Articles | Volume 16, issue 9
https://doi.org/10.5194/gmd-16-2323-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-16-2323-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
04 May 2023
Model description paper |
| 04 May 2023
| 04 May 2023
Development of an ecophysiology module in the GEOS-Chem chemical transport model version 12.2.0 to represent biosphere–atmosphere fluxes relevant for ozone air quality
Joey C. Y. Lam
Earth System Science Programme and Graduate Division of Earth and Atmospheric Sciences, Faculty of Science, The Chinese University of Hong Kong, Sha Tin, Hong Kong, China
Earth System Science Programme and Graduate Division of Earth and Atmospheric Sciences, Faculty of Science, The Chinese University of Hong Kong, Sha Tin, Hong Kong, China
State Key Laboratory of Agrobiotechnology and Institute of Environment, Energy and Sustainability, The Chinese University of Hong Kong, Sha Tin, Hong Kong, China
Jason A. Ducker
Department of Earth, Ocean and Atmospheric Science, Florida State University, Tallahassee, Florida, USA
Lynker Technologies LLC, Leesburg, Virginia, USA
Christopher D. Holmes
Department of Earth, Ocean and Atmospheric Science, Florida State University, Tallahassee, Florida, USA
Related authors
Yuxuan Wang, Nan Lin, Wei Li, Alex Guenther, Joey C. Y. Lam, Amos P. K. Tai, Mark J. Potosnak, and Roger Seco
Atmos. Chem. Phys., 22, 14189–14208, https://doi.org/10.5194/acp-22-14189-2022, https://doi.org/10.5194/acp-22-14189-2022, 2022
Short summary
Short summary
Drought can cause large changes in biogenic isoprene emissions. In situ field observations of isoprene emissions during droughts are confined by spatial coverage and, thus, provide limited constraints. We derived a drought stress factor based on satellite HCHO data for MEGAN2.1 in the GEOS-Chem model using water stress and temperature. This factor reduces the overestimation of isoprene emissions during severe droughts and improves the simulated O3 and organic aerosol responses to droughts.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
Short summary
Short summary
We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Kouji Adachi, Jack E. Dibb, Joseph M. Katich, Joshua P. Schwarz, Hongyu Guo, Pedro Campuzano-Jost, Jose L. Jimenez, Jeff Peischl, Christopher D. Holmes, and James Crawford
EGUsphere, https://doi.org/10.5194/egusphere-2024-880, https://doi.org/10.5194/egusphere-2024-880, 2024
Short summary
Short summary
We examined aerosol particles from wildfires and identified tarballs (TBs) during the FIREX-AQ campaign. This study revealed the compositions, abundance, sizes, and mixing states of TBs and showed that TBs formed as the smoke aged for up to 5 h. This study provides measurements of TBs from various biomass burning and ages and enhances the knowledge of TB emissions and our understanding of their climate impact.
Linia Tashmim, William C. Porter, Qianjie Chen, Becky Alexander, Charles H. Fite, Christopher D. Holmes, Jeffrey R. Pierce, Betty Croft, and Sakiko Ishino
Atmos. Chem. Phys., 24, 3379–3403, https://doi.org/10.5194/acp-24-3379-2024, https://doi.org/10.5194/acp-24-3379-2024, 2024
Short summary
Short summary
Dimethyl sulfide (DMS) is mostly emitted from ocean surfaces and represents the largest natural source of sulfur for the atmosphere. Once in the atmosphere, DMS forms stable oxidation products such as SO2 and H2SO4, which can subsequently contribute to airborne particle formation and growth. In this study, we update the DMS oxidation mechanism in the chemical transport model GEOS-Chem and describe resulting changes in particle growth as well as the overall global sulfur budget.
Amos P. K. Tai, Lina Luo, and Biao Luo
EGUsphere, https://doi.org/10.5194/egusphere-2024-293, https://doi.org/10.5194/egusphere-2024-293, 2024
Short summary
Short summary
We discuss our current understanding and knowledge gaps of how agriculture and food systems affect air quality, and how agricultural emissions can be mitigated. We argue that scientists need to address these gaps, especially as the importance of fossil fuel emissions is fading. This will help guide food-system transformation in economically viable, socially inclusive, and environmentally responsible manners, and is essential to help society achieve sustainable development.
Jia Mao, Amos P. K. Tai, David H. Y. Yung, Tiangang Yuan, Kong T. Chau, and Zhaozhong Feng
Atmos. Chem. Phys., 24, 345–366, https://doi.org/10.5194/acp-24-345-2024, https://doi.org/10.5194/acp-24-345-2024, 2024
Short summary
Short summary
Surface ozone (O3) is well-known for posing great threats to both human health and agriculture worldwide. However, a multidecadal assessment of the impacts of O3 on public health and agriculture in China is lacking without sufficient O3 observations. We used a hybrid approach combining a chemical transport model and machine learning to provide a robust dataset of O3 concentrations over the past 4 decades in China, thereby filling the gap in the long-term O3 trend and impact assessment in China.
Lisa Azzarello, Rebecca A. Washenfelder, Michael A. Robinson, Alessandro Franchin, Caroline C. Womack, Christopher D. Holmes, Steven S. Brown, Ann Middlebrook, Tim Newberger, Colm Sweeney, and Cora J. Young
Atmos. Chem. Phys., 23, 15643–15654, https://doi.org/10.5194/acp-23-15643-2023, https://doi.org/10.5194/acp-23-15643-2023, 2023
Short summary
Short summary
We present a molecular size-resolved offline analysis of water-soluble brown carbon collected on an aircraft during FIREX-AQ. The smoke plumes were aged 0 to 5 h, where absorption was dominated by small molecular weight molecules, brown carbon absorption downwind did not consistently decrease, and the measurements differed from online absorption measurements of the same samples. We show how differences between online and offline absorption could be related to different measurement conditions.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
Short summary
Short summary
Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Olivia E. Clifton, Donna Schwede, Christian Hogrefe, Jesse O. Bash, Sam Bland, Philip Cheung, Mhairi Coyle, Lisa Emberson, Johannes Flemming, Erick Fredj, Stefano Galmarini, Laurens Ganzeveld, Orestis Gazetas, Ignacio Goded, Christopher D. Holmes, László Horváth, Vincent Huijnen, Qian Li, Paul A. Makar, Ivan Mammarella, Giovanni Manca, J. William Munger, Juan L. Pérez-Camanyo, Jonathan Pleim, Limei Ran, Roberto San Jose, Sam J. Silva, Ralf Staebler, Shihan Sun, Amos P. K. Tai, Eran Tas, Timo Vesala, Tamás Weidinger, Zhiyong Wu, and Leiming Zhang
Atmos. Chem. Phys., 23, 9911–9961, https://doi.org/10.5194/acp-23-9911-2023, https://doi.org/10.5194/acp-23-9911-2023, 2023
Short summary
Short summary
A primary sink of air pollutants is dry deposition. Dry deposition estimates differ across the models used to simulate atmospheric chemistry. Here, we introduce an effort to examine dry deposition schemes from atmospheric chemistry models. We provide our approach’s rationale, document the schemes, and describe datasets used to drive and evaluate the schemes. We also launch the analysis of results by evaluating against observations and identifying the processes leading to model–model differences.
William F. Swanson, Chris D. Holmes, William R. Simpson, Kaitlyn Confer, Louis Marelle, Jennie L. Thomas, Lyatt Jaeglé, Becky Alexander, Shuting Zhai, Qianjie Chen, Xuan Wang, and Tomás Sherwen
Atmos. Chem. Phys., 22, 14467–14488, https://doi.org/10.5194/acp-22-14467-2022, https://doi.org/10.5194/acp-22-14467-2022, 2022
Short summary
Short summary
Radical bromine molecules are seen at higher concentrations during the Arctic spring. We use the global model GEOS-Chem to test whether snowpack and wind-blown snow sources can explain high bromine concentrations. We run this model for the entire year of 2015 and compare results to observations of bromine from floating platforms on the Arctic Ocean and at Utqiaġvik. We find that the model performs best when both sources are enabled but may overestimate bromine production in summer and fall.
Yuxuan Wang, Nan Lin, Wei Li, Alex Guenther, Joey C. Y. Lam, Amos P. K. Tai, Mark J. Potosnak, and Roger Seco
Atmos. Chem. Phys., 22, 14189–14208, https://doi.org/10.5194/acp-22-14189-2022, https://doi.org/10.5194/acp-22-14189-2022, 2022
Short summary
Short summary
Drought can cause large changes in biogenic isoprene emissions. In situ field observations of isoprene emissions during droughts are confined by spatial coverage and, thus, provide limited constraints. We derived a drought stress factor based on satellite HCHO data for MEGAN2.1 in the GEOS-Chem model using water stress and temperature. This factor reduces the overestimation of isoprene emissions during severe droughts and improves the simulated O3 and organic aerosol responses to droughts.
Ilann Bourgeois, Jeff Peischl, J. Andrew Neuman, Steven S. Brown, Hannah M. Allen, Pedro Campuzano-Jost, Matthew M. Coggon, Joshua P. DiGangi, Glenn S. Diskin, Jessica B. Gilman, Georgios I. Gkatzelis, Hongyu Guo, Hannah A. Halliday, Thomas F. Hanisco, Christopher D. Holmes, L. Gregory Huey, Jose L. Jimenez, Aaron D. Lamplugh, Young Ro Lee, Jakob Lindaas, Richard H. Moore, Benjamin A. Nault, John B. Nowak, Demetrios Pagonis, Pamela S. Rickly, Michael A. Robinson, Andrew W. Rollins, Vanessa Selimovic, Jason M. St. Clair, David Tanner, Krystal T. Vasquez, Patrick R. Veres, Carsten Warneke, Paul O. Wennberg, Rebecca A. Washenfelder, Elizabeth B. Wiggins, Caroline C. Womack, Lu Xu, Kyle J. Zarzana, and Thomas B. Ryerson
Atmos. Meas. Tech., 15, 4901–4930, https://doi.org/10.5194/amt-15-4901-2022, https://doi.org/10.5194/amt-15-4901-2022, 2022
Short summary
Short summary
Understanding fire emission impacts on the atmosphere is key to effective air quality management and requires accurate measurements. We present a comparison of airborne measurements of key atmospheric species in ambient air and in fire smoke. We show that most instruments performed within instrument uncertainties. In some cases, further work is needed to fully characterize instrument performance. Comparing independent measurements using different techniques is important to assess their accuracy.
Christopher D. Holmes
Atmos. Chem. Phys., 22, 9011–9015, https://doi.org/10.5194/acp-22-9011-2022, https://doi.org/10.5194/acp-22-9011-2022, 2022
Short summary
Short summary
Cloud water and ice enable reactions that lead to acid rain and alter atmospheric oxidants, among other impacts. This work develops and evaluates an efficient method of simulating cloud chemistry within global and regional atmospheric models in order to better understand the role of clouds in atmospheric chemistry.
Shihan Sun, Amos P. K. Tai, David H. Y. Yung, Anthony Y. H. Wong, Jason A. Ducker, and Christopher D. Holmes
Biogeosciences, 19, 1753–1776, https://doi.org/10.5194/bg-19-1753-2022, https://doi.org/10.5194/bg-19-1753-2022, 2022
Short summary
Short summary
We developed and used a terrestrial biosphere model to compare and evaluate widely used empirical dry deposition schemes with different stomatal approaches and found that using photosynthesis-based stomatal approaches can reduce biases in modeled dry deposition velocities in current chemical transport models. Our study shows systematic errors in current dry deposition schemes and the importance of representing plant ecophysiological processes in models under a changing climate.
Ka Ming Fung, Maria Val Martin, and Amos P. K. Tai
Biogeosciences, 19, 1635–1655, https://doi.org/10.5194/bg-19-1635-2022, https://doi.org/10.5194/bg-19-1635-2022, 2022
Short summary
Short summary
Fertilizer-induced ammonia detrimentally affects the environment by not only directly damaging ecosystems but also indirectly altering climate and soil fertility. To quantify these secondary impacts, we enabled CESM to simulate ammonia emission, chemical evolution, and deposition as a continuous cycle. If synthetic fertilizer use is to soar by 30 % from today's level, we showed that the counteracting impacts will increase the global ammonia emission by 3.3 Tg N per year.
Jiachen Zhu, Amos P. K. Tai, and Steve Hung Lam Yim
Atmos. Chem. Phys., 22, 765–782, https://doi.org/10.5194/acp-22-765-2022, https://doi.org/10.5194/acp-22-765-2022, 2022
Short summary
Short summary
This study assessed O3 damage to plant and the subsequent effects on meteorology and air quality in China, whereby O3, meteorology, and vegetation can co-evolve with each other. We provided comprehensive understanding about how O3–vegetation impacts adversely affect plant growth and crop production, and contribute to global warming and severe O3 air pollution in China. Our findings clearly pinpoint the need to consider the O3 damage effects in both air quality studies and climate change studies.
Jin Liao, Glenn M. Wolfe, Reem A. Hannun, Jason M. St. Clair, Thomas F. Hanisco, Jessica B. Gilman, Aaron Lamplugh, Vanessa Selimovic, Glenn S. Diskin, John B. Nowak, Hannah S. Halliday, Joshua P. DiGangi, Samuel R. Hall, Kirk Ullmann, Christopher D. Holmes, Charles H. Fite, Anxhelo Agastra, Thomas B. Ryerson, Jeff Peischl, Ilann Bourgeois, Carsten Warneke, Matthew M. Coggon, Georgios I. Gkatzelis, Kanako Sekimoto, Alan Fried, Dirk Richter, Petter Weibring, Eric C. Apel, Rebecca S. Hornbrook, Steven S. Brown, Caroline C. Womack, Michael A. Robinson, Rebecca A. Washenfelder, Patrick R. Veres, and J. Andrew Neuman
Atmos. Chem. Phys., 21, 18319–18331, https://doi.org/10.5194/acp-21-18319-2021, https://doi.org/10.5194/acp-21-18319-2021, 2021
Short summary
Short summary
Formaldehyde (HCHO) is an important oxidant precursor and affects the formation of O3 and other secondary pollutants in wildfire plumes. We disentangle the processes controlling HCHO evolution from wildfire plumes sampled by NASA DC-8 during FIREX-AQ. We find that OH abundance rather than normalized OH reactivity is the main driver of fire-to-fire variability in HCHO secondary production and estimate an effective HCHO yield per volatile organic compound molecule oxidized in wildfire plumes.
Xueying Liu, Amos P. K. Tai, and Ka Ming Fung
Atmos. Chem. Phys., 21, 17743–17758, https://doi.org/10.5194/acp-21-17743-2021, https://doi.org/10.5194/acp-21-17743-2021, 2021
Short summary
Short summary
With the rising food need, more intense agricultural activities will cause substantial perturbations to the nitrogen cycle, aggravating surface air pollution and imposing stress on terrestrial ecosystems. We studied how these ecosystem changes may modify biosphere–atmosphere exchanges, and further exert secondary effects on air quality, and demonstrated a link between agricultural activities and ozone air quality via the modulation of vegetation and soil biogeochemistry by nitrogen deposition.
Nicole Jacobs, William R. Simpson, Kelly A. Graham, Christopher Holmes, Frank Hase, Thomas Blumenstock, Qiansi Tu, Matthias Frey, Manvendra K. Dubey, Harrison A. Parker, Debra Wunch, Rigel Kivi, Pauli Heikkinen, Justus Notholt, Christof Petri, and Thorsten Warneke
Atmos. Chem. Phys., 21, 16661–16687, https://doi.org/10.5194/acp-21-16661-2021, https://doi.org/10.5194/acp-21-16661-2021, 2021
Short summary
Short summary
Spatial patterns of carbon dioxide seasonal cycle amplitude and summer drawdown timing derived from the OCO-2 satellite over northern high latitudes agree well with corresponding estimates from two models. The Asian boreal forest is anomalous with the largest amplitude and earliest seasonal drawdown. Modeled land contact tracers suggest that accumulated CO2 exchanges during atmospheric transport play a major role in shaping carbon dioxide seasonality in northern high-latitude regions.
Zachary C. J. Decker, Michael A. Robinson, Kelley C. Barsanti, Ilann Bourgeois, Matthew M. Coggon, Joshua P. DiGangi, Glenn S. Diskin, Frank M. Flocke, Alessandro Franchin, Carley D. Fredrickson, Georgios I. Gkatzelis, Samuel R. Hall, Hannah Halliday, Christopher D. Holmes, L. Gregory Huey, Young Ro Lee, Jakob Lindaas, Ann M. Middlebrook, Denise D. Montzka, Richard Moore, J. Andrew Neuman, John B. Nowak, Brett B. Palm, Jeff Peischl, Felix Piel, Pamela S. Rickly, Andrew W. Rollins, Thomas B. Ryerson, Rebecca H. Schwantes, Kanako Sekimoto, Lee Thornhill, Joel A. Thornton, Geoffrey S. Tyndall, Kirk Ullmann, Paul Van Rooy, Patrick R. Veres, Carsten Warneke, Rebecca A. Washenfelder, Andrew J. Weinheimer, Elizabeth Wiggins, Edward Winstead, Armin Wisthaler, Caroline Womack, and Steven S. Brown
Atmos. Chem. Phys., 21, 16293–16317, https://doi.org/10.5194/acp-21-16293-2021, https://doi.org/10.5194/acp-21-16293-2021, 2021
Short summary
Short summary
To understand air quality impacts from wildfires, we need an accurate picture of how wildfire smoke changes chemically both day and night as sunlight changes the chemistry of smoke. We present a chemical analysis of wildfire smoke as it changes from midday through the night. We use aircraft observations from the FIREX-AQ field campaign with a chemical box model. We find that even under sunlight typical
nighttimechemistry thrives and controls the fate of key smoke plume chemical processes.
Stefano Galmarini, Paul Makar, Olivia E. Clifton, Christian Hogrefe, Jesse O. Bash, Roberto Bellasio, Roberto Bianconi, Johannes Bieser, Tim Butler, Jason Ducker, Johannes Flemming, Alma Hodzic, Christopher D. Holmes, Ioannis Kioutsioukis, Richard Kranenburg, Aurelia Lupascu, Juan Luis Perez-Camanyo, Jonathan Pleim, Young-Hee Ryu, Roberto San Jose, Donna Schwede, Sam Silva, and Ralf Wolke
Atmos. Chem. Phys., 21, 15663–15697, https://doi.org/10.5194/acp-21-15663-2021, https://doi.org/10.5194/acp-21-15663-2021, 2021
Short summary
Short summary
This technical note presents the research protocols for phase 4 of the Air Quality Model Evaluation International Initiative (AQMEII4). This initiative has three goals: (i) to define the state of wet and dry deposition in regional models, (ii) to evaluate how dry deposition influences air concentration and flux predictions, and (iii) to identify the causes for prediction differences. The evaluation compares LULC-specific dry deposition and effective conductances and fluxes.
Xuan Wang, Daniel J. Jacob, William Downs, Shuting Zhai, Lei Zhu, Viral Shah, Christopher D. Holmes, Tomás Sherwen, Becky Alexander, Mathew J. Evans, Sebastian D. Eastham, J. Andrew Neuman, Patrick R. Veres, Theodore K. Koenig, Rainer Volkamer, L. Gregory Huey, Thomas J. Bannan, Carl J. Percival, Ben H. Lee, and Joel A. Thornton
Atmos. Chem. Phys., 21, 13973–13996, https://doi.org/10.5194/acp-21-13973-2021, https://doi.org/10.5194/acp-21-13973-2021, 2021
Short summary
Short summary
Halogen radicals have a broad range of implications for tropospheric chemistry, air quality, and climate. We present a new mechanistic description and comprehensive simulation of tropospheric halogens in a global 3-D model and compare the model results with surface and aircraft measurements. We find that halogen chemistry decreases the global tropospheric burden of ozone by 11 %, NOx by 6 %, and OH by 4 %.
Felix Leung, Karina Williams, Stephen Sitch, Amos P. K. Tai, Andy Wiltshire, Jemma Gornall, Elizabeth A. Ainsworth, Timothy Arkebauer, and David Scoby
Geosci. Model Dev., 13, 6201–6213, https://doi.org/10.5194/gmd-13-6201-2020, https://doi.org/10.5194/gmd-13-6201-2020, 2020
Short summary
Short summary
Ground-level ozone (O3) is detrimental to plant productivity and crop yield. Currently, the Joint UK Land Environment Simulator (JULES) includes a representation of crops (JULES-crop). The parameters for O3 damage in soybean in JULES-crop were calibrated against photosynthesis measurements from the Soybean Free Air Concentration Enrichment (SoyFACE). The result shows good performance for yield, and it helps contribute to understanding of the impacts of climate and air pollution on food security.
Lang Wang, Amos P. K. Tai, Chi-Yung Tam, Mehliyar Sadiq, Peng Wang, and Kevin K. W. Cheung
Atmos. Chem. Phys., 20, 11349–11369, https://doi.org/10.5194/acp-20-11349-2020, https://doi.org/10.5194/acp-20-11349-2020, 2020
Short summary
Short summary
We investigate the effects of future land use and land cover change (LULCC) on surface ozone air quality worldwide and find that LULCC can significantly influence ozone in North America and Europe via modifying surface energy balance, boundary-layer meteorology, and regional circulation. The strength of such “biogeophysical effects” of LULCC is strongly dependent on forest type and generally greater than the “biogeochemical effects” via changing deposition and emission fluxes alone.
Becky Alexander, Tomás Sherwen, Christopher D. Holmes, Jenny A. Fisher, Qianjie Chen, Mat J. Evans, and Prasad Kasibhatla
Atmos. Chem. Phys., 20, 3859–3877, https://doi.org/10.5194/acp-20-3859-2020, https://doi.org/10.5194/acp-20-3859-2020, 2020
Short summary
Short summary
Nitrogen oxides are important for the formation of tropospheric oxidants and are removed from the atmosphere mainly through the formation of nitrate. We compare observations of the oxygen isotopes of nitrate with a global model to test our understanding of the chemistry nitrate formation. We use the model to quantify nitrate formation pathways in the atmosphere and identify key uncertainties and their relevance for the oxidation capacity of the atmosphere.
Anthony Y. H. Wong, Jeffrey A. Geddes, Amos P. K. Tai, and Sam J. Silva
Atmos. Chem. Phys., 19, 14365–14385, https://doi.org/10.5194/acp-19-14365-2019, https://doi.org/10.5194/acp-19-14365-2019, 2019
Short summary
Short summary
Dry deposition is an important, but highly uncertain, sink for surface ozone. Several popular parameterizations exist to model this process, which vary with respect to how they depend on land cover and environmental variables. Here, we predict ozone dry deposition globally over 30 years, comparing four different approaches. We find that the choice of dry deposition parameterization affects the distribution, seasonal means, long-term trends, and interannual variability of surface ozone.
Shan S. Zhou, Amos P. K. Tai, Shihan Sun, Mehliyar Sadiq, Colette L. Heald, and Jeffrey A. Geddes
Atmos. Chem. Phys., 18, 14133–14148, https://doi.org/10.5194/acp-18-14133-2018, https://doi.org/10.5194/acp-18-14133-2018, 2018
Short summary
Short summary
Surface ozone pollution harms vegetation. As plants play key roles shaping air quality, the plant damage may further worsen air pollution. We use various computer models to examine such feedback effects, and find that ozone-induced decline in leaf density can lead to much higher ozone levels in forested regions, mostly due to the reduced ability of leaves to absorb pollutants. This study highlights the importance of considering the two-way interactions between plants and air pollution.
Jason A. Ducker, Christopher D. Holmes, Trevor F. Keenan, Silvano Fares, Allen H. Goldstein, Ivan Mammarella, J. William Munger, and Jordan Schnell
Biogeosciences, 15, 5395–5413, https://doi.org/10.5194/bg-15-5395-2018, https://doi.org/10.5194/bg-15-5395-2018, 2018
Short summary
Short summary
We have developed an accurate method (SynFlux) to estimate ozone deposition and stomatal uptake across 103 flux tower sites (43 US, 60 Europe), where ozone concentrations and fluxes have not been measured. In all, the SynFlux public dataset provides monthly values of ozone dry deposition for 926 site years across a wide array of ecosystems. The SynFlux dataset will promote further applications to ecosystem, air quality, or climate modeling across the geoscience community.
Danny M. Leung, Amos P. K. Tai, Loretta J. Mickley, Jonathan M. Moch, Aaron van Donkelaar, Lu Shen, and Randall V. Martin
Atmos. Chem. Phys., 18, 6733–6748, https://doi.org/10.5194/acp-18-6733-2018, https://doi.org/10.5194/acp-18-6733-2018, 2018
Short summary
Short summary
This paper investigates how large-scale weather systems control fine particulate matter (PM2.5) air quality in China. We show that winter monsoons, onshore winds and frontal rains can drive daily PM2.5 variability in different regions of China. We further project future PM2.5 concentration change by 2050s due to climate change, and verify that climate change has little benefit on future PM2.5 in Beijing, implying cutting down emissions is necessary to mitigate pollutions in megacities of China.
Yuanhong Zhao, Lin Zhang, Amos P. K. Tai, Youfan Chen, and Yuepeng Pan
Atmos. Chem. Phys., 17, 9781–9796, https://doi.org/10.5194/acp-17-9781-2017, https://doi.org/10.5194/acp-17-9781-2017, 2017
Short summary
Short summary
Human activities have substantially enhanced atmospheric deposition of reactive nitrogen, inducing complex environmental consequences. This study presents a first quantitative investigation of how anthropogenic nitrogen deposition could impact surface ozone air quality through surface–atmosphere exchange processes. We find important surface ozone changes driven by nitrogen deposition, which can be comparable with those due to historical climate and land use changes.
Mehliyar Sadiq, Amos P. K. Tai, Danica Lombardozzi, and Maria Val Martin
Atmos. Chem. Phys., 17, 3055–3066, https://doi.org/10.5194/acp-17-3055-2017, https://doi.org/10.5194/acp-17-3055-2017, 2017
Short summary
Short summary
Surface ozone harms vegetation, which can influence not only climate but also ozone air quality itself. We implement a scheme for ozone damage on vegetation into an Earth system model, so that for the first time simulated vegetation and ozone can coevolve in a fully coupled simulation. With ozone–vegetation coupling, simulated ozone is found to be significantly higher by up to 6 ppbv. Reduced dry deposition and enhanced isoprene emission contribute to most of these increases.
Yu Fu, Amos P. K. Tai, and Hong Liao
Atmos. Chem. Phys., 16, 10369–10383, https://doi.org/10.5194/acp-16-10369-2016, https://doi.org/10.5194/acp-16-10369-2016, 2016
Short summary
Short summary
The effects of climate change would partly counteract the emission-driven increase in PM2.5 in winter in most of eastern China, but exacerbate PM2.5 pollution in summer in North China Plain. Land cover and land use change might partially offset the increase in summertime PM2.5 but further enhance wintertime PM2.5 in the model by modifying the dry deposition of various PM2.5 precursors and biogenic volatile organic compound emissions, which also act as important factors in modulating air quality.
Sean Coburn, Barbara Dix, Eric Edgerton, Christopher D. Holmes, Douglas Kinnison, Qing Liang, Arnout ter Schure, Siyuan Wang, and Rainer Volkamer
Atmos. Chem. Phys., 16, 3743–3760, https://doi.org/10.5194/acp-16-3743-2016, https://doi.org/10.5194/acp-16-3743-2016, 2016
Short summary
Short summary
Here we present a day of case study measurements of the vertical distribution of bromine monoxide over the coastal region of the Gulf of Mexico. These measurements are used to assess the contribution of bromine radicals to the oxidation of elemental mercury in the troposphere. We find that the measured levels of bromine in the troposphere are sufficient to quickly oxidize mercury, which has significant implications for our understanding of atmospheric mercury processes.
L. Shen, L. J. Mickley, and A. P. K. Tai
Atmos. Chem. Phys., 15, 10925–10938, https://doi.org/10.5194/acp-15-10925-2015, https://doi.org/10.5194/acp-15-10925-2015, 2015
Short summary
Short summary
In this study, we have examined the effect of polar jet and Bermuda High on ozone air quality in the eastern United States. In the Midwest and northeast, the poleward shift of jet wind leads to reduced polar jet frequency, resulting in increased ozone there. In the southeast, the influence of Bermuda High on ozone variability depends on the location of its west edge. Westward movement increases the ozone only when the JJA Bermuda High west edge is located west of 85.4°W.
Y. Fu and A. P. K. Tai
Atmos. Chem. Phys., 15, 10093–10106, https://doi.org/10.5194/acp-15-10093-2015, https://doi.org/10.5194/acp-15-10093-2015, 2015
Short summary
Short summary
Historical land cover and land use change alone between 1980 and 2010 could lead to reduced summertime surface ozone by up to 4ppbv in East Asia. Climate change alone could lead to an increase in summertime ozone by 2-10ppbv in most of East Asia. Land cover change could offset part of the climate effect and lead to a previously unknown public health benefit. The sensitivity of surface ozone to land cover change is more dependent on dry deposition than isoprene emission in most of East Asia.
P. Achakulwisut, L. J. Mickley, L. T. Murray, A. P. K. Tai, J. O. Kaplan, and B. Alexander
Atmos. Chem. Phys., 15, 7977–7998, https://doi.org/10.5194/acp-15-7977-2015, https://doi.org/10.5194/acp-15-7977-2015, 2015
Short summary
Short summary
The atmosphere’s oxidative capacity determines the lifetime of many trace gases important to climate, chemistry, and human health. Yet uncertainties remain about its past variations, its controlling factors, and the radiative forcing of short-lived species it influences. To reduce these uncertainties, we must better quantify the natural emissions and chemical reaction mechanisms of organic compounds in the atmosphere, which play a role in governing the oxidative capacity.
U. S. Nair, Y. Wu, C. D. Holmes, A. Ter Schure, G. Kallos, and J. T. Walters
Atmos. Chem. Phys., 13, 10143–10157, https://doi.org/10.5194/acp-13-10143-2013, https://doi.org/10.5194/acp-13-10143-2013, 2013
Related subject area
Atmospheric sciences
WRF-Comfort: simulating microscale variability in outdoor heat stress at the city scale with a mesoscale model
Representing effects of surface heterogeneity in a multi-plume eddy diffusivity mass flux boundary layer parameterization
Can TROPOMI NO2 satellite data be used to track the drop in and resurgence of NOx emissions in Germany between 2019–2021 using the multi-source plume method (MSPM)?
A spatiotemporally separated framework for reconstructing the sources of atmospheric radionuclide releases
A parameterization scheme for the floating wind farm in a coupled atmosphere–wave model (COAWST v3.7)
RoadSurf 1.1: open-source road weather model library
Calibrating and validating the Integrated Valuation of Ecosystem Services and Tradeoffs (InVEST) urban cooling model: case studies in France and the United States
The ddeq Python library for point source quantification from remote sensing images (version 1.0)
Incorporating Oxygen Isotopes of Oxidized Reactive Nitrogen in the Regional Atmospheric Chemistry Mechanism, version 2 (ICOIN-RACM2)
A general comprehensive evaluation method for cross-scale precipitation forecasts
Implementation of a Simple Actuator Disk for Large-Eddy Simulation in the Weather Research and Forecasting Model (WRF-SADLES v1.2) for wind turbine wake simulation
WRF-PDAF v1.0: implementation and application of an online localized ensemble data assimilation framework
Implementation and evaluation of diabatic advection in the Lagrangian transport model MPTRAC 2.6
An improved and extended parameterization of the CO2 15 µm cooling in the middle and upper atmosphere (CO2_cool_fort-1.0)
Development of a multiphase chemical mechanism to improve secondary organic aerosol formation in CAABA/MECCA (version 4.7.0)
Application of regional meteorology and air quality models based on the microprocessor without interlocked piped stages (MIPS) and LoongArch CPU platforms
Investigating ground-level ozone pollution in semi-arid and arid regions of Arizona using WRF-Chem v4.4 modeling
An objective identification technique for potential vorticity structures associated with African easterly waves
Importance of microphysical settings for climate forcing by stratospheric SO2 injections as modeled by SOCOL-AERv2
Assessment of surface ozone products from downscaled CAMS reanalysis and CAMS daily forecast using urban air quality monitoring stations in Iran
Open boundary conditions for atmospheric large-eddy simulations and their implementation in DALES4.4
Efficient and stable coupling of the SuperdropNet deep-learning-based cloud microphysics (v0.1.0) with the ICON climate and weather model (v2.6.5)
Three-dimensional variational assimilation with a multivariate background error covariance for the Model for Prediction Across Scales – Atmosphere with the Joint Effort for Data assimilation Integration (JEDI-MPAS 2.0.0-beta)
FUME 2.0 – Flexible Universal processor for Modeling Emissions
DEUCE v1.0: a neural network for probabilistic precipitation nowcasting with aleatoric and epistemic uncertainties
Evaluation of multi-season convection-permitting atmosphere – mixed-layer ocean simulations of the Maritime Continent
Investigating the impact of coupling HARMONIE-WINS50 (cy43) meteorology to LOTOS-EUROS (v2.2.002) on a simulation of NO2 concentrations over the Netherlands
Balloon drift estimation and improved position estimates for radiosondes
Emission ensemble approach to improve the development of multi-scale emission inventories
What is the relative impact of nudging and online coupling on meteorological variables, pollutant concentrations and aerosol optical properties?
Diagnosing drivers of PM2.5 simulation biases in China from meteorology, chemical composition, and emission sources using an efficient machine learning method
Validation and analysis of the Polair3D v1.11 chemical transport model over Quebec
Assimilation of GNSS tropospheric gradients into the Weather Research and Forecasting (WRF) model version 4.4.1
Identifying atmospheric rivers and their poleward latent heat transport with generalizable neural networks: ARCNNv1
Assessing acetone for the GISS ModelE2.1 Earth system model
Bergen metrics: composite error metrics for assessing performance of climate models using EURO-CORDEX simulations
A dynamic approach to three-dimensional radiative transfer in subkilometer-scale numerical weather prediction models: the dynamic TenStream solver v1.0
Evaluation and development of surface layer scheme representation of temperature inversions over boreal forests in Arctic wintertime conditions
Modelling wind farm effects in HARMONIE–AROME (cycle 43.2.2) – Part 1: Implementation and evaluation
Analytical and adaptable initial conditions for dry and moist baroclinic waves in the global hydrostatic model OpenIFS (CY43R3)
Challenges of constructing and selecting the “perfect” boundary conditions for the large-eddy simulation model PALM
A machine learning approach for evaluating Southern Ocean cloud radiative biases in a global atmosphere model
Decision Support System version 1.0 (DSS v1.0) for air quality management in Delhi, India
How non-equilibrium aerosol chemistry impacts particle acidity: the GMXe AERosol CHEMistry (GMXe–AERCHEM, v1.0) sub-submodel of MESSy
A grid model for vertical correction of precipitable water vapor over the Chinese mainland and surrounding areas using random forest
MEXPLORER 1.0.0 – a mechanism explorer for analysis and visualization of chemical reaction pathways based on graph theory
Evaluating CHASER V4.0 global formaldehyde (HCHO) simulations using satellite, aircraft, and ground-based remote sensing observations
Advances and prospects of deep learning for medium-range extreme weather forecasting
An overview of the Western United States Dynamically Downscaled Dataset (WUS-D3)
cloudbandPy 1.0: an automated algorithm for the detection of tropical–extratropical cloud bands
Alberto Martilli, Negin Nazarian, E. Scott Krayenhoff, Jacob Lachapelle, Jiachen Lu, Esther Rivas, Alejandro Rodriguez-Sanchez, Beatriz Sanchez, and José Luis Santiago
Geosci. Model Dev., 17, 5023–5039, https://doi.org/10.5194/gmd-17-5023-2024, https://doi.org/10.5194/gmd-17-5023-2024, 2024
Short summary
Short summary
Here, we present a model that quantifies the thermal stress and its microscale variability at a city scale with a mesoscale model. This tool can have multiple applications, from early warnings of extreme heat to the vulnerable population to the evaluation of the effectiveness of heat mitigation strategies. It is the first model that includes information on microscale variability in a mesoscale model, something that is essential for fully evaluating heat stress.
Nathan P. Arnold
Geosci. Model Dev., 17, 5041–5056, https://doi.org/10.5194/gmd-17-5041-2024, https://doi.org/10.5194/gmd-17-5041-2024, 2024
Short summary
Short summary
Earth system models often represent the land surface at smaller scales than the atmosphere, but surface–atmosphere coupling uses only aggregated surface properties. This study presents a method to allow heterogeneous surface properties to modify boundary layer updrafts. The method is tested in single column experiments. Updraft properties are found to reasonably covary with surface conditions, and simulated boundary layer variability is enhanced over more heterogeneous land surfaces.
Enrico Dammers, Janot Tokaya, Christian Mielke, Kevin Hausmann, Debora Griffin, Chris McLinden, Henk Eskes, and Renske Timmermans
Geosci. Model Dev., 17, 4983–5007, https://doi.org/10.5194/gmd-17-4983-2024, https://doi.org/10.5194/gmd-17-4983-2024, 2024
Short summary
Short summary
Nitrogen dioxide (NOx) is produced by sources such as industry and traffic and is directly linked to negative impacts on health and the environment. The current construction of emission inventories to keep track of NOx emissions is slow and time-consuming. Satellite measurements provide a way to quickly and independently estimate emissions. In this study, we apply a consistent methodology to derive NOx emissions over Germany and illustrate the value of having such a method for fast projections.
Yuhan Xu, Sheng Fang, Xinwen Dong, and Shuhan Zhuang
Geosci. Model Dev., 17, 4961–4982, https://doi.org/10.5194/gmd-17-4961-2024, https://doi.org/10.5194/gmd-17-4961-2024, 2024
Short summary
Short summary
Recent atmospheric radionuclide leakages from unknown sources have posed a new challenge in nuclear emergency assessment. Reconstruction via environmental observations is the only feasible way to identify sources, but simultaneous reconstruction of the source location and release rate yields high uncertainties. We propose a spatiotemporally separated reconstruction strategy that avoids these uncertainties and outperforms state-of-the-art methods with respect to accuracy and uncertainty ranges.
Shaokun Deng, Shengmu Yang, Shengli Chen, Daoyi Chen, Xuefeng Yang, and Shanshan Cui
Geosci. Model Dev., 17, 4891–4909, https://doi.org/10.5194/gmd-17-4891-2024, https://doi.org/10.5194/gmd-17-4891-2024, 2024
Short summary
Short summary
Global offshore wind power development is moving from offshore to deeper waters, where floating offshore wind turbines have an advantage over bottom-fixed turbines. However, current wind farm parameterization schemes in mesoscale models are not applicable to floating turbines. We propose a floating wind farm parameterization scheme that accounts for the attenuation of the significant wave height by floating turbines. The results indicate that it has a significant effect on the power output.
Virve Eveliina Karsisto
Geosci. Model Dev., 17, 4837–4853, https://doi.org/10.5194/gmd-17-4837-2024, https://doi.org/10.5194/gmd-17-4837-2024, 2024
Short summary
Short summary
RoadSurf is an open-source library that contains functions from the Finnish Meteorological Institute’s road weather model. The evaluation of the library shows that it is well suited for making road surface temperature forecasts. The evaluation was done by making forecasts for about 400 road weather stations in Finland with the library. Accurate forecasts help road authorities perform salting and plowing operations at the right time and keep roads safe for drivers.
Perrine Hamel, Martí Bosch, Léa Tardieu, Aude Lemonsu, Cécile de Munck, Chris Nootenboom, Vincent Viguié, Eric Lonsdorf, James A. Douglass, and Richard P. Sharp
Geosci. Model Dev., 17, 4755–4771, https://doi.org/10.5194/gmd-17-4755-2024, https://doi.org/10.5194/gmd-17-4755-2024, 2024
Short summary
Short summary
The InVEST Urban Cooling model estimates the cooling effect of vegetation in cities. We further developed an algorithm to facilitate model calibration and evaluation. Applying the algorithm to case studies in France and in the United States, we found that nighttime air temperature estimates compare well with reference datasets. Estimated change in temperature from a land cover scenario compares well with an alternative model estimate, supporting the use of the model for urban planning decisions.
Gerrit Kuhlmann, Erik Koene, Sandro Meier, Diego Santaren, Grégoire Broquet, Frédéric Chevallier, Janne Hakkarainen, Janne Nurmela, Laia Amorós, Johanna Tamminen, and Dominik Brunner
Geosci. Model Dev., 17, 4773–4789, https://doi.org/10.5194/gmd-17-4773-2024, https://doi.org/10.5194/gmd-17-4773-2024, 2024
Short summary
Short summary
We present a Python software library for data-driven emission quantification (ddeq). It can be used to determine the emissions of hot spots (cities, power plants and industry) from remote sensing images using different methods. ddeq can be extended for new datasets and methods, providing a powerful community tool for users and developers. The application of the methods is shown using Jupyter notebooks included in the library.
Wendell W. Walters, Masayuki Takeuchi, Nga L. Ng, and Meredith G. Hastings
Geosci. Model Dev., 17, 4673–4687, https://doi.org/10.5194/gmd-17-4673-2024, https://doi.org/10.5194/gmd-17-4673-2024, 2024
Short summary
Short summary
The study introduces a novel chemical mechanism for explicitly tracking oxygen isotope transfer in oxidized reactive nitrogen and odd oxygen using the Regional Atmospheric Chemistry Mechanism, version 2. This model enhances our ability to simulate and compare oxygen isotope compositions of reactive nitrogen, revealing insights into oxidation chemistry. The approach shows promise for improving atmospheric chemistry models and tropospheric oxidation capacity predictions.
Bing Zhang, Mingjian Zeng, Anning Huang, Zhengkun Qin, Couhua Liu, Wenru Shi, Xin Li, Kefeng Zhu, Chunlei Gu, and Jialing Zhou
Geosci. Model Dev., 17, 4579–4601, https://doi.org/10.5194/gmd-17-4579-2024, https://doi.org/10.5194/gmd-17-4579-2024, 2024
Short summary
Short summary
By directly analyzing the proximity of precipitation forecasts and observations, a precipitation accuracy score (PAS) method was constructed. This method does not utilize a traditional contingency-table-based classification verification; however, it can replace the threat score (TS), equitable threat score (ETS), and other skill score methods, and it can be used to calculate the accuracy of numerical models or quantitative precipitation forecasts.
Hai Bui, Mostafa Bakhoday-Paskyabi, and Mohammadreza Mohammadpour-Penchah
Geosci. Model Dev., 17, 4447–4465, https://doi.org/10.5194/gmd-17-4447-2024, https://doi.org/10.5194/gmd-17-4447-2024, 2024
Short summary
Short summary
We developed a new wind turbine wake model, the Simple Actuator Disc for Large Eddy Simulation (SADLES), integrated with the widely used Weather Research and Forecasting (WRF) model. WRF-SADLES accurately simulates wind turbine wakes at resolutions of a few dozen meters, aligning well with idealized simulations and observational measurements. This makes WRF-SADLES a promising tool for wind energy research, offering a balance between accuracy, computational efficiency, and ease of implementation.
Changliang Shao and Lars Nerger
Geosci. Model Dev., 17, 4433–4445, https://doi.org/10.5194/gmd-17-4433-2024, https://doi.org/10.5194/gmd-17-4433-2024, 2024
Short summary
Short summary
This paper introduces and evaluates WRF-PDAF, a fully online-coupled ensemble data assimilation (DA) system. A key advantage of the WRF-PDAF configuration is its ability to concurrently integrate all ensemble states, eliminating the need for time-consuming distribution and collection of ensembles during the coupling communication. The extra time required for DA amounts to only 20.6 % per cycle. Twin experiment results underscore the effectiveness of the WRF-PDAF system.
Jan Clemens, Lars Hoffmann, Bärbel Vogel, Sabine Grießbach, and Nicole Thomas
Geosci. Model Dev., 17, 4467–4493, https://doi.org/10.5194/gmd-17-4467-2024, https://doi.org/10.5194/gmd-17-4467-2024, 2024
Short summary
Short summary
Lagrangian transport models simulate the transport of air masses in the atmosphere. For example, one model (CLaMS) is well suited to calculating transport as it uses a special coordinate system and special vertical wind. However, it only runs inefficiently on modern supercomputers. Hence, we have implemented the benefits of CLaMS into a new model (MPTRAC), which is already highly efficient on modern supercomputers. Finally, in extensive tests, we showed that CLaMS and MPTRAC agree very well.
Manuel López-Puertas, Federico Fabiano, Victor Fomichev, Bernd Funke, and Daniel R. Marsh
Geosci. Model Dev., 17, 4401–4432, https://doi.org/10.5194/gmd-17-4401-2024, https://doi.org/10.5194/gmd-17-4401-2024, 2024
Short summary
Short summary
The radiative infrared cooling of CO2 in the middle atmosphere is crucial for computing its thermal structure. It requires one however to include non-local thermodynamic equilibrium processes which are computationally very expensive, which cannot be afforded by climate models. In this work, we present an updated, efficient, accurate and very fast (~50 µs) parameterization of that cooling able to cope with CO2 abundances from half the pre-industrial values to 10 times the current abundance.
Felix Wieser, Rolf Sander, Changmin Cho, Hendrik Fuchs, Thorsten Hohaus, Anna Novelli, Ralf Tillmann, and Domenico Taraborrelli
Geosci. Model Dev., 17, 4311–4330, https://doi.org/10.5194/gmd-17-4311-2024, https://doi.org/10.5194/gmd-17-4311-2024, 2024
Short summary
Short summary
The chemistry scheme of the atmospheric box model CAABA/MECCA is expanded to achieve an improved aerosol formation from emitted organic compounds. In addition to newly added reactions, temperature-dependent partitioning of all new species between the gas and aqueous phases is estimated and included in the pre-existing scheme. Sensitivity runs show an overestimation of key compounds from isoprene, which can be explained by a lack of aqueous-phase degradation reactions and box model limitations.
Zehua Bai, Qizhong Wu, Kai Cao, Yiming Sun, and Huaqiong Cheng
Geosci. Model Dev., 17, 4383–4399, https://doi.org/10.5194/gmd-17-4383-2024, https://doi.org/10.5194/gmd-17-4383-2024, 2024
Short summary
Short summary
There is relatively limited research on the application of scientific computing on RISC CPU platforms. The MIPS architecture CPUs, a type of RISC CPUs, have distinct advantages in energy efficiency and scalability. The air quality modeling system can run stably on the MIPS and LoongArch platforms, and the experiment results verify the stability of scientific computing on the platforms. The work provides a technical foundation for the scientific application based on MIPS and LoongArch.
Yafang Guo, Chayan Roychoudhury, Mohammad Amin Mirrezaei, Rajesh Kumar, Armin Sorooshian, and Avelino F. Arellano
Geosci. Model Dev., 17, 4331–4353, https://doi.org/10.5194/gmd-17-4331-2024, https://doi.org/10.5194/gmd-17-4331-2024, 2024
Short summary
Short summary
This research focuses on surface ozone (O3) pollution in Arizona, a historically air-quality-challenged arid and semi-arid region in the US. The unique characteristics of this kind of region, e.g., intense heat, minimal moisture, and persistent desert shrubs, play a vital role in comprehending O3 exceedances. Using the WRF-Chem model, we analyzed O3 levels in the pre-monsoon month, revealing the model's skill in capturing diurnal and MDA8 O3 levels.
Christoph Fischer, Andreas H. Fink, Elmar Schömer, Marc Rautenhaus, and Michael Riemer
Geosci. Model Dev., 17, 4213–4228, https://doi.org/10.5194/gmd-17-4213-2024, https://doi.org/10.5194/gmd-17-4213-2024, 2024
Short summary
Short summary
This study presents a method for identifying and tracking 3-D potential vorticity structures within African easterly waves (AEWs). Each identified structure is characterized by descriptors, including its 3-D position and orientation, which have been validated through composite comparisons. A trough-centric perspective on the descriptors reveals the evolution and distinct characteristics of AEWs. These descriptors serve as valuable statistical inputs for the study of AEW-related phenomena.
Sandro Vattioni, Andrea Stenke, Beiping Luo, Gabriel Chiodo, Timofei Sukhodolov, Elia Wunderlin, and Thomas Peter
Geosci. Model Dev., 17, 4181–4197, https://doi.org/10.5194/gmd-17-4181-2024, https://doi.org/10.5194/gmd-17-4181-2024, 2024
Short summary
Short summary
We investigate the sensitivity of aerosol size distributions in the presence of strong SO2 injections for climate interventions or after volcanic eruptions to the call sequence and frequency of the routines for nucleation and condensation in sectional aerosol models with operator splitting. Using the aerosol–chemistry–climate model SOCOL-AERv2, we show that the radiative and chemical outputs are sensitive to these settings at high H2SO4 supersaturations and how to obtain reliable results.
Najmeh Kaffashzadeh and Abbas-Ali Aliakbari Bidokhti
Geosci. Model Dev., 17, 4155–4179, https://doi.org/10.5194/gmd-17-4155-2024, https://doi.org/10.5194/gmd-17-4155-2024, 2024
Short summary
Short summary
This paper assesses the capability of two state-of-the-art global datasets in simulating surface ozone over Iran using a new methodology. It is found that the global model data need to be downscaled for regulatory purposes or policy applications at local scales. The method can be useful not only for the evaluation but also for the prediction of other chemical species, such as aerosols.
Franciscus Liqui Lung, Christian Jakob, A. Pier Siebesma, and Fredrik Jansson
Geosci. Model Dev., 17, 4053–4076, https://doi.org/10.5194/gmd-17-4053-2024, https://doi.org/10.5194/gmd-17-4053-2024, 2024
Short summary
Short summary
Traditionally, high-resolution atmospheric models employ periodic boundary conditions, which limit simulations to domains without horizontal variations. In this research open boundary conditions are developed to replace the periodic boundary conditions. The implementation is tested in a controlled setup, and the results show minimal disturbances. Using these boundary conditions, high-resolution models can be forced by a coarser model to study atmospheric phenomena in realistic background states.
Caroline Arnold, Shivani Sharma, Tobias Weigel, and David S. Greenberg
Geosci. Model Dev., 17, 4017–4029, https://doi.org/10.5194/gmd-17-4017-2024, https://doi.org/10.5194/gmd-17-4017-2024, 2024
Short summary
Short summary
In atmospheric models, rain formation is simplified to be computationally efficient. We trained a machine learning model, SuperdropNet, to emulate warm-rain formation based on super-droplet simulations. Here, we couple SuperdropNet with an atmospheric model in a warm-bubble experiment and find that the coupled simulation runs stable and produces reasonable results, making SuperdropNet a viable ML proxy for droplet simulations. We also present a comprehensive benchmark for coupling architectures.
Byoung-Joo Jung, Benjamin Ménétrier, Chris Snyder, Zhiquan Liu, Jonathan J. Guerrette, Junmei Ban, Ivette Hernández Baños, Yonggang G. Yu, and William C. Skamarock
Geosci. Model Dev., 17, 3879–3895, https://doi.org/10.5194/gmd-17-3879-2024, https://doi.org/10.5194/gmd-17-3879-2024, 2024
Short summary
Short summary
We describe the multivariate static background error covariance (B) for the JEDI-MPAS 3D-Var data assimilation system. With tuned B parameters, the multivariate B gives physically balanced analysis increment fields in the single-observation test framework. In the month-long cycling experiment with a global 60 km mesh, 3D-Var with static B performs stably. Due to its simple workflow and minimal computational requirements, JEDI-MPAS 3D-Var can be useful for the research community.
Michal Belda, Nina Benešová, Jaroslav Resler, Peter Huszár, Ondřej Vlček, Pavel Krč, Jan Karlický, Pavel Juruš, and Kryštof Eben
Geosci. Model Dev., 17, 3867–3878, https://doi.org/10.5194/gmd-17-3867-2024, https://doi.org/10.5194/gmd-17-3867-2024, 2024
Short summary
Short summary
For modeling atmospheric chemistry, it is necessary to provide data on emissions of pollutants. These can come from various sources and in various forms, and preprocessing of the data to be ingestible by chemistry models can be quite challenging. We developed the FUME processor to use a database layer that internally transforms all input data into a rigid structure, facilitating further processing to allow for emission processing from the continental to the street scale.
Bent Harnist, Seppo Pulkkinen, and Terhi Mäkinen
Geosci. Model Dev., 17, 3839–3866, https://doi.org/10.5194/gmd-17-3839-2024, https://doi.org/10.5194/gmd-17-3839-2024, 2024
Short summary
Short summary
Probabilistic precipitation nowcasting (local forecasting for 0–6 h) is crucial for reducing damage from events like flash floods. For this goal, we propose the DEUCE neural-network-based model which uses data and model uncertainties to generate an ensemble of potential precipitation development scenarios for the next hour. Trained and evaluated with Finnish precipitation composites, DEUCE was found to produce more skillful and reliable nowcasts than established models.
Emma Howard, Steven Woolnough, Nicholas Klingaman, Daniel Shipley, Claudio Sanchez, Simon C. Peatman, Cathryn E. Birch, and Adrian J. Matthews
Geosci. Model Dev., 17, 3815–3837, https://doi.org/10.5194/gmd-17-3815-2024, https://doi.org/10.5194/gmd-17-3815-2024, 2024
Short summary
Short summary
This paper describes a coupled atmosphere–mixed-layer ocean simulation setup that will be used to study weather processes in Southeast Asia. The set-up has been used to compare high-resolution simulations, which are able to partially resolve storms, to coarser simulations, which cannot. We compare the model performance at representing variability of rainfall and sea surface temperatures across length scales between the coarse and fine models.
Andrés Yarce Botero, Michiel van Weele, Arjo Segers, Pier Siebesma, and Henk Eskes
Geosci. Model Dev., 17, 3765–3781, https://doi.org/10.5194/gmd-17-3765-2024, https://doi.org/10.5194/gmd-17-3765-2024, 2024
Short summary
Short summary
HARMONIE WINS50 reanalysis data with 0.025° × 0.025° resolution from 2019 to 2021 were coupled with the LOTOS-EUROS Chemical Transport Model. HARMONIE and ECMWF meteorology configurations against Cabauw observations (52.0° N, 4.9° W) were evaluated as simulated NO2 concentrations with ground-level sensors. Differences in crucial meteorological input parameters (boundary layer height, vertical diffusion coefficient) between the hydrostatic and non-hydrostatic models were analysed.
Ulrich Voggenberger, Leopold Haimberger, Federico Ambrogi, and Paul Poli
Geosci. Model Dev., 17, 3783–3799, https://doi.org/10.5194/gmd-17-3783-2024, https://doi.org/10.5194/gmd-17-3783-2024, 2024
Short summary
Short summary
This paper presents a method for calculating balloon drift from historical radiosonde ascent data. The drift can reach distances of several hundred kilometres and is often neglected. Verification shows the beneficial impact of the more accurate balloon position on model assimilation. The method is not limited to radiosondes but would also work for dropsondes, ozonesondes, or any other in situ sonde carried by the wind in the pre-GNSS era, provided the necessary information is available.
Philippe Thunis, Jeroen Kuenen, Enrico Pisoni, Bertrand Bessagnet, Manjola Banja, Lech Gawuc, Karol Szymankiewicz, Diego Guizardi, Monica Crippa, Susana Lopez-Aparicio, Marc Guevara, Alexander De Meij, Sabine Schindlbacher, and Alain Clappier
Geosci. Model Dev., 17, 3631–3643, https://doi.org/10.5194/gmd-17-3631-2024, https://doi.org/10.5194/gmd-17-3631-2024, 2024
Short summary
Short summary
An ensemble emission inventory is created with the aim of monitoring the status and progress made with the development of EU-wide inventories. This emission ensemble serves as a common benchmark for the screening and allows for the comparison of more than two inventories at a time. Because the emission “truth” is unknown, the approach does not tell which inventory is the closest to reality, but it identifies inconsistencies that require special attention.
Laurent Menut, Bertrand Bessagnet, Arineh Cholakian, Guillaume Siour, Sylvain Mailler, and Romain Pennel
Geosci. Model Dev., 17, 3645–3665, https://doi.org/10.5194/gmd-17-3645-2024, https://doi.org/10.5194/gmd-17-3645-2024, 2024
Short summary
Short summary
This study is about the modelling of the atmospheric composition in Europe during the summer of 2022, when massive wildfires were observed. It is a sensitivity study dedicated to the relative impacts of two modelling processes that are able to modify the meteorology used for the calculation of the atmospheric chemistry and transport of pollutants.
Shuai Wang, Mengyuan Zhang, Yueqi Gao, Peng Wang, Qingyan Fu, and Hongliang Zhang
Geosci. Model Dev., 17, 3617–3629, https://doi.org/10.5194/gmd-17-3617-2024, https://doi.org/10.5194/gmd-17-3617-2024, 2024
Short summary
Short summary
Numerical models are widely used in air pollution modeling but suffer from significant biases. The machine learning model designed in this study shows high efficiency in identifying such biases. Meteorology (relative humidity and cloud cover), chemical composition (secondary organic components and dust aerosols), and emission sources (residential activities) are diagnosed as the main drivers of bias in modeling PM2.5, a typical air pollutant. The results will help to improve numerical models.
Shoma Yamanouchi, Shayamilla Mahagammulla Gamage, Sara Torbatian, Jad Zalzal, Laura Minet, Audrey Smargiassi, Ying Liu, Ling Liu, Forood Azargoshasbi, Jinwoong Kim, Youngseob Kim, Daniel Yazgi, and Marianne Hatzopoulou
Geosci. Model Dev., 17, 3579–3597, https://doi.org/10.5194/gmd-17-3579-2024, https://doi.org/10.5194/gmd-17-3579-2024, 2024
Short summary
Short summary
Air pollution is a major health hazard, and chemical transport models (CTMs) are valuable tools that aid in our understanding of the risks of air pollution at both local and regional scales. In this study, the Polair3D CTM of the Polyphemus air quality modeling platform was set up over Quebec, Canada, to assess the model’s capability in predicting key air pollutant species over the region, at seasonal temporal scales and at regional spatial scales.
Rohith Thundathil, Florian Zus, Galina Dick, and Jens Wickert
Geosci. Model Dev., 17, 3599–3616, https://doi.org/10.5194/gmd-17-3599-2024, https://doi.org/10.5194/gmd-17-3599-2024, 2024
Short summary
Short summary
Global Navigation Satellite Systems (GNSS) provides moisture observations through its densely distributed ground station network. In this research, we assimilate a new type of observation called tropospheric gradient observations, which has never been incorporated into a weather model. We develop a forward operator for gradient-based observations and conduct an assimilation impact study. The study shows significant improvements in the model's humidity fields.
Ankur Mahesh, Travis A. O'Brien, Burlen Loring, Abdelrahman Elbashandy, William Boos, and William D. Collins
Geosci. Model Dev., 17, 3533–3557, https://doi.org/10.5194/gmd-17-3533-2024, https://doi.org/10.5194/gmd-17-3533-2024, 2024
Short summary
Short summary
Atmospheric rivers (ARs) are extreme weather events that can alleviate drought or cause billions of US dollars in flood damage. We train convolutional neural networks (CNNs) to detect ARs with an estimate of the uncertainty. We present a framework to generalize these CNNs to a variety of datasets of past, present, and future climate. Using a simplified simulation of the Earth's atmosphere, we validate the CNNs. We explore the role of ARs in maintaining energy balance in the Earth system.
Alexandra Rivera, Kostas Tsigaridis, Gregory Faluvegi, and Drew Shindell
Geosci. Model Dev., 17, 3487–3505, https://doi.org/10.5194/gmd-17-3487-2024, https://doi.org/10.5194/gmd-17-3487-2024, 2024
Short summary
Short summary
This paper describes and evaluates an improvement to the representation of acetone in the GISS ModelE2.1 Earth system model. We simulate acetone's concentration and transport across the atmosphere as well as its dependence on chemistry, the ocean, and various global emissions. Comparisons of our model’s estimates to past modeling studies and field measurements have shown encouraging results. Ultimately, this paper contributes to a broader understanding of acetone's role in the atmosphere.
Alok K. Samantaray, Priscilla A. Mooney, and Carla A. Vivacqua
Geosci. Model Dev., 17, 3321–3339, https://doi.org/10.5194/gmd-17-3321-2024, https://doi.org/10.5194/gmd-17-3321-2024, 2024
Short summary
Short summary
Any interpretation of climate model data requires a comprehensive evaluation of the model performance. Numerous error metrics exist for this purpose, and each focuses on a specific aspect of the relationship between reference and model data. Thus, a comprehensive evaluation demands the use of multiple error metrics. However, this can lead to confusion. We propose a clustering technique to reduce the number of error metrics needed and a composite error metric to simplify the interpretation.
Richard Maier, Fabian Jakub, Claudia Emde, Mihail Manev, Aiko Voigt, and Bernhard Mayer
Geosci. Model Dev., 17, 3357–3383, https://doi.org/10.5194/gmd-17-3357-2024, https://doi.org/10.5194/gmd-17-3357-2024, 2024
Short summary
Short summary
Based on the TenStream solver, we present a new method to accelerate 3D radiative transfer towards the speed of currently used 1D solvers. Using a shallow-cumulus-cloud time series, we evaluate the performance of this new solver in terms of both speed and accuracy. Compared to a 3D benchmark simulation, we show that our new solver is able to determine much more accurate irradiances and heating rates than a 1D δ-Eddington solver, even when operated with a similar computational demand.
Julia Maillard, Jean-Christophe Raut, and François Ravetta
Geosci. Model Dev., 17, 3303–3320, https://doi.org/10.5194/gmd-17-3303-2024, https://doi.org/10.5194/gmd-17-3303-2024, 2024
Short summary
Short summary
Atmospheric models struggle to reproduce the strong temperature inversions in the vicinity of the surface over forested areas in the Arctic winter. In this paper, we develop modified simplified versions of surface layer schemes widely used by the community. Our modifications are used to correct the fact that original schemes place strong limits on the turbulent collapse, leading to a lower surface temperature gradient at low wind speeds. Modified versions show a better performance.
Jana Fischereit, Henrik Vedel, Xiaoli Guo Larsén, Natalie E. Theeuwes, Gregor Giebel, and Eigil Kaas
Geosci. Model Dev., 17, 2855–2875, https://doi.org/10.5194/gmd-17-2855-2024, https://doi.org/10.5194/gmd-17-2855-2024, 2024
Short summary
Short summary
Wind farms impact local wind and turbulence. To incorporate these effects in weather forecasting, the explicit wake parameterization (EWP) is added to the forecasting model HARMONIE–AROME. We evaluate EWP using flight data above and downstream of wind farms, comparing it with an alternative wind farm parameterization and another weather model. Results affirm the correct implementation of EWP, emphasizing the necessity of accounting for wind farm effects in accurate weather forecasting.
Clément Bouvier, Daan van den Broek, Madeleine Ekblom, and Victoria A. Sinclair
Geosci. Model Dev., 17, 2961–2986, https://doi.org/10.5194/gmd-17-2961-2024, https://doi.org/10.5194/gmd-17-2961-2024, 2024
Short summary
Short summary
An analytical initial background state has been developed for moist baroclinic wave simulation on an aquaplanet and implemented into OpenIFS. Seven parameters can be controlled, which are used to generate the background states and the development of baroclinic waves. The meteorological and numerical stability has been assessed. Resulting baroclinic waves have proven to be realistic and sensitive to the jet's width.
Jelena Radović, Michal Belda, Jaroslav Resler, Kryštof Eben, Martin Bureš, Jan Geletič, Pavel Krč, Hynek Řezníček, and Vladimír Fuka
Geosci. Model Dev., 17, 2901–2927, https://doi.org/10.5194/gmd-17-2901-2024, https://doi.org/10.5194/gmd-17-2901-2024, 2024
Short summary
Short summary
Boundary conditions are of crucial importance for numerical model (e.g., PALM) validation studies and have a large influence on the model results, especially when studying the atmosphere of real, complex, and densely built urban environments. Our experiments with different driving conditions for the large-eddy simulation model PALM show its strong dependency on boundary conditions, which is important for the proper separation of errors coming from the boundary conditions and the model itself.
Sonya L. Fiddes, Marc D. Mallet, Alain Protat, Matthew T. Woodhouse, Simon P. Alexander, and Kalli Furtado
Geosci. Model Dev., 17, 2641–2662, https://doi.org/10.5194/gmd-17-2641-2024, https://doi.org/10.5194/gmd-17-2641-2024, 2024
Short summary
Short summary
In this study we present an evaluation that considers complex, non-linear systems in a holistic manner. This study uses XGBoost, a machine learning algorithm, to predict the simulated Southern Ocean shortwave radiation bias in the ACCESS model using cloud property biases as predictors. We then used a novel feature importance analysis to quantify the role that each cloud bias plays in predicting the radiative bias, laying the foundation for advanced Earth system model evaluation and development.
Gaurav Govardhan, Sachin D. Ghude, Rajesh Kumar, Sumit Sharma, Preeti Gunwani, Chinmay Jena, Prafull Yadav, Shubhangi Ingle, Sreyashi Debnath, Pooja Pawar, Prodip Acharja, Rajmal Jat, Gayatry Kalita, Rupal Ambulkar, Santosh Kulkarni, Akshara Kaginalkar, Vijay K. Soni, Ravi S. Nanjundiah, and Madhavan Rajeevan
Geosci. Model Dev., 17, 2617–2640, https://doi.org/10.5194/gmd-17-2617-2024, https://doi.org/10.5194/gmd-17-2617-2024, 2024
Short summary
Short summary
A newly developed air quality forecasting framework, Decision Support System (DSS), for air quality management in Delhi, India, provides source attribution with numerous emission reduction scenarios besides forecasts. DSS shows that during post-monsoon and winter seasons, Delhi and its neighboring districts contribute to 30 %–40 % each to pollution in Delhi. On average, a 40 % reduction in the emissions in Delhi and the surrounding districts would result in a 24 % reduction in Delhi's pollution.
Simon Rosanka, Holger Tost, Rolf Sander, Patrick Jöckel, Astrid Kerkweg, and Domenico Taraborrelli
Geosci. Model Dev., 17, 2597–2615, https://doi.org/10.5194/gmd-17-2597-2024, https://doi.org/10.5194/gmd-17-2597-2024, 2024
Short summary
Short summary
The capabilities of the Modular Earth Submodel System (MESSy) are extended to account for non-equilibrium aqueous-phase chemistry in the representation of deliquescent aerosols. When applying the new development in a global simulation, we find that MESSy's bias in modelling routinely observed reduced inorganic aerosol mass concentrations, especially in the United States. Furthermore, the representation of fine-aerosol pH is particularly improved in the marine boundary layer.
Junyu Li, Yuxin Wang, Lilong Liu, Yibin Yao, Liangke Huang, and Feijuan Li
Geosci. Model Dev., 17, 2569–2581, https://doi.org/10.5194/gmd-17-2569-2024, https://doi.org/10.5194/gmd-17-2569-2024, 2024
Short summary
Short summary
In this study, we have developed a model (RF-PWV) to characterize precipitable water vapor (PWV) variation with altitude in the study area. RF-PWV can significantly reduce errors in vertical correction, enhance PWV fusion product accuracy, and provide insights into PWV vertical distribution, thereby contributing to climate research.
Rolf Sander
Geosci. Model Dev., 17, 2419–2425, https://doi.org/10.5194/gmd-17-2419-2024, https://doi.org/10.5194/gmd-17-2419-2024, 2024
Short summary
Short summary
The open-source software MEXPLORER 1.0.0 is presented here. The program can be used to analyze, reduce, and visualize complex chemical reaction mechanisms. The mathematics behind the tool is based on graph theory: chemical species are represented as vertices, and reactions as edges. MEXPLORER is a community model published under the GNU General Public License.
Hossain Mohammed Syedul Hoque, Kengo Sudo, Hitoshi Irie, Yanfeng He, and Md Firoz Khan
EGUsphere, https://doi.org/10.22541/essoar.169903618.82717612/v2, https://doi.org/10.22541/essoar.169903618.82717612/v2, 2024
Short summary
Short summary
Using multi-platform observations, we validated global formaldehyde (HCHO) simulations from a chemistry transport model. HCHO is a crucial intermediate of the chemical catalytic cycle that governs the ozone formation in the troposphere. The model was capable of replicating the observed spatiotemporal variability in HCHO. In a few cases, the model capability was limited. This is attributed to the uncertainties in the observations and the model parameters.
Leonardo Olivetti and Gabriele Messori
Geosci. Model Dev., 17, 2347–2358, https://doi.org/10.5194/gmd-17-2347-2024, https://doi.org/10.5194/gmd-17-2347-2024, 2024
Short summary
Short summary
In the last decades, weather forecasting up to 15 d into the future has been dominated by physics-based numerical models. Recently, deep learning models have challenged this paradigm. However, the latter models may struggle when forecasting weather extremes. In this article, we argue for deep learning models specifically designed to handle extreme events, and we propose a foundational framework to develop such models.
Stefan Rahimi, Lei Huang, Jesse Norris, Alex Hall, Naomi Goldenson, Will Krantz, Benjamin Bass, Chad Thackeray, Henry Lin, Di Chen, Eli Dennis, Ethan Collins, Zachary J. Lebo, Emily Slinskey, Sara Graves, Surabhi Biyani, Bowen Wang, Stephen Cropper, and the UCLA Center for Climate Science Team
Geosci. Model Dev., 17, 2265–2286, https://doi.org/10.5194/gmd-17-2265-2024, https://doi.org/10.5194/gmd-17-2265-2024, 2024
Short summary
Short summary
Here, we project future climate across the western United States through the end of the 21st century using a regional climate model, embedded within 16 latest-generation global climate models, to provide the community with a high-resolution physically based ensemble of climate data for use at local scales. Strengths and weaknesses of the data are frankly discussed as we overview the downscaled dataset.
Romain Pilon and Daniela I. V. Domeisen
Geosci. Model Dev., 17, 2247–2264, https://doi.org/10.5194/gmd-17-2247-2024, https://doi.org/10.5194/gmd-17-2247-2024, 2024
Short summary
Short summary
This paper introduces a new method for detecting atmospheric cloud bands to identify long convective cloud bands that extend from the tropics to the midlatitudes. The algorithm allows for easy use and enables researchers to study the life cycle and climatology of cloud bands and associated rainfall. This method provides insights into the large-scale processes involved in cloud band formation and their connections between different regions, as well as differences across ocean basins.
Cited articles
Ainsworth, E. A., Yendrek, C. R., Sitch, S., Collins, W. J., and Emberson, L. D.:
The Effects of Tropospheric Ozone on Net Primary Productivity and Implications for Climate Change, Annu. Rev. Plant Biol., 63, 637–661, https://doi.org/10.1146/annurev-arplant-042110-103829, 2012.
Anenberg, S. C., Horowitz, L. W., Tong, D. Q., and West, J. J.:
An estimate of the global burden of anthropogenic ozone and fine particulate matter on premature human mortality using atmospheric modeling, Environ. Health Persp., 118, 1189–1195, https://doi.org/10.1289/ehp.0901220, 2010.
Arneth, A., Niinemets, Ü., Pressley, S., Bäck, J., Hari, P., Karl, T., Noe, S., Prentice, I. C., Serça, D., Hickler, T., Wolf, A., and Smith, B.:
Process-based estimates of terrestrial ecosystem isoprene emissions: incorporating the effects of a direct CO2−isoprene interaction, Atmos. Chem. Phys., 7, 31–53, https://doi.org/10.5194/acp-7-31-2007, 2007.
Avnery, S., Mauzerall, D. L., Liu, J., and Horowitz, L. W.:
Global crop yield reductions due to surface ozone exposure: 1. Year 2000 crop production losses and economic damage, Atmos. Environ., 45, 2284–2296, https://doi.org/10.1016/j.atmosenv.2010.11.045, 2011.
Best, M. J., Pryor, M., Clark, D. B., Rooney, G. G., Essery, R. L. H., Ménard, C. B., Edwards, J. M., Hendry, M. A., Porson, A., Gedney, N., Mercado, L. M., Sitch, S., Blyth, E., Boucher, O., Cox, P. M., Grimmond, C. S. B., and Harding, R. J.:
The Joint UK Land Environment Simulator (JULES), model description – Part 1: Energy and water fluxes, Geosci. Model Dev., 4, 677–699, https://doi.org/10.5194/gmd-4-677-2011, 2011.
Bey, I., Jacob, D., Yantosca, R., Logan, J., Field, B., Fiore, A., Li, Q., Liu, H., Mickley, L., and Schultz, M.:
Global modeling of tropospheric chemistry with assimilated meteorology: Model description and evaluation, J. Geophys. Res.-Atmos., 106, 23073–23095, https://doi.org/10.1029/2001JD000807, 2001.
Blyth, E., Clark, D. B., Ellis, R., Huntingford, C., Los, S., Pryor, M., Best, M., and Sitch, S.:
A comprehensive set of benchmark tests for a land surface model of simultaneous fluxes of water and carbon at both the global and seasonal scale, Geosci. Model Dev., 4, 255–269, https://doi.org/10.5194/gmd-4-255-2011, 2011.
Clark, D. B., Mercado, L. M., Sitch, S., Jones, C. D., Gedney, N., Best, M. J., Pryor, M., Rooney, G. G., Essery, R. L. H., Blyth, E., Boucher, O., Harding, R. J., Huntingford, C., and Cox, P. M.:
The Joint UK Land Environment Simulator (JULES), model description – Part 2: Carbon fluxes and vegetation dynamics, Geosci. Model Dev., 4, 701–722, https://doi.org/10.5194/gmd-4-701-2011, 2011.
Clifton, O. E., Fiore, A. M., Munger, J. W., Malyshev, S., Horowitz, L. W., Shevliakova, E., Paulot, F., Murray, L. T., and Griffin, K. L.:
Interannual variability in ozone removal by a temperate deciduous forest, Geophys. Res. Lett., 44, 542–552, https://doi.org/10.1002/2016GL070923, 2017.
Collatz, G. J., Ball, J. T., Grivet, C., and Berry, J. A.:
Physiological and environmental regulation of stomatal conductance, photosynthesis and transpiration: a model that includes a laminar boundary layer, Agr. Forest Meteorol., 54, 107–136, https://doi.org/10.1016/0168-1923(91)90002-8, 1991.
Collatz, G., Ribas-Carbo, M., and Berry, J.:
Coupled Photosynthesis-Stomatal Conductance Model for Leaves of C4 Plants, Aust. J. Plant Physiol., 19, 519–538, 1992.
Cox, P. M., Huntingford, C., and Harding, R. J.:
A canopy conductance and photosynthesis model for use in a GCM land surface scheme, J. Hydrol., 212, 79–94, https://doi.org/10.1016/S0022-1694(98)00203-0, 1998.
De Kauwe, M. G., Kala, J., Lin, Y.-S., Pitman, A. J., Medlyn, B. E., Duursma, R. A., Abramowitz, G., Wang, Y.-P., and Miralles, D. G.:
A test of an optimal stomatal conductance scheme within the CABLE land surface model, Geosci. Model Dev., 8, 431–452, https://doi.org/10.5194/gmd-8-431-2015, 2015.
Dirmeyer, P. A., Gao, X., Zhao, M., Guo, Z., Oki, T., and Hanasaki, N.:
GSWP-2: Multimodel analysis and implications for our perception of the land surface, B. Am. Meteorol. Soc., 87, 1381–1397, https://doi.org/10.1175/BAMS-87-10-1381, 2006.
Ducker, J. A., Holmes, C. D., Keenan, T. F., Fares, S., Goldstein, A. H., Mammarella, I., Munger, J. W., and Schnell, J.:
Synthetic ozone deposition and stomatal uptake at flux tower sites, Biogeosciences, 15, 5395–5413, https://doi.org/10.5194/bg-15-5395-2018, 2018.
Emberson, L. D., Kitwiroon, N., Beevers, S., Büker, P., and Cinderby, S.:
Scorched Earth: how will changes in the strength of the vegetation sink to ozone deposition affect human health and ecosystems?, Atmos. Chem. Phys., 13, 6741–6755, https://doi.org/10.5194/acp-13-6741-2013, 2013.
Feng, Z., Büker, P., Pleijel, H., Emberson, L., Karlsson, P. E., and Uddling, J.:
A unifying explanation for variation in ozone sensitivity among woody plants, Glob. Change Biol., 24, 78–84, https://doi.org/10.1111/gcb.13824, 2018.
Franks, P. J. and Farquhar, G. D.:
A relationship between humidity response, growth form and photosynthetic operating point in C3 plants, Plant Cell Environ., 22, 1337–1349, https://doi.org/10.1046/j.1365-3040.1999.00494.x, 1999.
Franks, P. J., Adams, M. A., Amthor, J. S., Barbour, M. M., Berry, J. A., Ellsworth, D. S., Farquhar, G. D., Ghannoum, O., Lloyd, J., Mcdowell, N., Norby, R. J., Tissue, D. T., and Caemmerer, S.:
Sensitivity of plants to changing atmospheric CO2 concentration: from the geological past to the next century, New Phytol., 197, 1077–1094, https://doi.org/10.1111/nph.12104, 2013.
Gelaro, R., McCarty, W., Suárez, M. J., Todling, R., Molod, A., Takacs, L., Randles, C. A., Darmenov, A., Bosilovich, M. G., Reichle, R., Wargan, K., Coy, L., Cullather, R., Draper, C., Akella, S., Buchard, V., Conaty, A., da Silva, A. M., Gu, W., Kim, G.-K., Koster, R., Lucchesi, R., Merkova, D., Nielsen, J. E., Partyka, G., Pawson, S., Putman, W., Rienecker, M., Schubert, S. D., Sienkiewicz, M., and Zhao, B.:
The Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2), J. Climate, 30, 5419–5454, https://doi.org/10.1175/JCLI-D-16-0758.1, 2017.
Guenther, A. B., Jiang, X., Heald, C. L., Sakulyanontvittaya, T., Duhl, T., Emmons, L. K., and Wang, X.:
The Model of Emissions of Gases and Aerosols from Nature version 2.1 (MEGAN2.1): an extended and updated framework for modeling biogenic emissions, Geosci. Model Dev., 5, 1471–1492, https://doi.org/10.5194/gmd-5-1471-2012, 2012.
Hardacre, C., Wild, O., and Emberson, L.:
An evaluation of ozone dry deposition in global scale chemistry climate models, Atmos. Chem. Phys., 15, 6419–6436, https://doi.org/10.5194/acp-15-6419-2015, 2015.
Harper, A. B., Williams, K. E., McGuire, P. C., Duran Rojas, M. C., Hemming, D., Verhoef, A., Huntingford, C., Rowland, L., Marthews, T., Breder Eller, C., Mathison, C., Nobrega, R. L. B., Gedney, N., Vidale, P. L., Otu-Larbi, F., Pandey, D., Garrigues, S., Wright, A., Slevin, D., De Kauwe, M. G., Blyth, E., Ardö, J., Black, A., Bonal, D., Buchmann, N., Burban, B., Fuchs, K., de Grandcourt, A., Mammarella, I., Merbold, L., Montagnani, L., Nouvellon, Y., Restrepo-Coupe, N., and Wohlfahrt, G.:
Improvement of modeling plant responses to low soil moisture in JULESvn4.9 and evaluation against flux tower measurements, Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, 2021.
Hoesly, R. M., Smith, S. J., Feng, L., Klimont, Z., Janssens-Maenhout, G., Pitkanen, T., Seibert, J. J., Vu, L., Andres, R. J., Bolt, R. M., Bond, T. C., Dawidowski, L., Kholod, N., Kurokawa, J.-I., Li, M., Liu, L., Lu, Z., Moura, M. C. P., O'Rourke, P. R., and Zhang, Q.:
Historical (1750–2014) anthropogenic emissions of reactive gases and aerosols from the Community Emissions Data System (CEDS), Geosci. Model Dev., 11, 369–408, https://doi.org/10.5194/gmd-11-369-2018, 2018.
Huang, L., McDonald-Buller, E. C., McGaughey, G., Kimura, Y., and Allen, D. T.:
The impact of drought on ozone dry deposition over eastern Texas, Atmos. Environ., 127, 176–186, https://doi.org/10.1016/j.atmosenv.2015.12.022, 2016.
Huntingford, C., Oliver, R. J., Mercado, L. M., and Sitch, S.:
Technical note: A simple theoretical model framework to describe plant stomatal “sluggishness” in response to elevated ozone concentrations, Biogeosciences, 15, 5415–5422, https://doi.org/10.5194/bg-15-5415-2018, 2018.
Jacob, D. J. and Winner, D. A.:
Effect of climate change on air quality, Atmos. Environ., 43, 51–63, https://doi.org/10.1016/j.atmosenv.2008.09.051, 2009.
Jacobs, C.: Direct impact of atmospheric CO, enrichment on regional transpiration, PhD thesis, Wageningen Agricultural University, 1994.
Jarvis, P. G.:
Interpretation of Variations in Leaf Water Potential and Stomatal Conductance Found in Canopies in Field, Philos. T. Roy. Soc. B, 273, 593–610, https://doi.org/10.1098/rstb.1976.0035, 1976.
Kavassalis, S. C. and Murphy, J. G.:
Understanding ozone-meteorology correlations: A role for dry deposition, Geophys. Res. Lett., 44, 2922–2931, https://doi.org/10.1002/2016GL071791, 2017.
Keller, C. A., Long, M. S., Yantosca, R. M., Da Silva, A. M., Pawson, S., and Jacob, D. J.:
HEMCO v1.0: a versatile, ESMF-compliant component for calculating emissions in atmospheric models, Geosci. Model Dev., 7, 1409–1417, https://doi.org/10.5194/gmd-7-1409-2014, 2014.
Koster, R. D., Guo, Z., Yang, R., Dirmeyer, P. A., Mitchell, K., and Puma, M. J.:
On the Nature of Soil Moisture in Land Surface Models, J. Climate, 22, 4322–4335, https://doi.org/10.1175/2009JCLI2832.1, 2009.
Lei, Y., Yue, X., Liao, H., Gong, C., and Zhang, L.:
Implementation of Yale Interactive terrestrial Biosphere model v1.0 into GEOS-Chem v12.0.0: a tool for biosphere–chemistry interactions, Geosci. Model Dev., 13, 1137–1153, https://doi.org/10.5194/gmd-13-1137-2020, 2020.
Leuning, R.:
A critical appraisal of a combined stomatal-photosynthesis model for C3 plants, Plant Cell Environ., 18, 339–355, https://doi.org/10.1111/j.1365-3040.1995.tb00370.x, 1995.
Lombardozzi, D., Levis, S., Bonan, G., Hess, P. G., and Sparks, J. P.:
The Influence of Chronic Ozone Exposure on Global Carbon and Water Cycles, J. Climate, 28, 292–305, https://doi.org/10.1175/JCLI-D-14-00223.1, 2015.
Loreto, F. and Schnitzler, J.-P.:
Abiotic stresses and induced BVOCs, Trends Plant Sci., 15, 154–156, https://doi.org/10.1016/j.tplants.2009.12.006, 2010.
Loveland, T. R., Reed, B. C., Brown, J. F., Ohlen, D. O., Zhu, Z., Yang, L., and Merchant, J. W.: Development of a global land cover characteristics database and IGBP DISCover from 1 km AVHRR data, Int. J. Remote Sens., 21, 1303–1330, https://doi.org/10.1080/014311600210191, 2000.
Medlyn, B. E., Duursma, R. A., Eamus, D., Ellsworth, D. S., Prentice, I. C., Barton, C. V. M., Crous, K. Y., De Angelis, P., Freeman, M., and Wingate, L.:
Reconciling the optimal and empirical approaches to modelling stomatal conductance, Glob. Change Biol., 17, 2134–2144, https://doi.org/10.1111/j.1365-2486.2010.02375.x, 2011.
Mills G., Pleijel H., Malley C. S., Sinha B., Cooper O. R., Schultz M. G., Neufeld H. S., Simpson D., Sharps K., Feng Z., Gerosa G., Harmens H., Kobayashi K., Saxena P., Paoletti E., Sinha V., Xu X.:
Tropospheric Ozone Assessment Report: Present-day tropospheric ozone distribution and trends relevant to vegetation, Elementa: Science of the Anthropocene, 6, 47, https://doi.org/10.1525/elementa.302, 2018.
Pacifico, F., Harrison, S. P., Jones, C. D., Arneth, A., Sitch, S., Weedon, G. P., Barkley, M. P., Palmer, P. I., Serça, D., Potosnak, M., Fu, T.-M., Goldstein, A., Bai, J., and Schurgers, G.:
Evaluation of a photosynthesis-based biogenic isoprene emission scheme in JULES and simulation of isoprene emissions under present-day climate conditions, Atmos. Chem. Phys., 11, 4371–4389, https://doi.org/10.5194/acp-11-4371-2011, 2011.
Possell, M. and Hewitt, C. N.:
Isoprene emissions from plants are mediated by atmospheric CO2 concentrations, Glob. Change Biol., 17, 1595–1610, https://doi.org/10.1111/j.1365-2486.2010.02306.x, 2011.
Pound, R. J., Sherwen, T., Helmig, D., Carpenter, L. J., and Evans, M. J.:
Influences of oceanic ozone deposition on tropospheric photochemistry, Atmos. Chem. Phys., 20, 4227–4239, https://doi.org/10.5194/acp-20-4227-2020, 2020.
Powell, T. L., Galbraith, D. R., Christoffersen, B. O., Harper, A., Imbuzeiro, H. M. A., Rowland, L., Almeida, S., Brando, P. M., da Costa, A. C. L., Costa, M. H., Levine, N. M., Malhi, Y., Saleska, S. R., Sotta, E., Williams, M., Meir, P., and Moorcroft, P. R.:
Confronting model predictions of carbon fluxes with measurements of Amazon forests subjected to experimental drought, New Phytol., 200, 350–365, https://doi.org/10.1111/nph.12390, 2013.
Prather, M. J. and Ehhalt, D.:
Atmospheric Chemistry and Greenhouse Gases, in: Climate Change 2001: The Scientific Basis, edited by: Houghton, J. T., Ding, Y., and Griggs, D. J., Cambridge University Press, Cambridge, ISBN 521014956, 2001.
Raoult, N. M., Jupp, T. E., Cox, P. M., and Luke, C. M.:
Land-surface parameter optimisation using data assimilation techniques: the adJULES system V1.0, Geosci. Model Dev., 9, 2833–2852, https://doi.org/10.5194/gmd-9-2833-2016, 2016.
Ronan, A. C., Ducker, J. A., Schnell, J. L., and Holmes, C. D.:
Have improvements in ozone air quality reduced ozone uptake into plants?, Elementa: Science of the Anthropocene, 8, 2, https://doi.org/10.1525/elementa.399, 2020.
Sadiq, M., Tai, A. P. K., Lombardozzi, D., and Val Martin, M.:
Effects of ozone–vegetation coupling on surface ozone air quality via biogeochemical and meteorological feedbacks, Atmos. Chem. Phys., 17, 3055–3066, https://doi.org/10.5194/acp-17-3055-2017, 2017.
Sanderson, M. G., Jones, C. D., Collins, W. K., Johnson, C. E., and Derwent, R. G.:
Effect of Climate Change on Isoprene Emissions and Surface Ozone Levels, Geophys. Res. Lett., 30, 1936, https://doi.org/10.1029/2003GL017642, 2003.
Sanderson, M. G., Collins, W. J., Hemming, D. L., and Betts, R. A.:
Stomatal conductance changes due to increasing carbon dioxide levels: Projected impact on surface ozone levels, Tellus B, 59, 404–411, https://doi.org/10.1111/j.1600-0889.2007.00277.x, 2007.
Sellers, P. J., Randall, D. A., Collatz, G. J., Berry, J. A., Field, C. B., Dazlich, D. A., Zhang, C., Collelo, G. D., and Bounoua, L.:
A Revised Land Surface Parameterization (SiB2) for Atmospheric GCMs. Part I: Model Formulation, J. Climate, 9, 676–705, 1996.
Silva, S. J. and Heald, C. L.:
Investigating dry deposition of ozone to vegetation, J. Geophys. Res.-Atmos., 123, 559–573, https://doi.org/10.1002/2017JD027278, 2018.
Sitch, S., Cox, P. M., Collins, W. J., and Huntingford, C.:
Indirect radiative forcing of climate change through ozone effects on the land-carbon sink, Nature, 448, 791, https://doi.org/10.1038/nature06059, 2007.
Slevin, D., Tett, S. F. B., Exbrayat, J.-F., Bloom, A. A., and Williams, M.:
Global evaluation of gross primary productivity in the JULES land surface model v3.4.1, Geosci. Model Dev., 10, 2651–2670, https://doi.org/10.5194/gmd-10-2651-2017, 2017.
Stevenson, D. S., Dentener, F. J., Schultz, M. G., Ellingsen, K., van Noije, T. P. C., Wild, O., Zeng, G., Amann, M., Atherton, C. S., Bell, N., Bergmann, D. J., Bey, I., Butler, T., Cofala, J., Collins, W. J., Derwent, R. G., Doherty, R. M., Drevet, J., Eskes, H. J., Fiore, A. M., Gauss, M., Hauglustaine, D. A., Horowitz, L. W., Isaksen, I. S. A., Krol, M. C., Lamarque, J.-F., Lawrence, M. G., Montanaro, V., Müller, J.-F., Pitari, G., Prather, M. J., Pyle, J. A., Rast, S., Rodriguez, J. M., Sanderson, M. G., Savage, N. H., Shindell, D. T., Strahan, S. E., Sudo, K., and Szopa, S.:
Multimodel ensemble simulations of present-day and near-future tropospheric ozone, J. Geophys. Res., 111, D08301, https://doi.org/10.1029/2005JD006338, 2006.
Tai, A. P. K. and Val Martin, M.:
Impacts of ozone air pollution and temperature extremes on crop yields: Spatial variability, adaptation and implications for future food security, Atmos. Environ., 169, 11–21, https://doi.org/10.1016/j.atmosenv.2017.09.002, 2017.
Tai, A. P. K., Mickley, L. J., Heald, C. L., and Wu, S.:
Effect of CO2 inhibition on biogenic isoprene emission: Implications for air quality under 2000 to 2050 changes in climate, vegetation, and land use, Geophys. Res. Lett., 40, 3479–3483, https://doi.org/10.1002/grl.50650, 2013.
Tai, A. P. K., Martin, M. V., and Heald, C. L.:
Threat to future global food security from climate change and ozone air pollution, Nat. Clim. Change, 4, 817–821, https://doi.org/10.1038/nclimate2317, 2014.
Travis, K. R., Jacob, D. J., Fisher, J. A., Kim, P. S., Marais, E. A., Zhu, L., Yu, K., Miller, C. C., Yantosca, R. M., Sulprizio, M. P., Thompson, A. M., Wennberg, P. O., Crounse, J. D., St. Clair, J. M., Cohen, R. C., Laughner, J. L., Dibb, J. E., Hall, S. R., Ullmann, K., Wolfe, G. M., Pollack, I. B., Peischl, J., Neuman, J. A., and Zhou, X.:
Why do models overestimate surface ozone in the Southeast United States?, Atmos. Chem. Phys., 16, 13561–13577, https://doi.org/10.5194/acp-16-13561-2016, 2016.
Trugman, A. T., Medvigy, D., Mankin, J. S., and Anderegg, W. R. L.:
Soil Moisture Stress as a Major Driver of Carbon Cycle Uncertainty, Geophys. Res. Lett., 45, 6495–6503, https://doi.org/10.1029/2018GL078131, 2018.
Unger, N.:
Isoprene emission variability through the twentieth century, J. Geophys. Res.-Atmos., 118, 13,606-13,613, https://doi.org/10.1002/2013JD020978, 2013.
Verhoef, A. and Egea, G.:
Modeling plant transpiration under limited soil water: Comparison of different plant and soil hydraulic parameterizations and preliminary implications for their use in land surface models, Agr. Forest Meteorol., 191, 22–32, https://doi.org/10.1016/j.agrformet.2014.02.009, 2014.
Wang, L., Tai, A. P. K., Tam, C.-Y., Sadiq, M., Wang, P., and Cheung, K. K. W.:
Impacts of future land use and land cover change on mid-21st-century surface ozone air quality: distinguishing between the biogeophysical and biogeochemical effects, Atmos. Chem. Phys., 20, 11349–11369, https://doi.org/10.5194/acp-20-11349-2020, 2020.
Weng, H., Lin, J., Martin, R., Millet, D., Jaeglé, L., Ridley, D., Keller, C., Li, C., Du, M., Meng, J.:
Global high-resolution emissions of soil NOx, sea salt aerosols, and biogenic volatile organic compounds, Sci. Data 7, 148, https://doi.org/10.1038/s41597-020-0488-5, 2020.
Wesely, M. L.:
Parameterization of surface resistances to gaseous dry deposition in regional-scale numerical models, Atmos. Environ., 23, 1293–1304, https://doi.org/10.1016/0004-6981(89)90153-4, 1989.
Wild, O.:
Modelling the global tropospheric ozone budget: exploring the variability in current models, Atmos. Chem. Phys., 7, 2643–2660, https://doi.org/10.5194/acp-7-2643-2007, 2007.
Wong, A. Y. H., Geddes, J. A., Tai, A. P. K., and Silva, S. J.:
Importance of dry deposition parameterization choice in global simulations of surface ozone, Atmos. Chem. Phys., 19, 14365–14385, https://doi.org/10.5194/acp-19-14365-2019, 2019.
Yantosca, B., Sulprizio, M., Lundgren, L., kelvinhb, 22degrees, Ridley, D., Fritz, T., Eastham, S. D., tsherwen, Lin, H., Downs, W., Fisher, J., Thackray, C., michael-s-long, Holmes, C., Bindle, L., GanLuo, Zhuang, J., SpaceMouse, Lam, J., Murray, L., noelleselin, xin-chen-github, emily-ramnarine, gianga, kelaar, Zhu, L., Yao, F., Fite, C., and Song, S.: GEOS-Chem with Ecophysiology, Zenodo [code], https://doi.org/10.5281/zenodo.7017973, 2022.
Yuan, H., Dai, Y., Xiao, Z., Ji, D., and Shangguan, W.:
Reprocessing the MODIS Leaf Area Index products for land surface and climate modelling, Remote Sens. Environ., 115, 1171–1187, https://doi.org/10.1016/j.rse.2011.01.001, 2011.
Yue, X. and Unger, N.:
The Yale Interactive terrestrial Biosphere model version 1.0: description, evaluation and implementation into NASA GISS ModelE2, Geosci. Model Dev., 8, 2399–2417, https://doi.org/10.5194/gmd-8-2399-2015, 2015.
Zhang, L., Brook, J. R., and Vet, R.:
A revised parameterization for gaseous dry deposition in air-quality models, Atmos. Chem. Phys., 3, 2067–2082, https://doi.org/10.5194/acp-3-2067-2003, 2003.
Zhou, S. S., Tai, A. P. K., Sun, S., Sadiq, M., Heald, C. L., and Geddes, J. A.:
Coupling between surface ozone and leaf area index in a chemical transport model: strength of feedback and implications for ozone air quality and vegetation health, Atmos. Chem. Phys., 18, 14133–14148, https://doi.org/10.5194/acp-18-14133-2018, 2018.
Short summary
We developed a new component within an atmospheric chemistry model to better simulate plant ecophysiological processes relevant for ozone air quality. We showed that it reduces simulated biases in plant uptake of ozone in prior models. The new model enables us to explore how future climatic changes affect air quality via affecting plants, examine ozone–vegetation interactions and feedbacks, and evaluate the impacts of changing atmospheric chemistry and climate on vegetation productivity.
We developed a new component within an atmospheric chemistry model to better simulate plant...
