Articles | Volume 14, issue 3
https://doi.org/10.5194/gmd-14-1379-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-14-1379-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
11 Mar 2021
Model description paper |
| 11 Mar 2021
| 11 Mar 2021
Integrated modeling of canopy photosynthesis, fluorescence, and the transfer of energy, mass, and momentum in the soil–plant–atmosphere continuum (STEMMUS–SCOPE v1.0.0)
Yunfei Wang
College of Water Resources and Architectural Engineering, Northwest Agriculture and Forestry University, Yangling, China
Institute of Water Saving Agriculture in Arid Regions of China (IWSA), Northwest Agriculture and Forestry University, Yangling, China
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Water and Soil Conservation, Northwest Agriculture and Forestry University, Yangling, China
Yijian Zeng
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
Lianyu Yu
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
Peiqi Yang
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
Christiaan Van der Tol
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
Qiang Yu
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Water and Soil Conservation, Northwest Agriculture and Forestry University, Yangling, China
Xiaoliang Lü
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Water and Soil Conservation, Northwest Agriculture and Forestry University, Yangling, China
Huanjie Cai
CORRESPONDING AUTHOR
College of Water Resources and Architectural Engineering, Northwest Agriculture and Forestry University, Yangling, China
Institute of Water Saving Agriculture in Arid Regions of China (IWSA), Northwest Agriculture and Forestry University, Yangling, China
Zhongbo Su
CORRESPONDING AUTHOR
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
Key Laboratory of Subsurface Hydrology and Ecological Effects in Arid Region, Ministry of Education, School of Water and Environment, Chang'an University, Xi'an, China
Related authors
No articles found.
Paolo Nasta, Günter Blöschl, Heye R. Bogena, Steffen Zacharias, Roland Baatz, Gabriëlle De Lannoy, Karsten H. Jensen, Salvatore Manfreda, Laurent Pfister, Ana M. Tarquis, Ilja van Meerveld, Marc Voltz, Yijian Zeng, William Kustas, Xin Li, Harry Vereecken, and Nunzio Romano
EGUsphere, https://doi.org/10.5194/egusphere-2024-1678, https://doi.org/10.5194/egusphere-2024-1678, 2024
Short summary
Short summary
The Unsolved Problems in Hydrology (UPH) initiative has emphasized the need to establish networks of multi-decadal hydrological observatories to tackle catchment-scale challenges on a global scale. This opinion paper provocatively discusses two end members of possible future hydrological observatory (HO) networks for a given hypothesized community budget: a comprehensive set of moderately instrumented observatories or, alternatively, a small number of highly instrumented super-sites.
Yunfei Wang, Yijian Zeng, Zengjing Song, Danyang Yu, Qianqian Han, Enting Tang, Henk de Bruin, and Zhongbo Su
EGUsphere, https://doi.org/10.5194/egusphere-2024-1321, https://doi.org/10.5194/egusphere-2024-1321, 2024
Short summary
Short summary
Various methods were proposed to estimate irrigation water requirements (IWR). However, the simulated IWR exhibits large differences. This study evaluates six potential evapotranspiration (PET) methods and proposes a practical approach to estimate IWR. The radiation-based methods show promise in approximating daily PET accurately, and the STEMMUS-SCOPE model can reliably estimate IWR. This research enhances our understanding of different PET methods and their implications for water management.
Enting Tang, Yijian Zeng, Yunfei Wang, Zengjing Song, Danyang Yu, Hongyue Wu, Chenglong Qiao, Christiaan van der Tol, Lingtong Du, and Zhongbo Su
Biogeosciences, 21, 893–909, https://doi.org/10.5194/bg-21-893-2024, https://doi.org/10.5194/bg-21-893-2024, 2024
Short summary
Short summary
Our study shows that planting shrubs in a semiarid grassland reduced the soil moisture and increased plant water uptake and transpiration. Notably, the water used by the ecosystem exceeded the rainfall received during the growing seasons, indicating an imbalance in the water cycle. The findings demonstrate the effectiveness of the STEMMUS–SCOPE model as a tool to represent ecohydrological processes and highlight the need to consider energy and water budgets for future revegetation projects.
Gab Abramowitz, Anna Ukkola, Sanaa Hobeichi, Jon Cranko Page, Mathew Lipson, Martin De Kauwe, Sam Green, Claire Brenner, Jonathan Frame, Grey Nearing, Martyn Clark, Martin Best, Peter Anthoni, Gabriele Arduini, Souhail Boussetta, Silvia Caldararu, Kyeungwoo Cho, Matthias Cuntz, David Fairbairn, Craig Ferguson, Hyungjun Kim, Yeonjoo Kim, Jürgen Knauer, David Lawrence, Xiangzhong Luo, Sergey Malyshev, Tomoko Nitta, Jerome Ogee, Keith Oleson, Catherine Ottlé, Phillipe Peylin, Patricia de Rosnay, Heather Rumbold, Bob Su, Nicolas Vuichard, Anthony Walker, Xiaoni Wang-Faivre, Yunfei Wang, and Yijian Zeng
EGUsphere, https://doi.org/10.5194/egusphere-2023-3084, https://doi.org/10.5194/egusphere-2023-3084, 2024
Short summary
Short summary
This paper evaluates land models – computer based models that simulate ecosystem dynamics, the land carbon, water and energy cycles and the role of land in the climate system. It uses machine learning / AI approaches to show that despite the complexity of land models, they do not perform nearly as well as they could, given the amount of information they are provided with about the prediction problem.
Qianqian Han, Yijian Zeng, Lijie Zhang, Calimanut-Ionut Cira, Egor Prikaziuk, Ting Duan, Chao Wang, Brigitta Szabó, Salvatore Manfreda, Ruodan Zhuang, and Bob Su
Geosci. Model Dev., 16, 5825–5845, https://doi.org/10.5194/gmd-16-5825-2023, https://doi.org/10.5194/gmd-16-5825-2023, 2023
Short summary
Short summary
Using machine learning, we estimated global surface soil moisture (SSM) to aid in understanding water, energy, and carbon exchange. Ensemble models outperformed individual algorithms in predicting SSM under different climates. The best-performing ensemble included K-neighbours Regressor, Random Forest Regressor, and Extreme Gradient Boosting. This is important for hydrological and climatological applications such as water cycle monitoring, irrigation management, and crop yield prediction.
Tobias Karl David Weber, Lutz Weihermüller, Attila Nemes, Michel Bechtold, Aurore Degré, Efstathios Diamantopoulos, Simone Fatichi, Vilim Filipović, Surya Gupta, Tobias L. Hohenbrink, Daniel R. Hirmas, Conrad Jackisch, Quirijn de Jong van Lier, John Koestel, Peter Lehmann, Toby R. Marthews, Budiman Minasny, Holger Pagel, Martine van der Ploeg, Simon Fiil Svane, Brigitta Szabó, Harry Vereecken, Anne Verhoef, Michael Young, Yijian Zeng, Yonggen Zhang, and Sara Bonetti
EGUsphere, https://doi.org/10.5194/egusphere-2023-1860, https://doi.org/10.5194/egusphere-2023-1860, 2023
Short summary
Short summary
Pedotransfer functions (PTFs) are used to predicts parameters of models describing the hydraulic properties of soils. The appropriateness of these predictions critically rely on the nature of the datasets for training the PTFs as well the physical comprehensiveness of the models. This roadmap papers is addressed at PTF developers and users, and critically reflects the utility and future of PTFs. To this end, we present a manifesto aiming at a paradigm shift in PTFs research.
Kai-Gao Ouyang, Xiao-Wei Jiang, Gang Mei, Hong-Bin Yan, Ran Niu, Li Wan, and Yijian Zeng
Hydrol. Earth Syst. Sci., 27, 2579–2590, https://doi.org/10.5194/hess-27-2579-2023, https://doi.org/10.5194/hess-27-2579-2023, 2023
Short summary
Short summary
Our knowledge on sources and dynamics of rock moisture is limited. By using frequency domain reflectometry (FDR), we monitored rock moisture in a cave. The results of an explainable deep learning model reveal that the direct source of rock moisture responsible for weathering in the studied cave is vapour, not infiltrating precipitation. A physics-informed deep learning model, which uses variables controlling vapor condensation as model inputs, leads to accurate rock water content predictions.
Lianyu Yu, Yijian Zeng, Huanjie Cai, Mengna Li, Yuanyuan Zha, Jicai Zeng, Hui Qian, and Zhongbo Su
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2022-221, https://doi.org/10.5194/gmd-2022-221, 2023
Revised manuscript not accepted
Short summary
Short summary
We developed a coupled soil water-groundwater (SW-GW) model, which is verified as physically accurate and applicable in large-scale groundwater problems. The role of vadose zone processes, coupling approach, and spatiotemporal heterogeneity of SW-GW interactions were highlighted as essential to represent the SW-GW system. Given the relevant dataset, the developed SW-GW modeling framework has the potential to portray the processes "from bedrock to atmosphere" in a physically consistent manner.
Pei Zhang, Donghai Zheng, Rogier van der Velde, Jun Wen, Yaoming Ma, Yijian Zeng, Xin Wang, Zuoliang Wang, Jiali Chen, and Zhongbo Su
Earth Syst. Sci. Data, 14, 5513–5542, https://doi.org/10.5194/essd-14-5513-2022, https://doi.org/10.5194/essd-14-5513-2022, 2022
Short summary
Short summary
Soil moisture and soil temperature (SMST) are important state variables for quantifying the heat–water exchange between land and atmosphere. Yet, long-term, regional-scale in situ SMST measurements at multiple depths are scarce on the Tibetan Plateau (TP). The presented dataset would be valuable for the evaluation and improvement of long-term satellite- and model-based SMST products on the TP, enhancing the understanding of TP hydrometeorological processes and their response to climate change.
Hong Zhao, Yijian Zeng, Jan G. Hofste, Ting Duan, Jun Wen, and Zhongbo Su
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2022-333, https://doi.org/10.5194/hess-2022-333, 2022
Revised manuscript not accepted
Short summary
Short summary
This paper demonstrated the capability of our developed platform for simulating microwave emission and backscatter signals at multi-frequency. The results of associated investigations on impacts of vegetation water (VW) and temperature (T) imply the need to first disentangle the impact of T for the use of high-frequency signals as its variation is more due to dynamic T. Estimated vegetation optical depth is frequency-dependent, while its diurnal variation depends on that of VW despite frequency.
Alby Duarte Rocha, Stenka Vulova, Christiaan van der Tol, Michael Förster, and Birgit Kleinschmit
Hydrol. Earth Syst. Sci., 26, 1111–1129, https://doi.org/10.5194/hess-26-1111-2022, https://doi.org/10.5194/hess-26-1111-2022, 2022
Short summary
Short summary
Evapotranspiration (ET) is a sum of soil evaporation and plant transpiration. ET produces a cooling effect to mitigate heat waves in urban areas. Our method uses a physical model with remote sensing and meteorological data to predict hourly ET. Designed for uniform vegetation, it overestimated urban ET. To correct it, we create a factor using vegetation fraction that proved efficient for reducing bias and improving accuracy. This approach was tested on two Berlin sites and can be used to map ET.
P. E. K. Campbell, K. F. Huemmrich, E. M. Middleton, J. Alfieri, C. van der Tol, and C. S. R. Neigh
Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLVI-1-W1-2021, 1–8, https://doi.org/10.5194/isprs-archives-XLVI-1-W1-2021-1-2022, https://doi.org/10.5194/isprs-archives-XLVI-1-W1-2021-1-2022, 2022
Shaoning Lv, Clemens Simmer, Yijian Zeng, Jun Wen, Yuanyuan Guo, and Zhongbo Su
The Cryosphere Discuss., https://doi.org/10.5194/tc-2021-369, https://doi.org/10.5194/tc-2021-369, 2022
Preprint withdrawn
Short summary
Short summary
The freeze-thaw of the ground is an interesting topic to climatology, hydrology, and other earth sciences. The global freeze-thaw distribution is available by passive microwave remote sensing technique. However, the remote sensing technique indirectly detects freeze-thaw states by measuring the brightness temperature difference between frozen and unfrozen soil. Thus, we present different interprets of the brightness signals to the FT-state by using its sub-daily character.
Lianyu Yu, Yijian Zeng, and Zhongbo Su
Geosci. Model Dev., 14, 7345–7376, https://doi.org/10.5194/gmd-14-7345-2021, https://doi.org/10.5194/gmd-14-7345-2021, 2021
Short summary
Short summary
We developed an integrated soil–snow–atmosphere model (STEMMUS-UEB) dedicated to the physical description of snow and soil processes with various complexities. With STEMMUS-UEB, we demonstrated that the snowpack affects not only the soil surface moisture conditions (in the liquid and ice phase) and energy-related states (albedo, LE) but also the subsurface soil water and vapor transfer, which contributes to a better understanding of the hydrothermal implications of the snowpack in cold regions.
Wouter Dorigo, Irene Himmelbauer, Daniel Aberer, Lukas Schremmer, Ivana Petrakovic, Luca Zappa, Wolfgang Preimesberger, Angelika Xaver, Frank Annor, Jonas Ardö, Dennis Baldocchi, Marco Bitelli, Günter Blöschl, Heye Bogena, Luca Brocca, Jean-Christophe Calvet, J. Julio Camarero, Giorgio Capello, Minha Choi, Michael C. Cosh, Nick van de Giesen, Istvan Hajdu, Jaakko Ikonen, Karsten H. Jensen, Kasturi Devi Kanniah, Ileen de Kat, Gottfried Kirchengast, Pankaj Kumar Rai, Jenni Kyrouac, Kristine Larson, Suxia Liu, Alexander Loew, Mahta Moghaddam, José Martínez Fernández, Cristian Mattar Bader, Renato Morbidelli, Jan P. Musial, Elise Osenga, Michael A. Palecki, Thierry Pellarin, George P. Petropoulos, Isabella Pfeil, Jarrett Powers, Alan Robock, Christoph Rüdiger, Udo Rummel, Michael Strobel, Zhongbo Su, Ryan Sullivan, Torbern Tagesson, Andrej Varlagin, Mariette Vreugdenhil, Jeffrey Walker, Jun Wen, Fred Wenger, Jean Pierre Wigneron, Mel Woods, Kun Yang, Yijian Zeng, Xiang Zhang, Marek Zreda, Stephan Dietrich, Alexander Gruber, Peter van Oevelen, Wolfgang Wagner, Klaus Scipal, Matthias Drusch, and Roberto Sabia
Hydrol. Earth Syst. Sci., 25, 5749–5804, https://doi.org/10.5194/hess-25-5749-2021, https://doi.org/10.5194/hess-25-5749-2021, 2021
Short summary
Short summary
The International Soil Moisture Network (ISMN) is a community-based open-access data portal for soil water measurements taken at the ground and is accessible at https://ismn.earth. Over 1000 scientific publications and thousands of users have made use of the ISMN. The scope of this paper is to inform readers about the data and functionality of the ISMN and to provide a review of the scientific progress facilitated through the ISMN with the scope to shape future research and operations.
Mengna Li, Yijian Zeng, Maciek W. Lubczynski, Jean Roy, Lianyu Yu, Hui Qian, Zhenyu Li, Jie Chen, Lei Han, Han Zheng, Tom Veldkamp, Jeroen M. Schoorl, Harrie-Jan Hendricks Franssen, Kai Hou, Qiying Zhang, Panpan Xu, Fan Li, Kai Lu, Yulin Li, and Zhongbo Su
Earth Syst. Sci. Data, 13, 4727–4757, https://doi.org/10.5194/essd-13-4727-2021, https://doi.org/10.5194/essd-13-4727-2021, 2021
Short summary
Short summary
The Tibetan Plateau is the source of most of Asia's major rivers and has been called the Asian Water Tower. Due to its remoteness and the harsh environment, there is a lack of field survey data to investigate its hydrogeology. Borehole core lithology analysis, an altitude survey, soil thickness measurement, hydrogeological surveys, and hydrogeophysical surveys were conducted in the Maqu catchment within the Yellow River source region to improve a full–picture understanding of the water cycle.
Hong-Yu Xie, Xiao-Wei Jiang, Shu-Cong Tan, Li Wan, Xu-Sheng Wang, Si-Hai Liang, and Yijian Zeng
Hydrol. Earth Syst. Sci., 25, 4243–4257, https://doi.org/10.5194/hess-25-4243-2021, https://doi.org/10.5194/hess-25-4243-2021, 2021
Short summary
Short summary
Freezing-induced groundwater migration and water table decline are widely observed, but quantitative understanding of these processes is lacking. By considering wintertime atmospheric conditions and occurrence of lateral groundwater inflow, a model coupling soil water and groundwater reproduced field observations of soil temperature, soil water content, and groundwater level well. The model results led to a clear understanding of the balance of the water budget during the freezing–thawing cycle.
Peiqi Yang, Egor Prikaziuk, Wout Verhoef, and Christiaan van der Tol
Geosci. Model Dev., 14, 4697–4712, https://doi.org/10.5194/gmd-14-4697-2021, https://doi.org/10.5194/gmd-14-4697-2021, 2021
Short summary
Short summary
Since the first publication 12 years ago, the SCOPE model has been applied in remote sensing studies of solar-induced chlorophyll fluorescence (SIF), energy balance fluxes, gross primary productivity (GPP), and directional thermal signals. Here, we present a thoroughly revised version, SCOPE 2.0, which features a number of new elements.
Cunbo Han, Yaoming Ma, Binbin Wang, Lei Zhong, Weiqiang Ma, Xuelong Chen, and Zhongbo Su
Earth Syst. Sci. Data, 13, 3513–3524, https://doi.org/10.5194/essd-13-3513-2021, https://doi.org/10.5194/essd-13-3513-2021, 2021
Short summary
Short summary
Actual terrestrial evapotranspiration (ETa) is a key parameter controlling the land–atmosphere interaction processes and water cycle. However, the spatial distribution and temporal changes in ETa over the Tibetan Plateau (TP) remain very uncertain. Here we estimate the multiyear (2001–2018) monthly ETa and its spatial distribution on the TP by a combination of meteorological data and satellite products. Results have been validated at six eddy-covariance monitoring sites and show high accuracy.
Pei Zhang, Donghai Zheng, Rogier van der Velde, Jun Wen, Yijian Zeng, Xin Wang, Zuoliang Wang, Jiali Chen, and Zhongbo Su
Earth Syst. Sci. Data, 13, 3075–3102, https://doi.org/10.5194/essd-13-3075-2021, https://doi.org/10.5194/essd-13-3075-2021, 2021
Short summary
Short summary
This paper reports on the status of the Tibet-Obs and presents a 10-year (2009–2019) surface soil moisture (SM) dataset produced based on in situ measurements taken at a depth of 5 cm collected from the Tibet-Obs. This surface SM dataset includes the original 15 min in situ measurements collected by multiple SM monitoring sites of three networks (i.e. the Maqu, Naqu, and Ngari networks) and the spatially upscaled SM records produced for the Maqu and Shiquanhe networks.
Jan G. Hofste, Rogier van der Velde, Jun Wen, Xin Wang, Zuoliang Wang, Donghai Zheng, Christiaan van der Tol, and Zhongbo Su
Earth Syst. Sci. Data, 13, 2819–2856, https://doi.org/10.5194/essd-13-2819-2021, https://doi.org/10.5194/essd-13-2819-2021, 2021
Short summary
Short summary
The dataset reported in this paper concerns the measurement of microwave reflections from an alpine meadow over the Tibetan Plateau. These microwave reflections were measured continuously over 1 year. With it, variations in soil water content due to evaporation, precipitation, drainage, and soil freezing/thawing can be seen. A better understanding of the effects aforementioned processes have on microwave reflections may improve methods for estimating soil water content used by satellites.
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos P. M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugénie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, André Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Hölttä, Friso Holwerda, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Anders Lindroth, Pilar Llorens, Álvaro López-Bernal, Michael M. Loranty, Dietmar Lüttschwager, Cate Macinnis-Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez-Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, and Jordi Martínez-Vilalta
Earth Syst. Sci. Data, 13, 2607–2649, https://doi.org/10.5194/essd-13-2607-2021, https://doi.org/10.5194/essd-13-2607-2021, 2021
Short summary
Short summary
Transpiration is a key component of global water balance, but it is poorly constrained from available observations. We present SAPFLUXNET, the first global database of tree-level transpiration from sap flow measurements, containing 202 datasets and covering a wide range of ecological conditions. SAPFLUXNET and its accompanying R software package
sapfluxnetrwill facilitate new data syntheses on the ecological factors driving water use and drought responses of trees and forests.
María P. González-Dugo, Xuelong Chen, Ana Andreu, Elisabet Carpintero, Pedro J. Gómez-Giraldez, Arnaud Carrara, and Zhongbo Su
Hydrol. Earth Syst. Sci., 25, 755–768, https://doi.org/10.5194/hess-25-755-2021, https://doi.org/10.5194/hess-25-755-2021, 2021
Short summary
Short summary
Drought is a devastating natural hazard and difficult to define, detect and quantify. Global meteorological data and remote-sensing products present new opportunities to characterize drought in an objective way. In this paper, we applied the surface energy balance model SEBS to estimate monthly evapotranspiration (ET) from 2001 to 2018 over the dehesa area of the Iberian Peninsula. ET anomalies were used to identify the main drought events and analyze their impacts on dehesa vegetation.
Rogier van der Velde, Andreas Colliander, Michiel Pezij, Harm-Jan F. Benninga, Rajat Bindlish, Steven K. Chan, Thomas J. Jackson, Dimmie M. D. Hendriks, Denie C. M. Augustijn, and Zhongbo Su
Hydrol. Earth Syst. Sci., 25, 473–495, https://doi.org/10.5194/hess-25-473-2021, https://doi.org/10.5194/hess-25-473-2021, 2021
Short summary
Short summary
NASA’s SMAP satellite provides estimates of the amount of water in the soil. With measurements from a network of 20 monitoring stations, the accuracy of these estimates has been studied for a 4-year period. We found an agreement between satellite and in situ estimates in line with the mission requirements once the large mismatches associated with rapidly changing water contents, e.g. soil freezing and rainfall, are excluded.
Peiqi Yang, Christiaan van der Tol, Petya K. E. Campbell, and Elizabeth M. Middleton
Biogeosciences, 18, 441–465, https://doi.org/10.5194/bg-18-441-2021, https://doi.org/10.5194/bg-18-441-2021, 2021
Short summary
Short summary
Solar-induced chlorophyll fluorescence (SIF) has the potential to facilitate the monitoring of photosynthesis from space. This study presents a systematic analysis of the physical and physiological meaning of the relationship between fluorescence and photosynthesis at both leaf and canopy levels. We unravel the individual effects of incoming light, vegetation structure and leaf physiology and highlight their joint effects on the relationship between canopy fluorescence and photosynthesis.
Lianyu Yu, Simone Fatichi, Yijian Zeng, and Zhongbo Su
The Cryosphere, 14, 4653–4673, https://doi.org/10.5194/tc-14-4653-2020, https://doi.org/10.5194/tc-14-4653-2020, 2020
Short summary
Short summary
The role of soil water and heat transfer physics in portraying the function of a cold region ecosystem was investigated. We found that explicitly considering the frozen soil physics and coupled water and heat transfer is important in mimicking soil hydrothermal dynamics. The presence of soil ice can alter the vegetation leaf onset date and deep leakage. Different complexity in representing vadose zone physics does not considerably affect interannual energy, water, and carbon fluxes.
Bart Schilperoort, Miriam Coenders-Gerrits, César Jiménez Rodríguez, Christiaan van der Tol, Bas van de Wiel, and Hubert Savenije
Biogeosciences, 17, 6423–6439, https://doi.org/10.5194/bg-17-6423-2020, https://doi.org/10.5194/bg-17-6423-2020, 2020
Short summary
Short summary
With distributed temperature sensing (DTS) we measured a vertical temperature profile in a forest, from the forest floor to above the treetops. Using this temperature profile we can see which parts of the forest canopy are colder (thus more dense) or warmer (and less dense) and study the effect this has on the suppression of turbulent mixing. This can be used to improve our knowledge of the interaction between the atmosphere and forests and improve carbon dioxide flux measurements over forests.
Xu Yuan, Xiaolong Yu, and Zhongbo Su
Ocean Sci., 16, 1285–1296, https://doi.org/10.5194/os-16-1285-2020, https://doi.org/10.5194/os-16-1285-2020, 2020
Short summary
Short summary
This work investigates the variabilities of the barrier layer thickness (BLT) in the tropical Indian Ocean with the Simple Ocean Data Assimilation version 3 ocean reanalysis data. Our results show that the seasonal variation of the BLT is in relation to the changes of thermocline and sea surface salinity. In terms of the interannual timescale, BLT presents a clear seasonal phase locking dominated by different drivers during the Indian Dipole and El Niño–Southern Oscillation events.
Lianyu Yu, Yijian Zeng, and Zhongbo Su
Hydrol. Earth Syst. Sci., 24, 4813–4830, https://doi.org/10.5194/hess-24-4813-2020, https://doi.org/10.5194/hess-24-4813-2020, 2020
Short summary
Short summary
Soil mass and heat transfer processes were represented in three levels of model complexities to understand soil freeze–thaw mechanisms. Results indicate that coupled mass and heat transfer models considerably improved simulations of the soil hydrothermal regime. Vapor flow and thermal effects on water flow are the main mechanisms for the improvements. Given the explicit consideration of airflow, vapor flow and its effects on heat transfer were enhanced during the freeze–thaw transition period.
Javier Pacheco-Labrador, Tarek S. El-Madany, M. Pilar Martin, Rosario Gonzalez-Cascon, Arnaud Carrara, Gerardo Moreno, Oscar Perez-Priego, Tiana Hammer, Heiko Moossen, Kathrin Henkel, Olaf Kolle, David Martini, Vicente Burchard, Christiaan van der Tol, Karl Segl, Markus Reichstein, and Mirco Migliavacca
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-501, https://doi.org/10.5194/bg-2019-501, 2020
Revised manuscript not accepted
Short summary
Short summary
The new generation of sensors on-board satellites have the potential to provide richer information about the function of vegetation than before. This information, nowadays missing, is fundamental to improve our understanding and prediction of carbon and water cycles, and therefore to anticipate effects and responses to Climate Change. In this manuscript we propose a method to exploit the data provided by these satellites to successfully obtain this information key to face Climate Change.
X. Chen, Z. Su, and Y. Ma
Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLII-2-W13, 1729–1733, https://doi.org/10.5194/isprs-archives-XLII-2-W13-1729-2019, https://doi.org/10.5194/isprs-archives-XLII-2-W13-1729-2019, 2019
Debsunder Dutta, David S. Schimel, Ying Sun, Christiaan van der Tol, and Christian Frankenberg
Biogeosciences, 16, 77–103, https://doi.org/10.5194/bg-16-77-2019, https://doi.org/10.5194/bg-16-77-2019, 2019
Short summary
Short summary
Canopy structural and leaf photosynthesis parameterizations are often fixed over time in Earth system models and represent large sources of uncertainty in predictions of carbon and water fluxes. We develop a moving window nonlinear optimal parameter inversion framework using constraining flux and satellite reflectance observations. The results demonstrate the applicability of the approach for error reduction and capturing the seasonal variability of key ecosystem parameters.
César Cisneros Vaca, Christiaan van der Tol, and Chandra Prasad Ghimire
Hydrol. Earth Syst. Sci., 22, 3701–3719, https://doi.org/10.5194/hess-22-3701-2018, https://doi.org/10.5194/hess-22-3701-2018, 2018
Short summary
Short summary
The influence of long-term changes in canopy structure on rainfall interception loss was studied in a 55-year old forest. Interception loss was similar at the same site (38 %), when the forest was 29 years old. In the past, the forest was denser and had a higher storage capacity, but the evaporation rates were lower. We emphasize the importance of quantifying downward sensible heat flux and heat release from canopy biomass in tall forest in order to improve the quantification of evaporation.
Mehdi Rahmati, Lutz Weihermüller, Jan Vanderborght, Yakov A. Pachepsky, Lili Mao, Seyed Hamidreza Sadeghi, Niloofar Moosavi, Hossein Kheirfam, Carsten Montzka, Kris Van Looy, Brigitta Toth, Zeinab Hazbavi, Wafa Al Yamani, Ammar A. Albalasmeh, Ma'in Z. Alghzawi, Rafael Angulo-Jaramillo, Antônio Celso Dantas Antonino, George Arampatzis, Robson André Armindo, Hossein Asadi, Yazidhi Bamutaze, Jordi Batlle-Aguilar, Béatrice Béchet, Fabian Becker, Günter Blöschl, Klaus Bohne, Isabelle Braud, Clara Castellano, Artemi Cerdà, Maha Chalhoub, Rogerio Cichota, Milena Císlerová, Brent Clothier, Yves Coquet, Wim Cornelis, Corrado Corradini, Artur Paiva Coutinho, Muriel Bastista de Oliveira, José Ronaldo de Macedo, Matheus Fonseca Durães, Hojat Emami, Iraj Eskandari, Asghar Farajnia, Alessia Flammini, Nándor Fodor, Mamoun Gharaibeh, Mohamad Hossein Ghavimipanah, Teamrat A. Ghezzehei, Simone Giertz, Evangelos G. Hatzigiannakis, Rainer Horn, Juan José Jiménez, Diederik Jacques, Saskia Deborah Keesstra, Hamid Kelishadi, Mahboobeh Kiani-Harchegani, Mehdi Kouselou, Madan Kumar Jha, Laurent Lassabatere, Xiaoyan Li, Mark A. Liebig, Lubomír Lichner, María Victoria López, Deepesh Machiwal, Dirk Mallants, Micael Stolben Mallmann, Jean Dalmo de Oliveira Marques, Miles R. Marshall, Jan Mertens, Félicien Meunier, Mohammad Hossein Mohammadi, Binayak P. Mohanty, Mansonia Pulido-Moncada, Suzana Montenegro, Renato Morbidelli, David Moret-Fernández, Ali Akbar Moosavi, Mohammad Reza Mosaddeghi, Seyed Bahman Mousavi, Hasan Mozaffari, Kamal Nabiollahi, Mohammad Reza Neyshabouri, Marta Vasconcelos Ottoni, Theophilo Benedicto Ottoni Filho, Mohammad Reza Pahlavan-Rad, Andreas Panagopoulos, Stephan Peth, Pierre-Emmanuel Peyneau, Tommaso Picciafuoco, Jean Poesen, Manuel Pulido, Dalvan José Reinert, Sabine Reinsch, Meisam Rezaei, Francis Parry Roberts, David Robinson, Jesús Rodrigo-Comino, Otto Corrêa Rotunno Filho, Tadaomi Saito, Hideki Suganuma, Carla Saltalippi, Renáta Sándor, Brigitta Schütt, Manuel Seeger, Nasrollah Sepehrnia, Ehsan Sharifi Moghaddam, Manoj Shukla, Shiraki Shutaro, Ricardo Sorando, Ajayi Asishana Stanley, Peter Strauss, Zhongbo Su, Ruhollah Taghizadeh-Mehrjardi, Encarnación Taguas, Wenceslau Geraldes Teixeira, Ali Reza Vaezi, Mehdi Vafakhah, Tomas Vogel, Iris Vogeler, Jana Votrubova, Steffen Werner, Thierry Winarski, Deniz Yilmaz, Michael H. Young, Steffen Zacharias, Yijian Zeng, Ying Zhao, Hong Zhao, and Harry Vereecken
Earth Syst. Sci. Data, 10, 1237–1263, https://doi.org/10.5194/essd-10-1237-2018, https://doi.org/10.5194/essd-10-1237-2018, 2018
Short summary
Short summary
This paper presents and analyzes a global database of soil infiltration data, the SWIG database, for the first time. In total, 5023 infiltration curves were collected across all continents in the SWIG database. These data were either provided and quality checked by the scientists or they were digitized from published articles. We are convinced that the SWIG database will allow for a better parameterization of the infiltration process in land surface models and for testing infiltration models.
Hong Zhao, Yijian Zeng, Shaoning Lv, and Zhongbo Su
Earth Syst. Sci. Data, 10, 1031–1061, https://doi.org/10.5194/essd-10-1031-2018, https://doi.org/10.5194/essd-10-1031-2018, 2018
Short summary
Short summary
The Tibet-Obs soil properties dataset was compiled based on in situ and laboratory measurements of soil profiles across three climate zones on the Tibetan Plateau. The appropriate parameterization schemes of soil hydraulic and thermal properties were discussed for their applicability in land surface modeling. The uncertainties of existing soil datasets were evaluated. This paper contributes to land surface modeling and hydro-climatology communities for their studies of the third pole region.
Rahul Raj, Christiaan van der Tol, Nicholas Alexander Samuel Hamm, and Alfred Stein
Geosci. Model Dev., 11, 83–101, https://doi.org/10.5194/gmd-11-83-2018, https://doi.org/10.5194/gmd-11-83-2018, 2018
Fakhereh Alidoost, Alfred Stein, Zhongbo Su, and Ali Sharifi
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2017-93, https://doi.org/10.5194/hess-2017-93, 2017
Manuscript not accepted for further review
Short summary
Short summary
Weather stations are often sparse and systematic under/overestimation of a global weather forecast system leads to bias. Most of the available bias correction methods do not consider higher order moments of a probability distribution and they use same distributions families to estimate both marginal and multivariate distributions. We propose three new copula-based bias correction methods, which describe the dependence structure between air temperature and covariates.
Jian Peng, Alexander Loew, Xuelong Chen, Yaoming Ma, and Zhongbo Su
Hydrol. Earth Syst. Sci., 20, 3167–3182, https://doi.org/10.5194/hess-20-3167-2016, https://doi.org/10.5194/hess-20-3167-2016, 2016
Short summary
Short summary
The Tibetan Plateau plays a major role in regional and global climate. The knowledge of latent heat flux can help to better describe the complex interactions between land and atmosphere. The purpose of this paper is to provide a detailed cross-comparison of existing latent heat flux products over the TP. The results highlight the recently developed latent heat product – High Resolution Land Surface Parameters from Space (HOLAPS).
Lianyu Yu, Yijian Zeng, Zhongbo Su, Huanjie Cai, and Zhen Zheng
Hydrol. Earth Syst. Sci., 20, 975–990, https://doi.org/10.5194/hess-20-975-2016, https://doi.org/10.5194/hess-20-975-2016, 2016
Short summary
Short summary
The coupled water vapor and heat transport model using two different ET (ETdir, ETind) methods varied concerning the simulation of soil moisture and ET components, while agreed well for the simulation of soil temperature. Considering aerodynamic and surface resistance terms improved the ETdir method regarding simulating soil evaporation, especially after irrigation. The interactive effect of crop growth parameters with changing environment played an important role in estimating ET components.
X. Chen, Z. Su, Y. Ma, S. Liu, Q. Yu, and Z. Xu
Atmos. Chem. Phys., 14, 13097–13117, https://doi.org/10.5194/acp-14-13097-2014, https://doi.org/10.5194/acp-14-13097-2014, 2014
R. van der Velde, M. S. Salama, T. Pellarin, M. Ofwono, Y. Ma, and Z. Su
Hydrol. Earth Syst. Sci., 18, 1323–1337, https://doi.org/10.5194/hess-18-1323-2014, https://doi.org/10.5194/hess-18-1323-2014, 2014
Related subject area
Biogeosciences
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Quantifying the role of ozone-caused damage to vegetation in the Earth system: A new parameterization scheme for photosynthetic and stomatal responses
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
Exploring the Potential of History Matching for Land Surface Model Calibration
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
Using Deep Learning to integrate paleoclimate and global biogeochemistry over Phanerozoic time
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
EAT v0.9.6: a 1D testbed for physical-biogeochemical data assimilation in natural waters
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water, and nitrogen perturbations
A novel Eulerian model based on central moments to simulate age and reactivity continua interacting with mixing processes
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO, and NH3 emissions from enhanced rock weathering with croplands
Assimilation of Carbonyl Sulfide (COS) fluxes within the adjoint-based data assimilation system–Nanjing University Carbon Assimilation System (NUCAS v1.0)
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
Modeling boreal forest’s mineral soil and peat C stock dynamics with Yasso07 model coupled with updated moisture modifier
Modeling of non-structural carbohydrate dynamics by the spatially explicit individual-based dynamic global vegetation model SEIB-DGVM (SEIB-DGVM-NSC version 1.0)
MEDFATE 2.9.3: a trait-enabled model to simulate Mediterranean forest function and dynamics at regional scales
Modelling the role of livestock grazing in C and N cycling in grasslands with LPJmL5.0-grazing
Implementation of trait-based ozone plant sensitivity in the Yale Interactive terrestrial Biosphere model v1.0 to assess global vegetation damage
The Permafrost and Organic LayEr module for Forest Models (POLE-FM) 1.0
CompLaB v1.0: a scalable pore-scale model for flow, biogeochemistry, microbial metabolism, and biofilm dynamics
Validation of a new spatially explicit process-based model (HETEROFOR) to simulate structurally and compositionally complex forest stands in eastern North America
Global agricultural ammonia emissions simulated with the ORCHIDEE land surface model
ForamEcoGEnIE 2.0: incorporating symbiosis and spine traits into a trait-based global planktic foraminiferal model
FABM-NflexPD 2.0: testing an instantaneous acclimation approach for modeling the implications of phytoplankton eco-physiology for the carbon and nutrient cycles
Evaluating the vegetation–atmosphere coupling strength of ORCHIDEE land surface model (v7266)
Non-Redfieldian carbon model for the Baltic Sea (ERGOM version 1.2) – implementation and budget estimates
Implementation of a new crop phenology and irrigation scheme in the ISBA land surface model using SURFEX_v8.1
Simulating long-term responses of soil organic matter turnover to substrate stoichiometry by abstracting fast and small-scale microbial processes: the Soil Enzyme Steady Allocation Model (SESAM; v3.0)
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
Short summary
Short summary
We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
Short summary
Short summary
Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
Short summary
Short summary
Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
Short summary
Short summary
Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
Short summary
Short summary
We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
Short summary
Short summary
We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
Short summary
Short summary
By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
Short summary
Short summary
Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
Short summary
Short summary
Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
Short summary
Short summary
Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-6, https://doi.org/10.5194/gmd-2024-6, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
This study introduces a new scheme to simulate surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal response to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
Short summary
Short summary
By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
Short summary
Short summary
Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
EGUsphere, https://doi.org/10.5194/egusphere-2023-2996, https://doi.org/10.5194/egusphere-2023-2996, 2024
Short summary
Short summary
We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. Here we test a technique called “History matching” against more common approaches. This method adapts well to these models, helping better understand how they work and therefore how to make them more realistic.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
Short summary
Short summary
Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
Short summary
Short summary
To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Dongyu Zheng, Andrew Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-230, https://doi.org/10.5194/gmd-2023-230, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
This study uses a deep learning method to enhance the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model for more accurate predictions of climate shifts. The method may be critical in developing new fully-continuous methods that are able to translate over a moving continental surface in deep time with high-resolution at a reasonable computational expense.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
Short summary
Short summary
Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
Short summary
Short summary
Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-242, https://doi.org/10.5194/gmd-2023-242, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems as the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
Short summary
Short summary
This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-238, https://doi.org/10.5194/gmd-2023-238, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through “data assimilation”, which blends numerical models and observations. Here, we present EAT, a flexible and efficient testbed that allows any scientist to explore and further develop the state-of-the-art in data assimilation.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
Short summary
Short summary
Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
Short summary
Short summary
We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
Short summary
Short summary
Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
Short summary
Short summary
The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
Short summary
Short summary
We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
Short summary
Short summary
Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
Short summary
Short summary
We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
Short summary
Short summary
Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
Short summary
Short summary
In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
Short summary
Short summary
Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
EGUsphere, https://doi.org/10.5194/egusphere-2023-1955, https://doi.org/10.5194/egusphere-2023-1955, 2023
Short summary
Short summary
In this work, Nanjing University Carbon Assimilation System (NUCAS) was developed. Data assimilation experiments were conducted to demonstrate the robustness and to investigate the feasibility and applicability of NUCAS. The assimilation of COS significantly improved the model performance in gross primary productivity, sensible heat, latent heat and even soil moisture, demonstrating that COS can provide strong constraints on parameters relevant to water, energy and carbon processes.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
Short summary
Short summary
This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
Short summary
Short summary
Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Stefano Manzoni, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
EGUsphere, https://doi.org/10.5194/egusphere-2023-1523, https://doi.org/10.5194/egusphere-2023-1523, 2023
Short summary
Short summary
Improving representation of peatlands in Earth system models (ESMs) (e.g., in Yasso soil C model coupled with JSBACH model) is rare. We updated Yasso07 moisture dependency for applications on both the mineral soils and peatlands of boreal forest. Our moisture function improved the simulated peatland C stocks and CO2 dynamics. However, due to nature of the measurements used for Bayesian MCMC data assimilation, it contrasts with functions in other ESMs (see graphical abstract).
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
Short summary
Short summary
Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
Short summary
Short summary
Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
Jens Heinke, Susanne Rolinski, and Christoph Müller
Geosci. Model Dev., 16, 2455–2475, https://doi.org/10.5194/gmd-16-2455-2023, https://doi.org/10.5194/gmd-16-2455-2023, 2023
Short summary
Short summary
We develop a livestock module for the global vegetation model LPJmL5.0 to simulate the impact of grazing dairy cattle on carbon and nitrogen cycles in grasslands. A novelty of the approach is that it accounts for the effect of feed quality on feed uptake and feed utilization by animals. The portioning of dietary nitrogen into milk, feces, and urine shows very good agreement with estimates obtained from animal trials.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina M. Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander W. Cheesman, Yansen Xu, and Maria Carolina Duran Rojas
Geosci. Model Dev., 16, 2261–2276, https://doi.org/10.5194/gmd-16-2261-2023, https://doi.org/10.5194/gmd-16-2261-2023, 2023
Short summary
Short summary
Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained nor fully implemented in large-scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP, with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Winslow D. Hansen, Adrianna Foster, Benjamin Gaglioti, Rupert Seidl, and Werner Rammer
Geosci. Model Dev., 16, 2011–2036, https://doi.org/10.5194/gmd-16-2011-2023, https://doi.org/10.5194/gmd-16-2011-2023, 2023
Short summary
Short summary
Permafrost and the thick soil-surface organic layers that insulate permafrost are important controls of boreal forest dynamics and carbon cycling. However, both are rarely included in process-based vegetation models used to simulate future ecosystem trajectories. To address this challenge, we developed a computationally efficient permafrost and soil organic layer module that operates at fine spatial (1 ha) and temporal (daily) resolutions.
Heewon Jung, Hyun-Seob Song, and Christof Meile
Geosci. Model Dev., 16, 1683–1696, https://doi.org/10.5194/gmd-16-1683-2023, https://doi.org/10.5194/gmd-16-1683-2023, 2023
Short summary
Short summary
Microbial activity responsible for many chemical transformations depends on environmental conditions. These can vary locally, e.g., between poorly connected pores in porous media. We present a modeling framework that resolves such small spatial scales explicitly, accounts for feedback between transport and biogeochemical conditions, and can integrate state-of-the-art representations of microbes in a computationally efficient way, making it broadly applicable in science and engineering use cases.
Arthur Guignabert, Quentin Ponette, Frédéric André, Christian Messier, Philippe Nolet, and Mathieu Jonard
Geosci. Model Dev., 16, 1661–1682, https://doi.org/10.5194/gmd-16-1661-2023, https://doi.org/10.5194/gmd-16-1661-2023, 2023
Short summary
Short summary
Spatially explicit and process-based models are useful to test innovative forestry practices under changing and uncertain conditions. However, their larger use is often limited by the restricted range of species and stand structures they can reliably account for. We therefore calibrated and evaluated such a model, HETEROFOR, for 23 species across southern Québec. Our results showed that the model is robust and can predict accurately both individual tree growth and stand dynamics in this region.
Maureen Beaudor, Nicolas Vuichard, Juliette Lathière, Nikolaos Evangeliou, Martin Van Damme, Lieven Clarisse, and Didier Hauglustaine
Geosci. Model Dev., 16, 1053–1081, https://doi.org/10.5194/gmd-16-1053-2023, https://doi.org/10.5194/gmd-16-1053-2023, 2023
Short summary
Short summary
Ammonia mainly comes from the agricultural sector, and its volatilization relies on environmental variables. Our approach aims at benefiting from an Earth system model framework to estimate it. By doing so, we represent a consistent spatial distribution of the emissions' response to environmental changes.
We greatly improved the seasonal cycle of emissions compared with previous work. In addition, our model includes natural soil emissions (that are rarely represented in modeling approaches).
Rui Ying, Fanny M. Monteiro, Jamie D. Wilson, and Daniela N. Schmidt
Geosci. Model Dev., 16, 813–832, https://doi.org/10.5194/gmd-16-813-2023, https://doi.org/10.5194/gmd-16-813-2023, 2023
Short summary
Short summary
Planktic foraminifera are marine-calcifying zooplankton; their shells are widely used to measure past temperature and productivity. We developed ForamEcoGEnIE 2.0 to simulate the four subgroups of this organism. We found that the relative abundance distribution agrees with marine sediment core-top data and that carbon export and biomass are close to sediment trap and plankton net observations respectively. This model provides the opportunity to study foraminiferal ecology in any geological era.
Onur Kerimoglu, Markus Pahlow, Prima Anugerahanti, and Sherwood Lan Smith
Geosci. Model Dev., 16, 95–108, https://doi.org/10.5194/gmd-16-95-2023, https://doi.org/10.5194/gmd-16-95-2023, 2023
Short summary
Short summary
In classical models that track the changes in the elemental composition of phytoplankton, additional state variables are required for each element resolved. In this study, we show how the behavior of such an explicit model can be approximated using an
instantaneous acclimationapproach, in which the elemental composition of the phytoplankton is assumed to adjust to an optimal value instantaneously. Through rigorous tests, we evaluate the consistency of this scheme.
Yuan Zhang, Devaraju Narayanappa, Philippe Ciais, Wei Li, Daniel Goll, Nicolas Vuichard, Martin G. De Kauwe, Laurent Li, and Fabienne Maignan
Geosci. Model Dev., 15, 9111–9125, https://doi.org/10.5194/gmd-15-9111-2022, https://doi.org/10.5194/gmd-15-9111-2022, 2022
Short summary
Short summary
There are a few studies to examine if current models correctly represented the complex processes of transpiration. Here, we use a coefficient Ω, which indicates if transpiration is mainly controlled by vegetation processes or by turbulence, to evaluate the ORCHIDEE model. We found a good performance of ORCHIDEE, but due to compensation of biases in different processes, we also identified how different factors control Ω and where the model is wrong. Our method is generic to evaluate other models.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
Short summary
Short summary
Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Arsène Druel, Simon Munier, Anthony Mucia, Clément Albergel, and Jean-Christophe Calvet
Geosci. Model Dev., 15, 8453–8471, https://doi.org/10.5194/gmd-15-8453-2022, https://doi.org/10.5194/gmd-15-8453-2022, 2022
Short summary
Short summary
Crop phenology and irrigation is implemented into a land surface model able to work at a global scale. A case study is presented over Nebraska (USA). Simulations with and without the new scheme are compared to different satellite-based observations. The model is able to produce a realistic yearly irrigation water amount. The irrigation scheme improves the simulated leaf area index, gross primary productivity, evapotransipiration, and land surface temperature.
Thomas Wutzler, Lin Yu, Marion Schrumpf, and Sönke Zaehle
Geosci. Model Dev., 15, 8377–8393, https://doi.org/10.5194/gmd-15-8377-2022, https://doi.org/10.5194/gmd-15-8377-2022, 2022
Short summary
Short summary
Soil microbes process soil organic matter and affect carbon storage and plant nutrition at the ecosystem scale. We hypothesized that decadal dynamics is constrained by the ratios of elements in litter inputs, microbes, and matter and that microbial community optimizes growth. This allowed the SESAM model to descibe decadal-term carbon sequestration in soils and other biogeochemical processes explicitly accounting for microbial processes but without its problematic fine-scale parameterization.
Cited articles
Amato, M. and Ritchie, J. T.: Spatial distribution of roots and water uptake of maize (Zea mays L.) as affected by soil structure, Crop Sci., 42, 773–780, https://doi.org/10.2135/cropsci2002.7730, 2002.
Amenu, G. G. and Kumar, P.: A model for hydraulic redistribution incorporating coupled soil-root moisture transport, Hydrol. Earth Syst. Sci., 12, 55–74, https://doi.org/10.5194/hess-12-55-2008, 2008.
Aston, M. and Lawlor, D. W.: The relationship between transpiration, root water uptake, and leaf water potential, J. Exp. Bot., 30, 169-181, https://doi.org/10.1093/jxb/30.1.169, 1979.
Bayat, B., Van der Tol, C., and Verhoef, W.: Integrating satellite optical and thermal infrared observations for improving daily ecosystem functioning estimations during a drought episode, Remote Sens. Environ., 209, 375–394, https://doi.org/10.1016/j.rse.2018.02.027, 2018.
Bayat, B., Van der Tol, C., Yang, P., and Verhoef, W.: Extending the SCOPE model to combine optical reflectance and soil moisture observations for remote sensing of ecosystem functioning under water stress conditions, Remote Sens. Environ., 221, 286–301, https://doi.org/10.1016/j.rse.2018.11.021, 2019.
Beaudoin, N., Mary, B., Launay, M., and Brisson, N.: Conceptual basis, formalisations and parameterization of the STICS crop model, Editions Quae, Versailles Cedex, France, 2009.
Bingham, I. J. and Wu, L.: Simulation of wheat growth using the 3D root architecture model SPACSYS: validation and sensitivity analysis, Eur. J. Agron., 34, 181–189, https://doi.org/10.1016/j.eja.2011.01.003, 2011.
Caldwell, M. M., Dawson, T. E., and Richards, J. H.: Hydraulic lift: consequences of water efflux from the roots of plants, Oecologia, 113, 151–161, https://doi.org/10.1007/s004420050363, 1998.
Camargo, G. and Kemanian, A.: Six crop models differ in their simulation of water uptake, Agr. Forest Meteorol., 220, 116–129, https://doi.org/10.1016/j.agrformet.2016.01.013, 2016.
Chassot, A., Stamp, P., and Richner, W.: Root distribution and morphology of maize seedlings as affected by tillage and fertilizer placement, Plant Soil, 231, 123–135, https://doi.org/10.1023/A:1010335229111, 2001.
Collatz, G. J., Ball, J. T., Grivet, C., and Berry, J. A.: Physiological and environmental regulation of stomatal conductance, photosynthesis and transpiration, Agr. Forest Meteorol. 54, 107–136, https://doi.org/10.1016/0168-1923(91)90002-8, 1991.
Collatz, G. J., Ribas-Carbo, and M., Berry, J. A.: Coupled photosynthesis-stomatal conductance model for leaves of C4 plants, Aust. J. Plant Physiol., 19, 519–538, 1992.
Couvreur, V., Vanderborght, J., and Javaux, M.: A simple three-dimensional macroscopic root water uptake model based on the hydraulic architecture approach, Hydrol. Earth Syst. Sci., 16, 2957–2971, https://doi.org/10.5194/hess-16-2957-2012, 2012.
De Kauwe, M. G., Zhou, S.-X., Medlyn, B. E., Pitman, A. J., Wang, Y.-P., Duursma, R. A., and Prentice, I. C.: Do land surface models need to include differential plant species responses to drought? Examining model predictions across a mesic-xeric gradient in Europe, Biogeosciences, 12, 7503–7518, https://doi.org/10.5194/bg-12-7503-2015, 2015.
De Kauwe, M. G., Medlyn, B. E., Ukkola, A. M., Mu, M., Sabot, M. E., Pitman, A. J., Meir, P., Cernusak, L., Rifai, S. W., Choat, B., Tissue, D. T., Blackman, C. J., Li, X., Roderick, M., and Briggs, P. R.: Identifying areas at risk of drought-induced tree mortality across SouthEastern Australia, Glob. Change Biol., 26, 5716–5733, https://doi.org/10.1111/gcb.15215, 2020.
Deng, Z., Guan, H., Hutson, J., Forster, M. A., Wang, Y., and Simmons, C. T.: A vegetation focused soil-plant-atmospheric continuum model to study hydrodynamic soil-plant water relations, Water Resour. Res., 53, 4965–4983, https://doi.org/10.1002/2017WR020467, 2017.
Elfving, D. C., Kaufmann, M. R., and Hall, A. E.: Interpreting leaf water potential measurements with a model of the soil-plant-atmosphere continuum, Physiol. Plant., 27, 161–168, https://doi.org/10.1111/j.1399-3054.1972.tb03594.x, 1972.
Eller, C. B., Rowland, L., Mencuccini, M., Rosas, T., Williams, K., Harper, A., Medlyn, B., Wagner, Y., Klein, T., Teodoro, G., Oliveira, R., Matos, I., Rosado, B. H. P., Fuchs, K., Wohlfahrt, G., Montagnani, L., Meir, P., Sitch, S., and Cox, P.: Stomatal optimization based on xylem hydraulics (SOX) improves land surface model simulation of vegetation responses to climate, New Phytol., 226, 1622–1637, https://doi.org/10.1111/nph.16419, 2020.
Espeleta, J., West, J., and Donovan, L.: Species-specific patterns of hydraulic lift in co-occurring adult trees and grasses in a sandhill community, Oecologia, 138, 341–349, https://doi.org/10.1007/s00442-004-1539-x, 2004.
Fan, X., Hu, H., Huang, G., Huang, F., Li, Y., and Palta, J.: Soil inoculation with Burkholderia sp. LD-11 has positive effect on water-use efficiency in inbred lines of maize, Plant Soil, 390, 337–349, https://doi.org/10.1007/s11104-015-2410-z, 2015.
Farquhar, G. D., von Caemmerer, S., and Berry, J. A.: A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species, Planta, 149, 78–90, https://doi.org/10.1007/bf00386231, 1980.
Fu, C., Wang, G., Goulden, M. L., Scott, R. L., Bible, K., and G. Cardon, Z.: Combined measurement and modeling of the hydrological impact of hydraulic redistribution using CLM4.5 at eight AmeriFlux sites, Hydrol. Earth Syst. Sci., 20, 2001–2018, https://doi.org/10.5194/hess-20-2001-2016, 2016.
Guo, Y.: Simulation of water transport in the soil-plant-atmosphere system, Iowa State University, USA, https://doi.org/10.31274/rtd-180813-9473, 1992.
Jarvis, N. J.: Simple physics-based models of compensatory plant water uptake: concepts and eco-hydrological consequences, Hydrol. Earth Syst. Sci., 15, 3431–3446, https://doi.org/10.5194/hess-15-3431-2011, 2011.
Jones, J. W., Hoogenboom, G., Porter, C. H., Boote, K. J., Batchelor, W. D., Hunt, L., Wilkens, P. W., Singh, U., Gijsman, A. J., and Ritchie, J. T.: The DSSAT cropping system model, Eur. J. Agron., 18, 235–265, https://doi.org/10.1016/s1161-0301(02)00107-7, 2003.
Keating, B. A., Carberry, P. S., Hammer, G. L., Probert, M. E., Robertson, M. J., Holzworth, D., Huth, N. I., Hargreaves, J. N., Meinke, H., and Hochman, Z.: An overview of APSIM, a model designed for farming systems simulation, Eur. J. Agron., 18, 267–288, https://doi.org/10.1016/s1161-0301(02)00108-9, 2003.
Kennedy, D., Swenson, S., Oleson, K. W., Lawrence, D. M., Fisher, R. A., da Costa, A., and Gentine, P.: Implementing plant hydraulics in the community land model, version 5, J. Adv. Model. Earth Sy., 11, 485–513, https://doi.org/10.1029/2018MS001500, 2019.
Klepper, B., Rickman, R. W., and Taylor, H. M.: Farm management and the function of field crop root systems, Agric. Water Manage., 7, 115–141, https://doi.org/10.1016/0378-3774(83)90078-1, 1983.
Krinner, G., N. Viovy, de Noblet-Ducoudre, N., Ogee, J., Polcher, J., Friedlingstein, P., Ciais, P., Sitch, S., and Prentice. I. C.: A dynamic global vegetation model for studies of the coupled atmosphere-biosphere system, Global Biogeochem. Cy., 19, GB1015, https://doi.org/10.1029/2003GB002199, 2005.
Lawrence, D., Fisher, R., Koven, C., Oleson, K., Swenson, S., and Vertenstein, M.: Technical Description of version 5.0 of the Community LandModel (CLM), 2020.
Leitner, D., Klepsch, S., Bodner, G., and Schnepf, A.: A dynamic root system growth model based on L-Systems, Plant Soil, 332, 177–192, https://doi.org/10.1007/s11104-010-0284-7, 2010.
Mackay, D. S., Savoy, P. R., Grossiord, C., Tai, X., Oleban, J., Wang, D., McDowell, N., Adams, H., Sperry, J. S.: Conifers depend on established roots during drought: results from a coupled model of carbon allocation and hydraulics, New Phytol., 225, 679–692, https://doi.org/10.1111/nph.16043, 2019.
Martineau, E., Domec, J.-C., Bosc, A., Denoroy, P., Fandino, V. r.A., Lavres Jr., J., and Jordan-Meille, L.: The effects of potassium nutrition on water use in field-grown maize (Zea mays L.), Environ. Exp. Bot., 134, 62–71, https://doi.org/10.1016/j.envexpbot.2016.11.004, 2017.
Medlyn, B. E., Kauwe, M. G. D., and Duursma, R. A.: New developments in the effort to model ecosystems under water stress, New Phytol., 212, 5–7, https://doi.org/10.1111/nph.14082, 2016.
Mcdowell, N. G., Brodribb, T. J., and Nardini, A.: Hydraulics in the 21st century, New Phytol., 224, 537–542, https://doi.org/10.1111/nph.16151, 2019.
Mohammed, G. H., Colombo, R., Middleton, E. M., Rascher, U., Van der Tol, C., Nedbal, L., Goulas Y., Perez-Priego, O., Damm A., Meroni M., Joiner J., Cogliati S., Verhoef W., Malenovsky Z., Gastellu-Etchegorry J., Miller, J., Guanter, L., Moreno, J., Berry, J., Frankenberg, C., Zarco-Tejada, P. J.: Remote sensing of solar-induced chlorophyll fluorescence (SIF) in vegetation: 50 years of progress, Remote Sens. Environ., 231, 111177, https://doi.org/10.1016/j.rse.2019.04.030, 2019.
Ning, P., Li, S., White, P. J., and Li, C.: Maize varieties released in different eras have similar root length density distributions in the soil, which are negatively correlated with local concentrations of soil mineral nitrogen, PLOS ONE, 10, e0121892, https://doi.org/10.1371/journal.pone.0121892, 2015.
Niu, G., Fang, Y., Chang, L., Jin, J., Yuan, H., and Zeng, X.: Enhancing the Noah-MP ecosystem response to droughts with an explicit representation of plant water storage supplied by dynamic root water uptake, J. Adv. Model. Earth Syst., 12, e2020MS002062, https://doi.org/10.1029/2020MS002062, 2020.
O'Toole, J. C. and Cruz, R. T.: Response of leaf water potential, stomatal resistance, and leaf rolling to water stress, Plant Physiol., 65, 428–432, https://doi.org/10.1104/pp.65.3.428, 1980.
Oikeh, S., Kling, J., Horst, W., Chude, V., and Carsky, R.: Growth and distribution of maize roots under nitrogen fertilization in plinthite soil, Field Crop. Res., 62, 1–13, https://doi.org/10.1016/s0378-4290(98)00169-5, 1999.
Peng, Y., Yu, P., Zhang, Y., Sun, G., Ning, P., Li, X., and Li, C.: Temporal and spatial dynamics in root length density of field-grown maize and NPK in the soil profile, Field Crop. Res., 131, 9–16, https://doi.org/10.1016/j.fcr.2012.03.003, 2012.
Qin, R., Stamp, P., and Richner, W.: Impact of tillage on maize rooting in a Cambisol and Luvisol in Switzerland, Soil Till. Res., 85, 50–61, https://doi.org/10.1016/j.still.2004.12.003, 2006.
Reichstein, M., Falge, E., Baldocchi, D., Papale, D., Aubinet, M., Berbigier, P., Bernhofer, C., Buchmann, N., Gilmanov, T., and Granier, A.: On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm, Glob. Change Biol., 11, 1424–1439, https://doi.org/10.1111/j.1365-2486.2005.001002.x, 2005.
Reid, J. B. and Huck, M. G.: Diurnal variation of crop hydraulic resistance: a new analysis, Agron. J., 82, 827–834. https://doi.org/10.1016/0378-3774(90)90029-X, 1990.
Richards, J. H. and Caldwell, M. M.: Hydraulic lift: substantial nocturnal water transport between soil layers by Artemisia tridentata roots, Oecologia, 73, 486–489, https://doi.org/10.1007/bf00379405, 1987.
Robertson, M., Fukai, S., Hammer, G., and Ludlow, M.: Modelling root growth of grain sorghum using the CERES approach, Field Crop. Res., 33, 113–130, https://doi.org/10.1016/0378-4290(93)90097-7, 1993.
Ryel, R., Caldwell, M., Yoder, C., Or, D., and Leffler, A.: Hydraulic redistribution in a stand of Artemisia tridentata: evaluation of benefits to transpiration assessed with a simulation model, Oecologia, 130, 173–184, https://doi.org/10.1007/s004420100794, 2002.
Schroder, J., Groenwold, J., and Zaharieva, T.: Soil mineral nitrogen availability to young maize plants as related to root length density distribution and fertilizer application method, NJAS-Wagen, J. Life Sci., 44, 209–225, 1996.
Seneviratne, S. I., Corti, T., Davin, E. L., Hirschi, M., Jaeger, E. B., Lehner, I., Orlowsky, B., and Teuling, A. J.: Investigating soil moisture-climate interactions in a changing climate: a review, Earth-Sci. Rev., 99, 125–161, https://doi.org/10.1016/j.earscirev.2010.02.004, 2010.
Shan, N., Ju, W., Migliavacca, M., Martini, D., Guanter, L., and Chen, J. M., Goulas, Y., and Zhang, Y.: Modeling canopy conductance and transpiration from solar-induced chlorophyll fluorescence, Agr. Forest Meteorol., 268, 189–201, https://doi.org/10.1016/j.agrformet.2019.01.031, 2019.
Stöckle, C. O., Donatelli, M., and Nelson, R.: CropSyst, a cropping systems simulation model, Eur. J. Agron., 18, 289–307, https://doi.org/10.1016/s1161-0301(02)00109-0, 2003.
Sulis, M., Couvreur, V., Keune, J., Cai, G., Trebs, I., Junk, J. , Junk, J., Shrestha, P., Simmer, C., Kollet, S. J., Vereecken, H., Vanderborght, J.: Incorporating a root water uptake model based on the hydraulic architecture approach in terrestrial systems simulations, Agr. Forest Meteorol., 269270, 28–45, https://doi.org/10.1016/j.agrformet.2019.01.034, 2019.
Sun, Y., Fu, R., Dickinson, R., Joiner, J., Frankenberg, C., Gu, L., Xia, Y., and Fernando, N.: Drought onset mechanisms revealed by satellite solar-induced chlorophyll fluorescence: insights from two contrasting extreme events, J. Geophys. Res.-Biogeo., 120, 2427–2440, https://doi.org/10.1002/2015JG003150, 2016.
Supit, I., Hooijer, A., and Van Diepen, C.: System description of the WOFOST 6.0 crop simulation model implemented in CGMS, vol. 1: Theory and Algorithms, Joint Research Centre, Commission of the European Communities, 146, EUR 15956, 1994.
Van Dam, J. C.: Field-Scale Water Flow and Solute Transport. SWAP ModelConcepts, Parameter Estimation and Case Studies, Wageningen University, Wageningen, the Netherlands, 167 pp., 2000.
van der Tol, C., Verhoef, W., Timmermans, J., Verhoef, A., and Su, Z.: An integrated model of soil-canopy spectral radiances, photosynthesis, fluorescence, temperature and energy balance, Biogeosciences, 6, 3109–3129, https://doi.org/10.5194/bg-6-3109-2009, 2009.
Van der Tol, C., Berry, J., Campbell, P., Rascher, U.: Models of fluorescence and photosynthesis for interpreting measurements of solar-induced chlorophyll fluorescence, J. Geophys. Res.-Biogeo., 119, 2312–2327, https://doi.org/10.1002/2014JG002713, 2014.
Van Genuchten, M. T.: A closed-form equation for predicting the hydraulic conductivity of unsaturated soils, Soil Sci. Soc. Am. J., 44, 892–898, https://doi.org/10.2136/sssaj1980.03615995004400050002x, 1980.
Wang, E. and Smith, C. J.: Modelling the growth and water uptake function of plant root systems: a review, Aust. J. Agr. Res., 55, 501–523, https://doi.org/10.1071/ar03201, 2004.
Wang, Y., Cai, H. J., Zeng, Y. J., Su, Z., and Yu, L. Y.: Data underlying the research on Seasonal and interannual variation in evapotranspiration, energy flux, and Bowen ratio over a dry semi-humid cropland in Northwest China, 4TU, Centre for Research Data, Dataset, https://doi.org/10.4121/uuid:aa0ed483-701e-4ba0-b7b0-674695f5f7a7, 2019.
Wang, Y., Cai, H. J., Yu, L. Y., Peng, X. B., Xu, J. T., and Wang, X. W.: Evapotranspiration partitioning and crop coefficient of maize in dry semi-humid climate regime, Agric. Water Manag., 236, 106164, https://doi.org/10.1016/j.agwat.2020.106164, [preprint], 2020a.
Wang, Y., Zeng, Y. J., Yu, L. Y., Yang, P., Van der Tol, C., Su, Z., and Cai, H. J.: Integrated Modeling of Photosynthesis and Transfer of Energy, Mass and Momentum (SCOPE_STEMMUS v1.0), Zenodo, https://doi.org/10.5281/zenodo.3839092, 2020b.
Wiesler, F. and Horst, W.: Root growth and nitrate utilization of maize cultivars under field conditions, Plant Soil, 163, 267–277, https://doi.org/10.1007/bf00007976, 1994.
Williams, J., Jones, C., Kiniry, J., and Spanel, D. A.: The EPIC crop growth model, T. ASAE, 32, 497–511, https://doi.org/10.13031/2013.31032, 1989.
Williams, J. R., Gerik, T., Francis, L., Greiner, J., Magre, M., Meinardus, A., Steglich, E., and Taylor, R.: EPIC – Environmental Policy Integrated Climate Model, UsersManual version 0810, Blackland Research and Extension Center, Texas A&M AgriLife, Temple, TX, 2014.
Williams, M., Rastetter, E. B., Fernandes, D. N., Goulden, M. L., Wofsy, S. C., Shaver G. R., Melillo J. M., Munger, J. W., Fan, S. M., and Nadelhoffer, K. J.: Modelling the soil-plant-atmosphere continuum in a Quercus-Acer stand at Harvard Forest: the regulation of stomatal conductance by light, nitrogen and soil/plant hydraulic properties, Plant Cell Environ., 19, 911–927, https://doi.org/10.1111/j.1365-3040.1996.tb00456.x, 1996.
Wu, L., McGechan, M., Watson, C., and Baddeley, J.: Developing existing plant root system architecture models to meet future agricultural challenges, Adv. Agron., 85, 85004–85001, https://doi.org/10.1016/s0065-2113(04)85004-1, 2005.
Xu, L. and Baldocchi, D. D.: Seasonal trends in photosynthetic parameters and stomatal conductance of blue oak (Quercus douglasii) under prolonged summer drought and high temperature, Tree Physiol., 23, 865–877, https://doi.org/10.1093/treephys/23.13.865, 2003.
Xu, X., Medvigy, D., Powers, J. S., Becknell, J. M., and Guan, K.: Diversity in plant hydraulic traits explains seasonal and inter-annual variations of vegetation dynamics in seasonally dry tropical forests, New Phytol., 212, 80–95, https://doi.org/10.1111/nph.14009, 2016.
Yu, L., Zeng, Y., Su, Z., Cai, H., and Zheng, Z.: The effect of different evapotranspiration methods on portraying soil water dynamics and ET partitioning in a semi-arid environment in Northwest China, Hydrol. Earth Syst. Sci., 20, 975–990, https://doi.org/10.5194/hess-20-975-2016, 2016.
Yu, L., Zeng, Y., Wen, J., and Su, Z.: Liquid-Vapor-Air Flow in the Frozen Soil, J. Geophys. Res.-Atmos., 123, 7393–7415, https://doi.org/10.1029/2018jd028502, 2018.
Zeng, Y. and Su, Z.: STEMMUS: Simultaneous Transfer of Engery, Mass and Momentum in Unsaturated Soil, University of Twente, Faculty of Geo-Information and Earth Observation (ITC), Enschede, 2013.
Zeng, Y., Su, Z., Wan, L., and Wen, J.: A simulation analysis of the advective effect on evaporation using a two-phase heat and mass flow model, Water Resour. Res., 47, W10529, https://doi.org/10.1029/2011wr010701, 2011a.
Zeng, Y., Su, Z., Wan, L., and Wen, J.: Numerical analysis of air-water-heat flow in unsaturated soil: Is it necessary to consider airflow in land surface models?, J. Geophys. Res.-Atmos., 116, D20107, https://doi.org/10.1029/2011jd015835, 2011b.
Zhang, Y., Guanter, L., Joiner, J., Song, L., and Guan, K.: Spatially-explicit monitoring of crop photosynthetic capacity through space-based chlorophyll fluorescence data, Remote Sens. Environ., 210, 362–374, https://doi.org/10.1016/j.rse.2018.03.031, 2018.
Zhang, Z., Zhang, Y. G., Porcar-Castell, A., Joiner, J., Guanter, L., Yang, X., Migliavacca, M., Ju, W., Sun, Z., Chen, S., Martini, D., Zhang, Q., Li, Z., Cleverly, J., Wang, H., and Goulas, Y.: Reduction of structural impacts and distinction of photosynthetic pathways in a global estimation of GPP from space-borne solar-induced chlorophyll fluorescence, Remote Sens. Environ., 240, 111722, https://doi.org/10.1016/j.rse.2020.111722, 2020.
Zheng, Z. and Wang, G.: Modelling the dynamic root water uptake and its hydrological impact at the Reserva Jaru site in Amazonia, J. Geophys. Res.-Biogeo., 112, G04012, https://doi.org/10.1029/2007jg000413, 2007.
Zhou, S., Duursma, R. A., Medlyn, B. E., Kelly, J. W., and Prentice, I. C.: How should we model plant responses to drought? An analysis of stomatal and non-stomatal responses to water stress, Agric. For. Meteorol., 182, 204–214, https://doi.org/10.1016/j.agrformet.2013.05.009, 2013.
Zhou, S., Yu, B., Huang, Y., and Wang, G.: The effect of vapor pressure deficit on water use efficiency at the subdaily time scale, Geophys. Res. Lett., 41, 5005–5013, https://doi.org/10.1002/2014GL060741, 2014.
Zhou, S., Yu, B., Zhang, Y., Huang, Y., and Wang, G.: Partitioning evapotranspiration based on the concept of underlying water use efficiency, Water Resour. Res., 52, 1160–1175, https://doi.org/10.1002/2015wr017766, 2016.
Zhu, S., Chen, H., Zhang, X., Wei, N., Shangguan, W., Yuan, H., Zhang, S., Wang, L., Zhou, L., and Dai, Y.: Incorporating root hydraulic redistribution and compensatory water uptake in the Common Land Model: Effects on site level and global land modelling, J. Geophys. Res.-Atmos., 122, 7308–7322, https://doi.org/10.1002/2016jd025744, 2017.
Zhuang, J., Nakayama, K., Yu, G.-R., and Urushisaki, T.: Estimation of root water uptake of maize: an ecophysiological perspective, Field Crop. Res., 69, 201–213, https://doi.org/10.1016/s0378-4290(00)00142-8, 2001a.
Zhuang, J., Yu, G., and Nakayama, K.: Scaling of root length density of maize in the field profile, Plant Soil, 235, 135–142, https://doi.org/10.1023/A:1011972019617, 2001b.
Short summary
This study integrates photosynthesis and transfer of energy, mass, and momentum in the soil–plant–atmosphere continuum system, via a simplified 1D root growth model. The results indicated that the simulation of land surface fluxes was significantly improved by considering the root water uptake, especially when vegetation was experiencing severe water stress. This finding highlights the importance of enhanced soil heat and moisture transfer in simulating ecosystem functioning.
This study integrates photosynthesis and transfer of energy, mass, and momentum in the...
