential presents the opportunity to include parameters specific to plant functional type to further improve modeled fluxes.
Thibault Guinaldo, Simon Munier, Patrick Le Moigne, Aaron Boone, Bertrand Decharme, Margarita Choulga, and Delphine J. Leroux
Geosci. Model Dev., 14, 1309–1344, https://doi.org/10.5194/gmd-14-1309-2021, https://doi.org/10.5194/gmd-14-1309-2021, 2021
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Lakes are of fundamental importance in the Earth system as they support essential environmental and economic services such as freshwater supply. Despite the impact of lakes on the water cycle, they are generally not considered in global hydrological studies. Based on a model called MLake, we assessed both the importance of lakes in simulating river flows at global scale and the value of their level variations for water resource management.
Camilla Mathison, Andrew J. Challinor, Chetan Deva, Pete Falloon, Sébastien Garrigues, Sophie Moulin, Karina Williams, and Andy Wiltshire
Geosci. Model Dev., 14, 437–471, https://doi.org/10.5194/gmd-14-437-2021, https://doi.org/10.5194/gmd-14-437-2021, 2021
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Sequential cropping (also known as multiple or double cropping) is a common cropping system, particularly in tropical regions. Typically, land surface models only simulate a single crop per year. To understand how sequential crops influence surface fluxes, we implement sequential cropping in JULES to simulate all the crops grown within a year at a given location in a seamless way. We demonstrate the method using a site in Avignon, four locations in India and a regional run for two Indian states.
Richard Essery, Hyungjun Kim, Libo Wang, Paul Bartlett, Aaron Boone, Claire Brutel-Vuilmet, Eleanor Burke, Matthias Cuntz, Bertrand Decharme, Emanuel Dutra, Xing Fang, Yeugeniy Gusev, Stefan Hagemann, Vanessa Haverd, Anna Kontu, Gerhard Krinner, Matthieu Lafaysse, Yves Lejeune, Thomas Marke, Danny Marks, Christoph Marty, Cecile B. Menard, Olga Nasonova, Tomoko Nitta, John Pomeroy, Gerd Schädler, Vladimir Semenov, Tatiana Smirnova, Sean Swenson, Dmitry Turkov, Nander Wever, and Hua Yuan
The Cryosphere, 14, 4687–4698, https://doi.org/10.5194/tc-14-4687-2020, https://doi.org/10.5194/tc-14-4687-2020, 2020
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Climate models are uncertain in predicting how warming changes snow cover. This paper compares 22 snow models with the same meteorological inputs. Predicted trends agree with observations at four snow research sites: winter snow cover does not start later, but snow now melts earlier in spring than in the 1980s at two of the sites. Cold regions where snow can last until late summer are predicted to be particularly sensitive to warming because the snow then melts faster at warmer times of year.
Clément Albergel, Yongjun Zheng, Bertrand Bonan, Emanuel Dutra, Nemesio Rodríguez-Fernández, Simon Munier, Clara Draper, Patricia de Rosnay, Joaquin Muñoz-Sabater, Gianpaolo Balsamo, David Fairbairn, Catherine Meurey, and Jean-Christophe Calvet
Hydrol. Earth Syst. Sci., 24, 4291–4316, https://doi.org/10.5194/hess-24-4291-2020, https://doi.org/10.5194/hess-24-4291-2020, 2020
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LDAS-Monde is a global offline land data assimilation system (LDAS) that jointly assimilates satellite-derived observations of surface soil moisture (SSM) and leaf area index (LAI) into the ISBA (Interaction between Soil Biosphere and Atmosphere) land surface model (LSM). This study demonstrates that LDAS-Monde is able to detect, monitor and forecast the impact of extreme weather on land surface states.
Patrick Le Moigne, François Besson, Eric Martin, Julien Boé, Aaron Boone, Bertrand Decharme, Pierre Etchevers, Stéphanie Faroux, Florence Habets, Matthieu Lafaysse, Delphine Leroux, and Fabienne Rousset-Regimbeau
Geosci. Model Dev., 13, 3925–3946, https://doi.org/10.5194/gmd-13-3925-2020, https://doi.org/10.5194/gmd-13-3925-2020, 2020
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The study describes how a hydrometeorological model, operational at Météo-France, has been improved. Particular emphasis is placed on the impact of climatic data, surface, and soil parametrizations on the model results. Model simulations and evaluations carried out on a variety of measurements of river flows and snow depths are presented. All improvements in climate, surface data, and model physics have a positive impact on system performance.
Yongjun Zheng, Clément Albergel, Simon Munier, Bertrand Bonan, and Jean-Christophe Calvet
Geosci. Model Dev., 13, 3607–3625, https://doi.org/10.5194/gmd-13-3607-2020, https://doi.org/10.5194/gmd-13-3607-2020, 2020
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This study proposes a sophisticated dynamically running job scheme as well as an innovative parallel IO algorithm to reduce the time to solution of an offline framework for high-dimensional ensemble Kalman filters. The offline and online modes of ensemble Kalman filters are built to comprehensively assess their time to solution efficiencies. The offline mode is substantially faster than the online mode in terms of time to solution, especially for large-scale assimilation problems.
Ghizlane Aouade, Lionel Jarlan, Jamal Ezzahar, Salah Er-Raki, Adrien Napoly, Abdelfattah Benkaddour, Said Khabba, Gilles Boulet, Sébastien Garrigues, Abdelghani Chehbouni, and Aaron Boone
Hydrol. Earth Syst. Sci., 24, 3789–3814, https://doi.org/10.5194/hess-24-3789-2020, https://doi.org/10.5194/hess-24-3789-2020, 2020
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Our objective is to question the representation of the energy budget in surface–vegetation–atmosphere transfer models for the prediction of the convective fluxes in crops with complex structures (row) and under transient hydric regimes due to irrigation. The main result is that a coupled multiple energy balance approach is necessary to properly predict surface exchanges for these complex crops. It also points out the need for other similar studies on various crops with different sparsity levels.
Pierre Nabat, Samuel Somot, Christophe Cassou, Marc Mallet, Martine Michou, Dominique Bouniol, Bertrand Decharme, Thomas Drugé, Romain Roehrig, and David Saint-Martin
Atmos. Chem. Phys., 20, 8315–8349, https://doi.org/10.5194/acp-20-8315-2020, https://doi.org/10.5194/acp-20-8315-2020, 2020
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The present work aims at better understanding regional climate–aerosol interactions over the Euro-Mediterranean region by studying the relationships between aerosols and atmospheric circulation. Based on 40-year regional climate simulations (1979–2018), our results show the role of the North Atlantic Oscillation in driving the interannual aerosol variability, and that of weather regimes for the daily variability, with ensuing effects on shortwave surface radiation and surface temperature.
Victor Pellet, Filipe Aires, Fabrice Papa, Simon Munier, and Bertrand Decharme
Hydrol. Earth Syst. Sci., 24, 3033–3055, https://doi.org/10.5194/hess-24-3033-2020, https://doi.org/10.5194/hess-24-3033-2020, 2020
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The water mass variation at and below the land surface is a major component of the water cycle that was first estimated using GRACE observations (2002–2017). Our analysis shows the advantages of the use of satellite observation for precipitation and evapotranspiration along with river discharge measurement to perform an indirect and coherent reconstruction of this water component estimate over longer time periods.
Bertrand Bonan, Clément Albergel, Yongjun Zheng, Alina Lavinia Barbu, David Fairbairn, Simon Munier, and Jean-Christophe Calvet
Hydrol. Earth Syst. Sci., 24, 325–347, https://doi.org/10.5194/hess-24-325-2020, https://doi.org/10.5194/hess-24-325-2020, 2020
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This paper introduces an ensemble square root filter (EnSRF), a deterministic ensemble Kalman filter, for jointly assimilating observations of the surface soil moisture and leaf area index in the Land Data Assimilation System LDAS-Monde. LDAS-Monde constrains the Interaction between Soil, Biosphere and Atmosphere (ISBA) land surface model to improve the reanalysis of land surface variables. EnSRF is compared with the simplified extended Kalman filter over the European Mediterranean region.
Nathalie Folton, Eric Martin, Patrick Arnaud, Pierre L'Hermite, and Mathieu Tolsa
Hydrol. Earth Syst. Sci., 23, 2699–2714, https://doi.org/10.5194/hess-23-2699-2019, https://doi.org/10.5194/hess-23-2699-2019, 2019
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The long-term study of precipitation, flows, flood or drought mechanisms, in the Réal Collobrier research Watershed, located in South-East France, in the Mediterranean forest, improves knowledge of the water cycle and is unique tool for understanding of how catchments function. This study shows a small decrease in rainfall and a marked tendency towards a decrease in the water resources of the catchment in response to climate trends, with a consistent increase in drought severity and duration.
Sibo Zhang, Catherine Meurey, and Jean-Christophe Calvet
Atmos. Chem. Phys., 19, 5005–5020, https://doi.org/10.5194/acp-19-5005-2019, https://doi.org/10.5194/acp-19-5005-2019, 2019
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In situ rain temperature measurements are rare. Soil moisture and soil temperature observations in southern France are used to assess the cooling effects on soils of rainfall events. The rainwater temperature is estimated using observed changes of topsoil volumetric soil moisture and soil temperature in response to the rainfall event. The obtained rain temperature estimates are generally lower than the ambient air temperatures, wet-bulb temperatures, and topsoil temperatures.
Gerhard Krinner, Chris Derksen, Richard Essery, Mark Flanner, Stefan Hagemann, Martyn Clark, Alex Hall, Helmut Rott, Claire Brutel-Vuilmet, Hyungjun Kim, Cécile B. Ménard, Lawrence Mudryk, Chad Thackeray, Libo Wang, Gabriele Arduini, Gianpaolo Balsamo, Paul Bartlett, Julia Boike, Aaron Boone, Frédérique Chéruy, Jeanne Colin, Matthias Cuntz, Yongjiu Dai, Bertrand Decharme, Jeff Derry, Agnès Ducharne, Emanuel Dutra, Xing Fang, Charles Fierz, Josephine Ghattas, Yeugeniy Gusev, Vanessa Haverd, Anna Kontu, Matthieu Lafaysse, Rachel Law, Dave Lawrence, Weiping Li, Thomas Marke, Danny Marks, Martin Ménégoz, Olga Nasonova, Tomoko Nitta, Masashi Niwano, John Pomeroy, Mark S. Raleigh, Gerd Schaedler, Vladimir Semenov, Tanya G. Smirnova, Tobias Stacke, Ulrich Strasser, Sean Svenson, Dmitry Turkov, Tao Wang, Nander Wever, Hua Yuan, Wenyan Zhou, and Dan Zhu
Geosci. Model Dev., 11, 5027–5049, https://doi.org/10.5194/gmd-11-5027-2018, https://doi.org/10.5194/gmd-11-5027-2018, 2018
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This paper provides an overview of a coordinated international experiment to determine the strengths and weaknesses in how climate models treat snow. The models will be assessed at point locations using high-quality reference measurements and globally using satellite-derived datasets. How well climate models simulate snow-related processes is important because changing snow cover is an important part of the global climate system and provides an important freshwater resource for human use.
Clement Albergel, Emanuel Dutra, Simon Munier, Jean-Christophe Calvet, Joaquin Munoz-Sabater, Patricia de Rosnay, and Gianpaolo Balsamo
Hydrol. Earth Syst. Sci., 22, 3515–3532, https://doi.org/10.5194/hess-22-3515-2018, https://doi.org/10.5194/hess-22-3515-2018, 2018
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ECMWF recently released the first 7-year segment of its latest atmospheric reanalysis: ERA-5 (2010–2016). ERA-5 has important changes relative to ERA-Interim including higher spatial and temporal resolutions as well as a more recent model and data assimilation system. ERA-5 is foreseen to replace ERA-Interim reanalysis. One of the main goals of this study is to assess whether ERA-5 can enhance the simulation performances with respect to ERA-Interim when it is used to force a land surface model.
Emiliano Gelati, Bertrand Decharme, Jean-Christophe Calvet, Marie Minvielle, Jan Polcher, David Fairbairn, and Graham P. Weedon
Hydrol. Earth Syst. Sci., 22, 2091–2115, https://doi.org/10.5194/hess-22-2091-2018, https://doi.org/10.5194/hess-22-2091-2018, 2018
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We compared land surface model simulations forced by several meteorological datasets with observations over the Euro-Mediterranean area, for the 1979–2012 period. Precipitation was the most uncertain forcing variable. The impacts of forcing uncertainty were larger on the mean and standard deviation rather than the timing, shape and inter-annual variability of simulated discharge. Simulated leaf area index and surface soil moisture were relatively insensitive to these uncertainties.
Sibo Zhang, Jean-Christophe Calvet, José Darrozes, Nicolas Roussel, Frédéric Frappart, and Gilles Bouhours
Hydrol. Earth Syst. Sci., 22, 1931–1946, https://doi.org/10.5194/hess-22-1931-2018, https://doi.org/10.5194/hess-22-1931-2018, 2018
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Surface soil moisture was retrieved from a grassland site in southwestern France using the GNSS-IR technique. In order to efficiently limit the impact of perturbing vegetation effects, the grass growth period and the senescence period are treated separately. While the vegetation biomass effect can be corrected for, the litter water interception influences the observations and cannot be easily accounted for.
Roland Séférian, Sunghye Baek, Olivier Boucher, Jean-Louis Dufresne, Bertrand Decharme, David Saint-Martin, and Romain Roehrig
Geosci. Model Dev., 11, 321–338, https://doi.org/10.5194/gmd-11-321-2018, https://doi.org/10.5194/gmd-11-321-2018, 2018
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This paper presents a new interactive scheme for ocean surface albedo suited for the current generation of Earth system models. This scheme computes the ocean surface albedo accounting for the spectral dependence (across a range of wavelengths between 200 and 4000 nm), the characteristics of incident solar radiation (direct of diffuse), the effects of surface winds, chlorophyll content and whitecaps in addition to the canonical solar zenith angle dependence.
Aurore Voldoire, Bertrand Decharme, Joris Pianezze, Cindy Lebeaupin Brossier, Florence Sevault, Léo Seyfried, Valérie Garnier, Soline Bielli, Sophie Valcke, Antoinette Alias, Mickael Accensi, Fabrice Ardhuin, Marie-Noëlle Bouin, Véronique Ducrocq, Stéphanie Faroux, Hervé Giordani, Fabien Léger, Patrick Marsaleix, Romain Rainaud, Jean-Luc Redelsperger, Evelyne Richard, and Sébastien Riette
Geosci. Model Dev., 10, 4207–4227, https://doi.org/10.5194/gmd-10-4207-2017, https://doi.org/10.5194/gmd-10-4207-2017, 2017
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This study presents the principles of the new coupling interface based on the SURFEX multi-surface model and the OASIS3-MCT coupler. As SURFEX can be plugged into several atmospheric models, it can be used in a wide range of applications. The objective of this development is to build and share a common structure for the atmosphere–surface coupling of all these applications, involving on the one hand atmospheric models and on the other hand ocean, ice, hydrology, and wave models.
Clément Albergel, Simon Munier, Delphine Jennifer Leroux, Hélène Dewaele, David Fairbairn, Alina Lavinia Barbu, Emiliano Gelati, Wouter Dorigo, Stéphanie Faroux, Catherine Meurey, Patrick Le Moigne, Bertrand Decharme, Jean-Francois Mahfouf, and Jean-Christophe Calvet
Geosci. Model Dev., 10, 3889–3912, https://doi.org/10.5194/gmd-10-3889-2017, https://doi.org/10.5194/gmd-10-3889-2017, 2017
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LDAS-Monde, a global land data assimilation system, is applied over Europe and the Mediterranean basin to increase monitoring accuracy for land surface variables. It is able to ingest information from satellite-derived surface soil moisture (SSM) and leaf area index (LAI) observations to constrain the ISBA land surface model coupled with the CTRIP continental hydrological system. Assimilation of SSM and LAI leads to a better representation of evapotranspiration and gross primary production.
Hélène Dewaele, Simon Munier, Clément Albergel, Carole Planque, Nabil Laanaia, Dominique Carrer, and Jean-Christophe Calvet
Hydrol. Earth Syst. Sci., 21, 4861–4878, https://doi.org/10.5194/hess-21-4861-2017, https://doi.org/10.5194/hess-21-4861-2017, 2017
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Soil maximum available water content (MaxAWC) is a key parameter in land surface models. Being difficult to measure, this parameter is usually unavailable. A 15-year time series of satellite-derived observations of leaf area index (LAI) is used to retrieve MaxAWC for rainfed straw cereals over France. Disaggregated LAI is sequentially assimilated into the ISBA LSM. MaxAWC is estimated minimising LAI analyses increments. Annual maximum LAI observations correlate with the MaxAWC estimates.
Sibo Zhang, Nicolas Roussel, Karen Boniface, Minh Cuong Ha, Frédéric Frappart, José Darrozes, Frédéric Baup, and Jean-Christophe Calvet
Hydrol. Earth Syst. Sci., 21, 4767–4784, https://doi.org/10.5194/hess-21-4767-2017, https://doi.org/10.5194/hess-21-4767-2017, 2017
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GNSS SNR data were obtained from an intensively cultivated wheat field in southwestern France. The data were used to retrieve soil moisture and vegetation characteristics during the growing period of wheat. Vegetation growth broke up the constant height assumption used in soil moisture retrieval algorithms. Soil moisture could not be retrieved after wheat tillering. A new algorithm based on a wavelet analysis was implemented and used to retrieve vegetation height.
Mathieu Barrere, Florent Domine, Bertrand Decharme, Samuel Morin, Vincent Vionnet, and Matthieu Lafaysse
Geosci. Model Dev., 10, 3461–3479, https://doi.org/10.5194/gmd-10-3461-2017, https://doi.org/10.5194/gmd-10-3461-2017, 2017
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Global warming projections still suffer from a limited representation of the permafrost–carbon feedback. This study assesses the capacity of snow-soil coupled models to simulate the permafrost thermal regime at Bylot Island, a high Arctic site. Significant flaws are found in the description of Arctic snow properties, resulting in erroneous heat transfers between the soil and the snow in simulations. Improved snow schemes are needed to accurately predict the future of permafrost.
Jaap Schellekens, Emanuel Dutra, Alberto Martínez-de la Torre, Gianpaolo Balsamo, Albert van Dijk, Frederiek Sperna Weiland, Marie Minvielle, Jean-Christophe Calvet, Bertrand Decharme, Stephanie Eisner, Gabriel Fink, Martina Flörke, Stefanie Peßenteiner, Rens van Beek, Jan Polcher, Hylke Beck, René Orth, Ben Calton, Sophia Burke, Wouter Dorigo, and Graham P. Weedon
Earth Syst. Sci. Data, 9, 389–413, https://doi.org/10.5194/essd-9-389-2017, https://doi.org/10.5194/essd-9-389-2017, 2017
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The dataset combines the results of 10 global models that describe the global continental water cycle. The data can be used as input for water resources studies, flood frequency studies etc. at different scales from continental to medium-scale catchments. We compared the results with earth observation data and conclude that most uncertainties are found in snow-dominated regions and tropical rainforest and monsoon regions.
Adrien Napoly, Aaron Boone, Patrick Samuelsson, Stefan Gollvik, Eric Martin, Roland Seferian, Dominique Carrer, Bertrand Decharme, and Lionel Jarlan
Geosci. Model Dev., 10, 1621–1644, https://doi.org/10.5194/gmd-10-1621-2017, https://doi.org/10.5194/gmd-10-1621-2017, 2017
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This paper is the second part of a new parameterization for canopy representation that has been developed in the Interactions between the Surface Biosphere Atmosphere model (ISBA). A module for the explicit representation of the litter bellow forest canopies has been added. Then, the first evaluation of these new developments is performed at local scale among three well-instrumented sites and then at the global scale using the FLUXNET network.
David Fairbairn, Alina Lavinia Barbu, Adrien Napoly, Clément Albergel, Jean-François Mahfouf, and Jean-Christophe Calvet
Hydrol. Earth Syst. Sci., 21, 2015–2033, https://doi.org/10.5194/hess-21-2015-2017, https://doi.org/10.5194/hess-21-2015-2017, 2017
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This study assesses the impact on river discharge simulations over France of assimilating ASCAT-derived surface soil moisture (SSM) and leaf area index (LAI) observations into the ISBA land surface model. Wintertime LAI has a notable impact on river discharge. SSM assimilation degrades river discharge simulations. This is caused by limitations in the simplified versions of the Kalman filter and ISBA model used in this study. Implementing an observation operator for ASCAT is needed.
Aaron Boone, Patrick Samuelsson, Stefan Gollvik, Adrien Napoly, Lionel Jarlan, Eric Brun, and Bertrand Decharme
Geosci. Model Dev., 10, 843–872, https://doi.org/10.5194/gmd-10-843-2017, https://doi.org/10.5194/gmd-10-843-2017, 2017
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Land surface models describe the different exchanges of mass, heat, and momentum with the atmosphere. They are pushing towards improved realism owing to an increasing number of in situ observations, improving satellite data-sets and increasing computing resources. As a part of the trend, a new parameterization has been developed called the Interactions between the Surface Biosphere Atmosphere-Multi-Energy Budget model. This technical paper describes model equations and theoretical background.
Jean-Christophe Calvet, Noureddine Fritz, Christine Berne, Bruno Piguet, William Maurel, and Catherine Meurey
SOIL, 2, 615–629, https://doi.org/10.5194/soil-2-615-2016, https://doi.org/10.5194/soil-2-615-2016, 2016
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Soil thermal conductivity in wet conditions can be retrieved together with the soil quartz content using a reverse modelling technique based on sub-hourly soil temperature observations at three depths below the soil surface.
A pedotransfer function is proposed for quartz, for the considered region in France.
Gravels have a major impact on soil thermal conductivity, and omitting the soil organic matter information tends to enhance this impact.
Wenli Wang, Annette Rinke, John C. Moore, Duoying Ji, Xuefeng Cui, Shushi Peng, David M. Lawrence, A. David McGuire, Eleanor J. Burke, Xiaodong Chen, Bertrand Decharme, Charles Koven, Andrew MacDougall, Kazuyuki Saito, Wenxin Zhang, Ramdane Alkama, Theodore J. Bohn, Philippe Ciais, Christine Delire, Isabelle Gouttevin, Tomohiro Hajima, Gerhard Krinner, Dennis P. Lettenmaier, Paul A. Miller, Benjamin Smith, Tetsuo Sueyoshi, and Artem B. Sherstiukov
The Cryosphere, 10, 1721–1737, https://doi.org/10.5194/tc-10-1721-2016, https://doi.org/10.5194/tc-10-1721-2016, 2016
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The winter snow insulation is a key process for air–soil temperature coupling and is relevant for permafrost simulations. Differences in simulated air–soil temperature relationships and their modulation by climate conditions are found to be related to the snow model physics. Generally, models with better performance apply multilayer snow schemes.
Roland Séférian, Christine Delire, Bertrand Decharme, Aurore Voldoire, David Salas y Melia, Matthieu Chevallier, David Saint-Martin, Olivier Aumont, Jean-Christophe Calvet, Dominique Carrer, Hervé Douville, Laurent Franchistéguy, Emilie Joetzjer, and Séphane Sénési
Geosci. Model Dev., 9, 1423–1453, https://doi.org/10.5194/gmd-9-1423-2016, https://doi.org/10.5194/gmd-9-1423-2016, 2016
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This paper presents the first IPCC-class Earth system model developed at Centre National de Recherches Météorologiques (CNRM-ESM1). We detail how the various carbon reservoirs were initialized and analyze the behavior of the carbon cycle and its prominent physical drivers, comparing model results to the most up-to-date climate and carbon cycle dataset over the latest decades.
Bertrand Decharme, Eric Brun, Aaron Boone, Christine Delire, Patrick Le Moigne, and Samuel Morin
The Cryosphere, 10, 853–877, https://doi.org/10.5194/tc-10-853-2016, https://doi.org/10.5194/tc-10-853-2016, 2016
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We analyze how snowpack processes and soil properties impact the soil temperature profiles over northern Eurasian regions using a land surface model. A correct representation of snow compaction is critical in winter while snow albedo is dominant in spring. In summer, soil temperature is more affected by soil organic carbon content, which strongly influences the maximum thaw depth in permafrost regions. This work was done to improve the representation of boreal region processes in climate models.
A. Khalifa, M. Marchetti, L. Bouilloud, E. Martin, M. Bues, and K. Chancibaut
Geosci. Model Dev., 9, 547–565, https://doi.org/10.5194/gmd-9-547-2016, https://doi.org/10.5194/gmd-9-547-2016, 2016
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An experimental study was conducted to quantify the anthropic energy flux of traffic impact on RST in the winter season. It indicated an RST increase by 1 °C to 3 °C with respect to the absence of traffic. Additional work was undertaken so as to evaluate to which extent an accurate description of traffic might improve the TEB numerical model when dedicated to RST simulations. Two approaches to traffic integration in this model were detailed and tested.
W. Wang, A. Rinke, J. C. Moore, X. Cui, D. Ji, Q. Li, N. Zhang, C. Wang, S. Zhang, D. M. Lawrence, A. D. McGuire, W. Zhang, C. Delire, C. Koven, K. Saito, A. MacDougall, E. Burke, and B. Decharme
The Cryosphere, 10, 287–306, https://doi.org/10.5194/tc-10-287-2016, https://doi.org/10.5194/tc-10-287-2016, 2016
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We use a model-ensemble approach for simulating permafrost on the Tibetan Plateau. We identify the uncertainties across models (state-of-the-art land surface models) and across methods (most commonly used methods to define permafrost).
We differentiate between uncertainties stemming from climatic driving data or from physical process parameterization, and show how these uncertainties vary seasonally and inter-annually, and how estimates are subject to the definition of permafrost used.
We differentiate between uncertainties stemming from climatic driving data or from physical process parameterization, and show how these uncertainties vary seasonally and inter-annually, and how estimates are subject to the definition of permafrost used.
S. Peng, P. Ciais, G. Krinner, T. Wang, I. Gouttevin, A. D. McGuire, D. Lawrence, E. Burke, X. Chen, B. Decharme, C. Koven, A. MacDougall, A. Rinke, K. Saito, W. Zhang, R. Alkama, T. J. Bohn, C. Delire, T. Hajima, D. Ji, D. P. Lettenmaier, P. A. Miller, J. C. Moore, B. Smith, and T. Sueyoshi
The Cryosphere, 10, 179–192, https://doi.org/10.5194/tc-10-179-2016, https://doi.org/10.5194/tc-10-179-2016, 2016
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Soil temperature change is a key indicator of the dynamics of permafrost. Using nine process-based ecosystem models with permafrost processes, a large spread of soil temperature trends across the models. Air temperature and longwave downward radiation are the main drivers of soil temperature trends. Based on an emerging observation constraint method, the total boreal near-surface permafrost area decrease comprised between 39 ± 14 × 103 and 75 ± 14 × 103 km2 yr−1 from 1960 to 2000.
D. Fairbairn, A. L. Barbu, J.-F. Mahfouf, J.-C. Calvet, and E. Gelati
Hydrol. Earth Syst. Sci., 19, 4811–4830, https://doi.org/10.5194/hess-19-4811-2015, https://doi.org/10.5194/hess-19-4811-2015, 2015
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The ensemble Kalman filter (EnKF) and simplified extended Kalman filter (SEKF) root-zone soil moisture analyses are compared when assimilating in situ surface observations. In the synthetic experiments, the EnKF performs best because it can stochastically capture the errors in the precipitation. The two methods perform similarly in the real experiments. During the summer period, both methods perform poorly as a result of nonlinearities in the land surface model.
M. A. Rawlins, A. D. McGuire, J. S. Kimball, P. Dass, D. Lawrence, E. Burke, X. Chen, C. Delire, C. Koven, A. MacDougall, S. Peng, A. Rinke, K. Saito, W. Zhang, R. Alkama, T. J. Bohn, P. Ciais, B. Decharme, I. Gouttevin, T. Hajima, D. Ji, G. Krinner, D. P. Lettenmaier, P. Miller, J. C. Moore, B. Smith, and T. Sueyoshi
Biogeosciences, 12, 4385–4405, https://doi.org/10.5194/bg-12-4385-2015, https://doi.org/10.5194/bg-12-4385-2015, 2015
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We used outputs from nine models to better understand land-atmosphere CO2 exchanges across Northern Eurasia over the period 1960-1990. Model estimates were assessed against independent ground and satellite measurements. We find that the models show a weakening of the CO2 sink over time; the models tend to overestimate respiration, causing an underestimate in NEP; the model range in regional NEP is twice the multimodel mean. Residence time for soil carbon decreased, amid a gain in carbon storage.
S. Garrigues, A. Olioso, J. C. Calvet, E. Martin, S. Lafont, S. Moulin, A. Chanzy, O. Marloie, S. Buis, V. Desfonds, N. Bertrand, and D. Renard
Hydrol. Earth Syst. Sci., 19, 3109–3131, https://doi.org/10.5194/hess-19-3109-2015, https://doi.org/10.5194/hess-19-3109-2015, 2015
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Land surface model simulations of evapotranspiration are assessed over a 12-year Mediterranean crop succession. Evapotranspiration mainly results from soil evaporation when it is simulated over a Mediterranean crop succession. This leads to a high sensitivity to the soil parameters. Errors on soil hydraulic properties can lead to a large bias in cumulative evapotranspiration over a long period of time. Accounting for uncertainties in soil properties is essential for land surface modelling.
E. Joetzjer, C. Delire, H. Douville, P. Ciais, B. Decharme, D. Carrer, H. Verbeeck, M. De Weirdt, and D. Bonal
Geosci. Model Dev., 8, 1709–1727, https://doi.org/10.5194/gmd-8-1709-2015, https://doi.org/10.5194/gmd-8-1709-2015, 2015
N. Canal, J.-C. Calvet, B. Decharme, D. Carrer, S. Lafont, and G. Pigeon
Hydrol. Earth Syst. Sci., 18, 4979–4999, https://doi.org/10.5194/hess-18-4979-2014, https://doi.org/10.5194/hess-18-4979-2014, 2014
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Regional French agricultural yield statistics are used to benchmark root water uptake representations in the ISBA-A-gs model. Key model parameters governing the inter-annual variability of the simulated biomass are retrieved. A complex multi-layer soil hydrology model does not outperform a simple bulk root-zone reservoir approach. This could be explained by missing processes/information in the model such as hydraulic redistribution and detailed soil properties.
E. Joetzjer, C. Delire, H. Douville, P. Ciais, B. Decharme, R. Fisher, B. Christoffersen, J. C. Calvet, A. C. L. da Costa, L. V. Ferreira, and P. Meir
Geosci. Model Dev., 7, 2933–2950, https://doi.org/10.5194/gmd-7-2933-2014, https://doi.org/10.5194/gmd-7-2933-2014, 2014
F. Habets, E. Philippe, E. Martin, C. H. David, and F. Leseur
Hydrol. Earth Syst. Sci., 18, 4207–4222, https://doi.org/10.5194/hess-18-4207-2014, https://doi.org/10.5194/hess-18-4207-2014, 2014
X. Ceamanos, D. Carrer, and J.-L. Roujean
Atmos. Chem. Phys., 14, 8209–8232, https://doi.org/10.5194/acp-14-8209-2014, https://doi.org/10.5194/acp-14-8209-2014, 2014
M. Balzarolo, S. Boussetta, G. Balsamo, A. Beljaars, F. Maignan, J.-C. Calvet, S. Lafont, A. Barbu, B. Poulter, F. Chevallier, C. Szczypta, and D. Papale
Biogeosciences, 11, 2661–2678, https://doi.org/10.5194/bg-11-2661-2014, https://doi.org/10.5194/bg-11-2661-2014, 2014
C. Szczypta, J.-C. Calvet, F. Maignan, W. Dorigo, F. Baret, and P. Ciais
Geosci. Model Dev., 7, 931–946, https://doi.org/10.5194/gmd-7-931-2014, https://doi.org/10.5194/gmd-7-931-2014, 2014
V. Vionnet, E. Martin, V. Masson, G. Guyomarc'h, F. Naaim-Bouvet, A. Prokop, Y. Durand, and C. Lac
The Cryosphere, 8, 395–415, https://doi.org/10.5194/tc-8-395-2014, https://doi.org/10.5194/tc-8-395-2014, 2014
M. Parrens, J.-F. Mahfouf, A. L. Barbu, and J.-C. Calvet
Hydrol. Earth Syst. Sci., 18, 673–689, https://doi.org/10.5194/hess-18-673-2014, https://doi.org/10.5194/hess-18-673-2014, 2014
A. L. Barbu, J.-C. Calvet, J.-F. Mahfouf, and S. Lafont
Hydrol. Earth Syst. Sci., 18, 173–192, https://doi.org/10.5194/hess-18-173-2014, https://doi.org/10.5194/hess-18-173-2014, 2014
E. Joetzjer, H. Douville, C. Delire, P. Ciais, B. Decharme, and S. Tyteca
Hydrol. Earth Syst. Sci., 17, 4885–4895, https://doi.org/10.5194/hess-17-4885-2013, https://doi.org/10.5194/hess-17-4885-2013, 2013
R. Alkama, L. Marchand, A. Ribes, and B. Decharme
Hydrol. Earth Syst. Sci., 17, 2967–2979, https://doi.org/10.5194/hess-17-2967-2013, https://doi.org/10.5194/hess-17-2967-2013, 2013
V. Masson, P. Le Moigne, E. Martin, S. Faroux, A. Alias, R. Alkama, S. Belamari, A. Barbu, A. Boone, F. Bouyssel, P. Brousseau, E. Brun, J.-C. Calvet, D. Carrer, B. Decharme, C. Delire, S. Donier, K. Essaouini, A.-L. Gibelin, H. Giordani, F. Habets, M. Jidane, G. Kerdraon, E. Kourzeneva, M. Lafaysse, S. Lafont, C. Lebeaupin Brossier, A. Lemonsu, J.-F. Mahfouf, P. Marguinaud, M. Mokhtari, S. Morin, G. Pigeon, R. Salgado, Y. Seity, F. Taillefer, G. Tanguy, P. Tulet, B. Vincendon, V. Vionnet, and A. Voldoire
Geosci. Model Dev., 6, 929–960, https://doi.org/10.5194/gmd-6-929-2013, https://doi.org/10.5194/gmd-6-929-2013, 2013
R. Amri, M. Zribi, Z. Lili-Chabaane, C. Szczypta, J. C. Calvet, and G. Boulet
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-10-8117-2013, https://doi.org/10.5194/hessd-10-8117-2013, 2013
Revised manuscript not accepted
S. Faroux, A. T. Kaptué Tchuenté, J.-L. Roujean, V. Masson, E. Martin, and P. Le Moigne
Geosci. Model Dev., 6, 563–582, https://doi.org/10.5194/gmd-6-563-2013, https://doi.org/10.5194/gmd-6-563-2013, 2013
Related subject area
Biogeosciences
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
Lambda-PFLOTRAN 1.0: Workflow for Incorporating Organic Matter Chemistry Informed by Ultra High Resolution Mass Spectrometry into Biogeochemical Modeling
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water, and nitrogen perturbations
A novel Eulerian model based on central moments to simulate age and reactivity continua interacting with mixing processes
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO, and NH3 emissions from enhanced rock weathering with croplands
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
Modeling of non-structural carbohydrate dynamics by the spatially explicit individual-based dynamic global vegetation model SEIB-DGVM (SEIB-DGVM-NSC version 1.0)
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
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In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
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The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Juliette Bernard, Marielle Saunois, Elodie Salmon, Philippe Ciais, Shushi Peng, Antoine Berchet, Penélope Serrano-Ortiz, Palingamoorthy Gnanamoorthy, and Joachim Jansen
EGUsphere, https://doi.org/10.5194/egusphere-2024-1331, https://doi.org/10.5194/egusphere-2024-1331, 2024
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Despite their importance, uncertainties remain in estimating methane emissions from wetlands. Here, a simplified model that operates at a global scale is developed. Taking advantage of advances in remote sensing data and in situ observations, the model effectively reproduces the spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights for sensitivity analyses.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie Fisher, and Harrie-Jan Hendricks Franssen
EGUsphere, https://doi.org/10.5194/egusphere-2024-978, https://doi.org/10.5194/egusphere-2024-978, 2024
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Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land Surface Models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes and variability of carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research on these processes.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-34, https://doi.org/10.5194/gmd-2024-34, 2024
Revised manuscript accepted for GMD
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The newly developed Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate respiration and the resulting biogeochemistry. Lambda-PFLOTRAN is a python-based workflow via a Jupyter Notebook interface, that digests raw organic matter chemistry data via FTICR-MS, develops the representative reaction network, and completes a biogeochemical simulation with the open source, parallel reactive flow and transport code PFLOTRAN.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
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This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
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We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
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Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
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The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
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We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
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Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
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We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
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Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
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In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
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Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
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This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
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Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
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Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
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Short summary
This paper investigates the impacts of uncertainties in the climate, the vegetation dynamic, the soil properties and the cropland management on the simulation of evapotranspiration from the ISBA-A-gs land surface model over a 12-year Mediterranean crop succession. It mainly shows that errors in the soil parameters and the lack of irrigation in the simulation have the largest influence on evapotranspiration compared to the uncertainties in the climate and the vegetation dynamic.
This paper investigates the impacts of uncertainties in the climate, the vegetation dynamic, the...
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