Articles | Volume 7, issue 4
https://doi.org/10.5194/gmd-7-1251-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-7-1251-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper
| 
03 Jul 2014
Model description paper |
| 03 Jul 2014
Analysing Amazonian forest productivity using a new individual and trait-based model (TFS v.1)
N. M. Fyllas
Ecology and Global Change, School of Geography, University of Leeds, UK
currently at: Department of Ecology & Systematics, Faculty of Biology, University of Athens, Athens, Greece
E. Gloor
Ecology and Global Change, School of Geography, University of Leeds, UK
L. M. Mercado
School of Geography, University of Exeter, Exeter, UK
S. Sitch
School of Geography, University of Exeter, Exeter, UK
C. A. Quesada
Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
T. F. Domingues
School of GeoSciences, University of Edinburgh, Edinburgh, Scotland, UK
D. R. Galbraith
Ecology and Global Change, School of Geography, University of Leeds, UK
A. Torre-Lezama
Instituto de Investigaciones para el Desarrollo, Forestal Facultad de Ciencias Forestales y Ambientales, Universidad de Los Andes, Merida, Venezuela
E. Vilanova
Instituto de Investigaciones para el Desarrollo, Forestal Facultad de Ciencias Forestales y Ambientales, Universidad de Los Andes, Merida, Venezuela
H. Ramírez-Angulo
Instituto de Investigaciones para el Desarrollo, Forestal Facultad de Ciencias Forestales y Ambientales, Universidad de Los Andes, Merida, Venezuela
N. Higuchi
Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil
D. A. Neill
Department of Wildlife Conservation and Management, Universidad Estatal Amazónica, Puyo, Pastaza, Ecuador
M. Silveira
Universidade Federal do Acre, Rio Branco, Brazil
L. Ferreira
Museu Paraense Emílio Goeldi, Belém, Brazil
G. A. Aymard C.
UNELLEZ-Guanare, Programa de Ciencias del Agro y el Mar, Herbario Universitario (PORT), estado Portuguesa, Venezuela
Y. Malhi
Environmental Change Institute, School of Geography and the Environment, University of Oxford, Oxford, UK
O. L. Phillips
Ecology and Global Change, School of Geography, University of Leeds, UK
Centre for Tropical Environmental and Sustainability Science (TESS) and School of Marine and Tropical Biology, James Cook University, Cairns, Australia
Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, UK
Related authors
Bradley O. Christoffersen, Manuel Gloor, Sophie Fauset, Nikolaos M. Fyllas, David R. Galbraith, Timothy R. Baker, Bart Kruijt, Lucy Rowland, Rosie A. Fisher, Oliver J. Binks, Sanna Sevanto, Chonggang Xu, Steven Jansen, Brendan Choat, Maurizio Mencuccini, Nate G. McDowell, and Patrick Meir
Geosci. Model Dev., 9, 4227–4255, https://doi.org/10.5194/gmd-9-4227-2016, https://doi.org/10.5194/gmd-9-4227-2016, 2016
Short summary
Short summary
We developed a plant hydraulics model for tropical forests based on established plant physiological theory, and parameterized it by conducting a pantropical hydraulic trait survey. We show that a substantial amount of trait diversity can be represented in the model by a reduced set of trait dimensions. The fully parameterized model is able capture tree-level variation in water status and improves simulations of total ecosystem transpiration, showing how to incorporate hydraulic traits in models.
E. M. Veenendaal, M. Torello-Raventos, T. R. Feldpausch, T. F. Domingues, F. Gerard, F. Schrodt, G. Saiz, C. A. Quesada, G. Djagbletey, A. Ford, J. Kemp, B. S. Marimon, B. H. Marimon-Junior, E. Lenza, J. A. Ratter, L. Maracahipes, D. Sasaki, B. Sonké, L. Zapfack, D. Villarroel, M. Schwarz, F. Yoko Ishida, M. Gilpin, G. B. Nardoto, K. Affum-Baffoe, L. Arroyo, K. Bloomfield, G. Ceca, H. Compaore, K. Davies, A. Diallo, N. M. Fyllas, J. Gignoux, F. Hien, M. Johnson, E. Mougin, P. Hiernaux, T. Killeen, D. Metcalfe, H. S. Miranda, M. Steininger, K. Sykora, M. I. Bird, J. Grace, S. Lewis, O. L. Phillips, and J. Lloyd
Biogeosciences, 12, 2927–2951, https://doi.org/10.5194/bg-12-2927-2015, https://doi.org/10.5194/bg-12-2927-2015, 2015
Short summary
Short summary
When nearby forest and savanna stands are compared, they are not as structurally different as first seems. Moreover, savanna-forest transition zones typically occur at higher rainfall for South America than for Africa but with coexistence confined to a well-defined edaphic-climate envelope. With interacting soil cation-soil water storage–precipitations effects on canopy cover also observed we argue that both soils and climate influence the location of the two major tropical vegetation types.
Ingrid Chanca, Ingeborg Levin, Susan Trumbore, Kita Macario, Jost Lavric, Carlos Alberto Quesada, Alessandro Carioca de Araújo, Cléo Quaresma Dias Júnior, Hella van Asperen, Samuel Hammer, and Carlos Sierra
EGUsphere, https://doi.org/10.5194/egusphere-2024-883, https://doi.org/10.5194/egusphere-2024-883, 2024
Short summary
Short summary
Assessing the net carbon (C) budget of the Amazon entails considering the magnitude and timing of C absorption and losses through respiration (transit time of C). Radiocarbon-based estimates of the transit time of C in the Amazon Tall Tower Observatory (ATTO) suggest a doubling of the transit time from 6 ± 2 years and 18 ± 5 years (October 2019 and December 2021, respectively). This variability indicates that only a fraction of newly fixed C can be stored for decades or longer.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-6, https://doi.org/10.5194/gmd-2024-6, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
This study introduces a new scheme to simulate surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal response to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Emily Dowd, Alistair J. Manning, Bryn Orth-Lashley, Marianne Girard, James France, Rebecca E. Fisher, Dave Lowry, Mathias Lanoisellé, Joseph R. Pitt, Kieran M. Stanley, Simon O'Doherty, Dickon Young, Glen Thistlethwaite, Martyn P. Chipperfield, Emanuel Gloor, and Chris Wilson
Atmos. Meas. Tech., 17, 1599–1615, https://doi.org/10.5194/amt-17-1599-2024, https://doi.org/10.5194/amt-17-1599-2024, 2024
Short summary
Short summary
We provide the first validation of the satellite-derived emission estimates using surface-based mobile greenhouse gas surveys of an active gas leak detected near Cheltenham, UK. GHGSat’s emission estimates broadly agree with the surface-based mobile survey and steps were taken to fix the leak, highlighting the importance of satellite data in identifying emissions and helping to reduce our human impact on climate change.
Flossie Brown, Gerd Folberth, Stephen Sitch, Paulo Artaxo, Marijn Bauters, Pascal Boeckx, Alexander W. Cheesman, Matteo Detto, Ninong Komala, Luciana Rizzo, Nestor Rojas, Ines dos Santos Vieira, Steven Turnock, Hans Verbeeck, and Alfonso Zambrano
EGUsphere, https://doi.org/10.5194/egusphere-2023-2937, https://doi.org/10.5194/egusphere-2023-2937, 2024
Short summary
Short summary
Ozone is a pollutant that is detrimental to human and plant health. Ozone monitoring sites in the tropics are limited, so models are often used to assess ozone exposure. We use measurements from the tropics to evaluate ozone from the UK Earth system model, UKESM1. UKESM1 is able to capture the behaviour of ozone in the tropics, except in Southeast Asia. Results demonstrate that UKESM1 can be used for health assessments and highlights areas that would benefit from further observations.
João Paulo Darela-Filho, Anja Rammig, Katrin Fleischer, Tatiana Reichert, Laynara Figueiredo Lugli, Carlos Alberto Quesada, Luis Carlos Colocho Hurtarte, Mateus Dantas de Paula, and David M. Lapola
Earth Syst. Sci. Data, 16, 715–729, https://doi.org/10.5194/essd-16-715-2024, https://doi.org/10.5194/essd-16-715-2024, 2024
Short summary
Short summary
Phosphorus (P) is crucial for plant growth, and scientists have created models to study how it interacts with carbon cycle in ecosystems. To apply these models, it is important to know the distribution of phosphorus in soil. In this study we estimated the distribution of phosphorus in the Amazon region. The results showed a clear gradient of soil development and P content. These maps can help improve ecosystem models and generate new hypotheses about phosphorus availability in the Amazon.
Wolfgang Alexander Obermeier, Clemens Schwingshackl, Ana Bastos, Giulia Conchedda, Thomas Gasser, Giacomo Grassi, Richard A. Houghton, Francesco Nicola Tubiello, Stephen Sitch, and Julia Pongratz
Earth Syst. Sci. Data, 16, 605–645, https://doi.org/10.5194/essd-16-605-2024, https://doi.org/10.5194/essd-16-605-2024, 2024
Short summary
Short summary
We provide and compare country-level estimates of land-use CO2 fluxes from a variety and large number of models, bottom-up estimates, and country reports for the period 1950–2021. Although net fluxes are small in many countries, they are often composed of large compensating emissions and removals. In many countries, the estimates agree well once their individual characteristics are accounted for, but in other countries, including some of the largest emitters, substantial uncertainties exist.
Luiz A. T. Machado, Jürgen Kesselmeier, Santiago Botia, Hella Van Asperen, Alessandro C. de Araújo, Paulo Artaxo, Achim Edtbauer, Rosa Ferreira, Hartwig Harder, Sam Jones, Cléo Q. Dias-Júnior, Guido G. Haytzmann, Carlos A. Quesada, Shujiro Komiya, Jost Lavric, Jos Lelieveld, Ingeborg Levin, Anke Nölscher, Eva Pfannerstill, Mira Pöhlker, Ulrich Pöschl, Akima Ringsdorf, Luciana Rizzo, Ana M. Yáñez-Serrano, Susan Trumbore, Wanda I. D. Valenti, Jordi Vila-Guerau de Arellano, David Walter, Jonathan Williams, Stefan Wolff, and Christopher Pöhlker
EGUsphere, https://doi.org/10.5194/egusphere-2023-2901, https://doi.org/10.5194/egusphere-2023-2901, 2024
Short summary
Short summary
Composite analysis of the gas concentration before and after rainfall, during the day and night, gives insight into the complex relationship between trace gas variability and precipitation. This analysis helps to understand the sources and sinks of trace gases within a forest ecosystem. It elucidates processes that are not discernible under undisturbed conditions and contributes to a deeper understanding of the trace gas life cycle and its intricate interactions with cloud dynamics in the Amazon
Pierre Friedlingstein, Michael O'Sullivan, Matthew W. Jones, Robbie M. Andrew, Dorothee C. E. Bakker, Judith Hauck, Peter Landschützer, Corinne Le Quéré, Ingrid T. Luijkx, Glen P. Peters, Wouter Peters, Julia Pongratz, Clemens Schwingshackl, Stephen Sitch, Josep G. Canadell, Philippe Ciais, Robert B. Jackson, Simone R. Alin, Peter Anthoni, Leticia Barbero, Nicholas R. Bates, Meike Becker, Nicolas Bellouin, Bertrand Decharme, Laurent Bopp, Ida Bagus Mandhara Brasika, Patricia Cadule, Matthew A. Chamberlain, Naveen Chandra, Thi-Tuyet-Trang Chau, Frédéric Chevallier, Louise P. Chini, Margot Cronin, Xinyu Dou, Kazutaka Enyo, Wiley Evans, Stefanie Falk, Richard A. Feely, Liang Feng, Daniel J. Ford, Thomas Gasser, Josefine Ghattas, Thanos Gkritzalis, Giacomo Grassi, Luke Gregor, Nicolas Gruber, Özgür Gürses, Ian Harris, Matthew Hefner, Jens Heinke, Richard A. Houghton, George C. Hurtt, Yosuke Iida, Tatiana Ilyina, Andrew R. Jacobson, Atul Jain, Tereza Jarníková, Annika Jersild, Fei Jiang, Zhe Jin, Fortunat Joos, Etsushi Kato, Ralph F. Keeling, Daniel Kennedy, Kees Klein Goldewijk, Jürgen Knauer, Jan Ivar Korsbakken, Arne Körtzinger, Xin Lan, Nathalie Lefèvre, Hongmei Li, Junjie Liu, Zhiqiang Liu, Lei Ma, Greg Marland, Nicolas Mayot, Patrick C. McGuire, Galen A. McKinley, Gesa Meyer, Eric J. Morgan, David R. Munro, Shin-Ichiro Nakaoka, Yosuke Niwa, Kevin M. O'Brien, Are Olsen, Abdirahman M. Omar, Tsuneo Ono, Melf Paulsen, Denis Pierrot, Katie Pocock, Benjamin Poulter, Carter M. Powis, Gregor Rehder, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Thais M. Rosan, Jörg Schwinger, Roland Séférian, T. Luke Smallman, Stephen M. Smith, Reinel Sospedra-Alfonso, Qing Sun, Adrienne J. Sutton, Colm Sweeney, Shintaro Takao, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Hiroyuki Tsujino, Francesco Tubiello, Guido R. van der Werf, Erik van Ooijen, Rik Wanninkhof, Michio Watanabe, Cathy Wimart-Rousseau, Dongxu Yang, Xiaojuan Yang, Wenping Yuan, Xu Yue, Sönke Zaehle, Jiye Zeng, and Bo Zheng
Earth Syst. Sci. Data, 15, 5301–5369, https://doi.org/10.5194/essd-15-5301-2023, https://doi.org/10.5194/essd-15-5301-2023, 2023
Short summary
Short summary
The Global Carbon Budget 2023 describes the methodology, main results, and data sets used to quantify the anthropogenic emissions of carbon dioxide (CO2) and their partitioning among the atmosphere, land ecosystems, and the ocean over the historical period (1750–2023). These living datasets are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Adriana Simonetti, Raquel Fernandes Araujo, Carlos Henrique Souza Celes, Flávia Ranara da Silva e Silva, Joaquim dos Santos, Niro Higuchi, Susan Trumbore, and Daniel Magnabosco Marra
Biogeosciences, 20, 3651–3666, https://doi.org/10.5194/bg-20-3651-2023, https://doi.org/10.5194/bg-20-3651-2023, 2023
Short summary
Short summary
We combined 2 years of monthly drone-acquired RGB (red–green–blue) imagery with field surveys in a central Amazon forest. Our results indicate that small gaps associated with branch fall were the most frequent. Biomass losses were partially controlled by gap area, with branch fall and snapping contributing the least and greatest relative values, respectively. Our study highlights the potential of drone images for monitoring canopy dynamics in dense tropical forests.
Luana S. Basso, Chris Wilson, Martyn P. Chipperfield, Graciela Tejada, Henrique L. G. Cassol, Egídio Arai, Mathew Williams, T. Luke Smallman, Wouter Peters, Stijn Naus, John B. Miller, and Manuel Gloor
Atmos. Chem. Phys., 23, 9685–9723, https://doi.org/10.5194/acp-23-9685-2023, https://doi.org/10.5194/acp-23-9685-2023, 2023
Short summary
Short summary
The Amazon’s carbon balance may have changed due to forest degradation, deforestation and warmer climate. We used an atmospheric model and atmospheric CO2 observations to quantify Amazonian carbon emissions (2010–2018). The region was a small carbon source to the atmosphere, mostly due to fire emissions. Forest uptake compensated for ~ 50 % of the fire emissions, meaning that the remaining forest is still a small carbon sink. We found no clear evidence of weakening carbon uptake over the period.
Sian Kou-Giesbrecht, Vivek K. Arora, Christian Seiler, Almut Arneth, Stefanie Falk, Atul K. Jain, Fortunat Joos, Daniel Kennedy, Jürgen Knauer, Stephen Sitch, Michael O'Sullivan, Naiqing Pan, Qing Sun, Hanqin Tian, Nicolas Vuichard, and Sönke Zaehle
Earth Syst. Dynam., 14, 767–795, https://doi.org/10.5194/esd-14-767-2023, https://doi.org/10.5194/esd-14-767-2023, 2023
Short summary
Short summary
Nitrogen (N) is an essential limiting nutrient to terrestrial carbon (C) sequestration. We evaluate N cycling in an ensemble of terrestrial biosphere models. We find that variability in N processes across models is large. Models tended to overestimate C storage per unit N in vegetation and soil, which could have consequences for projecting the future terrestrial C sink. However, N cycling measurements are highly uncertain, and more are necessary to guide the development of N cycling in models.
Emily Dowd, Chris Wilson, Martyn P. Chipperfield, Emanuel Gloor, Alistair Manning, and Ruth Doherty
Atmos. Chem. Phys., 23, 7363–7382, https://doi.org/10.5194/acp-23-7363-2023, https://doi.org/10.5194/acp-23-7363-2023, 2023
Short summary
Short summary
Surface observations of methane show that the seasonal cycle amplitude (SCA) of methane is decreasing in the northern high latitudes (NHLs) but increased globally (1995–2020). The NHL decrease is counterintuitive, as we expect the SCA to increase with increasing concentrations. We use a chemical transport model to investigate changes in SCA in the NHLs. We find well-mixed methane and changes in emissions from Canada, the Middle East, and Europe are the largest contributors to the SCA in NHLs.
Peter Joyce, Cristina Ruiz Villena, Yahui Huang, Alex Webb, Manuel Gloor, Fabien H. Wagner, Martyn P. Chipperfield, Rocío Barrio Guilló, Chris Wilson, and Hartmut Boesch
Atmos. Meas. Tech., 16, 2627–2640, https://doi.org/10.5194/amt-16-2627-2023, https://doi.org/10.5194/amt-16-2627-2023, 2023
Short summary
Short summary
Methane emissions are responsible for a lot of the warming caused by the greenhouse effect, much of which comes from a small number of point sources. We can identify methane point sources by analysing satellite data, but it requires a lot of time invested by experts and is prone to very high errors. Here, we produce a neural network that can automatically identify methane point sources and estimate the mass of methane that is being released per hour and are able to do so with far smaller errors.
Aparnna Ravi, Dhanyalekshmi Pillai, Christoph Gerbig, Stephen Sitch, Sönke Zaehle, Vishnu Thilakan, and Chandra Shekhar Jha
EGUsphere, https://doi.org/10.5194/egusphere-2023-817, https://doi.org/10.5194/egusphere-2023-817, 2023
Preprint archived
Short summary
Short summary
We derive high-resolution terrestrial CO2 fluxes over India from 2012 to 2020. This is achieved by utilizing satellite-based vegetation indices and meteorological data in a data-driven biospheric model. The model simulations are improved by incorporating soil variables and SIF retrievals from satellite instruments and relate them to ecosystem productivity across different biomes. The derived flux products better explain the flux variability compared to other existing model estimates.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina M. Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander W. Cheesman, Yansen Xu, and Maria Carolina Duran Rojas
Geosci. Model Dev., 16, 2261–2276, https://doi.org/10.5194/gmd-16-2261-2023, https://doi.org/10.5194/gmd-16-2261-2023, 2023
Short summary
Short summary
Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained nor fully implemented in large-scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP, with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Giacomo Grassi, Clemens Schwingshackl, Thomas Gasser, Richard A. Houghton, Stephen Sitch, Josep G. Canadell, Alessandro Cescatti, Philippe Ciais, Sandro Federici, Pierre Friedlingstein, Werner A. Kurz, Maria J. Sanz Sanchez, Raúl Abad Viñas, Ramdane Alkama, Selma Bultan, Guido Ceccherini, Stefanie Falk, Etsushi Kato, Daniel Kennedy, Jürgen Knauer, Anu Korosuo, Joana Melo, Matthew J. McGrath, Julia E. M. S. Nabel, Benjamin Poulter, Anna A. Romanovskaya, Simone Rossi, Hanqin Tian, Anthony P. Walker, Wenping Yuan, Xu Yue, and Julia Pongratz
Earth Syst. Sci. Data, 15, 1093–1114, https://doi.org/10.5194/essd-15-1093-2023, https://doi.org/10.5194/essd-15-1093-2023, 2023
Short summary
Short summary
Striking differences exist in estimates of land-use CO2 fluxes between the national greenhouse gas inventories and the IPCC assessment reports. These differences hamper an accurate assessment of the collective progress under the Paris Agreement. By implementing an approach that conceptually reconciles land-use CO2 flux from national inventories and the global models used by the IPCC, our study is an important step forward for increasing confidence in land-use CO2 flux estimates.
Stijn Naus, Lucas G. Domingues, Maarten Krol, Ingrid T. Luijkx, Luciana V. Gatti, John B. Miller, Emanuel Gloor, Sourish Basu, Caio Correia, Gerbrand Koren, Helen M. Worden, Johannes Flemming, Gabrielle Pétron, and Wouter Peters
Atmos. Chem. Phys., 22, 14735–14750, https://doi.org/10.5194/acp-22-14735-2022, https://doi.org/10.5194/acp-22-14735-2022, 2022
Short summary
Short summary
We assimilate MOPITT CO satellite data in the TM5-4D-Var inverse modelling framework to estimate Amazon fire CO emissions for 2003–2018. We show that fire emissions have decreased over the analysis period, coincident with a decrease in deforestation rates. However, interannual variations in fire emissions are large, and they correlate strongly with soil moisture. Our results reveal an important role for robust, top-down fire CO emissions in quantifying and attributing Amazon fire intensity.
Pierre Friedlingstein, Michael O'Sullivan, Matthew W. Jones, Robbie M. Andrew, Luke Gregor, Judith Hauck, Corinne Le Quéré, Ingrid T. Luijkx, Are Olsen, Glen P. Peters, Wouter Peters, Julia Pongratz, Clemens Schwingshackl, Stephen Sitch, Josep G. Canadell, Philippe Ciais, Robert B. Jackson, Simone R. Alin, Ramdane Alkama, Almut Arneth, Vivek K. Arora, Nicholas R. Bates, Meike Becker, Nicolas Bellouin, Henry C. Bittig, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Margot Cronin, Wiley Evans, Stefanie Falk, Richard A. Feely, Thomas Gasser, Marion Gehlen, Thanos Gkritzalis, Lucas Gloege, Giacomo Grassi, Nicolas Gruber, Özgür Gürses, Ian Harris, Matthew Hefner, Richard A. Houghton, George C. Hurtt, Yosuke Iida, Tatiana Ilyina, Atul K. Jain, Annika Jersild, Koji Kadono, Etsushi Kato, Daniel Kennedy, Kees Klein Goldewijk, Jürgen Knauer, Jan Ivar Korsbakken, Peter Landschützer, Nathalie Lefèvre, Keith Lindsay, Junjie Liu, Zhu Liu, Gregg Marland, Nicolas Mayot, Matthew J. McGrath, Nicolas Metzl, Natalie M. Monacci, David R. Munro, Shin-Ichiro Nakaoka, Yosuke Niwa, Kevin O'Brien, Tsuneo Ono, Paul I. Palmer, Naiqing Pan, Denis Pierrot, Katie Pocock, Benjamin Poulter, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Carmen Rodriguez, Thais M. Rosan, Jörg Schwinger, Roland Séférian, Jamie D. Shutler, Ingunn Skjelvan, Tobias Steinhoff, Qing Sun, Adrienne J. Sutton, Colm Sweeney, Shintaro Takao, Toste Tanhua, Pieter P. Tans, Xiangjun Tian, Hanqin Tian, Bronte Tilbrook, Hiroyuki Tsujino, Francesco Tubiello, Guido R. van der Werf, Anthony P. Walker, Rik Wanninkhof, Chris Whitehead, Anna Willstrand Wranne, Rebecca Wright, Wenping Yuan, Chao Yue, Xu Yue, Sönke Zaehle, Jiye Zeng, and Bo Zheng
Earth Syst. Sci. Data, 14, 4811–4900, https://doi.org/10.5194/essd-14-4811-2022, https://doi.org/10.5194/essd-14-4811-2022, 2022
Short summary
Short summary
The Global Carbon Budget 2022 describes the datasets and methodology used to quantify the anthropogenic emissions of carbon dioxide (CO2) and their partitioning among the atmosphere, the land ecosystems, and the ocean. These living datasets are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
Short summary
Short summary
Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Flossie Brown, Gerd A. Folberth, Stephen Sitch, Susanne Bauer, Marijn Bauters, Pascal Boeckx, Alexander W. Cheesman, Makoto Deushi, Inês Dos Santos Vieira, Corinne Galy-Lacaux, James Haywood, James Keeble, Lina M. Mercado, Fiona M. O'Connor, Naga Oshima, Kostas Tsigaridis, and Hans Verbeeck
Atmos. Chem. Phys., 22, 12331–12352, https://doi.org/10.5194/acp-22-12331-2022, https://doi.org/10.5194/acp-22-12331-2022, 2022
Short summary
Short summary
Surface ozone can decrease plant productivity and impair human health. In this study, we evaluate the change in surface ozone due to climate change over South America and Africa using Earth system models. We find that if the climate were to change according to the worst-case scenario used here, models predict that forested areas in biomass burning locations and urban populations will be at increasing risk of ozone exposure, but other areas will experience a climate benefit.
Marina Corrêa Scalon, Imma Oliveras Menor, Renata Freitag, Karine S. Peixoto, Sami W. Rifai, Beatriz Schwantes Marimon, Ben Hur Marimon Junior, and Yadvinder Malhi
Biogeosciences, 19, 3649–3661, https://doi.org/10.5194/bg-19-3649-2022, https://doi.org/10.5194/bg-19-3649-2022, 2022
Short summary
Short summary
We investigated dynamic nutrient flow and demand in a typical savanna and a transition forest to understand how similar soils and the same climate dominated by savanna vegetation can also support forest-like formations. Savanna relied on nutrient resorption from wood, and nutrient demand was equally partitioned between leaves, wood and fine roots. Transition forest relied on resorption from the canopy biomass and nutrient demand was predominantly driven by leaves.
Rebecca J. Oliver, Lina M. Mercado, Doug B. Clark, Chris Huntingford, Christopher M. Taylor, Pier Luigi Vidale, Patrick C. McGuire, Markus Todt, Sonja Folwell, Valiyaveetil Shamsudheen Semeena, and Belinda E. Medlyn
Geosci. Model Dev., 15, 5567–5592, https://doi.org/10.5194/gmd-15-5567-2022, https://doi.org/10.5194/gmd-15-5567-2022, 2022
Short summary
Short summary
We introduce new representations of plant physiological processes into a land surface model. Including new biological understanding improves modelled carbon and water fluxes for the present in tropical and northern-latitude forests. Future climate simulations demonstrate the sensitivity of photosynthesis to temperature is important for modelling carbon cycle dynamics in a warming world. Accurate representation of these processes in models is necessary for robust predictions of climate change.
Mahdi André Nakhavali, Lina M. Mercado, Iain P. Hartley, Stephen Sitch, Fernanda V. Cunha, Raffaello di Ponzio, Laynara F. Lugli, Carlos A. Quesada, Kelly M. Andersen, Sarah E. Chadburn, Andy J. Wiltshire, Douglas B. Clark, Gyovanni Ribeiro, Lara Siebert, Anna C. M. Moraes, Jéssica Schmeisk Rosa, Rafael Assis, and José L. Camargo
Geosci. Model Dev., 15, 5241–5269, https://doi.org/10.5194/gmd-15-5241-2022, https://doi.org/10.5194/gmd-15-5241-2022, 2022
Short summary
Short summary
In tropical ecosystems, the availability of rock-derived elements such as P can be very low. Thus, without a representation of P cycling, tropical forest responses to rising atmospheric CO2 conditions in areas such as Amazonia remain highly uncertain. We introduced P dynamics and its interactions with the N and P cycles into the JULES model. Our results highlight the potential for high P limitation and therefore lower CO2 fertilization capacity in the Amazon forest with low-fertility soils.
Félicien Meunier, Sruthi M. Krishna Moorthy, Marc Peaucelle, Kim Calders, Louise Terryn, Wim Verbruggen, Chang Liu, Ninni Saarinen, Niall Origo, Joanne Nightingale, Mathias Disney, Yadvinder Malhi, and Hans Verbeeck
Geosci. Model Dev., 15, 4783–4803, https://doi.org/10.5194/gmd-15-4783-2022, https://doi.org/10.5194/gmd-15-4783-2022, 2022
Short summary
Short summary
We integrated state-of-the-art observations of the structure of the vegetation in a temperate forest to constrain a vegetation model that aims to reproduce such an ecosystem in silico. We showed that the use of this information helps to constrain the model structure, its critical parameters, as well as its initial state. This research confirms the critical importance of the representation of the vegetation structure in vegetation models and proposes a method to overcome this challenge.
Shakirudeen Lawal, Stephen Sitch, Danica Lombardozzi, Julia E. M. S. Nabel, Hao-Wei Wey, Pierre Friedlingstein, Hanqin Tian, and Bruce Hewitson
Hydrol. Earth Syst. Sci., 26, 2045–2071, https://doi.org/10.5194/hess-26-2045-2022, https://doi.org/10.5194/hess-26-2045-2022, 2022
Short summary
Short summary
To investigate the impacts of drought on vegetation, which few studies have done due to various limitations, we used the leaf area index as proxy and dynamic global vegetation models (DGVMs) to simulate drought impacts because the models use observationally derived climate. We found that the semi-desert biome responds strongly to drought in the summer season, while the tropical forest biome shows a weak response. This study could help target areas to improve drought monitoring and simulation.
Pierre Friedlingstein, Matthew W. Jones, Michael O'Sullivan, Robbie M. Andrew, Dorothee C. E. Bakker, Judith Hauck, Corinne Le Quéré, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Josep G. Canadell, Philippe Ciais, Rob B. Jackson, Simone R. Alin, Peter Anthoni, Nicholas R. Bates, Meike Becker, Nicolas Bellouin, Laurent Bopp, Thi Tuyet Trang Chau, Frédéric Chevallier, Louise P. Chini, Margot Cronin, Kim I. Currie, Bertrand Decharme, Laique M. Djeutchouang, Xinyu Dou, Wiley Evans, Richard A. Feely, Liang Feng, Thomas Gasser, Dennis Gilfillan, Thanos Gkritzalis, Giacomo Grassi, Luke Gregor, Nicolas Gruber, Özgür Gürses, Ian Harris, Richard A. Houghton, George C. Hurtt, Yosuke Iida, Tatiana Ilyina, Ingrid T. Luijkx, Atul Jain, Steve D. Jones, Etsushi Kato, Daniel Kennedy, Kees Klein Goldewijk, Jürgen Knauer, Jan Ivar Korsbakken, Arne Körtzinger, Peter Landschützer, Siv K. Lauvset, Nathalie Lefèvre, Sebastian Lienert, Junjie Liu, Gregg Marland, Patrick C. McGuire, Joe R. Melton, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Yosuke Niwa, Tsuneo Ono, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Thais M. Rosan, Jörg Schwinger, Clemens Schwingshackl, Roland Séférian, Adrienne J. Sutton, Colm Sweeney, Toste Tanhua, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco Tubiello, Guido R. van der Werf, Nicolas Vuichard, Chisato Wada, Rik Wanninkhof, Andrew J. Watson, David Willis, Andrew J. Wiltshire, Wenping Yuan, Chao Yue, Xu Yue, Sönke Zaehle, and Jiye Zeng
Earth Syst. Sci. Data, 14, 1917–2005, https://doi.org/10.5194/essd-14-1917-2022, https://doi.org/10.5194/essd-14-1917-2022, 2022
Short summary
Short summary
The Global Carbon Budget 2021 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Ruqi Yang, Jun Wang, Ning Zeng, Stephen Sitch, Wenhan Tang, Matthew Joseph McGrath, Qixiang Cai, Di Liu, Danica Lombardozzi, Hanqin Tian, Atul K. Jain, and Pengfei Han
Earth Syst. Dynam., 13, 833–849, https://doi.org/10.5194/esd-13-833-2022, https://doi.org/10.5194/esd-13-833-2022, 2022
Short summary
Short summary
We comprehensively investigate historical GPP trends based on five kinds of GPP datasets and analyze the causes for any discrepancies among them. Results show contrasting behaviors between modeled and satellite-based GPP trends, and their inconsistencies are likely caused by the contrasting performance between satellite-derived and modeled leaf area index (LAI). Thus, the uncertainty in satellite-based GPP induced by LAI undermines its role in assessing the performance of DGVM simulations.
Mathilda Hancock, Stephen Sitch, Fabian Jörg Fischer, Jérôme Chave, Michael O'Sullivan, Dominic Fawcett, and Lina María Mercado
Biogeosciences Discuss., https://doi.org/10.5194/bg-2022-87, https://doi.org/10.5194/bg-2022-87, 2022
Publication in BG not foreseen
Short summary
Short summary
Global vegetation models often underestimate the spatial variability of carbon stored in the Amazon forest. This paper demonstrates that including spatially varying tree mortality rates, as opposed to a homogeneous rate, in one model, significantly improves its simulations of the forest carbon store. To overcome the limited resolution of tree mortality data, this research presents a simple method of calculating mortality rates across Amazonia using a dependence on wood density.
Zhu Deng, Philippe Ciais, Zitely A. Tzompa-Sosa, Marielle Saunois, Chunjing Qiu, Chang Tan, Taochun Sun, Piyu Ke, Yanan Cui, Katsumasa Tanaka, Xin Lin, Rona L. Thompson, Hanqin Tian, Yuanzhi Yao, Yuanyuan Huang, Ronny Lauerwald, Atul K. Jain, Xiaoming Xu, Ana Bastos, Stephen Sitch, Paul I. Palmer, Thomas Lauvaux, Alexandre d'Aspremont, Clément Giron, Antoine Benoit, Benjamin Poulter, Jinfeng Chang, Ana Maria Roxana Petrescu, Steven J. Davis, Zhu Liu, Giacomo Grassi, Clément Albergel, Francesco N. Tubiello, Lucia Perugini, Wouter Peters, and Frédéric Chevallier
Earth Syst. Sci. Data, 14, 1639–1675, https://doi.org/10.5194/essd-14-1639-2022, https://doi.org/10.5194/essd-14-1639-2022, 2022
Short summary
Short summary
In support of the global stocktake of the Paris Agreement on climate change, we proposed a method for reconciling the results of global atmospheric inversions with data from UNFCCC national greenhouse gas inventories (NGHGIs). Here, based on a new global harmonized database that we compiled from the UNFCCC NGHGIs and a comprehensive framework presented in this study to process the results of inversions, we compared their results of carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O).
Chandan Sarangi, TC Chakraborty, Sachchidanand Tripathi, Mithun Krishnan, Ross Morrison, Jonathan Evans, and Lina M. Mercado
Atmos. Chem. Phys., 22, 3615–3629, https://doi.org/10.5194/acp-22-3615-2022, https://doi.org/10.5194/acp-22-3615-2022, 2022
Short summary
Short summary
Transpiration fluxes by vegetation are reduced under heat stress to conserve water. However, in situ observations over northern India show that the strength of the inverse association between transpiration and atmospheric vapor pressure deficit is weakening in the presence of heavy aerosol loading. This finding not only implicates the significant role of aerosols in modifying the evaporative fraction (EF) but also warrants an in-depth analysis of the aerosol–plant–temperature–EF continuum.
Benjamin Wild, Irene Teubner, Leander Moesinger, Ruxandra-Maria Zotta, Matthias Forkel, Robin van der Schalie, Stephen Sitch, and Wouter Dorigo
Earth Syst. Sci. Data, 14, 1063–1085, https://doi.org/10.5194/essd-14-1063-2022, https://doi.org/10.5194/essd-14-1063-2022, 2022
Short summary
Short summary
Gross primary production (GPP) describes the conversion of CO2 to carbohydrates and can be seen as a filter for our atmosphere of the primary greenhouse gas CO2. We developed VODCA2GPP, a GPP dataset that is based on vegetation optical depth from microwave remote sensing and temperature. Thus, it is mostly independent from existing GPP datasets and also available in regions with frequent cloud coverage. Analysis showed that VODCA2GPP is able to complement existing state-of-the-art GPP datasets.
Rahayu Adzhar, Douglas I. Kelley, Ning Dong, Charles George, Mireia Torello Raventos, Elmar Veenendaal, Ted R. Feldpausch, Oliver L. Phillips, Simon L. Lewis, Bonaventure Sonké, Herman Taedoumg, Beatriz Schwantes Marimon, Tomas Domingues, Luzmila Arroyo, Gloria Djagbletey, Gustavo Saiz, and France Gerard
Biogeosciences, 19, 1377–1394, https://doi.org/10.5194/bg-19-1377-2022, https://doi.org/10.5194/bg-19-1377-2022, 2022
Short summary
Short summary
The MODIS Vegetation Continuous Fields (VCF) product underestimates tree cover compared to field data and could be underestimating tree cover significantly across the tropics. VCF is used to represent land cover or validate model performance in many land surface and global vegetation models and to train finer-scaled Earth observation products. Because underestimation in VCF may render it unsuitable for training data and bias model predictions, it should be calibrated before use in the tropics.
Lina Teckentrup, Martin G. De Kauwe, Andrew J. Pitman, Daniel S. Goll, Vanessa Haverd, Atul K. Jain, Emilie Joetzjer, Etsushi Kato, Sebastian Lienert, Danica Lombardozzi, Patrick C. McGuire, Joe R. Melton, Julia E. M. S. Nabel, Julia Pongratz, Stephen Sitch, Anthony P. Walker, and Sönke Zaehle
Biogeosciences, 18, 5639–5668, https://doi.org/10.5194/bg-18-5639-2021, https://doi.org/10.5194/bg-18-5639-2021, 2021
Short summary
Short summary
The Australian continent is included in global assessments of the carbon cycle such as the global carbon budget, yet the performance of dynamic global vegetation models (DGVMs) over Australia has rarely been evaluated. We assessed simulations by an ensemble of dynamic global vegetation models over Australia and highlighted a number of key areas that lead to model divergence on both short (inter-annual) and long (decadal) timescales.
Ana Bastos, René Orth, Markus Reichstein, Philippe Ciais, Nicolas Viovy, Sönke Zaehle, Peter Anthoni, Almut Arneth, Pierre Gentine, Emilie Joetzjer, Sebastian Lienert, Tammas Loughran, Patrick C. McGuire, Sungmin O, Julia Pongratz, and Stephen Sitch
Earth Syst. Dynam., 12, 1015–1035, https://doi.org/10.5194/esd-12-1015-2021, https://doi.org/10.5194/esd-12-1015-2021, 2021
Short summary
Short summary
Temperate biomes in Europe are not prone to recurrent dry and hot conditions in summer. However, these conditions may become more frequent in the coming decades. Because stress conditions can leave legacies for many years, this may result in reduced ecosystem resilience under recurrent stress. We assess vegetation vulnerability to the hot and dry summers in 2018 and 2019 in Europe and find the important role of inter-annual legacy effects from 2018 in modulating the impacts of the 2019 event.
Alexander J. Winkler, Ranga B. Myneni, Alexis Hannart, Stephen Sitch, Vanessa Haverd, Danica Lombardozzi, Vivek K. Arora, Julia Pongratz, Julia E. M. S. Nabel, Daniel S. Goll, Etsushi Kato, Hanqin Tian, Almut Arneth, Pierre Friedlingstein, Atul K. Jain, Sönke Zaehle, and Victor Brovkin
Biogeosciences, 18, 4985–5010, https://doi.org/10.5194/bg-18-4985-2021, https://doi.org/10.5194/bg-18-4985-2021, 2021
Short summary
Short summary
Satellite observations since the early 1980s show that Earth's greening trend is slowing down and that browning clusters have been emerging, especially in the last 2 decades. A collection of model simulations in conjunction with causal theory points at climatic changes as a key driver of vegetation changes in natural ecosystems. Most models underestimate the observed vegetation browning, especially in tropical rainforests, which could be due to an excessive CO2 fertilization effect in models.
Louise Chini, George Hurtt, Ritvik Sahajpal, Steve Frolking, Kees Klein Goldewijk, Stephen Sitch, Raphael Ganzenmüller, Lei Ma, Lesley Ott, Julia Pongratz, and Benjamin Poulter
Earth Syst. Sci. Data, 13, 4175–4189, https://doi.org/10.5194/essd-13-4175-2021, https://doi.org/10.5194/essd-13-4175-2021, 2021
Short summary
Short summary
Carbon emissions from land-use change are a large and uncertain component of the global carbon cycle. The Land-Use Harmonization 2 (LUH2) dataset was developed as an input to carbon and climate simulations and has been updated annually for the Global Carbon Budget (GCB) assessments. Here we discuss the methodology for producing these annual LUH2 updates and describe the 2019 version which used new cropland and grazing land data inputs for the globally important region of Brazil.
Chris Wilson, Martyn P. Chipperfield, Manuel Gloor, Robert J. Parker, Hartmut Boesch, Joey McNorton, Luciana V. Gatti, John B. Miller, Luana S. Basso, and Sarah A. Monks
Atmos. Chem. Phys., 21, 10643–10669, https://doi.org/10.5194/acp-21-10643-2021, https://doi.org/10.5194/acp-21-10643-2021, 2021
Short summary
Short summary
Methane (CH4) is an important greenhouse gas emitted from wetlands like those found in the basin of the Amazon River. Using an atmospheric model and observations from GOSAT, we quantified CH4 emissions from Amazonia during the previous decade. We found that the largest emissions came from a region in the eastern basin and that emissions there were rising faster than in other areas of South America. This finding was supported by CH4 observations made on aircraft within the basin.
Wolfgang A. Obermeier, Julia E. M. S. Nabel, Tammas Loughran, Kerstin Hartung, Ana Bastos, Felix Havermann, Peter Anthoni, Almut Arneth, Daniel S. Goll, Sebastian Lienert, Danica Lombardozzi, Sebastiaan Luyssaert, Patrick C. McGuire, Joe R. Melton, Benjamin Poulter, Stephen Sitch, Michael O. Sullivan, Hanqin Tian, Anthony P. Walker, Andrew J. Wiltshire, Soenke Zaehle, and Julia Pongratz
Earth Syst. Dynam., 12, 635–670, https://doi.org/10.5194/esd-12-635-2021, https://doi.org/10.5194/esd-12-635-2021, 2021
Short summary
Short summary
We provide the first spatio-temporally explicit comparison of different model-derived fluxes from land use and land cover changes (fLULCCs) by using the TRENDY v8 dynamic global vegetation models used in the 2019 global carbon budget. We find huge regional fLULCC differences resulting from environmental assumptions, simulated periods, and the timing of land use and land cover changes, and we argue for a method consistent across time and space and for carefully choosing the accounting period.
Garry D. Hayman, Edward Comyn-Platt, Chris Huntingford, Anna B. Harper, Tom Powell, Peter M. Cox, William Collins, Christopher Webber, Jason Lowe, Stephen Sitch, Joanna I. House, Jonathan C. Doelman, Detlef P. van Vuuren, Sarah E. Chadburn, Eleanor Burke, and Nicola Gedney
Earth Syst. Dynam., 12, 513–544, https://doi.org/10.5194/esd-12-513-2021, https://doi.org/10.5194/esd-12-513-2021, 2021
Short summary
Short summary
We model greenhouse gas emission scenarios consistent with limiting global warming to either 1.5 or 2 °C above pre-industrial levels. We quantify the effectiveness of methane emission control and land-based mitigation options regionally. Our results highlight the importance of reducing methane emissions for realistic emission pathways that meet the global warming targets. For land-based mitigation, growing bioenergy crops on existing agricultural land is preferable to replacing forests.
Zichong Chen, Junjie Liu, Daven K. Henze, Deborah N. Huntzinger, Kelley C. Wells, Stephen Sitch, Pierre Friedlingstein, Emilie Joetzjer, Vladislav Bastrikov, Daniel S. Goll, Vanessa Haverd, Atul K. Jain, Etsushi Kato, Sebastian Lienert, Danica L. Lombardozzi, Patrick C. McGuire, Joe R. Melton, Julia E. M. S. Nabel, Benjamin Poulter, Hanqin Tian, Andrew J. Wiltshire, Sönke Zaehle, and Scot M. Miller
Atmos. Chem. Phys., 21, 6663–6680, https://doi.org/10.5194/acp-21-6663-2021, https://doi.org/10.5194/acp-21-6663-2021, 2021
Short summary
Short summary
NASA's Orbiting Carbon Observatory 2 (OCO-2) satellite observes atmospheric CO2 globally. We use a multiple regression and inverse model to quantify the relationships between OCO-2 and environmental drivers within individual years for 2015–2018 and within seven global biomes. Our results point to limitations of current space-based observations for inferring environmental relationships but also indicate the potential to inform key relationships that are very uncertain in process-based models.
Jessica C. A. Baker, Luis Garcia-Carreras, Manuel Gloor, John H. Marsham, Wolfgang Buermann, Humberto R. da Rocha, Antonio D. Nobre, Alessandro Carioca de Araujo, and Dominick V. Spracklen
Hydrol. Earth Syst. Sci., 25, 2279–2300, https://doi.org/10.5194/hess-25-2279-2021, https://doi.org/10.5194/hess-25-2279-2021, 2021
Short summary
Short summary
Evapotranspiration (ET) is a vital part of the Amazon water cycle, but it is difficult to measure over large areas. In this study, we compare spatial patterns, seasonality, and recent trends in Amazon ET from a water-budget analysis with estimates from satellites, reanalysis, and global climate models. We find large differences between products, showing that many widely used datasets and climate models may not provide a reliable representation of this crucial variable over the Amazon.
Andrew J. Wiltshire, Eleanor J. Burke, Sarah E. Chadburn, Chris D. Jones, Peter M. Cox, Taraka Davies-Barnard, Pierre Friedlingstein, Anna B. Harper, Spencer Liddicoat, Stephen Sitch, and Sönke Zaehle
Geosci. Model Dev., 14, 2161–2186, https://doi.org/10.5194/gmd-14-2161-2021, https://doi.org/10.5194/gmd-14-2161-2021, 2021
Short summary
Short summary
Limited nitrogen availbility can restrict the growth of plants and their ability to assimilate carbon. It is important to include the impact of this process on the global land carbon cycle. This paper presents a model of the coupled land carbon and nitrogen cycle, which is included within the UK Earth System model to improve projections of climate change and impacts on ecosystems.
Gilvan Sampaio, Marília H. Shimizu, Carlos A. Guimarães-Júnior, Felipe Alexandre, Marcelo Guatura, Manoel Cardoso, Tomas F. Domingues, Anja Rammig, Celso von Randow, Luiz F. C. Rezende, and David M. Lapola
Biogeosciences, 18, 2511–2525, https://doi.org/10.5194/bg-18-2511-2021, https://doi.org/10.5194/bg-18-2511-2021, 2021
Short summary
Short summary
The impact of large-scale deforestation and the physiological effects of elevated atmospheric CO2 on Amazon rainfall are systematically compared in this study. Our results are remarkable in showing that the two disturbances cause equivalent rainfall decrease, though through different causal mechanisms. These results highlight the importance of not only curbing regional deforestation but also reducing global CO2 emissions to avoid climatic changes in the Amazon.
Pierre Friedlingstein, Michael O'Sullivan, Matthew W. Jones, Robbie M. Andrew, Judith Hauck, Are Olsen, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Corinne Le Quéré, Josep G. Canadell, Philippe Ciais, Robert B. Jackson, Simone Alin, Luiz E. O. C. Aragão, Almut Arneth, Vivek Arora, Nicholas R. Bates, Meike Becker, Alice Benoit-Cattin, Henry C. Bittig, Laurent Bopp, Selma Bultan, Naveen Chandra, Frédéric Chevallier, Louise P. Chini, Wiley Evans, Liesbeth Florentie, Piers M. Forster, Thomas Gasser, Marion Gehlen, Dennis Gilfillan, Thanos Gkritzalis, Luke Gregor, Nicolas Gruber, Ian Harris, Kerstin Hartung, Vanessa Haverd, Richard A. Houghton, Tatiana Ilyina, Atul K. Jain, Emilie Joetzjer, Koji Kadono, Etsushi Kato, Vassilis Kitidis, Jan Ivar Korsbakken, Peter Landschützer, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Zhu Liu, Danica Lombardozzi, Gregg Marland, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Yosuke Niwa, Kevin O'Brien, Tsuneo Ono, Paul I. Palmer, Denis Pierrot, Benjamin Poulter, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Adam J. P. Smith, Adrienne J. Sutton, Toste Tanhua, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Guido van der Werf, Nicolas Vuichard, Anthony P. Walker, Rik Wanninkhof, Andrew J. Watson, David Willis, Andrew J. Wiltshire, Wenping Yuan, Xu Yue, and Sönke Zaehle
Earth Syst. Sci. Data, 12, 3269–3340, https://doi.org/10.5194/essd-12-3269-2020, https://doi.org/10.5194/essd-12-3269-2020, 2020
Short summary
Short summary
The Global Carbon Budget 2020 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Felix Leung, Karina Williams, Stephen Sitch, Amos P. K. Tai, Andy Wiltshire, Jemma Gornall, Elizabeth A. Ainsworth, Timothy Arkebauer, and David Scoby
Geosci. Model Dev., 13, 6201–6213, https://doi.org/10.5194/gmd-13-6201-2020, https://doi.org/10.5194/gmd-13-6201-2020, 2020
Short summary
Short summary
Ground-level ozone (O3) is detrimental to plant productivity and crop yield. Currently, the Joint UK Land Environment Simulator (JULES) includes a representation of crops (JULES-crop). The parameters for O3 damage in soybean in JULES-crop were calibrated against photosynthesis measurements from the Soybean Free Air Concentration Enrichment (SoyFACE). The result shows good performance for yield, and it helps contribute to understanding of the impacts of climate and air pollution on food security.
Stijn Hantson, Douglas I. Kelley, Almut Arneth, Sandy P. Harrison, Sally Archibald, Dominique Bachelet, Matthew Forrest, Thomas Hickler, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Lars Nieradzik, Sam S. Rabin, I. Colin Prentice, Tim Sheehan, Stephen Sitch, Lina Teckentrup, Apostolos Voulgarakis, and Chao Yue
Geosci. Model Dev., 13, 3299–3318, https://doi.org/10.5194/gmd-13-3299-2020, https://doi.org/10.5194/gmd-13-3299-2020, 2020
Short summary
Short summary
Global fire–vegetation models are widely used, but there has been limited evaluation of how well they represent various aspects of fire regimes. Here we perform a systematic evaluation of simulations made by nine FireMIP models in order to quantify their ability to reproduce a range of fire and vegetation benchmarks. While some FireMIP models are better at representing certain aspects of the fire regime, no model clearly outperforms all other models across the full range of variables assessed.
Shufen Pan, Naiqing Pan, Hanqin Tian, Pierre Friedlingstein, Stephen Sitch, Hao Shi, Vivek K. Arora, Vanessa Haverd, Atul K. Jain, Etsushi Kato, Sebastian Lienert, Danica Lombardozzi, Julia E. M. S. Nabel, Catherine Ottlé, Benjamin Poulter, Sönke Zaehle, and Steven W. Running
Hydrol. Earth Syst. Sci., 24, 1485–1509, https://doi.org/10.5194/hess-24-1485-2020, https://doi.org/10.5194/hess-24-1485-2020, 2020
Short summary
Short summary
Evapotranspiration (ET) links global water, carbon and energy cycles. We used 4 remote sensing models, 2 machine-learning algorithms and 14 land surface models to analyze the changes in global terrestrial ET. These three categories of approaches agreed well in terms of ET intensity. For 1982–2011, all models showed that Earth greening enhanced terrestrial ET. The small interannual variability of global terrestrial ET suggests it has a potential planetary boundary of around 600 mm yr-1.
Martin Jung, Christopher Schwalm, Mirco Migliavacca, Sophia Walther, Gustau Camps-Valls, Sujan Koirala, Peter Anthoni, Simon Besnard, Paul Bodesheim, Nuno Carvalhais, Frédéric Chevallier, Fabian Gans, Daniel S. Goll, Vanessa Haverd, Philipp Köhler, Kazuhito Ichii, Atul K. Jain, Junzhi Liu, Danica Lombardozzi, Julia E. M. S. Nabel, Jacob A. Nelson, Michael O'Sullivan, Martijn Pallandt, Dario Papale, Wouter Peters, Julia Pongratz, Christian Rödenbeck, Stephen Sitch, Gianluca Tramontana, Anthony Walker, Ulrich Weber, and Markus Reichstein
Biogeosciences, 17, 1343–1365, https://doi.org/10.5194/bg-17-1343-2020, https://doi.org/10.5194/bg-17-1343-2020, 2020
Short summary
Short summary
We test the approach of producing global gridded carbon fluxes based on combining machine learning with local measurements, remote sensing and climate data. We show that we can reproduce seasonal variations in carbon assimilated by plants via photosynthesis and in ecosystem net carbon balance. The ecosystem’s mean carbon balance and carbon flux trends require cautious interpretation. The analysis paves the way for future improvements of the data-driven assessment of carbon fluxes.
Xu Yue, Hong Liao, Huijun Wang, Tianyi Zhang, Nadine Unger, Stephen Sitch, Zhaozhong Feng, and Jia Yang
Atmos. Chem. Phys., 20, 2353–2366, https://doi.org/10.5194/acp-20-2353-2020, https://doi.org/10.5194/acp-20-2353-2020, 2020
Short summary
Short summary
We explore ecosystem responses in China to 1.5 °C global warming under stabilized versus transient pathways. Remarkably, GPP shows 30 % higher enhancement in the stabilized than the transient pathway because of the lower ozone (smaller damages to photosynthesis) and fewer aerosols (higher light availability) in the former pathway. Our analyses suggest that an associated reduction of CO2 and pollution emissions brings more benefits to ecosystems in China via 1.5 °C global warming.
Carlos Alberto Quesada, Claudia Paz, Erick Oblitas Mendoza, Oliver Lawrence Phillips, Gustavo Saiz, and Jon Lloyd
SOIL, 6, 53–88, https://doi.org/10.5194/soil-6-53-2020, https://doi.org/10.5194/soil-6-53-2020, 2020
Short summary
Short summary
Amazon soils hold as much carbon (C) as is contained in the vegetation. In this work we sampled soils across 8 different Amazonian countries to try to understand which soil properties control current Amazonian soil C concentrations. We confirm previous knowledge that highly developed soils hold C through clay content interactions but also show a previously unreported mechanism of soil C stabilization in the younger Amazonian soil types which hold C through aluminium organic matter interactions.
Amelie Baomalgré Bougma, Korodjouma Ouattara, Halidou Compaore, Hassan Bismarck Nacro, Caleb Melenya, Samuel Ayodele Mesele, Vincent Logah, Azeez Jamiu Oladipupo, Elmar Veenendaal, and Jonathan Lloyd
SOIL Discuss., https://doi.org/10.5194/soil-2019-87, https://doi.org/10.5194/soil-2019-87, 2020
Preprint withdrawn
Short summary
Short summary
To better understand the development of forest islands in west Africa, our study focused on soil aggregates stability of these patches across a precipitation transect. Soil samples were taken from 0 to 5 cm and 5 to 10 cm depths and aggregate fractions with diameters: > 500, 500–250 μm and 250–53 μm determined using the water sieving method. The results showed significant higher proportion of stable meso and macroaggregates in forest islands and natural savanna compared to agricultural soil.
Pierre Friedlingstein, Matthew W. Jones, Michael O'Sullivan, Robbie M. Andrew, Judith Hauck, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Corinne Le Quéré, Dorothee C. E. Bakker, Josep G. Canadell, Philippe Ciais, Robert B. Jackson, Peter Anthoni, Leticia Barbero, Ana Bastos, Vladislav Bastrikov, Meike Becker, Laurent Bopp, Erik Buitenhuis, Naveen Chandra, Frédéric Chevallier, Louise P. Chini, Kim I. Currie, Richard A. Feely, Marion Gehlen, Dennis Gilfillan, Thanos Gkritzalis, Daniel S. Goll, Nicolas Gruber, Sören Gutekunst, Ian Harris, Vanessa Haverd, Richard A. Houghton, George Hurtt, Tatiana Ilyina, Atul K. Jain, Emilie Joetzjer, Jed O. Kaplan, Etsushi Kato, Kees Klein Goldewijk, Jan Ivar Korsbakken, Peter Landschützer, Siv K. Lauvset, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Danica Lombardozzi, Gregg Marland, Patrick C. McGuire, Joe R. Melton, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Craig Neill, Abdirahman M. Omar, Tsuneo Ono, Anna Peregon, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Roland Séférian, Jörg Schwinger, Naomi Smith, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Guido R. van der Werf, Andrew J. Wiltshire, and Sönke Zaehle
Earth Syst. Sci. Data, 11, 1783–1838, https://doi.org/10.5194/essd-11-1783-2019, https://doi.org/10.5194/essd-11-1783-2019, 2019
Short summary
Short summary
The Global Carbon Budget 2019 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Sophie Flack-Prain, Patrick Meir, Yadvinder Malhi, Thomas Luke Smallman, and Mathew Williams
Biogeosciences, 16, 4463–4484, https://doi.org/10.5194/bg-16-4463-2019, https://doi.org/10.5194/bg-16-4463-2019, 2019
Short summary
Short summary
Across the Amazon rainforest, trees take in carbon through photosynthesis. However, photosynthesis across the basin is threatened by predicted shifts in rainfall patterns. To unpick how changes in rainfall affect photosynthesis, we use a model which combines climate data with our knowledge of photosynthesis and other plant processes. We find that stomatal constraints are less important, and instead shifts in leaf surface area and leaf properties drive changes in photosynthesis with rainfall.
Fang Li, Maria Val Martin, Meinrat O. Andreae, Almut Arneth, Stijn Hantson, Johannes W. Kaiser, Gitta Lasslop, Chao Yue, Dominique Bachelet, Matthew Forrest, Erik Kluzek, Xiaohong Liu, Stephane Mangeon, Joe R. Melton, Daniel S. Ward, Anton Darmenov, Thomas Hickler, Charles Ichoku, Brian I. Magi, Stephen Sitch, Guido R. van der Werf, Christine Wiedinmyer, and Sam S. Rabin
Atmos. Chem. Phys., 19, 12545–12567, https://doi.org/10.5194/acp-19-12545-2019, https://doi.org/10.5194/acp-19-12545-2019, 2019
Short summary
Short summary
Fire emissions are critical for atmospheric composition, climate, carbon cycle, and air quality. We provide the first global multi-model fire emission reconstructions for 1700–2012, including carbon and 33 species of trace gases and aerosols, based on the nine state-of-the-art global fire models that participated in FireMIP. We also provide information on the recent status and limitations of the model-based reconstructions and identify the main uncertainty sources in their long-term changes.
Lina Teckentrup, Sandy P. Harrison, Stijn Hantson, Angelika Heil, Joe R. Melton, Matthew Forrest, Fang Li, Chao Yue, Almut Arneth, Thomas Hickler, Stephen Sitch, and Gitta Lasslop
Biogeosciences, 16, 3883–3910, https://doi.org/10.5194/bg-16-3883-2019, https://doi.org/10.5194/bg-16-3883-2019, 2019
Short summary
Short summary
This study compares simulated burned area of seven global vegetation models provided by the Fire Model Intercomparison Project (FireMIP) since 1900. We investigate the influence of five forcing factors: atmospheric CO2, population density, land–use change, lightning and climate.
We find that the anthropogenic factors lead to the largest spread between models. Trends due to climate are mostly not significant but climate strongly influences the inter-annual variability of burned area.
Ana Bastos, Philippe Ciais, Frédéric Chevallier, Christian Rödenbeck, Ashley P. Ballantyne, Fabienne Maignan, Yi Yin, Marcos Fernández-Martínez, Pierre Friedlingstein, Josep Peñuelas, Shilong L. Piao, Stephen Sitch, William K. Smith, Xuhui Wang, Zaichun Zhu, Vanessa Haverd, Etsushi Kato, Atul K. Jain, Sebastian Lienert, Danica Lombardozzi, Julia E. M. S. Nabel, Philippe Peylin, Benjamin Poulter, and Dan Zhu
Atmos. Chem. Phys., 19, 12361–12375, https://doi.org/10.5194/acp-19-12361-2019, https://doi.org/10.5194/acp-19-12361-2019, 2019
Short summary
Short summary
Here we show that land-surface models improved their ability to simulate the increase in the amplitude of seasonal CO2-cycle exchange (SCANBP) by ecosystems compared to estimates by two atmospheric inversions. We find a dominant role of vegetation growth over boreal Eurasia to the observed increase in SCANBP, strongly driven by CO2 fertilization, and an overall negative effect of temperature on SCANBP. Biases can be explained by the sensitivity of simulated microbial respiration to temperature.
Karina E. Williams, Anna B. Harper, Chris Huntingford, Lina M. Mercado, Camilla T. Mathison, Pete D. Falloon, Peter M. Cox, and Joon Kim
Geosci. Model Dev., 12, 3207–3240, https://doi.org/10.5194/gmd-12-3207-2019, https://doi.org/10.5194/gmd-12-3207-2019, 2019
Short summary
Short summary
Data from the First ISLSCP Field Experiment, 1987–1989, is used to assess how well the JULES land-surface model simulates water stress in tallgrass prairie vegetation. We find that JULES simulates a decrease in key carbon and water cycle variables during the dry period, as expected, but that it does not capture the shape of the diurnal cycle on these days. These results will be used to inform future model development as part of wider evaluation efforts.
Richard Coppell, Emanuel Gloor, and Joseph Holden
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2019-51, https://doi.org/10.5194/gmd-2019-51, 2019
Publication in GMD not foreseen
Short summary
Short summary
(1) We developed a new Sphagnum model for ecosystem exchange. (2) The model is implemented in TRIFFID which is part of the JULES land surface model. (3) Outputs compare well to empirical field data. (4) JULES can now better incorporate peatland-climate feedbacks.
Florent F. Malavelle, Jim M. Haywood, Lina M. Mercado, Gerd A. Folberth, Nicolas Bellouin, Stephen Sitch, and Paulo Artaxo
Atmos. Chem. Phys., 19, 1301–1326, https://doi.org/10.5194/acp-19-1301-2019, https://doi.org/10.5194/acp-19-1301-2019, 2019
Short summary
Short summary
Diffuse light can increase the efficiency of vegetation photosynthesis. Diffuse light results from scattering by either clouds or aerosols in the atmosphere. During the dry season biomass burning (BB) on the edges of the Amazon rainforest contributes significantly to the aerosol burden over the entire region. We show that despite a modest effect of change in light conditions, the overall impact of BB aerosols on the vegetation is still important when indirect climate feedbacks are considered.
Matthias Forkel, Niels Andela, Sandy P. Harrison, Gitta Lasslop, Margreet van Marle, Emilio Chuvieco, Wouter Dorigo, Matthew Forrest, Stijn Hantson, Angelika Heil, Fang Li, Joe Melton, Stephen Sitch, Chao Yue, and Almut Arneth
Biogeosciences, 16, 57–76, https://doi.org/10.5194/bg-16-57-2019, https://doi.org/10.5194/bg-16-57-2019, 2019
Short summary
Short summary
Weather, humans, and vegetation control the occurrence of fires. In this study we find that global fire–vegetation models underestimate the strong increase of burned area with higher previous-season plant productivity in comparison to satellite-derived relationships.
Joe McNorton, Chris Wilson, Manuel Gloor, Rob J. Parker, Hartmut Boesch, Wuhu Feng, Ryan Hossaini, and Martyn P. Chipperfield
Atmos. Chem. Phys., 18, 18149–18168, https://doi.org/10.5194/acp-18-18149-2018, https://doi.org/10.5194/acp-18-18149-2018, 2018
Short summary
Short summary
Since 2007 atmospheric methane (CH4) has been unexpectedly increasing following a 6-year hiatus. We have used an atmospheric model to attribute regional sources and global sinks of CH4 using observations for the 2003–2015 period. Model results show the renewed growth is best explained by decreased atmospheric removal, decreased biomass burning emissions, and an increased energy sector (mainly from Africa–Middle East and Southern Asia–Oceania) and wetland emissions (mainly from northern Eurasia).
Anja Rammig, Jens Heinke, Florian Hofhansl, Hans Verbeeck, Timothy R. Baker, Bradley Christoffersen, Philippe Ciais, Hannes De Deurwaerder, Katrin Fleischer, David Galbraith, Matthieu Guimberteau, Andreas Huth, Michelle Johnson, Bart Krujit, Fanny Langerwisch, Patrick Meir, Phillip Papastefanou, Gilvan Sampaio, Kirsten Thonicke, Celso von Randow, Christian Zang, and Edna Rödig
Geosci. Model Dev., 11, 5203–5215, https://doi.org/10.5194/gmd-11-5203-2018, https://doi.org/10.5194/gmd-11-5203-2018, 2018
Short summary
Short summary
We propose a generic approach for a pixel-to-point comparison applicable for evaluation of models and remote-sensing products. We provide statistical measures accounting for the uncertainty in ecosystem variables. We demonstrate our approach by comparing simulated values of aboveground biomass, woody productivity and residence time of woody biomass from four dynamic global vegetation models (DGVMs) with measured inventory data from permanent plots in the Amazon rainforest.
Corinne Le Quéré, Robbie M. Andrew, Pierre Friedlingstein, Stephen Sitch, Judith Hauck, Julia Pongratz, Penelope A. Pickers, Jan Ivar Korsbakken, Glen P. Peters, Josep G. Canadell, Almut Arneth, Vivek K. Arora, Leticia Barbero, Ana Bastos, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Philippe Ciais, Scott C. Doney, Thanos Gkritzalis, Daniel S. Goll, Ian Harris, Vanessa Haverd, Forrest M. Hoffman, Mario Hoppema, Richard A. Houghton, George Hurtt, Tatiana Ilyina, Atul K. Jain, Truls Johannessen, Chris D. Jones, Etsushi Kato, Ralph F. Keeling, Kees Klein Goldewijk, Peter Landschützer, Nathalie Lefèvre, Sebastian Lienert, Zhu Liu, Danica Lombardozzi, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-ichiro Nakaoka, Craig Neill, Are Olsen, Tsueno Ono, Prabir Patra, Anna Peregon, Wouter Peters, Philippe Peylin, Benjamin Pfeil, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Matthias Rocher, Christian Rödenbeck, Ute Schuster, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Tobias Steinhoff, Adrienne Sutton, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Ingrid T. van der Laan-Luijkx, Guido R. van der Werf, Nicolas Viovy, Anthony P. Walker, Andrew J. Wiltshire, Rebecca Wright, Sönke Zaehle, and Bo Zheng
Earth Syst. Sci. Data, 10, 2141–2194, https://doi.org/10.5194/essd-10-2141-2018, https://doi.org/10.5194/essd-10-2141-2018, 2018
Short summary
Short summary
The Global Carbon Budget 2018 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Chris Huntingford, Rebecca J. Oliver, Lina M. Mercado, and Stephen Sitch
Biogeosciences, 15, 5415–5422, https://doi.org/10.5194/bg-15-5415-2018, https://doi.org/10.5194/bg-15-5415-2018, 2018
Short summary
Short summary
Raised ozone levels impact plant stomatal opening and thus photosynthesis. Most models describe this as a suppression of stomata opening. Field evidence suggests more complexity, as ozone damage may make stomatal response
sluggish. In some circumstances, this causes stomata to be more open – a concern during drought conditions – by increasing transpiration. To guide interpretation and modelling of field measurements, we present an equation for sluggish effects, via a single tau parameter.
Paul I. Palmer, Simon O'Doherty, Grant Allen, Keith Bower, Hartmut Bösch, Martyn P. Chipperfield, Sarah Connors, Sandip Dhomse, Liang Feng, Douglas P. Finch, Martin W. Gallagher, Emanuel Gloor, Siegfried Gonzi, Neil R. P. Harris, Carole Helfter, Neil Humpage, Brian Kerridge, Diane Knappett, Roderic L. Jones, Michael Le Breton, Mark F. Lunt, Alistair J. Manning, Stephan Matthiesen, Jennifer B. A. Muller, Neil Mullinger, Eiko Nemitz, Sebastian O'Shea, Robert J. Parker, Carl J. Percival, Joseph Pitt, Stuart N. Riddick, Matthew Rigby, Harjinder Sembhi, Richard Siddans, Robert L. Skelton, Paul Smith, Hannah Sonderfeld, Kieran Stanley, Ann R. Stavert, Angelina Wenger, Emily White, Christopher Wilson, and Dickon Young
Atmos. Chem. Phys., 18, 11753–11777, https://doi.org/10.5194/acp-18-11753-2018, https://doi.org/10.5194/acp-18-11753-2018, 2018
Short summary
Short summary
This paper provides an overview of the Greenhouse gAs Uk and Global Emissions (GAUGE) experiment. GAUGE was designed to quantify nationwide GHG emissions of the UK, bringing together measurements and atmospheric transport models. This novel experiment is the first of its kind. We anticipate it will inform the blueprint for countries that are building a measurement infrastructure in preparation for global stocktakes, which are a key part of the Paris Agreement.
Jun Wang, Ning Zeng, Meirong Wang, Fei Jiang, Jingming Chen, Pierre Friedlingstein, Atul K. Jain, Ziqiang Jiang, Weimin Ju, Sebastian Lienert, Julia Nabel, Stephen Sitch, Nicolas Viovy, Hengmao Wang, and Andrew J. Wiltshire
Atmos. Chem. Phys., 18, 10333–10345, https://doi.org/10.5194/acp-18-10333-2018, https://doi.org/10.5194/acp-18-10333-2018, 2018
Short summary
Short summary
Based on the Mauna Loa CO2 records and TRENDY multi-model historical simulations, we investigate the different impacts of EP and CP El Niños on interannual carbon cycle variability. Composite analysis indicates that the evolutions of CO2 growth rate anomalies have three clear differences in terms of precursors (negative and neutral), amplitudes (strong and weak), and durations of peak (Dec–Apr and Oct–Jan) during EP and CP El Niños, respectively. We further discuss their terrestrial mechanisms.
Rebecca J. Oliver, Lina M. Mercado, Stephen Sitch, David Simpson, Belinda E. Medlyn, Yan-Shih Lin, and Gerd A. Folberth
Biogeosciences, 15, 4245–4269, https://doi.org/10.5194/bg-15-4245-2018, https://doi.org/10.5194/bg-15-4245-2018, 2018
Short summary
Short summary
Potential gains in terrestrial carbon sequestration over Europe from elevated CO2 can be partially offset by concurrent rises in tropospheric O3. The land surface model JULES was run in a factorial suite of experiments showing that by 2050 simulated GPP was reduced by 4 to 9 % due to plant O3 damage. Large regional variations exist with larger impacts identified for temperate compared to boreal regions. Plant O3 damage was greatest over the twentieth century and declined into the future.
Anna B. Harper, Andrew J. Wiltshire, Peter M. Cox, Pierre Friedlingstein, Chris D. Jones, Lina M. Mercado, Stephen Sitch, Karina Williams, and Carolina Duran-Rojas
Geosci. Model Dev., 11, 2857–2873, https://doi.org/10.5194/gmd-11-2857-2018, https://doi.org/10.5194/gmd-11-2857-2018, 2018
Short summary
Short summary
Dynamic global vegetation models are used for studying historical and future changes to vegetation and the terrestrial carbon cycle. JULES is a DGVM that represents the land surface in the UK Earth System Model. We compared simulated gross and net primary productivity of vegetation, vegetation distribution, and aspects of the transient carbon cycle to observational datasets. JULES was able to accurately reproduce many aspects of the terrestrial carbon cycle with the recent improvements.
Gregory Duveiller, Giovanni Forzieri, Eddy Robertson, Wei Li, Goran Georgievski, Peter Lawrence, Andy Wiltshire, Philippe Ciais, Julia Pongratz, Stephen Sitch, Almut Arneth, and Alessandro Cescatti
Earth Syst. Sci. Data, 10, 1265–1279, https://doi.org/10.5194/essd-10-1265-2018, https://doi.org/10.5194/essd-10-1265-2018, 2018
Short summary
Short summary
Changing the vegetation cover of the Earth's surface can alter the local energy balance, which can result in a local warming or cooling depending on the specific vegetation transition, its timing and location, as well as on the background climate. While models can theoretically simulate these effects, their skill is not well documented across space and time. Here we provide a dedicated framework to evaluate such models against measurements derived from satellite observations.
Tommaso Jucker, Gregory P. Asner, Michele Dalponte, Philip G. Brodrick, Christopher D. Philipson, Nicholas R. Vaughn, Yit Arn Teh, Craig Brelsford, David F. R. P. Burslem, Nicolas J. Deere, Robert M. Ewers, Jakub Kvasnica, Simon L. Lewis, Yadvinder Malhi, Sol Milne, Reuben Nilus, Marion Pfeifer, Oliver L. Phillips, Lan Qie, Nathan Renneboog, Glen Reynolds, Terhi Riutta, Matthew J. Struebig, Martin Svátek, Edgar C. Turner, and David A. Coomes
Biogeosciences, 15, 3811–3830, https://doi.org/10.5194/bg-15-3811-2018, https://doi.org/10.5194/bg-15-3811-2018, 2018
Short summary
Short summary
Efforts to protect tropical forests hinge on recognizing the ecosystem services they provide, including their ability to store carbon. Airborne laser scanning (ALS) captures information on the 3-D structure of forests, allowing carbon stocks to be mapped. By combining ALS with data from 173 field plots on the island of Borneo, we develop a simple yet general model for estimating forest carbon stocks from the air. Our model underpins ongoing efforts to restore Borneo's unique tropical forests.
Donghai Wu, Philippe Ciais, Nicolas Viovy, Alan K. Knapp, Kevin Wilcox, Michael Bahn, Melinda D. Smith, Sara Vicca, Simone Fatichi, Jakob Zscheischler, Yue He, Xiangyi Li, Akihiko Ito, Almut Arneth, Anna Harper, Anna Ukkola, Athanasios Paschalis, Benjamin Poulter, Changhui Peng, Daniel Ricciuto, David Reinthaler, Guangsheng Chen, Hanqin Tian, Hélène Genet, Jiafu Mao, Johannes Ingrisch, Julia E. S. M. Nabel, Julia Pongratz, Lena R. Boysen, Markus Kautz, Michael Schmitt, Patrick Meir, Qiuan Zhu, Roland Hasibeder, Sebastian Sippel, Shree R. S. Dangal, Stephen Sitch, Xiaoying Shi, Yingping Wang, Yiqi Luo, Yongwen Liu, and Shilong Piao
Biogeosciences, 15, 3421–3437, https://doi.org/10.5194/bg-15-3421-2018, https://doi.org/10.5194/bg-15-3421-2018, 2018
Short summary
Short summary
Our results indicate that most ecosystem models do not capture the observed asymmetric responses under normal precipitation conditions, suggesting an overestimate of the drought effects and/or underestimate of the watering impacts on primary productivity, which may be the result of inadequate representation of key eco-hydrological processes. Collaboration between modelers and site investigators needs to be strengthened to improve the specific processes in ecosystem models in following studies.
Corinne Le Quéré, Robbie M. Andrew, Pierre Friedlingstein, Stephen Sitch, Julia Pongratz, Andrew C. Manning, Jan Ivar Korsbakken, Glen P. Peters, Josep G. Canadell, Robert B. Jackson, Thomas A. Boden, Pieter P. Tans, Oliver D. Andrews, Vivek K. Arora, Dorothee C. E. Bakker, Leticia Barbero, Meike Becker, Richard A. Betts, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Philippe Ciais, Catherine E. Cosca, Jessica Cross, Kim Currie, Thomas Gasser, Ian Harris, Judith Hauck, Vanessa Haverd, Richard A. Houghton, Christopher W. Hunt, George Hurtt, Tatiana Ilyina, Atul K. Jain, Etsushi Kato, Markus Kautz, Ralph F. Keeling, Kees Klein Goldewijk, Arne Körtzinger, Peter Landschützer, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Ivan Lima, Danica Lombardozzi, Nicolas Metzl, Frank Millero, Pedro M. S. Monteiro, David R. Munro, Julia E. M. S. Nabel, Shin-ichiro Nakaoka, Yukihiro Nojiri, X. Antonio Padin, Anna Peregon, Benjamin Pfeil, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Janet Reimer, Christian Rödenbeck, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Benjamin D. Stocker, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Ingrid T. van der Laan-Luijkx, Guido R. van der Werf, Steven van Heuven, Nicolas Viovy, Nicolas Vuichard, Anthony P. Walker, Andrew J. Watson, Andrew J. Wiltshire, Sönke Zaehle, and Dan Zhu
Earth Syst. Sci. Data, 10, 405–448, https://doi.org/10.5194/essd-10-405-2018, https://doi.org/10.5194/essd-10-405-2018, 2018
Short summary
Short summary
The Global Carbon Budget 2017 describes data sets and methodology to quantify the five major components of the global carbon budget and their uncertainties. It is the 12th annual update and the 6th published in this journal.
Przemyslaw Zelazowski, Chris Huntingford, Lina M. Mercado, and Nathalie Schaller
Geosci. Model Dev., 11, 541–560, https://doi.org/10.5194/gmd-11-541-2018, https://doi.org/10.5194/gmd-11-541-2018, 2018
Short summary
Short summary
This paper describes the calibration of the IMOGEN (Integrated Model Of Global Effects of climatic aNomalies) impact modelling system against 22 global climate models (GCMs) in the CMIP3 database.
IMOGEN uses "pattern scaling" to emulate GCMs, and with such linearity enables projections to be made for alternative future scenarios of atmospheric greenhouse gas concentrations. It is also coupled to the JULES land surface model, to allow impact assessments.
IMOGEN uses "pattern scaling" to emulate GCMs, and with such linearity enables projections to be made for alternative future scenarios of atmospheric greenhouse gas concentrations. It is also coupled to the JULES land surface model, to allow impact assessments.
Demerval S. Moreira, Karla M. Longo, Saulo R. Freitas, Marcia A. Yamasoe, Lina M. Mercado, Nilton E. Rosário, Emauel Gloor, Rosane S. M. Viana, John B. Miller, Luciana V. Gatti, Kenia T. Wiedemann, Lucas K. G. Domingues, and Caio C. S. Correia
Atmos. Chem. Phys., 17, 14785–14810, https://doi.org/10.5194/acp-17-14785-2017, https://doi.org/10.5194/acp-17-14785-2017, 2017
Short summary
Short summary
Fire in the Amazon forest produces a large amount of smoke that is released into the atmosphere and covers a large portion of South America for about 3 months each year. The smoke affects the energy and CO2 budgets. Using a numerical atmospheric model, we demonstrated that the smoke changes the forest from a source to a sink of CO2 to the atmosphere. The smoke ultimately acts to at least partially compensate for the forest carbon lost due to fire emissions.
Wei Li, Philippe Ciais, Shushi Peng, Chao Yue, Yilong Wang, Martin Thurner, Sassan S. Saatchi, Almut Arneth, Valerio Avitabile, Nuno Carvalhais, Anna B. Harper, Etsushi Kato, Charles Koven, Yi Y. Liu, Julia E.M.S. Nabel, Yude Pan, Julia Pongratz, Benjamin Poulter, Thomas A. M. Pugh, Maurizio Santoro, Stephen Sitch, Benjamin D. Stocker, Nicolas Viovy, Andy Wiltshire, Rasoul Yousefpour, and Sönke Zaehle
Biogeosciences, 14, 5053–5067, https://doi.org/10.5194/bg-14-5053-2017, https://doi.org/10.5194/bg-14-5053-2017, 2017
Short summary
Short summary
We used several observation-based biomass datasets to constrain the historical land-use change carbon emissions simulated by models. Compared to the range of the original modeled emissions (from 94 to 273 Pg C), the observationally constrained global cumulative emission estimate is 155 ± 50 Pg C (1σ Gaussian error) from 1901 to 2012. Our approach can also be applied to evaluate the LULCC impact of land-based climate mitigation policies.
Reinhard Prestele, Almut Arneth, Alberte Bondeau, Nathalie de Noblet-Ducoudré, Thomas A. M. Pugh, Stephen Sitch, Elke Stehfest, and Peter H. Verburg
Earth Syst. Dynam., 8, 369–386, https://doi.org/10.5194/esd-8-369-2017, https://doi.org/10.5194/esd-8-369-2017, 2017
Short summary
Short summary
Land-use change is still overly simplistically implemented in global ecosystem and climate models. We identify and discuss three major challenges at the interface of land-use and climate modeling and propose ways for how to improve land-use representation in climate models. We conclude that land-use data-provider and user communities need to engage in the joint development and evaluation of enhanced land-use datasets to improve the quantification of land use–climate interactions and feedback.
Liang Feng, Paul I. Palmer, Hartmut Bösch, Robert J. Parker, Alex J. Webb, Caio S. C. Correia, Nicholas M. Deutscher, Lucas G. Domingues, Dietrich G. Feist, Luciana V. Gatti, Emanuel Gloor, Frank Hase, Rigel Kivi, Yi Liu, John B. Miller, Isamu Morino, Ralf Sussmann, Kimberly Strong, Osamu Uchino, Jing Wang, and Andreas Zahn
Atmos. Chem. Phys., 17, 4781–4797, https://doi.org/10.5194/acp-17-4781-2017, https://doi.org/10.5194/acp-17-4781-2017, 2017
Short summary
Short summary
We use the GEOS-Chem global 3-D model of atmospheric chemistry and transport and an ensemble Kalman filter to simultaneously infer regional fluxes of methane (CH4) and carbon dioxide (CO2) directly from GOSAT retrievals of XCH4:XCO2, using sparse ground-based CH4 and CO2 mole fraction data to anchor the ratio. Our results show that assimilation of GOSAT data significantly reduced the posterior uncertainty and changed the a priori spatial distribution of CH4 emissions.
Sam S. Rabin, Joe R. Melton, Gitta Lasslop, Dominique Bachelet, Matthew Forrest, Stijn Hantson, Jed O. Kaplan, Fang Li, Stéphane Mangeon, Daniel S. Ward, Chao Yue, Vivek K. Arora, Thomas Hickler, Silvia Kloster, Wolfgang Knorr, Lars Nieradzik, Allan Spessa, Gerd A. Folberth, Tim Sheehan, Apostolos Voulgarakis, Douglas I. Kelley, I. Colin Prentice, Stephen Sitch, Sandy Harrison, and Almut Arneth
Geosci. Model Dev., 10, 1175–1197, https://doi.org/10.5194/gmd-10-1175-2017, https://doi.org/10.5194/gmd-10-1175-2017, 2017
Short summary
Short summary
Global vegetation models are important tools for understanding how the Earth system will change in the future, and fire is a critical process to include. A number of different methods have been developed to represent vegetation burning. This paper describes the protocol for the first systematic comparison of global fire models, which will allow the community to explore various drivers and evaluate what mechanisms are important for improving performance. It also includes equations for all models.
Matthieu Guimberteau, Philippe Ciais, Agnès Ducharne, Juan Pablo Boisier, Ana Paula Dutra Aguiar, Hester Biemans, Hannes De Deurwaerder, David Galbraith, Bart Kruijt, Fanny Langerwisch, German Poveda, Anja Rammig, Daniel Andres Rodriguez, Graciela Tejada, Kirsten Thonicke, Celso Von Randow, Rita C. S. Von Randow, Ke Zhang, and Hans Verbeeck
Hydrol. Earth Syst. Sci., 21, 1455–1475, https://doi.org/10.5194/hess-21-1455-2017, https://doi.org/10.5194/hess-21-1455-2017, 2017
Bradley O. Christoffersen, Manuel Gloor, Sophie Fauset, Nikolaos M. Fyllas, David R. Galbraith, Timothy R. Baker, Bart Kruijt, Lucy Rowland, Rosie A. Fisher, Oliver J. Binks, Sanna Sevanto, Chonggang Xu, Steven Jansen, Brendan Choat, Maurizio Mencuccini, Nate G. McDowell, and Patrick Meir
Geosci. Model Dev., 9, 4227–4255, https://doi.org/10.5194/gmd-9-4227-2016, https://doi.org/10.5194/gmd-9-4227-2016, 2016
Short summary
Short summary
We developed a plant hydraulics model for tropical forests based on established plant physiological theory, and parameterized it by conducting a pantropical hydraulic trait survey. We show that a substantial amount of trait diversity can be represented in the model by a reduced set of trait dimensions. The fully parameterized model is able capture tree-level variation in water status and improves simulations of total ecosystem transpiration, showing how to incorporate hydraulic traits in models.
Corinne Le Quéré, Robbie M. Andrew, Josep G. Canadell, Stephen Sitch, Jan Ivar Korsbakken, Glen P. Peters, Andrew C. Manning, Thomas A. Boden, Pieter P. Tans, Richard A. Houghton, Ralph F. Keeling, Simone Alin, Oliver D. Andrews, Peter Anthoni, Leticia Barbero, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Philippe Ciais, Kim Currie, Christine Delire, Scott C. Doney, Pierre Friedlingstein, Thanos Gkritzalis, Ian Harris, Judith Hauck, Vanessa Haverd, Mario Hoppema, Kees Klein Goldewijk, Atul K. Jain, Etsushi Kato, Arne Körtzinger, Peter Landschützer, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Danica Lombardozzi, Joe R. Melton, Nicolas Metzl, Frank Millero, Pedro M. S. Monteiro, David R. Munro, Julia E. M. S. Nabel, Shin-ichiro Nakaoka, Kevin O'Brien, Are Olsen, Abdirahman M. Omar, Tsuneo Ono, Denis Pierrot, Benjamin Poulter, Christian Rödenbeck, Joe Salisbury, Ute Schuster, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Benjamin D. Stocker, Adrienne J. Sutton, Taro Takahashi, Hanqin Tian, Bronte Tilbrook, Ingrid T. van der Laan-Luijkx, Guido R. van der Werf, Nicolas Viovy, Anthony P. Walker, Andrew J. Wiltshire, and Sönke Zaehle
Earth Syst. Sci. Data, 8, 605–649, https://doi.org/10.5194/essd-8-605-2016, https://doi.org/10.5194/essd-8-605-2016, 2016
Short summary
Short summary
The Global Carbon Budget 2016 is the 11th annual update of emissions of carbon dioxide (CO2) and their partitioning among the atmosphere, land, and ocean. This data synthesis brings together measurements, statistical information, and analyses of model results in order to provide an assessment of the global carbon budget and their uncertainties for years 1959 to 2015, with a projection for year 2016.
Kaniska Mallick, Ivonne Trebs, Eva Boegh, Laura Giustarini, Martin Schlerf, Darren T. Drewry, Lucien Hoffmann, Celso von Randow, Bart Kruijt, Alessandro Araùjo, Scott Saleska, James R. Ehleringer, Tomas F. Domingues, Jean Pierre H. B. Ometto, Antonio D. Nobre, Osvaldo Luiz Leal de Moraes, Matthew Hayek, J. William Munger, and Steven C. Wofsy
Hydrol. Earth Syst. Sci., 20, 4237–4264, https://doi.org/10.5194/hess-20-4237-2016, https://doi.org/10.5194/hess-20-4237-2016, 2016
Short summary
Short summary
While quantifying vegetation water use over multiple plant function types in the Amazon Basin, we found substantial biophysical control during drought as well as a water-stress period and dominant climatic control during a water surplus period. This work has direct implication in understanding the resilience of the Amazon forest in the spectre of frequent drought menace as well as the role of drought-induced plant biophysical functioning in modulating the water-carbon coupling in this ecosystem.
Fang Zhao, Ning Zeng, Ghassem Asrar, Pierre Friedlingstein, Akihiko Ito, Atul Jain, Eugenia Kalnay, Etsushi Kato, Charles D. Koven, Ben Poulter, Rashid Rafique, Stephen Sitch, Shijie Shu, Beni Stocker, Nicolas Viovy, Andy Wiltshire, and Sonke Zaehle
Biogeosciences, 13, 5121–5137, https://doi.org/10.5194/bg-13-5121-2016, https://doi.org/10.5194/bg-13-5121-2016, 2016
Short summary
Short summary
The increasing seasonality of atmospheric CO2 is strongly linked with enhanced land vegetation activities in the last 5 decades, for which the importance of increasing CO2, climate and land use/cover change was evaluated in single model studies (Zeng et al., 2014; Forkel et al., 2016). Here we examine the relative importance of these factors in multiple models. Our results highlight models can show similar results in some benchmarks with different underlying regional dynamics.
M. N. Deeter, S. Martínez-Alonso, L. V. Gatti, M. Gloor, J. B. Miller, L. G. Domingues, and C. S. C. Correia
Atmos. Meas. Tech., 9, 3999–4012, https://doi.org/10.5194/amt-9-3999-2016, https://doi.org/10.5194/amt-9-3999-2016, 2016
Short summary
Short summary
Satellite methods allow biomass burning emissions to be accurately quantified with high spatial and temporal resolution. With that ultimate goal, we analyze satellite retrievals of carbon monoxide from the MOPITT instrument over the Amazon Basin. Validation results for four Amazonian sites indicate a significant negative bias in retrieved lower-tropospheric CO concentrations. The interannual variability of biomass burning emissions from 2000 to 2015 is also studied using the MOPITT record.
Stéphane Mangeon, Apostolos Voulgarakis, Richard Gilham, Anna Harper, Stephen Sitch, and Gerd Folberth
Geosci. Model Dev., 9, 2685–2700, https://doi.org/10.5194/gmd-9-2685-2016, https://doi.org/10.5194/gmd-9-2685-2016, 2016
Short summary
Short summary
To understand the role of fires in the Earth system, global fire models are required. In this paper we describe the INteractive Fire and Emission algoRithm for Natural envirOnments (INFERNO). It follows a reduced complexity approach using mainly temperature, humidity and precipitation. INFERNO was found to perform well on a global scale and to maintain regional patterns over the 1997–2011 period of study, despite regional biases particularly linked to fuel consumption.
Anna B. Harper, Peter M. Cox, Pierre Friedlingstein, Andy J. Wiltshire, Chris D. Jones, Stephen Sitch, Lina M. Mercado, Margriet Groenendijk, Eddy Robertson, Jens Kattge, Gerhard Bönisch, Owen K. Atkin, Michael Bahn, Johannes Cornelissen, Ülo Niinemets, Vladimir Onipchenko, Josep Peñuelas, Lourens Poorter, Peter B. Reich, Nadjeda A. Soudzilovskaia, and Peter van Bodegom
Geosci. Model Dev., 9, 2415–2440, https://doi.org/10.5194/gmd-9-2415-2016, https://doi.org/10.5194/gmd-9-2415-2016, 2016
Short summary
Short summary
Dynamic global vegetation models (DGVMs) are used to predict the response of vegetation to climate change. We improved the representation of carbon uptake by ecosystems in a DGVM by including a wider range of trade-offs between nutrient allocation to photosynthetic capacity and leaf structure, based on observed plant traits from a worldwide data base. The improved model has higher rates of photosynthesis and net C uptake by plants, and more closely matches observations at site and global scales.
Stijn Hantson, Almut Arneth, Sandy P. Harrison, Douglas I. Kelley, I. Colin Prentice, Sam S. Rabin, Sally Archibald, Florent Mouillot, Steve R. Arnold, Paulo Artaxo, Dominique Bachelet, Philippe Ciais, Matthew Forrest, Pierre Friedlingstein, Thomas Hickler, Jed O. Kaplan, Silvia Kloster, Wolfgang Knorr, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Andrea Meyn, Stephen Sitch, Allan Spessa, Guido R. van der Werf, Apostolos Voulgarakis, and Chao Yue
Biogeosciences, 13, 3359–3375, https://doi.org/10.5194/bg-13-3359-2016, https://doi.org/10.5194/bg-13-3359-2016, 2016
Short summary
Short summary
Our ability to predict the magnitude and geographic pattern of past and future fire impacts rests on our ability to model fire regimes. A large variety of models exist, and it is unclear which type of model or degree of complexity is required to model fire adequately at regional to global scales. In this paper we summarize the current state of the art in fire-regime modelling and model evaluation, and outline what lessons may be learned from the Fire Model Intercomparison Project – FireMIP.
Fabien H. Wagner, Bruno Hérault, Damien Bonal, Clément Stahl, Liana O. Anderson, Timothy R. Baker, Gabriel Sebastian Becker, Hans Beeckman, Danilo Boanerges Souza, Paulo Cesar Botosso, David M. J. S. Bowman, Achim Bräuning, Benjamin Brede, Foster Irving Brown, Jesus Julio Camarero, Plínio Barbosa Camargo, Fernanda C. G. Cardoso, Fabrício Alvim Carvalho, Wendeson Castro, Rubens Koloski Chagas, Jérome Chave, Emmanuel N. Chidumayo, Deborah A. Clark, Flavia Regina Capellotto Costa, Camille Couralet, Paulo Henrique da Silva Mauricio, Helmut Dalitz, Vinicius Resende de Castro, Jaçanan Eloisa de Freitas Milani, Edilson Consuelo de Oliveira, Luciano de Souza Arruda, Jean-Louis Devineau, David M. Drew, Oliver Dünisch, Giselda Durigan, Elisha Elifuraha, Marcio Fedele, Ligia Ferreira Fedele, Afonso Figueiredo Filho, César Augusto Guimarães Finger, Augusto César Franco, João Lima Freitas Júnior, Franklin Galvão, Aster Gebrekirstos, Robert Gliniars, Paulo Maurício Lima de Alencastro Graça, Anthony D. Griffiths, James Grogan, Kaiyu Guan, Jürgen Homeier, Maria Raquel Kanieski, Lip Khoon Kho, Jennifer Koenig, Sintia Valerio Kohler, Julia Krepkowski, José Pires Lemos-Filho, Diana Lieberman, Milton Eugene Lieberman, Claudio Sergio Lisi, Tomaz Longhi Santos, José Luis López Ayala, Eduardo Eijji Maeda, Yadvinder Malhi, Vivian R. B. Maria, Marcia C. M. Marques, Renato Marques, Hector Maza Chamba, Lawrence Mbwambo, Karina Liana Lisboa Melgaço, Hooz Angela Mendivelso, Brett P. Murphy, Joseph J. O'Brien, Steven F. Oberbauer, Naoki Okada, Raphaël Pélissier, Lynda D. Prior, Fidel Alejandro Roig, Michael Ross, Davi Rodrigo Rossatto, Vivien Rossi, Lucy Rowland, Ervan Rutishauser, Hellen Santana, Mark Schulze, Diogo Selhorst, Williamar Rodrigues Silva, Marcos Silveira, Susanne Spannl, Michael D. Swaine, José Julio Toledo, Marcos Miranda Toledo, Marisol Toledo, Takeshi Toma, Mario Tomazello Filho, Juan Ignacio Valdez Hernández, Jan Verbesselt, Simone Aparecida Vieira, Grégoire Vincent, Carolina Volkmer de Castilho, Franziska Volland, Martin Worbes, Magda Lea Bolzan Zanon, and Luiz E. O. C. Aragão
Biogeosciences, 13, 2537–2562, https://doi.org/10.5194/bg-13-2537-2016, https://doi.org/10.5194/bg-13-2537-2016, 2016
Sudhanshu Pandey, Sander Houweling, Maarten Krol, Ilse Aben, Frédéric Chevallier, Edward J. Dlugokencky, Luciana V. Gatti, Emanuel Gloor, John B. Miller, Rob Detmers, Toshinobu Machida, and Thomas Röckmann
Atmos. Chem. Phys., 16, 5043–5062, https://doi.org/10.5194/acp-16-5043-2016, https://doi.org/10.5194/acp-16-5043-2016, 2016
Short summary
Short summary
This study investigates the constraint provided by measurements of Xratio (XCH4/XCO2) from space on surface fluxes of CH4 and CO2. We apply the ratio inversion method described in Pandey et al. (2015) to Xratio retrievals from the GOSAT with the TM5-4DVAR inverse modeling system, to constrain the surface fluxes of CH4 and CO2 for 2009 and 2010. The results are compared to proxy CH4 inversions using model-derived-XCO2 mixing ratios from CarbonTracker and MACC.
J. Lloyd and E. M. Veenendaal
Biogeosciences Discuss., https://doi.org/10.5194/bg-2015-660, https://doi.org/10.5194/bg-2015-660, 2016
Revised manuscript not accepted
Short summary
Short summary
Fire has been proposed as the key driver of tropical forest and savanna biome distributions with many tropical ecologists believing that these biomes constitute alternate stable states (ASS). Contributing to an ongoing debate as evidence supporting the existence of ASS in the terrestrial tropics, we find all current arguments presented as supporting the existence of ASS to be flawed, with five specific fallacious argumentation types identified.
K. E. Clark, A. J. West, R. G. Hilton, G. P. Asner, C. A. Quesada, M. R. Silman, S. S. Saatchi, W. Farfan-Rios, R. E. Martin, A. B. Horwath, K. Halladay, M. New, and Y. Malhi
Earth Surf. Dynam., 4, 47–70, https://doi.org/10.5194/esurf-4-47-2016, https://doi.org/10.5194/esurf-4-47-2016, 2016
Short summary
Short summary
The key findings of this paper are that landslides in the eastern Andes of Peru in the Kosñipata Valley rapidly turn over the landscape in ~1320 years, with a rate of 0.076% yr-1. Additionally, landslides were concentrated at lower elevations, due to an intense storm in 2010 accounting for ~1/4 of the total landslide area over the 25-year remote sensing study. Valley-wide carbon stocks were determined, and we estimate that 26 tC km-2 yr-1 of soil and biomass are stripped by landslides.
G. Murray-Tortarolo, P. Friedlingstein, S. Sitch, V. J. Jaramillo, F. Murguía-Flores, A. Anav, Y. Liu, A. Arneth, A. Arvanitis, A. Harper, A. Jain, E. Kato, C. Koven, B. Poulter, B. D. Stocker, A. Wiltshire, S. Zaehle, and N. Zeng
Biogeosciences, 13, 223–238, https://doi.org/10.5194/bg-13-223-2016, https://doi.org/10.5194/bg-13-223-2016, 2016
Short summary
Short summary
We modelled the carbon (C) cycle in Mexico for three different time periods: past (20th century), present (2000-2005) and future (2006-2100). We used different available products to estimate C stocks and fluxes in the country. Contrary to other current estimates, our results showed that Mexico was a C sink and this is likely to continue in the next century (unless the most extreme climate-change scenarios are reached).
C. Le Quéré, R. Moriarty, R. M. Andrew, J. G. Canadell, S. Sitch, J. I. Korsbakken, P. Friedlingstein, G. P. Peters, R. J. Andres, T. A. Boden, R. A. Houghton, J. I. House, R. F. Keeling, P. Tans, A. Arneth, D. C. E. Bakker, L. Barbero, L. Bopp, J. Chang, F. Chevallier, L. P. Chini, P. Ciais, M. Fader, R. A. Feely, T. Gkritzalis, I. Harris, J. Hauck, T. Ilyina, A. K. Jain, E. Kato, V. Kitidis, K. Klein Goldewijk, C. Koven, P. Landschützer, S. K. Lauvset, N. Lefèvre, A. Lenton, I. D. Lima, N. Metzl, F. Millero, D. R. Munro, A. Murata, J. E. M. S. Nabel, S. Nakaoka, Y. Nojiri, K. O'Brien, A. Olsen, T. Ono, F. F. Pérez, B. Pfeil, D. Pierrot, B. Poulter, G. Rehder, C. Rödenbeck, S. Saito, U. Schuster, J. Schwinger, R. Séférian, T. Steinhoff, B. D. Stocker, A. J. Sutton, T. Takahashi, B. Tilbrook, I. T. van der Laan-Luijkx, G. R. van der Werf, S. van Heuven, D. Vandemark, N. Viovy, A. Wiltshire, S. Zaehle, and N. Zeng
Earth Syst. Sci. Data, 7, 349–396, https://doi.org/10.5194/essd-7-349-2015, https://doi.org/10.5194/essd-7-349-2015, 2015
Short summary
Short summary
Accurate assessment of anthropogenic carbon dioxide emissions and their redistribution among the atmosphere, ocean, and terrestrial biosphere is important to understand the global carbon cycle, support the development of climate policies, and project future climate change. We describe data sets and a methodology to quantify all major components of the global carbon budget, including their uncertainties, based on a range of data and models and their interpretation by a broad scientific community.
J. Lloyd, T. F. Domingues, F. Schrodt, F. Y. Ishida, T. R. Feldpausch, G. Saiz, C. A. Quesada, M. Schwarz, M. Torello-Raventos, M. Gilpin, B. S. Marimon, B. H. Marimon-Junior, J. A. Ratter, J. Grace, G. B. Nardoto, E. Veenendaal, L. Arroyo, D. Villarroel, T. J. Killeen, M. Steininger, and O. L. Phillips
Biogeosciences, 12, 6529–6571, https://doi.org/10.5194/bg-12-6529-2015, https://doi.org/10.5194/bg-12-6529-2015, 2015
Short summary
Short summary
Across tropical South America, forest soils are typically of a higher cation status than their savanna equivalents with soil exchangeable potassium a key soil nutrient differentiating these two vegetation types. Differences in soil water storage capacity are also important – interacting with both potassium availability and precipitation regimes in a relatively complex manner.
M. O. Andreae, O. C. Acevedo, A. Araùjo, P. Artaxo, C. G. G. Barbosa, H. M. J. Barbosa, J. Brito, S. Carbone, X. Chi, B. B. L. Cintra, N. F. da Silva, N. L. Dias, C. Q. Dias-Júnior, F. Ditas, R. Ditz, A. F. L. Godoi, R. H. M. Godoi, M. Heimann, T. Hoffmann, J. Kesselmeier, T. Könemann, M. L. Krüger, J. V. Lavric, A. O. Manzi, A. P. Lopes, D. L. Martins, E. F. Mikhailov, D. Moran-Zuloaga, B. W. Nelson, A. C. Nölscher, D. Santos Nogueira, M. T. F. Piedade, C. Pöhlker, U. Pöschl, C. A. Quesada, L. V. Rizzo, C.-U. Ro, N. Ruckteschler, L. D. A. Sá, M. de Oliveira Sá, C. B. Sales, R. M. N. dos Santos, J. Saturno, J. Schöngart, M. Sörgel, C. M. de Souza, R. A. F. de Souza, H. Su, N. Targhetta, J. Tóta, I. Trebs, S. Trumbore, A. van Eijck, D. Walter, Z. Wang, B. Weber, J. Williams, J. Winderlich, F. Wittmann, S. Wolff, and A. M. Yáñez-Serrano
Atmos. Chem. Phys., 15, 10723–10776, https://doi.org/10.5194/acp-15-10723-2015, https://doi.org/10.5194/acp-15-10723-2015, 2015
Short summary
Short summary
This paper describes the Amazon Tall Tower Observatory (ATTO), a new atmosphere-biosphere observatory located in the remote Amazon Basin. It presents results from ecosystem ecology, meteorology, trace gas, and aerosol measurements collected at the ATTO site during the first 3 years of operation.
G. Saiz, M. Bird, C. Wurster, C. A. Quesada, P. Ascough, T. Domingues, F. Schrodt, M. Schwarz, T. R. Feldpausch, E. Veenendaal, G. Djagbletey, G. Jacobsen, F. Hien, H. Compaore, A. Diallo, and J. Lloyd
Biogeosciences, 12, 5041–5059, https://doi.org/10.5194/bg-12-5041-2015, https://doi.org/10.5194/bg-12-5041-2015, 2015
Short summary
Short summary
We demonstrate and explain differential patterns in SOM dynamics in C3/C4 mixed ecosystems at various spatial scales across contrasting climate and soils. This study shows that the interdependence between biotic and abiotic factors ultimately determines whether SOM dynamics of C3- and C4-derived vegetation are at variance in ecosystems where both vegetation types coexist. The results also highlight the far-reaching implications that vegetation thickening may have for the stability of deep SOM.
E. M. Veenendaal, M. Torello-Raventos, T. R. Feldpausch, T. F. Domingues, F. Gerard, F. Schrodt, G. Saiz, C. A. Quesada, G. Djagbletey, A. Ford, J. Kemp, B. S. Marimon, B. H. Marimon-Junior, E. Lenza, J. A. Ratter, L. Maracahipes, D. Sasaki, B. Sonké, L. Zapfack, D. Villarroel, M. Schwarz, F. Yoko Ishida, M. Gilpin, G. B. Nardoto, K. Affum-Baffoe, L. Arroyo, K. Bloomfield, G. Ceca, H. Compaore, K. Davies, A. Diallo, N. M. Fyllas, J. Gignoux, F. Hien, M. Johnson, E. Mougin, P. Hiernaux, T. Killeen, D. Metcalfe, H. S. Miranda, M. Steininger, K. Sykora, M. I. Bird, J. Grace, S. Lewis, O. L. Phillips, and J. Lloyd
Biogeosciences, 12, 2927–2951, https://doi.org/10.5194/bg-12-2927-2015, https://doi.org/10.5194/bg-12-2927-2015, 2015
Short summary
Short summary
When nearby forest and savanna stands are compared, they are not as structurally different as first seems. Moreover, savanna-forest transition zones typically occur at higher rainfall for South America than for Africa but with coexistence confined to a well-defined edaphic-climate envelope. With interacting soil cation-soil water storage–precipitations effects on canopy cover also observed we argue that both soils and climate influence the location of the two major tropical vegetation types.
C. Le Quéré, R. Moriarty, R. M. Andrew, G. P. Peters, P. Ciais, P. Friedlingstein, S. D. Jones, S. Sitch, P. Tans, A. Arneth, T. A. Boden, L. Bopp, Y. Bozec, J. G. Canadell, L. P. Chini, F. Chevallier, C. E. Cosca, I. Harris, M. Hoppema, R. A. Houghton, J. I. House, A. K. Jain, T. Johannessen, E. Kato, R. F. Keeling, V. Kitidis, K. Klein Goldewijk, C. Koven, C. S. Landa, P. Landschützer, A. Lenton, I. D. Lima, G. Marland, J. T. Mathis, N. Metzl, Y. Nojiri, A. Olsen, T. Ono, S. Peng, W. Peters, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. E. Salisbury, U. Schuster, J. Schwinger, R. Séférian, J. Segschneider, T. Steinhoff, B. D. Stocker, A. J. Sutton, T. Takahashi, B. Tilbrook, G. R. van der Werf, N. Viovy, Y.-P. Wang, R. Wanninkhof, A. Wiltshire, and N. Zeng
Earth Syst. Sci. Data, 7, 47–85, https://doi.org/10.5194/essd-7-47-2015, https://doi.org/10.5194/essd-7-47-2015, 2015
Short summary
Short summary
Carbon dioxide (CO2) emissions from human activities (burning fossil fuels and cement production, deforestation and other land-use change) are set to rise again in 2014.
This study (updated yearly) makes an accurate assessment of anthropogenic CO2 emissions and their redistribution between the atmosphere, ocean, and terrestrial biosphere in order to better understand the global carbon cycle, support the development of climate policies, and project future climate change.
L. Rowland, A. Harper, B. O. Christoffersen, D. R. Galbraith, H. M. A. Imbuzeiro, T. L. Powell, C. Doughty, N. M. Levine, Y. Malhi, S. R. Saleska, P. R. Moorcroft, P. Meir, and M. Williams
Geosci. Model Dev., 8, 1097–1110, https://doi.org/10.5194/gmd-8-1097-2015, https://doi.org/10.5194/gmd-8-1097-2015, 2015
Short summary
Short summary
This study evaluates the capability of five vegetation models to simulate the response of forest productivity to changes in temperature and drought, using data collected from an Amazonian forest. This study concludes that model consistencies in the responses of net canopy carbon production to temperature and precipitation change were the result of inconsistently modelled leaf-scale process responses and substantial variation in modelled leaf area responses.
F. Pacifico, G. A. Folberth, S. Sitch, J. M. Haywood, L. V. Rizzo, F. F. Malavelle, and P. Artaxo
Atmos. Chem. Phys., 15, 2791–2804, https://doi.org/10.5194/acp-15-2791-2015, https://doi.org/10.5194/acp-15-2791-2015, 2015
S. Sitch, P. Friedlingstein, N. Gruber, S. D. Jones, G. Murray-Tortarolo, A. Ahlström, S. C. Doney, H. Graven, C. Heinze, C. Huntingford, S. Levis, P. E. Levy, M. Lomas, B. Poulter, N. Viovy, S. Zaehle, N. Zeng, A. Arneth, G. Bonan, L. Bopp, J. G. Canadell, F. Chevallier, P. Ciais, R. Ellis, M. Gloor, P. Peylin, S. L. Piao, C. Le Quéré, B. Smith, Z. Zhu, and R. Myneni
Biogeosciences, 12, 653–679, https://doi.org/10.5194/bg-12-653-2015, https://doi.org/10.5194/bg-12-653-2015, 2015
K. E. Clark, M. A. Torres, A. J. West, R. G. Hilton, M. New, A. B. Horwath, J. B. Fisher, J. M. Rapp, A. Robles Caceres, and Y. Malhi
Hydrol. Earth Syst. Sci., 18, 5377–5397, https://doi.org/10.5194/hess-18-5377-2014, https://doi.org/10.5194/hess-18-5377-2014, 2014
Short summary
Short summary
This paper presents measurements of the balance of water inputs and outputs over 1 year for a river basin in the Andes of Peru. Our results show that the annual water budget is balanced within a few percent uncertainty; that is to say, the amount of water entering the basin was the same as the amount leaving, providing important information for understanding the water cycle. We also show that seasonal storage of water is important in sustaining the flow of water during the dry season.
K. J. Bloomfield, T. F. Domingues, G. Saiz, M. I. Bird, D. M. Crayn, A. Ford, D. J. Metcalfe, G. D. Farquhar, and J. Lloyd
Biogeosciences, 11, 7331–7347, https://doi.org/10.5194/bg-11-7331-2014, https://doi.org/10.5194/bg-11-7331-2014, 2014
M. O. Johnson, M. Gloor, M. J. Kirkby, and J. Lloyd
Biogeosciences, 11, 6873–6894, https://doi.org/10.5194/bg-11-6873-2014, https://doi.org/10.5194/bg-11-6873-2014, 2014
Short summary
Short summary
We present a soil evolution model which incorporates the major processes of pedogenesis: mineral weathering, leaching, erosion, bioturbation, nutrient cycling and organic carbon inputs. We compare the modelled soil properties with soil chronosequences from Hawaii and demonstrate that the model captures well the key components of soil development. The model also highlights the important role that vegetation plays in accelerating the weathering and the release of globally important nutrients.
E. Joetzjer, C. Delire, H. Douville, P. Ciais, B. Decharme, R. Fisher, B. Christoffersen, J. C. Calvet, A. C. L. da Costa, L. V. Ferreira, and P. Meir
Geosci. Model Dev., 7, 2933–2950, https://doi.org/10.5194/gmd-7-2933-2014, https://doi.org/10.5194/gmd-7-2933-2014, 2014
M. Réjou-Méchain, H. C. Muller-Landau, M. Detto, S. C. Thomas, T. Le Toan, S. S. Saatchi, J. S. Barreto-Silva, N. A. Bourg, S. Bunyavejchewin, N. Butt, W. Y. Brockelman, M. Cao, D. Cárdenas, J.-M. Chiang, G. B. Chuyong, K. Clay, R. Condit, H. S. Dattaraja, S. J. Davies, A. Duque, S. Esufali, C. Ewango, R. H. S. Fernando, C. D. Fletcher, I. A. U. N. Gunatilleke, Z. Hao, K. E. Harms, T. B. Hart, B. Hérault, R. W. Howe, S. P. Hubbell, D. J. Johnson, D. Kenfack, A. J. Larson, L. Lin, Y. Lin, J. A. Lutz, J.-R. Makana, Y. Malhi, T. R. Marthews, R. W. McEwan, S. M. McMahon, W. J. McShea, R. Muscarella, A. Nathalang, N. S. M. Noor, C. J. Nytch, A. A. Oliveira, R. P. Phillips, N. Pongpattananurak, R. Punchi-Manage, R. Salim, J. Schurman, R. Sukumar, H. S. Suresh, U. Suwanvecho, D. W. Thomas, J. Thompson, M. Uríarte, R. Valencia, A. Vicentini, A. T. Wolf, S. Yap, Z. Yuan, C. E. Zartman, J. K. Zimmerman, and J. Chave
Biogeosciences, 11, 6827–6840, https://doi.org/10.5194/bg-11-6827-2014, https://doi.org/10.5194/bg-11-6827-2014, 2014
Short summary
Short summary
Forest carbon mapping may greatly reduce uncertainties in the global carbon budget. Accuracy of such maps depends however on the quality of field measurements. Using 30 large forest plots, we found large local spatial variability in biomass. When field calibration plots are smaller than the remote sensing pixels, this high local spatial variability results in an underestimation of the variance in biomass.
C. Wilson, M. P. Chipperfield, M. Gloor, and F. Chevallier
Geosci. Model Dev., 7, 2485–2500, https://doi.org/10.5194/gmd-7-2485-2014, https://doi.org/10.5194/gmd-7-2485-2014, 2014
J. A. Holm, J. Q. Chambers, W. D. Collins, and N. Higuchi
Biogeosciences, 11, 5773–5794, https://doi.org/10.5194/bg-11-5773-2014, https://doi.org/10.5194/bg-11-5773-2014, 2014
M. R. Raupach, M. Gloor, J. L. Sarmiento, J. G. Canadell, T. L. Frölicher, T. Gasser, R. A. Houghton, C. Le Quéré, and C. M. Trudinger
Biogeosciences, 11, 3453–3475, https://doi.org/10.5194/bg-11-3453-2014, https://doi.org/10.5194/bg-11-3453-2014, 2014
C. Le Quéré, G. P. Peters, R. J. Andres, R. M. Andrew, T. A. Boden, P. Ciais, P. Friedlingstein, R. A. Houghton, G. Marland, R. Moriarty, S. Sitch, P. Tans, A. Arneth, A. Arvanitis, D. C. E. Bakker, L. Bopp, J. G. Canadell, L. P. Chini, S. C. Doney, A. Harper, I. Harris, J. I. House, A. K. Jain, S. D. Jones, E. Kato, R. F. Keeling, K. Klein Goldewijk, A. Körtzinger, C. Koven, N. Lefèvre, F. Maignan, A. Omar, T. Ono, G.-H. Park, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. Schwinger, J. Segschneider, B. D. Stocker, T. Takahashi, B. Tilbrook, S. van Heuven, N. Viovy, R. Wanninkhof, A. Wiltshire, and S. Zaehle
Earth Syst. Sci. Data, 6, 235–263, https://doi.org/10.5194/essd-6-235-2014, https://doi.org/10.5194/essd-6-235-2014, 2014
T. R. Marthews, C. A. Quesada, D. R. Galbraith, Y. Malhi, C. E. Mullins, M. G. Hodnett, and I. Dharssi
Geosci. Model Dev., 7, 711–723, https://doi.org/10.5194/gmd-7-711-2014, https://doi.org/10.5194/gmd-7-711-2014, 2014
G. P. Asner, C. B. Anderson, R. E. Martin, D. E. Knapp, R. Tupayachi, F. Sinca, and Y. Malhi
Biogeosciences, 11, 843–856, https://doi.org/10.5194/bg-11-843-2014, https://doi.org/10.5194/bg-11-843-2014, 2014
R. Valentini, A. Arneth, A. Bombelli, S. Castaldi, R. Cazzolla Gatti, F. Chevallier, P. Ciais, E. Grieco, J. Hartmann, M. Henry, R. A. Houghton, M. Jung, W. L. Kutsch, Y. Malhi, E. Mayorga, L. Merbold, G. Murray-Tortarolo, D. Papale, P. Peylin, B. Poulter, P. A. Raymond, M. Santini, S. Sitch, G. Vaglio Laurin, G. R. van der Werf, C. A. Williams, and R. J. Scholes
Biogeosciences, 11, 381–407, https://doi.org/10.5194/bg-11-381-2014, https://doi.org/10.5194/bg-11-381-2014, 2014
B. B. L. Cintra, J. Schietti, T. Emillio, D. Martins, G. Moulatlet, P. Souza, C. Levis, C. A. Quesada, and J. Schöngart
Biogeosciences, 10, 7759–7774, https://doi.org/10.5194/bg-10-7759-2013, https://doi.org/10.5194/bg-10-7759-2013, 2013
R. Locatelli, P. Bousquet, F. Chevallier, A. Fortems-Cheney, S. Szopa, M. Saunois, A. Agusti-Panareda, D. Bergmann, H. Bian, P. Cameron-Smith, M. P. Chipperfield, E. Gloor, S. Houweling, S. R. Kawa, M. Krol, P. K. Patra, R. G. Prinn, M. Rigby, R. Saito, and C. Wilson
Atmos. Chem. Phys., 13, 9917–9937, https://doi.org/10.5194/acp-13-9917-2013, https://doi.org/10.5194/acp-13-9917-2013, 2013
D. S. Moreira, S. R. Freitas, J. P. Bonatti, L. M. Mercado, N. M. É. Rosário, K. M. Longo, J. B. Miller, M. Gloor, and L. V. Gatti
Geosci. Model Dev., 6, 1243–1259, https://doi.org/10.5194/gmd-6-1243-2013, https://doi.org/10.5194/gmd-6-1243-2013, 2013
C. Le Quéré, R. J. Andres, T. Boden, T. Conway, R. A. Houghton, J. I. House, G. Marland, G. P. Peters, G. R. van der Werf, A. Ahlström, R. M. Andrew, L. Bopp, J. G. Canadell, P. Ciais, S. C. Doney, C. Enright, P. Friedlingstein, C. Huntingford, A. K. Jain, C. Jourdain, E. Kato, R. F. Keeling, K. Klein Goldewijk, S. Levis, P. Levy, M. Lomas, B. Poulter, M. R. Raupach, J. Schwinger, S. Sitch, B. D. Stocker, N. Viovy, S. Zaehle, and N. Zeng
Earth Syst. Sci. Data, 5, 165–185, https://doi.org/10.5194/essd-5-165-2013, https://doi.org/10.5194/essd-5-165-2013, 2013
A. D. A. Castanho, M. T. Coe, M. H. Costa, Y. Malhi, D. Galbraith, and C. A. Quesada
Biogeosciences, 10, 2255–2272, https://doi.org/10.5194/bg-10-2255-2013, https://doi.org/10.5194/bg-10-2255-2013, 2013
D. A. Belikov, S. Maksyutov, M. Krol, A. Fraser, M. Rigby, H. Bian, A. Agusti-Panareda, D. Bergmann, P. Bousquet, P. Cameron-Smith, M. P. Chipperfield, A. Fortems-Cheiney, E. Gloor, K. Haynes, P. Hess, S. Houweling, S. R. Kawa, R. M. Law, Z. Loh, L. Meng, P. I. Palmer, P. K. Patra, R. G. Prinn, R. Saito, and C. Wilson
Atmos. Chem. Phys., 13, 1093–1114, https://doi.org/10.5194/acp-13-1093-2013, https://doi.org/10.5194/acp-13-1093-2013, 2013
Related subject area
Biogeosciences
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Quantifying the role of ozone-caused damage to vegetation in the Earth system: A new parameterization scheme for photosynthetic and stomatal responses
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
Exploring the Potential of History Matching for Land Surface Model Calibration
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
Using Deep Learning to integrate paleoclimate and global biogeochemistry over Phanerozoic time
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
EAT v0.9.6: a 1D testbed for physical-biogeochemical data assimilation in natural waters
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water, and nitrogen perturbations
A novel Eulerian model based on central moments to simulate age and reactivity continua interacting with mixing processes
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO, and NH3 emissions from enhanced rock weathering with croplands
Assimilation of Carbonyl Sulfide (COS) fluxes within the adjoint-based data assimilation system–Nanjing University Carbon Assimilation System (NUCAS v1.0)
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
Modeling boreal forest’s mineral soil and peat C stock dynamics with Yasso07 model coupled with updated moisture modifier
Modeling of non-structural carbohydrate dynamics by the spatially explicit individual-based dynamic global vegetation model SEIB-DGVM (SEIB-DGVM-NSC version 1.0)
MEDFATE 2.9.3: a trait-enabled model to simulate Mediterranean forest function and dynamics at regional scales
Modelling the role of livestock grazing in C and N cycling in grasslands with LPJmL5.0-grazing
Implementation of trait-based ozone plant sensitivity in the Yale Interactive terrestrial Biosphere model v1.0 to assess global vegetation damage
The Permafrost and Organic LayEr module for Forest Models (POLE-FM) 1.0
CompLaB v1.0: a scalable pore-scale model for flow, biogeochemistry, microbial metabolism, and biofilm dynamics
Validation of a new spatially explicit process-based model (HETEROFOR) to simulate structurally and compositionally complex forest stands in eastern North America
Global agricultural ammonia emissions simulated with the ORCHIDEE land surface model
ForamEcoGEnIE 2.0: incorporating symbiosis and spine traits into a trait-based global planktic foraminiferal model
FABM-NflexPD 2.0: testing an instantaneous acclimation approach for modeling the implications of phytoplankton eco-physiology for the carbon and nutrient cycles
Evaluating the vegetation–atmosphere coupling strength of ORCHIDEE land surface model (v7266)
Non-Redfieldian carbon model for the Baltic Sea (ERGOM version 1.2) – implementation and budget estimates
Implementation of a new crop phenology and irrigation scheme in the ISBA land surface model using SURFEX_v8.1
Simulating long-term responses of soil organic matter turnover to substrate stoichiometry by abstracting fast and small-scale microbial processes: the Soil Enzyme Steady Allocation Model (SESAM; v3.0)
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
Short summary
Short summary
We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
Short summary
Short summary
Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
Short summary
Short summary
Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
Short summary
Short summary
Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
Short summary
Short summary
We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
Short summary
Short summary
We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
Short summary
Short summary
By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
Short summary
Short summary
Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
Short summary
Short summary
Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
Short summary
Short summary
Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-6, https://doi.org/10.5194/gmd-2024-6, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
This study introduces a new scheme to simulate surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal response to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
Short summary
Short summary
By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
Short summary
Short summary
Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
EGUsphere, https://doi.org/10.5194/egusphere-2023-2996, https://doi.org/10.5194/egusphere-2023-2996, 2024
Short summary
Short summary
We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. Here we test a technique called “History matching” against more common approaches. This method adapts well to these models, helping better understand how they work and therefore how to make them more realistic.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
Short summary
Short summary
Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
Short summary
Short summary
To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Dongyu Zheng, Andrew Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-230, https://doi.org/10.5194/gmd-2023-230, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
This study uses a deep learning method to enhance the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model for more accurate predictions of climate shifts. The method may be critical in developing new fully-continuous methods that are able to translate over a moving continental surface in deep time with high-resolution at a reasonable computational expense.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
Short summary
Short summary
Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
Short summary
Short summary
Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-242, https://doi.org/10.5194/gmd-2023-242, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems as the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
Short summary
Short summary
This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-238, https://doi.org/10.5194/gmd-2023-238, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through “data assimilation”, which blends numerical models and observations. Here, we present EAT, a flexible and efficient testbed that allows any scientist to explore and further develop the state-of-the-art in data assimilation.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
Short summary
Short summary
Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
Short summary
Short summary
We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
Short summary
Short summary
Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
Short summary
Short summary
The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
Short summary
Short summary
We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
Short summary
Short summary
Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
Short summary
Short summary
We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
Short summary
Short summary
Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
Short summary
Short summary
In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
Short summary
Short summary
Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
EGUsphere, https://doi.org/10.5194/egusphere-2023-1955, https://doi.org/10.5194/egusphere-2023-1955, 2023
Short summary
Short summary
In this work, Nanjing University Carbon Assimilation System (NUCAS) was developed. Data assimilation experiments were conducted to demonstrate the robustness and to investigate the feasibility and applicability of NUCAS. The assimilation of COS significantly improved the model performance in gross primary productivity, sensible heat, latent heat and even soil moisture, demonstrating that COS can provide strong constraints on parameters relevant to water, energy and carbon processes.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
Short summary
Short summary
This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
Short summary
Short summary
Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Stefano Manzoni, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
EGUsphere, https://doi.org/10.5194/egusphere-2023-1523, https://doi.org/10.5194/egusphere-2023-1523, 2023
Short summary
Short summary
Improving representation of peatlands in Earth system models (ESMs) (e.g., in Yasso soil C model coupled with JSBACH model) is rare. We updated Yasso07 moisture dependency for applications on both the mineral soils and peatlands of boreal forest. Our moisture function improved the simulated peatland C stocks and CO2 dynamics. However, due to nature of the measurements used for Bayesian MCMC data assimilation, it contrasts with functions in other ESMs (see graphical abstract).
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
Short summary
Short summary
Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
Short summary
Short summary
Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
Jens Heinke, Susanne Rolinski, and Christoph Müller
Geosci. Model Dev., 16, 2455–2475, https://doi.org/10.5194/gmd-16-2455-2023, https://doi.org/10.5194/gmd-16-2455-2023, 2023
Short summary
Short summary
We develop a livestock module for the global vegetation model LPJmL5.0 to simulate the impact of grazing dairy cattle on carbon and nitrogen cycles in grasslands. A novelty of the approach is that it accounts for the effect of feed quality on feed uptake and feed utilization by animals. The portioning of dietary nitrogen into milk, feces, and urine shows very good agreement with estimates obtained from animal trials.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina M. Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander W. Cheesman, Yansen Xu, and Maria Carolina Duran Rojas
Geosci. Model Dev., 16, 2261–2276, https://doi.org/10.5194/gmd-16-2261-2023, https://doi.org/10.5194/gmd-16-2261-2023, 2023
Short summary
Short summary
Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained nor fully implemented in large-scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP, with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Winslow D. Hansen, Adrianna Foster, Benjamin Gaglioti, Rupert Seidl, and Werner Rammer
Geosci. Model Dev., 16, 2011–2036, https://doi.org/10.5194/gmd-16-2011-2023, https://doi.org/10.5194/gmd-16-2011-2023, 2023
Short summary
Short summary
Permafrost and the thick soil-surface organic layers that insulate permafrost are important controls of boreal forest dynamics and carbon cycling. However, both are rarely included in process-based vegetation models used to simulate future ecosystem trajectories. To address this challenge, we developed a computationally efficient permafrost and soil organic layer module that operates at fine spatial (1 ha) and temporal (daily) resolutions.
Heewon Jung, Hyun-Seob Song, and Christof Meile
Geosci. Model Dev., 16, 1683–1696, https://doi.org/10.5194/gmd-16-1683-2023, https://doi.org/10.5194/gmd-16-1683-2023, 2023
Short summary
Short summary
Microbial activity responsible for many chemical transformations depends on environmental conditions. These can vary locally, e.g., between poorly connected pores in porous media. We present a modeling framework that resolves such small spatial scales explicitly, accounts for feedback between transport and biogeochemical conditions, and can integrate state-of-the-art representations of microbes in a computationally efficient way, making it broadly applicable in science and engineering use cases.
Arthur Guignabert, Quentin Ponette, Frédéric André, Christian Messier, Philippe Nolet, and Mathieu Jonard
Geosci. Model Dev., 16, 1661–1682, https://doi.org/10.5194/gmd-16-1661-2023, https://doi.org/10.5194/gmd-16-1661-2023, 2023
Short summary
Short summary
Spatially explicit and process-based models are useful to test innovative forestry practices under changing and uncertain conditions. However, their larger use is often limited by the restricted range of species and stand structures they can reliably account for. We therefore calibrated and evaluated such a model, HETEROFOR, for 23 species across southern Québec. Our results showed that the model is robust and can predict accurately both individual tree growth and stand dynamics in this region.
Maureen Beaudor, Nicolas Vuichard, Juliette Lathière, Nikolaos Evangeliou, Martin Van Damme, Lieven Clarisse, and Didier Hauglustaine
Geosci. Model Dev., 16, 1053–1081, https://doi.org/10.5194/gmd-16-1053-2023, https://doi.org/10.5194/gmd-16-1053-2023, 2023
Short summary
Short summary
Ammonia mainly comes from the agricultural sector, and its volatilization relies on environmental variables. Our approach aims at benefiting from an Earth system model framework to estimate it. By doing so, we represent a consistent spatial distribution of the emissions' response to environmental changes.
We greatly improved the seasonal cycle of emissions compared with previous work. In addition, our model includes natural soil emissions (that are rarely represented in modeling approaches).
Rui Ying, Fanny M. Monteiro, Jamie D. Wilson, and Daniela N. Schmidt
Geosci. Model Dev., 16, 813–832, https://doi.org/10.5194/gmd-16-813-2023, https://doi.org/10.5194/gmd-16-813-2023, 2023
Short summary
Short summary
Planktic foraminifera are marine-calcifying zooplankton; their shells are widely used to measure past temperature and productivity. We developed ForamEcoGEnIE 2.0 to simulate the four subgroups of this organism. We found that the relative abundance distribution agrees with marine sediment core-top data and that carbon export and biomass are close to sediment trap and plankton net observations respectively. This model provides the opportunity to study foraminiferal ecology in any geological era.
Onur Kerimoglu, Markus Pahlow, Prima Anugerahanti, and Sherwood Lan Smith
Geosci. Model Dev., 16, 95–108, https://doi.org/10.5194/gmd-16-95-2023, https://doi.org/10.5194/gmd-16-95-2023, 2023
Short summary
Short summary
In classical models that track the changes in the elemental composition of phytoplankton, additional state variables are required for each element resolved. In this study, we show how the behavior of such an explicit model can be approximated using an
instantaneous acclimationapproach, in which the elemental composition of the phytoplankton is assumed to adjust to an optimal value instantaneously. Through rigorous tests, we evaluate the consistency of this scheme.
Yuan Zhang, Devaraju Narayanappa, Philippe Ciais, Wei Li, Daniel Goll, Nicolas Vuichard, Martin G. De Kauwe, Laurent Li, and Fabienne Maignan
Geosci. Model Dev., 15, 9111–9125, https://doi.org/10.5194/gmd-15-9111-2022, https://doi.org/10.5194/gmd-15-9111-2022, 2022
Short summary
Short summary
There are a few studies to examine if current models correctly represented the complex processes of transpiration. Here, we use a coefficient Ω, which indicates if transpiration is mainly controlled by vegetation processes or by turbulence, to evaluate the ORCHIDEE model. We found a good performance of ORCHIDEE, but due to compensation of biases in different processes, we also identified how different factors control Ω and where the model is wrong. Our method is generic to evaluate other models.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
Short summary
Short summary
Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Arsène Druel, Simon Munier, Anthony Mucia, Clément Albergel, and Jean-Christophe Calvet
Geosci. Model Dev., 15, 8453–8471, https://doi.org/10.5194/gmd-15-8453-2022, https://doi.org/10.5194/gmd-15-8453-2022, 2022
Short summary
Short summary
Crop phenology and irrigation is implemented into a land surface model able to work at a global scale. A case study is presented over Nebraska (USA). Simulations with and without the new scheme are compared to different satellite-based observations. The model is able to produce a realistic yearly irrigation water amount. The irrigation scheme improves the simulated leaf area index, gross primary productivity, evapotransipiration, and land surface temperature.
Thomas Wutzler, Lin Yu, Marion Schrumpf, and Sönke Zaehle
Geosci. Model Dev., 15, 8377–8393, https://doi.org/10.5194/gmd-15-8377-2022, https://doi.org/10.5194/gmd-15-8377-2022, 2022
Short summary
Short summary
Soil microbes process soil organic matter and affect carbon storage and plant nutrition at the ecosystem scale. We hypothesized that decadal dynamics is constrained by the ratios of elements in litter inputs, microbes, and matter and that microbial community optimizes growth. This allowed the SESAM model to descibe decadal-term carbon sequestration in soils and other biogeochemical processes explicitly accounting for microbial processes but without its problematic fine-scale parameterization.
Cited articles
Aragão, L. E. O. C., Malhi, Y., Metcalfe, D. B., Silva-Espejo, J. E., Jiménez, E., Navarrete, D., Almeida, S., Costa, A. C. L., Salinas, N., Phillips, O. L., Anderson, L. O., Alvarez, E., Baker, T. R., Goncalvez, P. H., Huamán-Ovalle, J., Mamani-Solórzano, M., Meir, P., Monteagudo, A., Patiño, S., Peñuela, M. C., Prieto, A., Quesada, C. A., Rozas-Dávila, A., Rudas, A., Silva Jr., J. A., and Vásquez, R.: Above- and below-ground net primary productivity across ten Amazonian forests on contrasting soils, Biogeosciences, 6, 2759–2778, https://doi.org/10.5194/bg-6-2759-2009, 2009.
Baker, T. R., Phillips, O. L., Malhi, Y., Almeida, S., Arroyo, L., Fiore, A. D., Erwin, T., Higuchi, N., Killeen, T. J., Laurance, S. G., Laurance, W. F., Lewis, S. L., Monteagudo, A., Neill, D. A., Vargas, P. N., Pitman, N. C. A., Silva, J. N. M., and Martínez, R. V.: Increasing biomass in Amazonian forest plots, Phil. Trans. R. Soc. Lond. B, 359, 353–365, https://doi.org/10.1098/rstb.2003.1422, 2004.
Baker, T. R., Phillips, O. L., Laurance, W. F., Pitman, N. C. A., Almeida, S., Arroyo, L., DiFiore, A., Erwin, T., Higuchi, N., Killeen, T. J., Laurance, S. G., Nascimento, H., Monteagudo, A., Neill, D. A., Silva, J. N. M., Malhi, Y., López Gonzalez, G., Peacock, J., Quesada, C. A., Lewis, S. L., and Lloyd, J.: Do species traits determine patterns of wood production in Amazonian forests?, Biogeosciences, 6, 297–307, https://doi.org/10.5194/bg-6-297-2009, 2009.
Baraloto, C., Timothy Paine, C. E., Patino, S., Bonal, D., Herault, B., and Chave, J.: Functional trait variation and sampling strategies in species-rich plant communities, Functional Ecol., 24, 208–216, 2010a.
Baraloto, C., Timothy Paine, C. E., Poorter, L., Beauchene, J., Bonal, D., Domenach, A. M., Hérault, B., Patiño, S., Roggy, J.-C., and Chave, J.: Decoupled leaf and stem economics in rain forest trees, Ecol. Lett., 13, 1338–1347, 2010b.
Calvo-Alvarado, J. C., McDowell, N. G., and Waring, R. H.: Allometric relationships predicting foliar biomass and leaf area: sapwood area ratio from tree height in five Costa Rican rain forest species, Tree Physiol., 28, 1601–1608, 2008.
Cannell, M. G. R. and Thornley, J. H. M.: Modelling the components of plant respiration: some guiding principles, Ann. Botany, 85, 45–54, 2000.
Castanho, A. D. A., Coe, M. T., Costa, M. H., Malhi, Y., Galbraith, D., and Quesada, C. A.: Improving simulated Amazon forest biomass and productivity by including spatial variation in biophysical parameters, Biogeosciences, 10, 2255–2272, https://doi.org/10.5194/bg-10-2255-2013, 2013.
Cavaleri, M. A., Oberbauer, S. F., and Ryan, M. G.: Foliar and ecosystem respiration in an old-growth tropical rain forest, Plant, Cell Environ., 31, 473–483, 2008.
Chao, K.-J., Phillips, O. L., Monteagudo, A., Torres-Lezama, A., and Vásquez Martínez, R.: How do trees die? Mode of death in northern Amazonia, J. Vegetation Sci., 20, 260–268, 2009.
Chave, J.: Study of structural, successional and spatial patterns in tropical rain forests using TROLL, a spatially explicit forest model, Ecol. Model., 124, 233–254, 1999.
Chave, J., Andalo, C., Brown, S., Cairns, M. A., Chambers, J. Q., Eamus, D., Fölster, H., Fromard, F., Higuchi, N., Kira, T., Lescure, J.-P., Nelson, B. W., Ogawa, H., Puig, H., Riéra, B., and Yamakura, T.: Tree allometry and improved estimation of carbon stocks and balance in tropical forests, Oecologia, 145, 87–99, 2005.
Chave, J., Coomes, D., Jansen, S., Lewis, S. L., Swenson, N. G., and Zanne, A. E.: Towards a worldwide wood economics spectrum, Ecol. Lett., 12, 351–366, 2009.
Clark, D. B., Mercado, L. M., Sitch, S., Jones, C. D., Gedney, N., Best, M. J., Pryor, M., Rooney, G. G., Essery, R. L. H., Blyth, E., Boucher, O., Harding, R. J., Huntingford, C., and Cox, P. M.: The Joint UK Land Environment Simulator (JULES), model description – Part 2: Carbon fluxes and vegetation dynamics, Geosci. Model Dev., 4, 701–722, https://doi.org/10.5194/gmd-4-701-2011, 2011.
Cox, P. M., Betts, R. A., Collins, M., Harris, P. P., Huntingford, C., and Jones, C. D.: Amazonian forest dieback under climate-carbon cycle projections for the 21st century, Theor. Appl. Climatol., 78, 137–156, 2004.
Cramer, W., Bondeau, A., Schaphoff, S., Lucht, W., Smith, B., and Sitch, S.: Tropical forests and the global carbon cycle: impacts of atmospheric carbon dioxide, climate change and rate of deforestation, Philos. Trans. Roy. Soc. London Ser. B, 359, 331–343, 2004.
DeLucia, E., Drake, J. E., Thomas, R. B., and Gonzalez-Meller, M.: Forest carbon use efficiency: is respiration a constant fraction of gross primary production?, Global Change Biol., 13, 1157–1167, 2007.
Domingues, T. F., Meir, P., Feldpausch, T. R., Saiz, G., Veenendaal, E. M., Schrodt, F., Bird, M., Djagbletey, G., Hien, F., Compaore, H., Diallo, A., Grace, J., and Lloyd, J.: Co-limitation of photosynthetic capacity by nitrogen and phosphorus in West Africa woodlands, Plant, Cell Environ., 33, 959–980, 2010.
Domingues, T. F., Martinelli, L. A., and Ehleringer, J. R.: Seasonal patterns of leaf-level photosynthetic gas exchange in an eastern Amazonian rain forest, Plant Ecol. Diversity, 7, 189–203, 2014.
Doughty, C. E., Metcalfe, D. B., da Costa, M. C., de Oliveira, A. A. R., Neto, G. F. C., Silva, J. A., Aragão, L. E. O. C., Almeida, S. S., Quesada, C. A., Girardin, C. A. J., Halladay, K., da Costa, A. C. L., and Malhi, Y.: The production, allocation and cycling of carbon in a forest on fertile terra preta soil in eastern Amazonia compared with a forest on adjacent infertile soil, Plant Ecol. Diversity, 7, 41–53, 2014.
Duponnois, R., Baudoin, E., Thioulouse, J., Hafidi, M., Galiana, A., Lebrun, M., and Prin, Y.: The Impact of Mycorrhizosphere Bacterial Communities on Soil Biofunctioning in Tropical and Mediterranean Forest Ecosystems, in: Bacteria in Agrobiology: Plant Probiotics, edited by: Maheshwari, D. K., 79–95, Springer Berlin Heidelberg, 2012.
Falster, D. S., Brännström, A., Dieckmann, U., and Westoby, M.: Influence of four major plant traits on average height, leaf-area cover, net primary productivity, and biomass density in single-species forests: a theoretical investigation, J. Ecol., 99, 148–164, 2011.
Farquhar, G. D., von Caemmerer, S., and Berry, J. A.: A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species, Planta, 149, 78–90, 1980.
Fauset, S., Baker, T. R., Lewis, S. L., Feldpausch, T. R., Affum-Baffoe, K., Foli, E. G., Hamer, K. C., and Swaine, M. D.: Drought-induced shifts in the floristic and functional composition of tropical forests in Ghana, Ecol. Lett., 15, 1120–1129, 2012.
Feldpausch, T. R., Banin, L., Phillips, O. L., Baker, T. R., Lewis, S. L., Quesada, C. A., Affum-Baffoe, K., Arets, E. J. M. M., Berry, N. J., Bird, M., Brondizio, E. S., de Camargo, P., Chave, J., Djagbletey, G., Domingues, T. F., Drescher, M., Fearnside, P. M., França, M. B., Fyllas, N. M., Lopez-Gonzalez, G., Hladik, A., Higuchi, N., Hunter, M. O., Iida, Y., Salim, K. A., Kassim, A. R., Keller, M., Kemp, J., King, D. A., Lovett, J. C., Marimon, B. S., Marimon-Junior, B. H., Lenza, E., Marshall, A. R., Metcalfe, D. J., Mitchard, E. T. A., Moran, E. F., Nelson, B. W., Nilus, R., Nogueira, E. M., Palace, M., Patiño, S., Peh, K. S.-H., Raventos, M. T., Reitsma, J. M., Saiz, G., Schrodt, F., Sonké, B., Taedoumg, H. E., Tan, S., White, L., Wöll, H., and Lloyd, J.: Height-diameter allometry of tropical forest trees, Biogeosciences, 8, 1081–1106, https://doi.org/10.5194/bg-8-1081-2011, 2011.
Fisher, R., McDowell, N., Purves, D., Moorcroft, P., Sitch, S., Cox, P., Huntingford, C., Meir, P., and Ian Woodward, F.: Assessing uncertainties in a second-generation dynamic vegetation model caused by ecological scale limitations, New Phytol., 187, 666–681, 2010.
Fortunel, C., Paine, C. E., Fine, P. V., Kraft, N. J., and Baraloto, C.: Environmental factors predict community functional composition in Amazonian forests, J. Ecol., 102, 145–155, 2014.
Franklin, O., Johansson, J., Dewar, R. C., Dieckmann, U., McMurtrie, R. E., Brännström, A., and Dybzinski, R.: Modeling carbon allocation in trees: a search for principles, Tree Physiol., 32, 648–666, 2012.
Friedlingstein, P., Joel, G., Field, C. B., and Fung, I. Y.: Toward an allocation scheme for global terrestrial carbon models, Global Change Biol., 5, 755–770, 1999.
Fyllas, N. M., Patiño, S., Baker, T. R., Bielefeld Nardoto, G., Martinelli, L. A., Quesada, C. A., Paiva, R., Schwarz, M., Horna, V., Mercado, L. M., Santos, A., Arroyo, L., Jiménez, E. M., Luizão, F. J., Neill, D. A., Silva, N., Prieto, A., Rudas, A., Silviera, M., Vieira, I. C. G., Lopez-Gonzalez, G., Malhi, Y., Phillips, O. L., and Lloyd, J.: Basin-wide variations in foliar properties of Amazonian forest: phylogeny, soils and climate, Biogeosciences, 6, 2677–2708, https://doi.org/10.5194/bg-6-2677-2009, 2009.
Fyllas, N. M., Quesada, C. A., and Lloyd, J.: Deriving plant functional types for Amazonian forests for use in vegetation dynamics models, Perspectives in Plant Ecology, Evolution System., 14, 97–110, 2012.
Galbraith, D., Levy, P. E., Sitch, S., Huntingford, C., Cox, P., Williams, M., and Meir, P.: Multiple mechanisms of Amazonian forest biomass losses in three dynamic global vegetation models under climate change, New Phytologist, 187, 647–665, 2010.
Giardina, C. P., Ryan, M. G., Binkley, D., and Fownes, J. H.: Primary production and carbon allocation in relation to nutrient supply in a tropical experimental forest, Global Change Biol., 9, 1438–1450, 2003.
Givnish, T. J.: Adaptation to sun and shade: a whole-plant perspective, Functional Plant Biol., 15, 63–92, 1988.
Gloor, M., Brienen, R. J. W., Galbraith, D., Feldpausch, T. R., Schöngart, J., Guyot, J.-L., Espinoza, J. C., Lloyd, J., and Phillips, O. L.: Intensification of the Amazon hydrological cycle over the last two decades, Geophys. Res. Lett., 1729–1733, 2013.
Goodman, R. C., Phillips, O. L., and Baker, T. R.: The importance of crown dimensions to improve tropical tree biomass estimates, Ecological Appl., 24, 680–698, https://doi.org/10.1890/13-0070.1, 2014.
Harris, P. P., Huntingford, C., Cox, P. M., Gash, J. H., and Malhi, Y.: Effect of soil moisture on canopy conductance of Amazonian rainforest, Agr. Forest Meteorol., 122, 215–227, 2004.
Hély, C., Bremond, L., Alleaume, S., Smith, B., Sykes, M. T., and Guiot, J.: Sensitivity of African biomes to changes in the precipitation regime, Global Ecol. Biogeogr., 15, 258–270, 2006.
Higgins, M. A., Ruokolainen, K., Tuomisto, H., Llerena, N., Cardenas, G., Phillips, O. L., Vásquez, R., and Räsänen, M.: Geological control of floristic composition in Amazonian forests, J. Biogeogr., 38, 2136–2149, 2011.
Higgins, S. I., Langan, L., and Scheiter, S.: Progress in DGVMs: a comment on "Impacts of trait variation through observed trait–climate relationships on performance of an Earth system model: a conceptual analysis" by Verheijen et al. (2013), Biogeosciences Discuss., 11, 4483–4492, 2014.
Huntingford, C., Harris, P. P., Gedney, N., Cox, P. M., Betts, R. A., Marengo, J. A., and Gash, J. H. C.: Using a GCM analogue model to investigate the potential for Amazonian forest dieback, Theor. Appl. Climatol., 78, 177–185, 2004.
Huntingford, C., Zelazowski, P., Galbraith, D., Mercado, L. M., Sitch, S., Fisher, R., Lomas, M., Walker, A. P., Jones, C. D., Booth, B. B. B., Malhi, Y., Hemming, D., Kay, G., Good, P., Lewis, S. L., Phillips, O. L., Atkin, O. K., Lloyd, J., Gloor, E., Zaragoza-Castells, J., Meir, P., Betts, R., Harris, P. P., Nobre, C., Marengo, J., and Cox, P. M.: Simulated resilience of tropical rainforests to CO2-induced climate change, Nat. Geosci., 6, 268–273, 2013.
Jones, D. L., Nguyen, C., and Finlay, R. D.: Carbon flow in the rhizosphere: carbon trading at the soil–root interface, Plant Soil, 321, 5–33, 2009.
Keddy, P. A.: Assembly and response rules: two goals for predictive community ecology, J. Vegetat. Sci., 3, 157–164, 1992.
Keeling, H. C., Baker, T. R., Martinez, R. V., Monteagudo, A., and Phillips, O. L.: Contrasting patterns of diameter and biomass increment across tree functional groups in Amazonian forests, Oecologia, 158, 521–534, 2008.
Keenan, T., Sabate, S., and Gracia, C.: Soil water stress and coupled photosynthesis–conductance models: Bridging the gap between conflicting reports on the relative roles of stomatal, mesophyll conductance and biochemical limitations to photosynthesis, Agr. Forest Meteorol., 150, 443–453, 2010.
King, D. A.: Allometry and life history of tropical trees, J. Tropical Ecol., 12, 25–44, 1996.
Köhler, P. and Huth, A.: The effects of tree species grouping in tropical rainforest modelling: Simulations with the individual-based model FORMIND, Ecol. Modell., 109, 301–321, 1998.
Lambers, H., Raven, J. A., Shaver, G. R., and Smith, S. E.: Plant nutrient-acquisition strategies change with soil age, Trends Ecol. Evolution, 23, 95–103, 2008.
Larjavaara, M. and Muller-Landau, H. C.: Still rethinking the value of high wood density, Am. J. Botany, 99, 165–168, 2012.
Lavorel, S., Díaz, S., Cornelissen, J. H. C., Garnier, E., Harrison, S. P., McIntyre, S., Pausas, J. G., Pérez-Harguindeguy, N., Roumet, C., and Urcelay, C.: Plant functional types: are we getting any closer to the Holy Grail?, in: Terrestrial ecosystems in a changing world, 149–164, Springer, 2007.
Lewis, S. L., Phillips, O. L., Baker, T. R., Lloyd, J., Malhi, Y., Almeida, S., Higuchi, N., Laurance, W. F., Neill, D. A., Silva, J. N. M., Terborgh, J., Lezama, A. T., Martinez, R. V., Brown, S., Chave, J., Kuebler, C., Vargas, P. N., and Vinceti, B.: Concerted changes in tropical forest structure and dynamics: evidence from 50 South American long-term plots, Phil. Trans. R. Soc. Lond. B, 359, 421–436, 2004.
Litton, C. M., Raich, J. W., and Ryan, M. G.: Carbon allocation in forest ecosystems, Global Change Biol., 13, 2089–2109, 2007.
Lloyd, J., Patiño, S., Paiva, R. Q., Nardoto, G. B., Quesada, C. A., Santos, A. J. B., Baker, T. R., Brand, W. A., Hilke, I., Gielmann, H., Raessler, M., Luizão, F. J., Martinelli, L. A., and Mercado, L. M.: Optimisation of photosynthetic carbon gain and within-canopy gradients of associated foliar traits for Amazon forest trees, Biogeosciences, 7, 1833–1859, https://doi.org/10.5194/bg-7-1833-2010, 2010.
Lopez-Gonzalez, G., Lewis, S. L., Burkitt, M., and Phillips, O. L.: ForestPlots. net: a web application and research tool to manage and analyse tropical forest plot data, J. Vegetation Sci., 22, 610–613, 2011.
Lopez-Gonzalez, G., Lewis, S. L., Burkitt, M., Baker, T. R., and Phillips, O. L.: available at: ForestPlots.net, Database.www.forestplots.net, 10 September 2013.
Malhi, Y.: The productivity, metabolism and carbon cycle of tropical forest vegetation, J. Ecol., 100, 65–75, 2012.
Malhi, Y. and Phillips, O.: Tropical forests & global atmospheric change, Cambridge Univ. Press, 2005.
Malhi, Y. and Wright, J.: Spatial patterns and recent trends in the climate of tropical rainforest regions, Philos. Trans. Roy. Soc. London Ser. B, 359, 311–329, 2004.
Malhi, Y., Phillips, O. l., Lloyd, J., Baker, T., Wright, J., Almeida, S., Arroyo, L., Frederiksen, T., Grace, J., Higuchi, N., Killeen, T., Laurance, W. f., Leaño, C., Lewis, S., Meir, P., Monteagudo, A., Neill, D., Núñez Vargas, P., Panfil, S. n., Patiño, S., Pitman, N., Quesada, C. a., Rudas-Ll., A., Salomão, R., Saleska, S., Silva, N., Silveira, M., Sombroek, W. g., Valencia, R., Vásquez Martínez, R., Vieira, I. C. G., and Vinceti, B.: An international network to monitor the structure, composition and dynamics of Amazonian forests (RAINFOR), J. Vegetation Sci., 13, 439–450, 2002.
Malhi, Y., Wood, D., Baker, T. R., Wright, J., Phillips, O. L., Cochrane, T., Meir, P., Chave, J., Almeida, S., Arroyo, L., Higuchi, N., Killeen, T. J., Laurance, S. G., Laurance, W. F., Lewis, S. L., Monteagudo, A., Neill, D. A., Vargas, P. N., Pitman, N. C. A., Quesada, C. A., Salomão, R., Silva, J. N. M., Lezama, A. T., Terborgh, J., Martínez, R. V., and Vinceti, B.: The regional variation of aboveground live biomass in old-growth Amazonian forests, Global Change Biol., 12, 1107–1138, https://doi.org/10.1111/j.1365-2486.2006.01120.x, 2006.
Malhi, Y., Aragão, L. E. O. C., Metcalfe, D. B., Paiva, R., Quesada, C. A., Almeida, S., Anderson, L., Brando, P., Chambers, J. Q., Da COSTA, A. C. L., Hutyra, L. R., Oliveira, P., Patiño, S., Pyle, E. H., Robertson, A. L., and Teixeira, L. M.: Comprehensive assessment of carbon productivity, allocation and storage in three Amazonian forests, Global Change Biol., 15, 1255–1274, 2009.
Malhi, Y., Doughty, C., and Galbraith, D.: The allocation of ecosystem net primary productivity in tropical forests, Philos. Trans. Roy. Soc. Ser. B, 366, 3225–3245, 2011.
Medlyn, B. E., Duursma, R. A., Eamus, D., Ellsworth, D. S., Prentice, I. C., Barton, C. V., Crous, K. Y., de Angelis, P., Freeman, M., and Wingate, L.: Reconciling the optimal and empirical approaches to modelling stomatal conductance, Global Change Biol., 17, 2134–2144, 2011.
Medlyn, B. E., Duursma, R. A., Eamus, D., Ellsworth, D. S., Colin Prentice, I., Barton, C. V., Crous, K. Y., Angelis, P., Freeman, M., and Wingate, L.: Corrigendum for: "Reconciling the optimal and empirical approaches to modelling stomatal conductance", Global Change Biol., 18, 3476–3476, 2012.
Meinzer, F. C., Campanello, P. I., Domec, J.-C., Gatti, M. G., Goldstein, G., Villalobos-Vega, R., and Woodruff, D. R.: Constraints on physiological function associated with branch architecture and wood density in tropical forest trees, Tree Physiol., 28, 1609–1617, 2008.
Meir, P. and Grace, J.: Scaling relationships for woody tissue respiration in two tropical rain forests, Plant, Cell Environ., 25, 963–973, 2002.
Meir, P., Grace, J., and Miranda, A. C.: Leaf respiration in two tropical rainforests: constraints on physiology by phosphorus, nitrogen and temperature, Functional Ecol., 15, 378–387, 2001.
Mercado, L. M., Patiño, S., Domingues, T. F., Fyllas, N. M., Weedon, G. P., Sitch, S., Quesada, C. A., Phillips, O. L., Aragão, L. E. O. C., Malhi, Y., Dolman, A. J., Restrepo-Coupe, N., Saleska, S. R., Baker, T. R., Almeida, S., Higuchi, N., and Lloyd, J.: Variations in Amazon forest productivity correlated with foliar nutrients and modelled rates of photosynthetic carbon supply, Phil. Trans. Roy. Soc. London Ser. B, 366, 3316–3329, 2011.
Moorcroft, P. R., Hurtt, G. C., and Pacala, S. W.: A method for scaling vegetation dynamics: the ecosystem demography model (ED), Ecol. Monogr., 71, 557–586, 2001.
Mori, S., Yamaji, K., Ishida, A., Prokushkin, S. G., Masyagina, O. V., Hagihara, A., Hoque, A. T. M. R., Suwa, R., Osawa, A., Nishizono, T., Ueda, T., Kinjo, M., Miyagi, T., Kajimoto, T., Koike, T., Matsuura, Y., Toma, T., Zyryanova, O. A., Abaimov, A. P., Awaya, Y., Araki, M. G., Kawasaki, T., Chiba, Y., and Umari, M.: Mixed-power scaling of whole-plant respiration from seedlings to giant trees, Proc. Natl. Aca. Sci., 107, 1447–1451, 2010.
Muller-Landau, H. C.: The tolerance–fecundity trade-off and the maintenance of diversity in seed size, Proc. Natl. Aca. Sci., 107, 4242–4247, 2010.
Nogueira, E. M., Fearnside, P. M., Nelson, B. W., Barbosa, R. I., and Keizer, E. W. H.: Estimates of forest biomass in the Brazilian Amazon: New allometric equations and adjustments to biomass from wood-volume inventories, Forest Ecol. Manage., 256, 1853–1867, 2008.
Patiño, S., Lloyd, J., Paiva, R., Baker, T. R., Quesada, C. A., Mercado, L. M., Schmerler, J., Schwarz, M., Santos, A. J. B., Aguilar, A., Czimczik, C. I., Gallo, J., Horna, V., Hoyos, E. J., Jimenez, E. M., Palomino, W., Peacock, J., Peña-Cruz, A., Sarmiento, C., Sota, A., Turriago, J. D., Villanueva, B., Vitzthum, P., Alvarez, E., Arroyo, L., Baraloto, C., Bonal, D., Chave, J., Costa, A. C. L., Herrera, R., Higuchi, N., Killeen, T., Leal, E., Luizão, F., Meir, P., Monteagudo, A., Neil, D., Núñez-Vargas, P., Peñuela, M. C., Pitman, N., Priante Filho, N., Prieto, A., Panfil, S. N., Rudas, A., Salomão, R., Silva, N., Silveira, M., Soares deAlmeida, S., Torres-Lezama, A., Vásquez-Mart\'inez, R., Vieira, I., Malhi, Y., and Phillips, O. L.: Branch xylem density variations across the Amazon Basin, Biogeosciences, 6, 545–568, https://doi.org/10.5194/bg-6-545-2009, 2009.
Patiño, S., Fyllas, N. M., Baker, T. R., Paiva, R., Quesada, C. A., Santos, A. J. B., Schwarz, M., ter Steege, H., Phillips, O. L., and Lloyd, J.: Coordination of physiological and structural traits in Amazon forest trees, Biogeosciences, 9, 775–801, https://doi.org/10.5194/bg-9-775-2012, 2012.
Pavlick, R., Drewry, D. T., Bohn, K., Reu, B., and Kleidon, A.: The Jena Diversity-Dynamic Global Vegetation Model (JeDi-DGVM): a diverse approach to representing terrestrial biogeography and biogeochemistry based on plant functional trade-offs, Biogeosciences, 10, 4137–4177, https://doi.org/10.5194/bg-10-4137-2013, 2013.
Phillips, O. L., Malhi, Y., Higuchi, N., Laurance, W. F., Núñez, P. V., Vásquez, R. M., Laurance, S. G., Ferreira, L. V., Stern, M., Brown, S., and Grace, J.: Changes in the Carbon Balance of Tropical Forests: Evidence from Long-Term Plots, Science, 282, 439–442, 1998.
Phillips, O. L., Baker, T. R., Arroyo, L., Higuchi, N., Killeen, T. J., Laurance, W. F., Lewis, S. L., Lloyd, J., Malhi, Y., Monteagudo, A., Neill, D. A., Vargas, P. N., Silva, J. N. M., Terborgh, J., Martínez, R. V., Alexiades, M., Almeida, S., Brown, S., Chave, J., Comiskey, J. A., Czimczik, C. I., Fiore, A. D., Erwin, T., Kuebler, C., Laurance, S. G., Nascimento, H. E. M., Olivier, J., Palacios, W., Patiño, S., Pitman, N. C. A., Quesada, C. A., Saldias, M., Lezama, A. T., and Vinceti, B.: Pattern and process in Amazon tree turnover, 1976–2001, Phil. Trans. R. Soc. Lond. B, 359, 381–407, 2004.
Poorter, L., Bongers, L., and Bongers, F.: Architecture of 54 moist-forest tree species: traits, trade-offs, and functional groups, Ecology, 87, 1289–1301, 2006.
Purves, D. W., Lichstein, J. W., and Pacala, S. W.: Crown plasticity and competition for canopy space: a new spatially implicit model parameterized for 250 North American tree species, PLoS One, 2, e870, 2007.
Pury, D. de and Farquhar, G. D.: Simple scaling of photosynthesis from leaves to canopies without the errors of big-leaf models, Plant, Cell Environ., 20, 537–557, 1997.
Quesada, C. A., Lloyd, J., Schwarz, M., Patiño, S., Baker, T. R., Czimczik, C., Fyllas, N. M., Martinelli, L., Nardoto, G. B., Schmerler, J., Santos, A. J. B., Hodnett, M. G., Herrera, R., Luizão, F. J., Arneth, A., Lloyd, G., Dezzeo, N., Hilke, I., Kuhlmann, I., Raessler, M., Brand, W. A., Geilmann, H., Moraes Filho, J. O., Carvalho, F. P., Araujo Filho, R. N., Chaves, J. E., Cruz Junior, O. F., Pimentel, T. P., and Paiva, R.: Variations in chemical and physical properties of Amazon forest soils in relation to their genesis, Biogeosciences, 7, 1515–1541, https://doi.org/10.5194/bg-7-1515-2010, 2010.
Quesada, C. A., Lloyd, J., Anderson, L. O., Fyllas, N. M., Schwarz, M., and Czimczik, C. I.: Soils of Amazonia with particular reference to the RAINFOR sites, Biogeosciences, 8, 1415–1440, https://doi.org/10.5194/bg-8-1415-2011, 2011.
Quesada, C. A., Phillips, O. L., Schwarz, M., Czimczik, C. I., Baker, T. R., Patiño, S., Fyllas, N. M., Hodnett, M. G., Herrera, R., Almeida, S., Alvarez Dávila, E., Arneth, A., Arroyo, L., Chao, K. J., Dezzeo, N., Erwin, T., di Fiore, A., Higuchi, N., Honorio Coronado, E., Jimenez, E. M., Killeen, T., Lezama, A. T., Lloyd, G., López-González, G., Luizão, F. J., Malhi, Y., Monteagudo, A., Neill, D. A., Núñez Vargas, P., Paiva, R., Peacock, J., Peñuela, M. C., Peña Cruz, A., Pitman, N., Priante Filho, N., Prieto, A., Ram\'irez, H., Rudas, A., Salomão, R., Santos, A. J. B., Schmerler, J., Silva, N., Silveira, M., Vásquez, R., Vieira, I., Terborgh, J., and Lloyd, J.: Basin-wide variations in Amazon forest structure and function are mediated by both soils and climate, Biogeosciences, 9, 2203–2246, https://doi.org/10.5194/bg-9-2203-2012, 2012.
Raaimakers, D., Boot, R. G. A., Dijkstra, P., and Pot, S.: Photosynthetic rates in relation to leaf phosphorus content in pioneer versus climax tropical rainforest trees, Oecologia, 102, 120–125, 1995.
R Core Team: R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, 2014.
Reich, P. B., Walters, M. B., Ellsworth, D. S., and Uhl, C.: Photosynthesis-nitrogen relations in Amazonian tree species, Oecologia, 97, 62–72, 1994.
Reich, P. B., Walters, M. B., and Ellsworth, D. S.: From tropics to tundra: global convergence in plant functioning, Pro. Natl. Aca. Sci., 94, 13730–13734, 1997.
Reich, P. B., Tjoelker, M. G., Pregitzer, K. S., Wright, I. J., Oleksyn, J., and Machado, J.-L.: Scaling of respiration to nitrogen in leaves, stems and roots of higher land plants, Ecol. Lett., 11, 793–801, 2008.
Reich, P. B., Oleksyn, J., and Wright, I. J.: Leaf phosphorus influences the photosynthesis–nitrogen relation: a cross-biome analysis of 314 species, Oecologia, 160, 207–212, 2009.
Ryan, M. G., Hubbard, R. M., Clark, D. A., and Sanford Jr, R. L.: Woody-tissue respiration for Simarouba amara and Minquartia guianensis, two tropical wet forest trees with different growth habits, Oecologia, 100, 213–220, 1994.
Scheiter, S. and Higgins, S. I.: Impacts of climate change on the vegetation of Africa: an adaptive dynamic vegetation modelling approach, Global Change Biol., 15, 2224–2246, 2009.
Scheiter, S., Langan, L., and Higgins, S. I.: Next-generation dynamic global vegetation models: learning from community ecology, New Phytol., 198, 957–969, 2013.
Sheffield, J., Goteti, G., and Wood, E. F.: Development of a 50-year high-resolution global dataset of meteorological forcings for land surface modeling, J. Climate, 19, 3088–3111, 2006.
Shukla, J., Nobre, C., and Sellers, P.: Amazon deforestation and climate change, Science, 247, 1322–1325, 1990.
Sitch, S., Smith, B., Prentice, I. C., Arneth, A., Bondeau, A., Cramer, W., Kaplan, J. O., Levis, S., Lucht, W., Sykes, M. T., Thonicke, K., and Venevsky, S.: Evaluation of ecosystem dynamics, plant geography and terrestrial carbon cycling in the LPJ dynamic global vegetation model, Global Change Biol., 9., 161–185, 2003.
Sombroek, W.: Amazon landforms and soils in relation to biological diversity, Acta Amazonica, 30, 81–100, 2000.
Sombroek, W.: Spatial and temporal patterns of Amazon rainfall: consequences for the planning of agricultural occupation and the protection of primary forests, AMBIO: A Journal of the Human Environment, 30, 388–396, 2001.
Spitters, C. J. T.: Separating the diffuse and direct component of global radiation and its implications for modeling canopy photosynthesis Part II. Calculation of canopy photosynthesis, Agr. Forest Meteorol., 38, 231–242, 1986.
Spracklen, D. V., Arnold, S. R., and Taylor, C. M.: Observations of increased tropical rainfall preceded by air passage over forests, Nature, 489, 282–285, 2012.
Sultan, S. E.: Phenotypic plasticity for plant development, function and life history, Trends Plant Sci., 5, 537–542, 2000.
Taylor, M. S. and Thompson, J. R.: A data based algorithm for the generation of random vectors, Comput. Stat. Data Analysis, 4, 93–101, 1986.
Ter Steege, H., Pitman, N. C. A., Phillips, O. L., Chave, J., Sabatier, D., Duque, A., Molino, J.-F., Prévost, M.-F., Spichiger, R., Castellanos, H., von Hildebrand, P., and Vásquez, R.: Continental-scale patterns of canopy tree composition and function across Amazonia, Nature, 443, 444–447, 2006.
Thompson, J. R.: Empirical Model Building, John Wiley & Sons, 1989.
Tjoelker, M. G., Oleksyn, J., and Reich, P. B.: Modelling respiration of vegetation: evidence for a general temperature-dependent Q10, Global Change Biol., 7, 223–230, 2001.
Townsend, A. R., Asner, G. P., and Cleveland, C. C.: The biogeochemical heterogeneity of tropical forests, Trends Ecol. Evol., 23, 424–431, 2008.
Valentini, R., Matteucci, G., Dolman, A. J., Schulze, E.-D., Rebmann, C., Moors, E. J., Granier, A., Gross, P., Jensen, N. O., Pilegaard, K., Lindroth, A., Grelle, A., Bernhofer, C., Grünwald, T., Aubinet, M., Ceulemans, R., Kowalski, A. S., Vesala, T., Rannik, Ü., Berbigier, P., Loustau, D., Gu\dhmundsson, J., Thorgeirsson, H., Ibrom, A., Morgenstern, K., Clement, R., Moncrieff, J., Montagnani, L., Minerbi, S., and Jarvis, P. G.: Respiration as the main determinant of carbon balance in European forests, Nature, 404, 861–865, 2000.
Verheijen, L. M., Brovkin, V., Aerts, R., Bönisch, G., Cornelissen, J. H. C., Kattge, J., Reich, P. B., Wright, I. J., and van Bodegom, P. M.: Impacts of trait variation through observed trait–climate relationships on performance of an Earth system model: a conceptual analysis, Biogeosciences, 10, 5497–5515, 2013.
Visual Numerics Fortran Numerical Stat Library, available at: http://www.roguewave.com/portals/0/products/imsl-numerical-libraries/fortran-library/docs/7.0/stat/stat.htm (last access: 15 January 2014), 2014.
Vitousek, P. M. and Farrington, H.: Nutrient limitation and soil development: experimental test of a biogeochemical theory, Biogeochemistry, 37, 63–75, 1997.
Walker, T. W. and Syers, J. K.: The fate of phosphorus during pedogenesis, Geoderma, 15, 1–19, 1976.
Wang, Y. P., Lu, X. J., Wright, I. J., Dai, Y. J., Rayner, P. J., and Reich, P. B.: Correlations among leaf traits provide a significant constraint on the estimate of global gross primary production, Geophys. Res. Lett., 39, https://doi.org/10.1029/2012GL053461, 2012.
White, A., Cannell, M. G., and Friend, A. D.: Climate change impacts on ecosystems and the terrestrial carbon sink: a new assessment, Global Environ. Change, 9, S21–S30, 1999.
Wright, I. J., Reich, P. B., Westoby, M., Ackerly, D. D., Baruch, Z., Bongers, F., Cavender-Bares, J., Chapin, T., Cornelissen, J. H. C., Diemer, M., Flexas, J., Garnier, E., Groom, P. K., Gulias, J., Hikosaka, K., Lamont, B. B., Lee, T., Lee, W., Lusk, C., Midgley, J. J., Navas, M.-L., Niinemets, Ü., Oleksyn, J., Osada, N., Poorter, H., Poot, P., Prior, L., Pyankov, V. I., Roumet, C., Thomas, S. C., Tjoelker, M. G., Veneklaas, E. J., and Villar, R.: The worldwide leaf economics spectrum, Nature, 428, 821–827, 2004.
York, D., Evensen, N. M., Martínez, M. L., and Delgado, J. D. B.: Unified equations for the slope, intercept, and standard errors of the best straight line, Am. J. Physics, 72, 367, https://doi.org/10.1119/1.16324862004, 2004.
Zhang, Y., Xu, M., Chen, H., and Adams, J.: Global pattern of NPP to GPP ratio derived from MODIS data: effects of ecosystem type, geographical location and climate, Global Ecol. Biogeogr., 18, 280–290, 2009.
