Articles | Volume 17, issue 10
https://doi.org/10.5194/gmd-17-4229-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-17-4229-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
24 May 2024
Model description paper |
| 24 May 2024
| 24 May 2024
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
David Sandoval
CORRESPONDING AUTHOR
Georgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Ascot, UK
Iain Colin Prentice
Georgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Ascot, UK
Department of Biological Sciences, Macquarie University, North Ryde, NSW, Australia
Department of Earth System Science, Institute for Global Change Studies, Tsinghua University, Beijing, China
Rodolfo L. B. Nóbrega
School of Geographical Sciences, University of Bristol, Bristol, UK
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Benjamin D. Stocker, Han Wang, Nicholas G. Smith, Sandy P. Harrison, Trevor F. Keenan, David Sandoval, Tyler Davis, and I. Colin Prentice
Geosci. Model Dev., 13, 1545–1581, https://doi.org/10.5194/gmd-13-1545-2020, https://doi.org/10.5194/gmd-13-1545-2020, 2020
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Estimating terrestrial photosynthesis relies on satellite data of vegetation cover and models simulating the efficiency by which light absorbed by vegetation is used for CO2 assimilation. This paper presents the P-model, a light use efficiency model derived from a carbon–water optimality principle, and evaluates its predictions of ecosystem-level photosynthesis against globally distributed observations. The model is implemented and openly accessible as an R package (rpmodel).
Amin Hassan, Iain Colin Prentice, and Xu Liang
EGUsphere, https://doi.org/10.5194/egusphere-2025-622, https://doi.org/10.5194/egusphere-2025-622, 2025
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Evapotranspiration (ET) is the evaporation occurring from plants, soil, and water bodies. Separating these components is challenging due to the lack of measurements and uncertainty of existing ET partitioning methods. We propose a method that utilizes hydrological measurements such as streamflow to determine the ratio of transpiration (evaporation from plants) to evapotranspiration. The results provide a better understanding of plant-water interactions and new perspective on a challenging topic.
Jierong Zhao, Boya Zhou, Sandy P. Harrison, and I. Colin Prentice
EGUsphere, https://doi.org/10.5194/egusphere-2024-3897, https://doi.org/10.5194/egusphere-2024-3897, 2025
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We used eco-evolutionary optimality modelling to examine how climate and CO2 impacted vegetation at the Last Glacial Maximum (LGM, 21,000 years ago) and the mid-Holocene (MH, 6,000 years ago). Low CO2 at the LGM was as important as climate in reducing tree cover and productivity, and increasing C4 plant abundance. Climate had positive effects on MH vegetation, but the low CO2 was a constraint on plant growth. These results show it is important to consider changing CO2 to model ecosystem changes.
Katie R. Blackford, Matthew Kasoar, Chantelle Burton, Eleanor Burke, Iain Colin Prentice, and Apostolos Voulgarakis
Geosci. Model Dev., 17, 3063–3079, https://doi.org/10.5194/gmd-17-3063-2024, https://doi.org/10.5194/gmd-17-3063-2024, 2024
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Peatlands are globally important stores of carbon which are being increasingly threatened by wildfires with knock-on effects on the climate system. Here we introduce a novel peat fire parameterization in the northern high latitudes to the INFERNO global fire model. Representing peat fires increases annual burnt area across the high latitudes, alongside improvements in how we capture year-to-year variation in burning and emissions.
Mengmeng Liu, Iain Colin Prentice, and Sandy P. Harrison
Clim. Past Discuss., https://doi.org/10.5194/cp-2024-12, https://doi.org/10.5194/cp-2024-12, 2024
Preprint under review for CP
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Dansgaard-Oeschger events were large and rapid warming events that occurred multiple times during the last ice age. We show that changes in the northern extratropics and the southern extratropics were anti-phased, with warming over most of the north and cooling in the south. The reconstructions do not provide evidence for a change in seasonality in temperature. However, they do indicate that warming was generally accompanied by wetter conditions and cooling by drier conditions.
Huiying Xu, Han Wang, Iain Colin Prentice, and Sandy P. Harrison
Biogeosciences, 20, 4511–4525, https://doi.org/10.5194/bg-20-4511-2023, https://doi.org/10.5194/bg-20-4511-2023, 2023
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Leaf carbon (C) and nitrogen (N) are crucial elements in leaf construction and physiological processes. This study reconciled the roles of phylogeny, species identity, and climate in stoichiometric traits at individual and community levels. The variations in community-level leaf N and C : N ratio were captured by optimality-based models using climate data. Our results provide an approach to improve the representation of leaf stoichiometry in vegetation models to better couple N with C cycling.
Esmeralda Cruz-Silva, Sandy P. Harrison, I. Colin Prentice, Elena Marinova, Patrick J. Bartlein, Hans Renssen, and Yurui Zhang
Clim. Past, 19, 2093–2108, https://doi.org/10.5194/cp-19-2093-2023, https://doi.org/10.5194/cp-19-2093-2023, 2023
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We examined 71 pollen records (12.3 ka to present) in the eastern Mediterranean, reconstructing climate changes. Over 9000 years, winters gradually warmed due to orbital factors. Summer temperatures peaked at 4.5–5 ka, likely declining because of ice sheets. Moisture increased post-11 kyr, remaining high from 10–6 kyr before a slow decrease. Climate models face challenges in replicating moisture transport.
Olivia Haas, Iain Colin Prentice, and Sandy P. Harrison
Biogeosciences, 20, 3981–3995, https://doi.org/10.5194/bg-20-3981-2023, https://doi.org/10.5194/bg-20-3981-2023, 2023
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We quantify the impact of CO2 and climate on global patterns of burnt area, fire size, and intensity under Last Glacial Maximum (LGM) conditions using three climate scenarios. Climate change alone did not produce the observed LGM reduction in burnt area, but low CO2 did through reducing vegetation productivity. Fire intensity was sensitive to CO2 but strongly affected by changes in atmospheric dryness. Low CO2 caused smaller fires; climate had the opposite effect except in the driest scenario.
Giulia Mengoli, Sandy P. Harrison, and I. Colin Prentice
EGUsphere, https://doi.org/10.5194/egusphere-2023-1261, https://doi.org/10.5194/egusphere-2023-1261, 2023
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Soil water availability affects plant carbon uptake by reducing leaf area and/or by closing stomata, which reduces its efficiency. We present a new formulation of how climatic dryness reduces both maximum carbon uptake and the soil-moisture threshold below which it declines further. This formulation illustrates how plants adapt their water conservation strategy to thrive in dry climates, and is step towards a better representation of soil-moisture effects in climate models.
Mengmeng Liu, Yicheng Shen, Penelope González-Sampériz, Graciela Gil-Romera, Cajo J. F. ter Braak, Iain Colin Prentice, and Sandy P. Harrison
Clim. Past, 19, 803–834, https://doi.org/10.5194/cp-19-803-2023, https://doi.org/10.5194/cp-19-803-2023, 2023
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We reconstructed the Holocene climates in the Iberian Peninsula using a large pollen data set and found that the west–east moisture gradient was much flatter than today. We also found that the winter was much colder, which can be expected from the low winter insolation during the Holocene. However, summer temperature did not follow the trend of summer insolation, instead, it was strongly correlated with moisture.
Jing M. Chen, Rong Wang, Yihong Liu, Liming He, Holly Croft, Xiangzhong Luo, Han Wang, Nicholas G. Smith, Trevor F. Keenan, I. Colin Prentice, Yongguang Zhang, Weimin Ju, and Ning Dong
Earth Syst. Sci. Data, 14, 4077–4093, https://doi.org/10.5194/essd-14-4077-2022, https://doi.org/10.5194/essd-14-4077-2022, 2022
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Green leaves contain chlorophyll pigments that harvest light for photosynthesis and also emit chlorophyll fluorescence as a byproduct. Both chlorophyll pigments and fluorescence can be measured by Earth-orbiting satellite sensors. Here we demonstrate that leaf photosynthetic capacity can be reliably derived globally using these measurements. This new satellite-based information overcomes a bottleneck in global ecological research where such spatially explicit information is currently lacking.
Yicheng Shen, Luke Sweeney, Mengmeng Liu, Jose Antonio Lopez Saez, Sebastián Pérez-Díaz, Reyes Luelmo-Lautenschlaeger, Graciela Gil-Romera, Dana Hoefer, Gonzalo Jiménez-Moreno, Heike Schneider, I. Colin Prentice, and Sandy P. Harrison
Clim. Past, 18, 1189–1201, https://doi.org/10.5194/cp-18-1189-2022, https://doi.org/10.5194/cp-18-1189-2022, 2022
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We present a method to reconstruct burnt area using a relationship between pollen and charcoal abundances and the calibration of charcoal abundance using modern observations of burnt area. We use this method to reconstruct changes in burnt area over the past 12 000 years from sites in Iberia. We show that regional changes in burnt area reflect known changes in climate, with a high burnt area during warming intervals and low burnt area when the climate was cooler and/or wetter than today.
Alexander Kuhn-Régnier, Apostolos Voulgarakis, Peer Nowack, Matthias Forkel, I. Colin Prentice, and Sandy P. Harrison
Biogeosciences, 18, 3861–3879, https://doi.org/10.5194/bg-18-3861-2021, https://doi.org/10.5194/bg-18-3861-2021, 2021
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Along with current climate, vegetation, and human influences, long-term accumulation of biomass affects fires. Here, we find that including the influence of antecedent vegetation and moisture improves our ability to predict global burnt area. Additionally, the length of the preceding period which needs to be considered for accurate predictions varies across regions.
Anna B. Harper, Karina E. Williams, Patrick C. McGuire, Maria Carolina Duran Rojas, Debbie Hemming, Anne Verhoef, Chris Huntingford, Lucy Rowland, Toby Marthews, Cleiton Breder Eller, Camilla Mathison, Rodolfo L. B. Nobrega, Nicola Gedney, Pier Luigi Vidale, Fred Otu-Larbi, Divya Pandey, Sebastien Garrigues, Azin Wright, Darren Slevin, Martin G. De Kauwe, Eleanor Blyth, Jonas Ardö, Andrew Black, Damien Bonal, Nina Buchmann, Benoit Burban, Kathrin Fuchs, Agnès de Grandcourt, Ivan Mammarella, Lutz Merbold, Leonardo Montagnani, Yann Nouvellon, Natalia Restrepo-Coupe, and Georg Wohlfahrt
Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, https://doi.org/10.5194/gmd-14-3269-2021, 2021
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We evaluated 10 representations of soil moisture stress in the JULES land surface model against site observations of GPP and latent heat flux. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES. In addition, using soil matric potential presents the opportunity to include parameters specific to plant functional type to further improve modeled fluxes.
Stijn Hantson, Douglas I. Kelley, Almut Arneth, Sandy P. Harrison, Sally Archibald, Dominique Bachelet, Matthew Forrest, Thomas Hickler, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Lars Nieradzik, Sam S. Rabin, I. Colin Prentice, Tim Sheehan, Stephen Sitch, Lina Teckentrup, Apostolos Voulgarakis, and Chao Yue
Geosci. Model Dev., 13, 3299–3318, https://doi.org/10.5194/gmd-13-3299-2020, https://doi.org/10.5194/gmd-13-3299-2020, 2020
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Global fire–vegetation models are widely used, but there has been limited evaluation of how well they represent various aspects of fire regimes. Here we perform a systematic evaluation of simulations made by nine FireMIP models in order to quantify their ability to reproduce a range of fire and vegetation benchmarks. While some FireMIP models are better at representing certain aspects of the fire regime, no model clearly outperforms all other models across the full range of variables assessed.
Fortunat Joos, Renato Spahni, Benjamin D. Stocker, Sebastian Lienert, Jurek Müller, Hubertus Fischer, Jochen Schmitt, I. Colin Prentice, Bette Otto-Bliesner, and Zhengyu Liu
Biogeosciences, 17, 3511–3543, https://doi.org/10.5194/bg-17-3511-2020, https://doi.org/10.5194/bg-17-3511-2020, 2020
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Results of the first globally resolved simulations of terrestrial carbon and nitrogen (N) cycling and N2O emissions over the past 21 000 years are compared with reconstructed N2O emissions. Modelled and reconstructed emissions increased strongly during past abrupt warming events. This evidence appears consistent with a dynamic response of biological N fixation to increasing N demand by ecosystems, thereby reducing N limitation of plant productivity and supporting a land sink for atmospheric CO2.
Sean F. Cleator, Sandy P. Harrison, Nancy K. Nichols, I. Colin Prentice, and Ian Roulstone
Clim. Past, 16, 699–712, https://doi.org/10.5194/cp-16-699-2020, https://doi.org/10.5194/cp-16-699-2020, 2020
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We present geographically explicit reconstructions of seasonal temperature and annual moisture variables at the Last Glacial Maximum (LGM), 21 000 years ago. The reconstructions use existing site-based estimates of climate, interpolated in space and time in a physically consistent way using climate model simulations. The reconstructions give a much better picture of the LGM climate and will provide a robust evaluation of how well state-of-the-art climate models simulate large climate changes.
Benjamin D. Stocker, Han Wang, Nicholas G. Smith, Sandy P. Harrison, Trevor F. Keenan, David Sandoval, Tyler Davis, and I. Colin Prentice
Geosci. Model Dev., 13, 1545–1581, https://doi.org/10.5194/gmd-13-1545-2020, https://doi.org/10.5194/gmd-13-1545-2020, 2020
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Estimating terrestrial photosynthesis relies on satellite data of vegetation cover and models simulating the efficiency by which light absorbed by vegetation is used for CO2 assimilation. This paper presents the P-model, a light use efficiency model derived from a carbon–water optimality principle, and evaluates its predictions of ecosystem-level photosynthesis against globally distributed observations. The model is implemented and openly accessible as an R package (rpmodel).
Guangqi Li, Sandy P. Harrison, and I. Colin Prentice
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-63, https://doi.org/10.5194/bg-2019-63, 2019
Publication in BG not foreseen
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Current methods of removing age effect from tree-ring are influenced by sampling biases – older trees are more abundantly sampled for recent decades, when the strongest environmental change happens. New technique of extracting environment-driven signals from tree ring is specifically designed to overcome this bias, drawing on theoretical tree growth. It removes sampling-bias effectively and shows consistent relationships between growth and climates through time and across two conifer species.
Dongyang Wei, Penélope González-Sampériz, Graciela Gil-Romera, Sandy P. Harrison, and I. Colin Prentice
Clim. Past Discuss., https://doi.org/10.5194/cp-2019-16, https://doi.org/10.5194/cp-2019-16, 2019
Revised manuscript not accepted
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El Cañizar de Villarquemado provides a pollen record from semi-arid Spain since before the last interglacial. We use modern pollen–climate relationships to reconstruct changes in seasonal temperature and moisture, accounting for CO2 effects on plants, and show coherent climate changes on glacial–interglacial and orbital timescales. The low glacial CO2 means moisture changes are less extreme than suggested by the vegetation shifts, and driven by evapotranspiration rather than rainfall changes.
Henrique Fürstenau Togashi, Iain Colin Prentice, Owen K. Atkin, Craig Macfarlane, Suzanne M. Prober, Keith J. Bloomfield, and Bradley John Evans
Biogeosciences, 15, 3461–3474, https://doi.org/10.5194/bg-15-3461-2018, https://doi.org/10.5194/bg-15-3461-2018, 2018
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Ecosystem models commonly assume that photosynthetic traits, such as carboxylation capacity measured at a standard temperature, are constant in time and therefore do not acclimate. Optimality hypotheses suggest this assumption may be incorrect. We investigated acclimation by carrying out measurements on woody species during distinct seasons in Western Australia. Our study shows evidence that carboxylation capacity should acclimate so that it increases somewhat with growth temperature.
Sandy P. Harrison, Patrick J. Bartlein, Victor Brovkin, Sander Houweling, Silvia Kloster, and I. Colin Prentice
Earth Syst. Dynam., 9, 663–677, https://doi.org/10.5194/esd-9-663-2018, https://doi.org/10.5194/esd-9-663-2018, 2018
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Temperature affects fire occurrence and severity. Warming will increase fire-related carbon emissions and thus atmospheric CO2. The size of this feedback is not known. We use charcoal records to estimate pre-industrial fire emissions and a simple land–biosphere model to quantify the feedback. We infer a feedback strength of 5.6 3.2 ppm CO2 per degree of warming and a gain of 0.09 ± 0.05 for a climate sensitivity of 2.8 K. Thus, fire feedback is a large part of the climate–carbon-cycle feedback.
Rodolfo Luiz Bezerra Nóbrega, Gabriele Lamparter, Harold Hughes, Alphonce Chenjerayi Guzha, Ricardo Santos Silva Amorim, and Gerhard Gerold
Proc. IAHS, 377, 3–7, https://doi.org/10.5194/piahs-377-3-2018, https://doi.org/10.5194/piahs-377-3-2018, 2018
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We analyzed the impacts of deforestation on water quantity and quality in the Tapajós River, one of the main tributaries of the Amazon River. To that end, we used data from 2 years of fieldwork as well other state-of-the-art techniques in small and large areas of this study area. We found changes in water quality and quantity across small and large portions of this area. Our results show that some impacts of deforestation usually observed in small streams are also affecting the major river.
Daniel S. Goll, Alexander J. Winkler, Thomas Raddatz, Ning Dong, Ian Colin Prentice, Philippe Ciais, and Victor Brovkin
Geosci. Model Dev., 10, 2009–2030, https://doi.org/10.5194/gmd-10-2009-2017, https://doi.org/10.5194/gmd-10-2009-2017, 2017
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The response of soil organic carbon decomposition to warming and the interactions between nitrogen and carbon cycling affect the feedbacks between the land carbon cycle and the climate. In the model JSBACH carbon–nitrogen interactions have only a small effect on the feedbacks, whereas modifications of soil organic carbon decomposition have a large effect. The carbon cycle in the improved model is more resilient to climatic changes than in previous version of the model.
Tyler W. Davis, I. Colin Prentice, Benjamin D. Stocker, Rebecca T. Thomas, Rhys J. Whitley, Han Wang, Bradley J. Evans, Angela V. Gallego-Sala, Martin T. Sykes, and Wolfgang Cramer
Geosci. Model Dev., 10, 689–708, https://doi.org/10.5194/gmd-10-689-2017, https://doi.org/10.5194/gmd-10-689-2017, 2017
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This research presents a comprehensive description for calculating necessary, but sparsely observed, factors related to Earth's surface energy and water budgets relevant in, but not limited to, the study of ecosystems. We present the equations, including their derivations and assumptions, as well as example indicators relevant to plant-available moisture. The robustness of these relatively simple equations provides a tool to be used across broad fields of scientific research.
Ning Dong, Iain Colin Prentice, Bradley J. Evans, Stefan Caddy-Retalic, Andrew J. Lowe, and Ian J. Wright
Biogeosciences, 14, 481–495, https://doi.org/10.5194/bg-14-481-2017, https://doi.org/10.5194/bg-14-481-2017, 2017
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The nitrogen content of leaves is a key quantity for understanding ecosystem function. We analysed variations in nitrogen per unit leaf area among species at sites along a transect across Australia including many climates and ecosystem types. The data could be explained by the idea that leaf nitrogen comprises two parts, one proportional to leaf mass, the other (metabolic) part proportional to light intensity and declining with CO2 drawdown and temperature, as optimal allocation theory predicts.
Corinne Le Quéré, Erik T. Buitenhuis, Róisín Moriarty, Séverine Alvain, Olivier Aumont, Laurent Bopp, Sophie Chollet, Clare Enright, Daniel J. Franklin, Richard J. Geider, Sandy P. Harrison, Andrew G. Hirst, Stuart Larsen, Louis Legendre, Trevor Platt, I. Colin Prentice, Richard B. Rivkin, Sévrine Sailley, Shubha Sathyendranath, Nick Stephens, Meike Vogt, and Sergio M. Vallina
Biogeosciences, 13, 4111–4133, https://doi.org/10.5194/bg-13-4111-2016, https://doi.org/10.5194/bg-13-4111-2016, 2016
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We present a global biogeochemical model which incorporates ecosystem dynamics based on the representation of ten plankton functional types, and use the model to assess the relative roles of iron vs. grazing in determining phytoplankton biomass in the Southern Ocean. Our results suggest that observed low phytoplankton biomass in the Southern Ocean during summer is primarily explained by the dynamics of the Southern Ocean zooplankton community, despite iron limitation of phytoplankton growth.
Stijn Hantson, Almut Arneth, Sandy P. Harrison, Douglas I. Kelley, I. Colin Prentice, Sam S. Rabin, Sally Archibald, Florent Mouillot, Steve R. Arnold, Paulo Artaxo, Dominique Bachelet, Philippe Ciais, Matthew Forrest, Pierre Friedlingstein, Thomas Hickler, Jed O. Kaplan, Silvia Kloster, Wolfgang Knorr, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Andrea Meyn, Stephen Sitch, Allan Spessa, Guido R. van der Werf, Apostolos Voulgarakis, and Chao Yue
Biogeosciences, 13, 3359–3375, https://doi.org/10.5194/bg-13-3359-2016, https://doi.org/10.5194/bg-13-3359-2016, 2016
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Our ability to predict the magnitude and geographic pattern of past and future fire impacts rests on our ability to model fire regimes. A large variety of models exist, and it is unclear which type of model or degree of complexity is required to model fire adequately at regional to global scales. In this paper we summarize the current state of the art in fire-regime modelling and model evaluation, and outline what lessons may be learned from the Fire Model Intercomparison Project – FireMIP.
A. V. Gallego-Sala, D. J. Charman, S. P. Harrison, G. Li, and I. C. Prentice
Clim. Past, 12, 129–136, https://doi.org/10.5194/cp-12-129-2016, https://doi.org/10.5194/cp-12-129-2016, 2016
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It has become a well-established paradigm that blanket bog landscapes in the British Isles are a result of forest clearance by early human populations. We provide a novel test of this hypothesis using results from bioclimatic modelling driven by cimate reconstructions compared with a database of peat initiation dates. Both results show similar patterns of peat initiation over time and space. This suggests that climate was the main driver of blanket bog inception and not human disturbance.
B. A. A. Hoogakker, R. S. Smith, J. S. Singarayer, R. Marchant, I. C. Prentice, J. R. M. Allen, R. S. Anderson, S. A. Bhagwat, H. Behling, O. Borisova, M. Bush, A. Correa-Metrio, A. de Vernal, J. M. Finch, B. Fréchette, S. Lozano-Garcia, W. D. Gosling, W. Granoszewski, E. C. Grimm, E. Grüger, J. Hanselman, S. P. Harrison, T. R. Hill, B. Huntley, G. Jiménez-Moreno, P. Kershaw, M.-P. Ledru, D. Magri, M. McKenzie, U. Müller, T. Nakagawa, E. Novenko, D. Penny, L. Sadori, L. Scott, J. Stevenson, P. J. Valdes, M. Vandergoes, A. Velichko, C. Whitlock, and C. Tzedakis
Clim. Past, 12, 51–73, https://doi.org/10.5194/cp-12-51-2016, https://doi.org/10.5194/cp-12-51-2016, 2016
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In this paper we use two climate models to test how Earth’s vegetation responded to changes in climate over the last 120 000 years, looking at warm interglacial climates like today, cold ice-age glacial climates, and intermediate climates. The models agree well with observations from pollen, showing smaller forested areas and larger desert areas during cold periods. Forests store most terrestrial carbon; the terrestrial carbon lost during cold climates was most likely relocated to the oceans.
M. G. De Kauwe, S.-X. Zhou, B. E. Medlyn, A. J. Pitman, Y.-P. Wang, R. A. Duursma, and I. C. Prentice
Biogeosciences, 12, 7503–7518, https://doi.org/10.5194/bg-12-7503-2015, https://doi.org/10.5194/bg-12-7503-2015, 2015
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Future climate change has the potential to increase drought in many regions of the globe. Recent data syntheses show that drought sensitivity varies considerably among plants from different climate zones, but state-of-the-art models currently assume the same drought sensitivity for all vegetation. Our results indicate that models will over-estimate drought impacts in drier climates unless different sensitivity of vegetation to drought is taken into account.
R. L. B. Nobrega, A. C. Guzha, G. N. Torres, K. Kovacs, G. Lamparter, R. S. S. Amorim, E. Couto, and G. Gerold
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-12-9915-2015, https://doi.org/10.5194/hessd-12-9915-2015, 2015
Manuscript not accepted for further review
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This study examines the rainfall-runoff processes in micro-catchments in which a main source of variability is the contrasting land use. The study area is located in the Amazonian agricultural frontier, in the Brazilian Cerrado biome, and it aims to fill a gap in the literature concerning the Brazilian Cerrado, and to understand how streamflow and catchment hydrologic regimes are conditioned by microclimate, precipitation pattern, land cover and soil properties, among other catchment properties.
T.-T. Meng, H. Wang, S. P. Harrison, I. C. Prentice, J. Ni, and G. Wang
Biogeosciences, 12, 5339–5352, https://doi.org/10.5194/bg-12-5339-2015, https://doi.org/10.5194/bg-12-5339-2015, 2015
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By analysing the quantitative leaf-traits along extensive temperature and moisture gradients with generalized linear models, we found that metabolism-related traits are universally acclimated to environmental conditions, rather than being fixed within plant functional types. The results strongly support a move towards Dynamic Global Vegetation Models in which continuous, adaptive trait variation provides the fundamental mechanism for changes in ecosystem properties along environmental gradients.
I. C. Prentice, X. Liang, B. E. Medlyn, and Y.-P. Wang
Atmos. Chem. Phys., 15, 5987–6005, https://doi.org/10.5194/acp-15-5987-2015, https://doi.org/10.5194/acp-15-5987-2015, 2015
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Land surface models (LSMs) describe how carbon and water fluxes react to environmental change. They are key component of climate models, yet they differ enormously. Many perform poorly, despite having many parameters. We outline a development strategy emphasizing robustness, reliability and realism, none of which is guaranteed by complexity alone. We propose multiple constraints, benchmarking and data assimilation, and representing unresolved processes stochastically, as tools in this endeavour.
G. Li, S. P. Harrison, and I. C. Prentice
Biogeosciences Discuss., https://doi.org/10.5194/bgd-12-4769-2015, https://doi.org/10.5194/bgd-12-4769-2015, 2015
Revised manuscript has not been submitted
G. Li, S. P. Harrison, I. C. Prentice, and D. Falster
Biogeosciences, 11, 6711–6724, https://doi.org/10.5194/bg-11-6711-2014, https://doi.org/10.5194/bg-11-6711-2014, 2014
M. Martin Calvo, I. C. Prentice, and S. P. Harrison
Biogeosciences, 11, 6017–6027, https://doi.org/10.5194/bg-11-6017-2014, https://doi.org/10.5194/bg-11-6017-2014, 2014
H. Wang, I. C. Prentice, and T. W. Davis
Biogeosciences, 11, 5987–6001, https://doi.org/10.5194/bg-11-5987-2014, https://doi.org/10.5194/bg-11-5987-2014, 2014
D. I. Kelley, S. P. Harrison, and I. C. Prentice
Geosci. Model Dev., 7, 2411–2433, https://doi.org/10.5194/gmd-7-2411-2014, https://doi.org/10.5194/gmd-7-2411-2014, 2014
I. Bistinas, S. P. Harrison, I. C. Prentice, and J. M. C. Pereira
Biogeosciences, 11, 5087–5101, https://doi.org/10.5194/bg-11-5087-2014, https://doi.org/10.5194/bg-11-5087-2014, 2014
P. N. Foster, I. C. Prentice, C. Morfopoulos, M. Siddall, and M. van Weele
Biogeosciences, 11, 3437–3451, https://doi.org/10.5194/bg-11-3437-2014, https://doi.org/10.5194/bg-11-3437-2014, 2014
A. M. Foley, D. Dalmonech, A. D. Friend, F. Aires, A. T. Archibald, P. Bartlein, L. Bopp, J. Chappellaz, P. Cox, N. R. Edwards, G. Feulner, P. Friedlingstein, S. P. Harrison, P. O. Hopcroft, C. D. Jones, J. Kolassa, J. G. Levine, I. C. Prentice, J. Pyle, N. Vázquez Riveiros, E. W. Wolff, and S. Zaehle
Biogeosciences, 10, 8305–8328, https://doi.org/10.5194/bg-10-8305-2013, https://doi.org/10.5194/bg-10-8305-2013, 2013
A. M. Ukkola and I. C. Prentice
Hydrol. Earth Syst. Sci., 17, 4177–4187, https://doi.org/10.5194/hess-17-4177-2013, https://doi.org/10.5194/hess-17-4177-2013, 2013
H. Wang, I. C. Prentice, and J. Ni
Biogeosciences, 10, 5817–5830, https://doi.org/10.5194/bg-10-5817-2013, https://doi.org/10.5194/bg-10-5817-2013, 2013
D. I. Kelley, I. C. Prentice, S. P. Harrison, H. Wang, M. Simard, J. B. Fisher, and K. O. Willis
Biogeosciences, 10, 3313–3340, https://doi.org/10.5194/bg-10-3313-2013, https://doi.org/10.5194/bg-10-3313-2013, 2013
F. J. Bragg, I. C. Prentice, S. P. Harrison, G. Eglinton, P. N. Foster, F. Rommerskirchen, and J. Rullkötter
Biogeosciences, 10, 2001–2010, https://doi.org/10.5194/bg-10-2001-2013, https://doi.org/10.5194/bg-10-2001-2013, 2013
D. J. Charman, D. W. Beilman, M. Blaauw, R. K. Booth, S. Brewer, F. M. Chambers, J. A. Christen, A. Gallego-Sala, S. P. Harrison, P. D. M. Hughes, S. T. Jackson, A. Korhola, D. Mauquoy, F. J. G. Mitchell, I. C. Prentice, M. van der Linden, F. De Vleeschouwer, Z. C. Yu, J. Alm, I. E. Bauer, Y. M. C. Corish, M. Garneau, V. Hohl, Y. Huang, E. Karofeld, G. Le Roux, J. Loisel, R. Moschen, J. E. Nichols, T. M. Nieminen, G. M. MacDonald, N. R. Phadtare, N. Rausch, Ü. Sillasoo, G. T. Swindles, E.-S. Tuittila, L. Ukonmaanaho, M. Väliranta, S. van Bellen, B. van Geel, D. H. Vitt, and Y. Zhao
Biogeosciences, 10, 929–944, https://doi.org/10.5194/bg-10-929-2013, https://doi.org/10.5194/bg-10-929-2013, 2013
Related subject area
Biogeosciences
Alquimia v1.0: a generic interface to biogeochemical codes – a tool for interoperable development, prototyping and benchmarking for multiphysics simulators
Soil nitrous oxide emissions from global land ecosystems and their drivers within the LPJ-GUESS model (v4.1)
Parameterization toolbox for a physical–biogeochemical model compatible with FABM – a case study: the coupled 1D GOTM–ECOSMO E2E for the Sylt–Rømø Bight, North Sea
H2MV (v1.0): global physically constrained deep learning water cycle model with vegetation
NN-TOC v1: global prediction of total organic carbon in marine sediments using deep neural networks
China Wildfire Emission Dataset (ChinaWED v1) for the period 2012–2022
Process-based modeling of solar-induced chlorophyll fluorescence with VISIT-SIF version 1.0
Including the phosphorus cycle into the LPJ-GUESS dynamic global vegetation model (v4.1, r10994) – global patterns and temporal trends of N and P primary production limitation
A comprehensive land-surface vegetation model for multi-stream data assimilation, D&B v1.0
Sources of uncertainty in the SPITFIRE global fire model: development of LPJmL-SPITFIRE1.9 and directions for future improvements
The unicellular NUM v.0.91: a trait-based plankton model evaluated in two contrasting biogeographic provinces
FESOM2.1-REcoM3-MEDUSA2: an ocean–sea ice–biogeochemistry model coupled to a sediment model
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
Emulating grid-based forest carbon dynamics using machine learning: an LPJ-GUESS v4.1.1 application
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
pyVPRM: A next-generation Vegetation Photosynthesis and Respiration Model for the post-MODIS era
Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating the drought response of European tree species with the dynamic vegetation model LPJ-GUESS (v4.1, 97c552c5)
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
Development and assessment of the physical-biogeochemical ocean regional model in the Northwest Pacific: NPRT v1.0 (ROMS v3.9–TOPAZ v2.0)
TROLL 4.0: representing water and carbon fluxes, leaf phenology and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 1: Model description
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
TROLL 4.0: representing water and carbon fluxes, leaf phenology, and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 2: Model evaluation for two Amazonian sites
Estimation of above- and below-ground ecosystem parameters for the DVM-DOS-TEM v0.7.0 model using MADS v1.7.3: a synthetic case study
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
ML4Fire-XGBv1.0: Improving North American wildfire prediction by integrating a machine-learning fire model in a land surface model
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
Sergi Molins, Benjamin J. Andre, Jeffrey N. Johnson, Glenn E. Hammond, Benjamin N. Sulman, Konstantin Lipnikov, Marcus S. Day, James J. Beisman, Daniil Svyatsky, Hang Deng, Peter C. Lichtner, Carl I. Steefel, and J. David Moulton
Geosci. Model Dev., 18, 3241–3263, https://doi.org/10.5194/gmd-18-3241-2025, https://doi.org/10.5194/gmd-18-3241-2025, 2025
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Developing scientific software and making sure it functions properly requires a significant effort. As we advance our understanding of natural systems, however, there is the need to develop yet more complex models and codes. In this work, we present a piece of software that facilitates this work, specifically with regard to reactive processes. Existing tried-and-true codes are made available via this new interface, freeing up resources to focus on the new aspects of the problems at hand.
Jianyong Ma, Almut Arneth, Benjamin Smith, Peter Anthoni, Xu-Ri, Peter Eliasson, David Wårlind, Martin Wittenbrink, and Stefan Olin
Geosci. Model Dev., 18, 3131–3155, https://doi.org/10.5194/gmd-18-3131-2025, https://doi.org/10.5194/gmd-18-3131-2025, 2025
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Nitrous oxide (N2O) is a powerful greenhouse gas mainly released from natural and agricultural soils. This study examines how global soil N2O emissions changed from 1961 to 2020 and identifies key factors driving these changes using an ecological model. The findings highlight croplands as the largest source, with factors like fertilizer use and climate change enhancing emissions. Rising CO2 levels, however, can partially mitigate N2O emissions through increased plant nitrogen uptake.
Hoa Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
Geosci. Model Dev., 18, 2961–2982, https://doi.org/10.5194/gmd-18-2961-2025, https://doi.org/10.5194/gmd-18-2961-2025, 2025
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Parameterization is key in modeling to reproduce observations well but is often done manually. This study presents a particle-swarm-optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, providing different insights into ecosystem dynamics, and (2) optimized model complexity.
Zavud Baghirov, Martin Jung, Markus Reichstein, Marco Körner, and Basil Kraft
Geosci. Model Dev., 18, 2921–2943, https://doi.org/10.5194/gmd-18-2921-2025, https://doi.org/10.5194/gmd-18-2921-2025, 2025
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We use an innovative approach to studying the Earth's water cycle by integrating advanced machine learning techniques with a traditional water cycle model. Our model is designed to learn from observational data, with a particular emphasis on understanding the influence of vegetation on water movement. By closely aligning with real-world observations, our model offers new possibilities for enhancing our understanding of the water cycle and its interactions with vegetation.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
Geosci. Model Dev., 18, 2521–2544, https://doi.org/10.5194/gmd-18-2521-2025, https://doi.org/10.5194/gmd-18-2521-2025, 2025
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Our research uses deep learning to predict organic carbon stocks in ocean sediments, which is crucial for understanding their role in the global carbon cycle. By analysing over 22 000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate that the top 10 cm of ocean sediments hold about 156 Pg of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev., 18, 2509–2520, https://doi.org/10.5194/gmd-18-2509-2025, https://doi.org/10.5194/gmd-18-2509-2025, 2025
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The China Wildfire Emission Dataset (ChinaWED v1) estimated wildfire emissions in China during 2012–2022 as 78.13 Tg CO2, 279.47 Gg CH4, and 6.26 Gg N2O annually. Agricultural fires dominated emissions, while forest and grassland emissions decreased. Seasonal peaks occurred in late spring, with hotspots in northeast, southwest, and east China. The model emphasizes the importance of using localized emission factors and high-resolution fire estimates for accurate assessments.
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
Geosci. Model Dev., 18, 2329–2347, https://doi.org/10.5194/gmd-18-2329-2025, https://doi.org/10.5194/gmd-18-2329-2025, 2025
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Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical model developed based on the Vegetation Integrative Simulator for Trace gases (VISIT) to represent satellite-observed SIF. Our simulations reproduced the global distribution and seasonal variations in observed SIF. VISIT-SIF helps to improve photosynthetic processes through a combination of biogeochemical modeling and observed SIF.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
Geosci. Model Dev., 18, 2249–2274, https://doi.org/10.5194/gmd-18-2249-2025, https://doi.org/10.5194/gmd-18-2249-2025, 2025
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Our study maps global nitrogen (N) and phosphorus (P) availability and how they changed from 1901 to 2018. We find that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation increased, especially in the tropics, while N limitation decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, T. Luke Smallman, Susan C. Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zaehle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek S. El-Madany, Mirco Migliavacca, Marika Honkanen, Yann H. Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaétan Pique, Amanda Ojasalo, Shaun Quegan, Peter J. Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
Geosci. Model Dev., 18, 2137–2159, https://doi.org/10.5194/gmd-18-2137-2025, https://doi.org/10.5194/gmd-18-2137-2025, 2025
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When it comes to climate change, the land surface is where the vast majority of impacts happen. The task of monitoring those impacts across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us capture the changes that happen on our lands.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
Geosci. Model Dev., 18, 2021–2050, https://doi.org/10.5194/gmd-18-2021-2025, https://doi.org/10.5194/gmd-18-2021-2025, 2025
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Under climate change, the conditions necessary for wildfires to form are occurring more frequently in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a basis for future improvements.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev., 18, 1895–1916, https://doi.org/10.5194/gmd-18-1895-2025, https://doi.org/10.5194/gmd-18-1895-2025, 2025
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We describe and test the size-based Nutrient-Unicellular-Multicellular model, which defines unicellular plankton using a single set of parameters, on a eutrophic and oligotrophic ecosystem. The results demonstrate that both sites can be modeled with similar parameters and robust performance over a wide range of parameters. The study shows that the model is useful for non-experts and applicable for modeling ecosystems with limited data. It holds promise for evolutionary and deep-time climate models.
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev., 18, 977–1000, https://doi.org/10.5194/gmd-18-977-2025, https://doi.org/10.5194/gmd-18-977-2025, 2025
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Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change, the carbon storage in sediments slows down carbon cycling and influences feedbacks in the atmosphere–ocean–sediment system. This paper describes the coupling of a sediment model to an ocean biogeochemistry model and presents results under the pre-industrial climate and under CO2 perturbation.
Juliette Bernard, Elodie Salmon, Marielle Saunois, Shushi Peng, Penélope Serrano-Ortiz, Antoine Berchet, Palingamoorthy Gnanamoorthy, Joachim Jansen, and Philippe Ciais
Geosci. Model Dev., 18, 863–883, https://doi.org/10.5194/gmd-18-863-2025, https://doi.org/10.5194/gmd-18-863-2025, 2025
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Despite their importance, uncertainties remain in the evaluation of the drivers of temporal variability of methane emissions from wetlands on a global scale. Here, a simplified global model is developed, taking advantage of advances in remote-sensing data and in situ observations. The model reproduces the large spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights into sensitivity analyses.
Carolina Natel, David Martin Belda, Peter Anthoni, Neele Haß, Sam Rabin, and Almut Arneth
EGUsphere, https://doi.org/10.5194/egusphere-2024-4064, https://doi.org/10.5194/egusphere-2024-4064, 2025
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Complex models predict forest carbon responses to future climate change but are slow and computationally intensive, limiting large-scale analyses. We used machine learning to accelerate predictions from the LPJ-GUESS vegetation model. Our emulators, based on random forests and neural networks, achieved 97 % faster simulations. This approach enables rapid exploration of climate mitigation strategies and supports informed policy decisions.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie A. Fisher, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 18, 287–317, https://doi.org/10.5194/gmd-18-287-2025, https://doi.org/10.5194/gmd-18-287-2025, 2025
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Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Theo Glauch, Julia Marshall, Christoph Gerbig, Santiago Botía, Michał Gałkowski, Sanam N. Vardag, and André Butz
EGUsphere, https://doi.org/10.5194/egusphere-2024-3692, https://doi.org/10.5194/egusphere-2024-3692, 2025
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The Vegetation Photosynthesis and Respiration Model (VPRM) estimates carbon exchange between the atmosphere and biosphere by modeling gross primary production and respiration using satellite data and weather variables. Our new version, pyVPRM, supports diverse satellite products like Sentinel-2, MODIS, VIIRS and new land cover maps, enabling high spatial and temporal resolution. This improves flux estimates, especially in complex landscapes, and ensures continuity as MODIS nears decommissioning.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
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The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
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In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
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The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Benjamin Franklin Meyer, João Paulo Darela-Filho, Konstantin Gregor, Allan Buras, Qiao-Lin Gu, Andreas Krause, Daijun Liu, Phillip Papastefanou, Sijeh Asuk, Thorsten E. E. Grams, Christian S. Zang, and Anja Rammig
EGUsphere, https://doi.org/10.5194/egusphere-2024-3352, https://doi.org/10.5194/egusphere-2024-3352, 2024
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Climate change has increased the likelihood of drought events across Europe, potentially threatening European forest carbon sink. Dynamic vegetation models with mechanistic plant hydraulic architecture are needed to model these developments. We evaluate the plant hydraulic architecture version of LPJ-GUESS and show it's capability at capturing species-specific evapotranspiration responses to drought and reproducing flux observations of both gross primary production and evapotranspiration.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Daehyuk Kim, Hyun-Chae Jung, Jae-Hong Moon, and Na-Hyeon Lee
EGUsphere, https://doi.org/10.5194/egusphere-2024-1509, https://doi.org/10.5194/egusphere-2024-1509, 2024
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Physical–biogeochemical ocean global models is difficult to analyze oceanic environmental systems. To accurately understand the physical–biogeochemical processes at the regional scale, physical and biogeochemical models were coupled at a high resolution. The results successfully simulated the seasonal variations of chlorophyll and nutrients, particularly in the marginal seas, which were not captured by global models. The model is an important tool for studying physical–biogeochemical processes.
Isabelle Maréchaux, Fabian Jörg Fischer, Sylvain Schmitt, and Jérôme Chave
EGUsphere, https://doi.org/10.5194/egusphere-2024-3104, https://doi.org/10.5194/egusphere-2024-3104, 2024
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We describe TROLL 4.0, a simulator of forest dynamics that represents trees in a virtual space at one-meter resolution. Tree birth, growth, death and the underlying physiological processes such as carbon assimilation, water transpiration and leaf phenology depend on plant traits that are measured in the field for many individuals and species. The model is thus capable of jointly simulating forest structure, diversity and ecosystem functioning, a major challenge in modelling vegetation dynamics.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Sylvain Schmitt, Fabian Fischer, James Ball, Nicolas Barbier, Marion Boisseaux, Damien Bonal, Benoit Burban, Xiuzhi Chen, Géraldine Derroire, Jeremy Lichstein, Daniela Nemetschek, Natalia Restrepo-Coupe, Scott Saleska, Giacomo Sellan, Philippe Verley, Grégoire Vincent, Camille Ziegler, Jérôme Chave, and Isabelle Maréchaux
EGUsphere, https://doi.org/10.5194/egusphere-2024-3106, https://doi.org/10.5194/egusphere-2024-3106, 2024
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We evaluate the capability of TROLL 4.0, a simulator of forest dynamics, to represent tropical forest structure, diversity and functioning in two Amazonian forests. Evaluation data include forest inventories, carbon and water fluxes between the forest and the atmosphere, and leaf area and canopy height from remote-sensing products. The model realistically predicts the structure and composition, and the seasonality of carbon and water fluxes at both sites.
Elchin E. Jafarov, Helene Genet, Velimir V. Vesselinov, Valeria Briones, Aiza Kabeer, Andrew L. Mullen, Benjamin Maglio, Tobey Carman, Ruth Rutter, Joy Clein, Chu-Chun Chang, Dogukan Teber, Trevor Smith, Joshua M. Rady, Christina Schädel, Jennifer D. Watts, Brendan M. Rogers, and Susan M. Natali
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-158, https://doi.org/10.5194/gmd-2024-158, 2024
Revised manuscript accepted for GMD
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Thawing permafrost could greatly impact global climate. Our study improves modeling of carbon cycling in Arctic ecosystems. We developed an automated method to fine-tune a model that simulates carbon and nitrogen flows, using computer-generated data. Using computer-generated data, we tested our method and found it enhances accuracy and reduces the time needed for calibration. This work helps make climate predictions more reliable in sensitive permafrost regions.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Ye Liu, Huilin Huang, Sing-Chun Wang, Tao Zhang, Donghui Xu, and Yang Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-151, https://doi.org/10.5194/gmd-2024-151, 2024
Revised manuscript accepted for GMD
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This study integrates machine learning with a land surface model to improve wildfire predictions in North America. Traditional models struggle with accurately simulating burned areas due to simplified processes. By combining the predictive power of machine learning with a land model, our hybrid framework better captures fire dynamics. This approach enhances our understanding of wildfire behavior and aids in developing more effective climate and fire management strategies.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
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Short summary
Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Numerous estimates of water and energy balances depend on empirical equations requiring...
