Articles | Volume 14, issue 3
https://doi.org/10.5194/gmd-14-1379-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-14-1379-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
11 Mar 2021
Model description paper |
| 11 Mar 2021
| 11 Mar 2021
Integrated modeling of canopy photosynthesis, fluorescence, and the transfer of energy, mass, and momentum in the soil–plant–atmosphere continuum (STEMMUS–SCOPE v1.0.0)
Yunfei Wang
College of Water Resources and Architectural Engineering, Northwest Agriculture and Forestry University, Yangling, China
Institute of Water Saving Agriculture in Arid Regions of China (IWSA), Northwest Agriculture and Forestry University, Yangling, China
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Water and Soil Conservation, Northwest Agriculture and Forestry University, Yangling, China
Yijian Zeng
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
Lianyu Yu
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
Peiqi Yang
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
Christiaan Van der Tol
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
Qiang Yu
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Water and Soil Conservation, Northwest Agriculture and Forestry University, Yangling, China
Xiaoliang Lü
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Water and Soil Conservation, Northwest Agriculture and Forestry University, Yangling, China
Huanjie Cai
CORRESPONDING AUTHOR
College of Water Resources and Architectural Engineering, Northwest Agriculture and Forestry University, Yangling, China
Institute of Water Saving Agriculture in Arid Regions of China (IWSA), Northwest Agriculture and Forestry University, Yangling, China
Zhongbo Su
CORRESPONDING AUTHOR
Faculty of Geo-Information Science and Earth Observation, University of Twente, Enschede, the Netherlands
Key Laboratory of Subsurface Hydrology and Ecological Effects in Arid Region, Ministry of Education, School of Water and Environment, Chang'an University, Xi'an, China
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Hydrol. Earth Syst. Sci., 28, 3391–3433, https://doi.org/10.5194/hess-28-3391-2024, https://doi.org/10.5194/hess-28-3391-2024, 2024
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Shaoning Lv, Clemens Simmer, Yijian Zeng, Jun Wen, Yuanyuan Guo, and Zhongbo Su
The Cryosphere Discuss., https://doi.org/10.5194/tc-2021-369, https://doi.org/10.5194/tc-2021-369, 2022
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Lianyu Yu, Yijian Zeng, and Zhongbo Su
Geosci. Model Dev., 14, 7345–7376, https://doi.org/10.5194/gmd-14-7345-2021, https://doi.org/10.5194/gmd-14-7345-2021, 2021
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We developed an integrated soil–snow–atmosphere model (STEMMUS-UEB) dedicated to the physical description of snow and soil processes with various complexities. With STEMMUS-UEB, we demonstrated that the snowpack affects not only the soil surface moisture conditions (in the liquid and ice phase) and energy-related states (albedo, LE) but also the subsurface soil water and vapor transfer, which contributes to a better understanding of the hydrothermal implications of the snowpack in cold regions.
Wouter Dorigo, Irene Himmelbauer, Daniel Aberer, Lukas Schremmer, Ivana Petrakovic, Luca Zappa, Wolfgang Preimesberger, Angelika Xaver, Frank Annor, Jonas Ardö, Dennis Baldocchi, Marco Bitelli, Günter Blöschl, Heye Bogena, Luca Brocca, Jean-Christophe Calvet, J. Julio Camarero, Giorgio Capello, Minha Choi, Michael C. Cosh, Nick van de Giesen, Istvan Hajdu, Jaakko Ikonen, Karsten H. Jensen, Kasturi Devi Kanniah, Ileen de Kat, Gottfried Kirchengast, Pankaj Kumar Rai, Jenni Kyrouac, Kristine Larson, Suxia Liu, Alexander Loew, Mahta Moghaddam, José Martínez Fernández, Cristian Mattar Bader, Renato Morbidelli, Jan P. Musial, Elise Osenga, Michael A. Palecki, Thierry Pellarin, George P. Petropoulos, Isabella Pfeil, Jarrett Powers, Alan Robock, Christoph Rüdiger, Udo Rummel, Michael Strobel, Zhongbo Su, Ryan Sullivan, Torbern Tagesson, Andrej Varlagin, Mariette Vreugdenhil, Jeffrey Walker, Jun Wen, Fred Wenger, Jean Pierre Wigneron, Mel Woods, Kun Yang, Yijian Zeng, Xiang Zhang, Marek Zreda, Stephan Dietrich, Alexander Gruber, Peter van Oevelen, Wolfgang Wagner, Klaus Scipal, Matthias Drusch, and Roberto Sabia
Hydrol. Earth Syst. Sci., 25, 5749–5804, https://doi.org/10.5194/hess-25-5749-2021, https://doi.org/10.5194/hess-25-5749-2021, 2021
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The International Soil Moisture Network (ISMN) is a community-based open-access data portal for soil water measurements taken at the ground and is accessible at https://ismn.earth. Over 1000 scientific publications and thousands of users have made use of the ISMN. The scope of this paper is to inform readers about the data and functionality of the ISMN and to provide a review of the scientific progress facilitated through the ISMN with the scope to shape future research and operations.
Mengna Li, Yijian Zeng, Maciek W. Lubczynski, Jean Roy, Lianyu Yu, Hui Qian, Zhenyu Li, Jie Chen, Lei Han, Han Zheng, Tom Veldkamp, Jeroen M. Schoorl, Harrie-Jan Hendricks Franssen, Kai Hou, Qiying Zhang, Panpan Xu, Fan Li, Kai Lu, Yulin Li, and Zhongbo Su
Earth Syst. Sci. Data, 13, 4727–4757, https://doi.org/10.5194/essd-13-4727-2021, https://doi.org/10.5194/essd-13-4727-2021, 2021
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The Tibetan Plateau is the source of most of Asia's major rivers and has been called the Asian Water Tower. Due to its remoteness and the harsh environment, there is a lack of field survey data to investigate its hydrogeology. Borehole core lithology analysis, an altitude survey, soil thickness measurement, hydrogeological surveys, and hydrogeophysical surveys were conducted in the Maqu catchment within the Yellow River source region to improve a full–picture understanding of the water cycle.
Hong-Yu Xie, Xiao-Wei Jiang, Shu-Cong Tan, Li Wan, Xu-Sheng Wang, Si-Hai Liang, and Yijian Zeng
Hydrol. Earth Syst. Sci., 25, 4243–4257, https://doi.org/10.5194/hess-25-4243-2021, https://doi.org/10.5194/hess-25-4243-2021, 2021
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Freezing-induced groundwater migration and water table decline are widely observed, but quantitative understanding of these processes is lacking. By considering wintertime atmospheric conditions and occurrence of lateral groundwater inflow, a model coupling soil water and groundwater reproduced field observations of soil temperature, soil water content, and groundwater level well. The model results led to a clear understanding of the balance of the water budget during the freezing–thawing cycle.
Peiqi Yang, Egor Prikaziuk, Wout Verhoef, and Christiaan van der Tol
Geosci. Model Dev., 14, 4697–4712, https://doi.org/10.5194/gmd-14-4697-2021, https://doi.org/10.5194/gmd-14-4697-2021, 2021
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Since the first publication 12 years ago, the SCOPE model has been applied in remote sensing studies of solar-induced chlorophyll fluorescence (SIF), energy balance fluxes, gross primary productivity (GPP), and directional thermal signals. Here, we present a thoroughly revised version, SCOPE 2.0, which features a number of new elements.
Cunbo Han, Yaoming Ma, Binbin Wang, Lei Zhong, Weiqiang Ma, Xuelong Chen, and Zhongbo Su
Earth Syst. Sci. Data, 13, 3513–3524, https://doi.org/10.5194/essd-13-3513-2021, https://doi.org/10.5194/essd-13-3513-2021, 2021
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Actual terrestrial evapotranspiration (ETa) is a key parameter controlling the land–atmosphere interaction processes and water cycle. However, the spatial distribution and temporal changes in ETa over the Tibetan Plateau (TP) remain very uncertain. Here we estimate the multiyear (2001–2018) monthly ETa and its spatial distribution on the TP by a combination of meteorological data and satellite products. Results have been validated at six eddy-covariance monitoring sites and show high accuracy.
Pei Zhang, Donghai Zheng, Rogier van der Velde, Jun Wen, Yijian Zeng, Xin Wang, Zuoliang Wang, Jiali Chen, and Zhongbo Su
Earth Syst. Sci. Data, 13, 3075–3102, https://doi.org/10.5194/essd-13-3075-2021, https://doi.org/10.5194/essd-13-3075-2021, 2021
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This paper reports on the status of the Tibet-Obs and presents a 10-year (2009–2019) surface soil moisture (SM) dataset produced based on in situ measurements taken at a depth of 5 cm collected from the Tibet-Obs. This surface SM dataset includes the original 15 min in situ measurements collected by multiple SM monitoring sites of three networks (i.e. the Maqu, Naqu, and Ngari networks) and the spatially upscaled SM records produced for the Maqu and Shiquanhe networks.
Jan G. Hofste, Rogier van der Velde, Jun Wen, Xin Wang, Zuoliang Wang, Donghai Zheng, Christiaan van der Tol, and Zhongbo Su
Earth Syst. Sci. Data, 13, 2819–2856, https://doi.org/10.5194/essd-13-2819-2021, https://doi.org/10.5194/essd-13-2819-2021, 2021
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The dataset reported in this paper concerns the measurement of microwave reflections from an alpine meadow over the Tibetan Plateau. These microwave reflections were measured continuously over 1 year. With it, variations in soil water content due to evaporation, precipitation, drainage, and soil freezing/thawing can be seen. A better understanding of the effects aforementioned processes have on microwave reflections may improve methods for estimating soil water content used by satellites.
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos P. M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugénie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, André Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Hölttä, Friso Holwerda, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Anders Lindroth, Pilar Llorens, Álvaro López-Bernal, Michael M. Loranty, Dietmar Lüttschwager, Cate Macinnis-Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez-Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, and Jordi Martínez-Vilalta
Earth Syst. Sci. Data, 13, 2607–2649, https://doi.org/10.5194/essd-13-2607-2021, https://doi.org/10.5194/essd-13-2607-2021, 2021
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Transpiration is a key component of global water balance, but it is poorly constrained from available observations. We present SAPFLUXNET, the first global database of tree-level transpiration from sap flow measurements, containing 202 datasets and covering a wide range of ecological conditions. SAPFLUXNET and its accompanying R software package
sapfluxnetrwill facilitate new data syntheses on the ecological factors driving water use and drought responses of trees and forests.
María P. González-Dugo, Xuelong Chen, Ana Andreu, Elisabet Carpintero, Pedro J. Gómez-Giraldez, Arnaud Carrara, and Zhongbo Su
Hydrol. Earth Syst. Sci., 25, 755–768, https://doi.org/10.5194/hess-25-755-2021, https://doi.org/10.5194/hess-25-755-2021, 2021
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Drought is a devastating natural hazard and difficult to define, detect and quantify. Global meteorological data and remote-sensing products present new opportunities to characterize drought in an objective way. In this paper, we applied the surface energy balance model SEBS to estimate monthly evapotranspiration (ET) from 2001 to 2018 over the dehesa area of the Iberian Peninsula. ET anomalies were used to identify the main drought events and analyze their impacts on dehesa vegetation.
Rogier van der Velde, Andreas Colliander, Michiel Pezij, Harm-Jan F. Benninga, Rajat Bindlish, Steven K. Chan, Thomas J. Jackson, Dimmie M. D. Hendriks, Denie C. M. Augustijn, and Zhongbo Su
Hydrol. Earth Syst. Sci., 25, 473–495, https://doi.org/10.5194/hess-25-473-2021, https://doi.org/10.5194/hess-25-473-2021, 2021
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NASA’s SMAP satellite provides estimates of the amount of water in the soil. With measurements from a network of 20 monitoring stations, the accuracy of these estimates has been studied for a 4-year period. We found an agreement between satellite and in situ estimates in line with the mission requirements once the large mismatches associated with rapidly changing water contents, e.g. soil freezing and rainfall, are excluded.
Peiqi Yang, Christiaan van der Tol, Petya K. E. Campbell, and Elizabeth M. Middleton
Biogeosciences, 18, 441–465, https://doi.org/10.5194/bg-18-441-2021, https://doi.org/10.5194/bg-18-441-2021, 2021
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Solar-induced chlorophyll fluorescence (SIF) has the potential to facilitate the monitoring of photosynthesis from space. This study presents a systematic analysis of the physical and physiological meaning of the relationship between fluorescence and photosynthesis at both leaf and canopy levels. We unravel the individual effects of incoming light, vegetation structure and leaf physiology and highlight their joint effects on the relationship between canopy fluorescence and photosynthesis.
Lianyu Yu, Simone Fatichi, Yijian Zeng, and Zhongbo Su
The Cryosphere, 14, 4653–4673, https://doi.org/10.5194/tc-14-4653-2020, https://doi.org/10.5194/tc-14-4653-2020, 2020
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The role of soil water and heat transfer physics in portraying the function of a cold region ecosystem was investigated. We found that explicitly considering the frozen soil physics and coupled water and heat transfer is important in mimicking soil hydrothermal dynamics. The presence of soil ice can alter the vegetation leaf onset date and deep leakage. Different complexity in representing vadose zone physics does not considerably affect interannual energy, water, and carbon fluxes.
Bart Schilperoort, Miriam Coenders-Gerrits, César Jiménez Rodríguez, Christiaan van der Tol, Bas van de Wiel, and Hubert Savenije
Biogeosciences, 17, 6423–6439, https://doi.org/10.5194/bg-17-6423-2020, https://doi.org/10.5194/bg-17-6423-2020, 2020
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With distributed temperature sensing (DTS) we measured a vertical temperature profile in a forest, from the forest floor to above the treetops. Using this temperature profile we can see which parts of the forest canopy are colder (thus more dense) or warmer (and less dense) and study the effect this has on the suppression of turbulent mixing. This can be used to improve our knowledge of the interaction between the atmosphere and forests and improve carbon dioxide flux measurements over forests.
Xu Yuan, Xiaolong Yu, and Zhongbo Su
Ocean Sci., 16, 1285–1296, https://doi.org/10.5194/os-16-1285-2020, https://doi.org/10.5194/os-16-1285-2020, 2020
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This work investigates the variabilities of the barrier layer thickness (BLT) in the tropical Indian Ocean with the Simple Ocean Data Assimilation version 3 ocean reanalysis data. Our results show that the seasonal variation of the BLT is in relation to the changes of thermocline and sea surface salinity. In terms of the interannual timescale, BLT presents a clear seasonal phase locking dominated by different drivers during the Indian Dipole and El Niño–Southern Oscillation events.
Lianyu Yu, Yijian Zeng, and Zhongbo Su
Hydrol. Earth Syst. Sci., 24, 4813–4830, https://doi.org/10.5194/hess-24-4813-2020, https://doi.org/10.5194/hess-24-4813-2020, 2020
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Soil mass and heat transfer processes were represented in three levels of model complexities to understand soil freeze–thaw mechanisms. Results indicate that coupled mass and heat transfer models considerably improved simulations of the soil hydrothermal regime. Vapor flow and thermal effects on water flow are the main mechanisms for the improvements. Given the explicit consideration of airflow, vapor flow and its effects on heat transfer were enhanced during the freeze–thaw transition period.
Javier Pacheco-Labrador, Tarek S. El-Madany, M. Pilar Martin, Rosario Gonzalez-Cascon, Arnaud Carrara, Gerardo Moreno, Oscar Perez-Priego, Tiana Hammer, Heiko Moossen, Kathrin Henkel, Olaf Kolle, David Martini, Vicente Burchard, Christiaan van der Tol, Karl Segl, Markus Reichstein, and Mirco Migliavacca
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-501, https://doi.org/10.5194/bg-2019-501, 2020
Revised manuscript not accepted
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The new generation of sensors on-board satellites have the potential to provide richer information about the function of vegetation than before. This information, nowadays missing, is fundamental to improve our understanding and prediction of carbon and water cycles, and therefore to anticipate effects and responses to Climate Change. In this manuscript we propose a method to exploit the data provided by these satellites to successfully obtain this information key to face Climate Change.
X. Chen, Z. Su, and Y. Ma
Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLII-2-W13, 1729–1733, https://doi.org/10.5194/isprs-archives-XLII-2-W13-1729-2019, https://doi.org/10.5194/isprs-archives-XLII-2-W13-1729-2019, 2019
Debsunder Dutta, David S. Schimel, Ying Sun, Christiaan van der Tol, and Christian Frankenberg
Biogeosciences, 16, 77–103, https://doi.org/10.5194/bg-16-77-2019, https://doi.org/10.5194/bg-16-77-2019, 2019
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Canopy structural and leaf photosynthesis parameterizations are often fixed over time in Earth system models and represent large sources of uncertainty in predictions of carbon and water fluxes. We develop a moving window nonlinear optimal parameter inversion framework using constraining flux and satellite reflectance observations. The results demonstrate the applicability of the approach for error reduction and capturing the seasonal variability of key ecosystem parameters.
César Cisneros Vaca, Christiaan van der Tol, and Chandra Prasad Ghimire
Hydrol. Earth Syst. Sci., 22, 3701–3719, https://doi.org/10.5194/hess-22-3701-2018, https://doi.org/10.5194/hess-22-3701-2018, 2018
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The influence of long-term changes in canopy structure on rainfall interception loss was studied in a 55-year old forest. Interception loss was similar at the same site (38 %), when the forest was 29 years old. In the past, the forest was denser and had a higher storage capacity, but the evaporation rates were lower. We emphasize the importance of quantifying downward sensible heat flux and heat release from canopy biomass in tall forest in order to improve the quantification of evaporation.
Mehdi Rahmati, Lutz Weihermüller, Jan Vanderborght, Yakov A. Pachepsky, Lili Mao, Seyed Hamidreza Sadeghi, Niloofar Moosavi, Hossein Kheirfam, Carsten Montzka, Kris Van Looy, Brigitta Toth, Zeinab Hazbavi, Wafa Al Yamani, Ammar A. Albalasmeh, Ma'in Z. Alghzawi, Rafael Angulo-Jaramillo, Antônio Celso Dantas Antonino, George Arampatzis, Robson André Armindo, Hossein Asadi, Yazidhi Bamutaze, Jordi Batlle-Aguilar, Béatrice Béchet, Fabian Becker, Günter Blöschl, Klaus Bohne, Isabelle Braud, Clara Castellano, Artemi Cerdà, Maha Chalhoub, Rogerio Cichota, Milena Císlerová, Brent Clothier, Yves Coquet, Wim Cornelis, Corrado Corradini, Artur Paiva Coutinho, Muriel Bastista de Oliveira, José Ronaldo de Macedo, Matheus Fonseca Durães, Hojat Emami, Iraj Eskandari, Asghar Farajnia, Alessia Flammini, Nándor Fodor, Mamoun Gharaibeh, Mohamad Hossein Ghavimipanah, Teamrat A. Ghezzehei, Simone Giertz, Evangelos G. Hatzigiannakis, Rainer Horn, Juan José Jiménez, Diederik Jacques, Saskia Deborah Keesstra, Hamid Kelishadi, Mahboobeh Kiani-Harchegani, Mehdi Kouselou, Madan Kumar Jha, Laurent Lassabatere, Xiaoyan Li, Mark A. Liebig, Lubomír Lichner, María Victoria López, Deepesh Machiwal, Dirk Mallants, Micael Stolben Mallmann, Jean Dalmo de Oliveira Marques, Miles R. Marshall, Jan Mertens, Félicien Meunier, Mohammad Hossein Mohammadi, Binayak P. Mohanty, Mansonia Pulido-Moncada, Suzana Montenegro, Renato Morbidelli, David Moret-Fernández, Ali Akbar Moosavi, Mohammad Reza Mosaddeghi, Seyed Bahman Mousavi, Hasan Mozaffari, Kamal Nabiollahi, Mohammad Reza Neyshabouri, Marta Vasconcelos Ottoni, Theophilo Benedicto Ottoni Filho, Mohammad Reza Pahlavan-Rad, Andreas Panagopoulos, Stephan Peth, Pierre-Emmanuel Peyneau, Tommaso Picciafuoco, Jean Poesen, Manuel Pulido, Dalvan José Reinert, Sabine Reinsch, Meisam Rezaei, Francis Parry Roberts, David Robinson, Jesús Rodrigo-Comino, Otto Corrêa Rotunno Filho, Tadaomi Saito, Hideki Suganuma, Carla Saltalippi, Renáta Sándor, Brigitta Schütt, Manuel Seeger, Nasrollah Sepehrnia, Ehsan Sharifi Moghaddam, Manoj Shukla, Shiraki Shutaro, Ricardo Sorando, Ajayi Asishana Stanley, Peter Strauss, Zhongbo Su, Ruhollah Taghizadeh-Mehrjardi, Encarnación Taguas, Wenceslau Geraldes Teixeira, Ali Reza Vaezi, Mehdi Vafakhah, Tomas Vogel, Iris Vogeler, Jana Votrubova, Steffen Werner, Thierry Winarski, Deniz Yilmaz, Michael H. Young, Steffen Zacharias, Yijian Zeng, Ying Zhao, Hong Zhao, and Harry Vereecken
Earth Syst. Sci. Data, 10, 1237–1263, https://doi.org/10.5194/essd-10-1237-2018, https://doi.org/10.5194/essd-10-1237-2018, 2018
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This paper presents and analyzes a global database of soil infiltration data, the SWIG database, for the first time. In total, 5023 infiltration curves were collected across all continents in the SWIG database. These data were either provided and quality checked by the scientists or they were digitized from published articles. We are convinced that the SWIG database will allow for a better parameterization of the infiltration process in land surface models and for testing infiltration models.
Hong Zhao, Yijian Zeng, Shaoning Lv, and Zhongbo Su
Earth Syst. Sci. Data, 10, 1031–1061, https://doi.org/10.5194/essd-10-1031-2018, https://doi.org/10.5194/essd-10-1031-2018, 2018
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The Tibet-Obs soil properties dataset was compiled based on in situ and laboratory measurements of soil profiles across three climate zones on the Tibetan Plateau. The appropriate parameterization schemes of soil hydraulic and thermal properties were discussed for their applicability in land surface modeling. The uncertainties of existing soil datasets were evaluated. This paper contributes to land surface modeling and hydro-climatology communities for their studies of the third pole region.
Rahul Raj, Christiaan van der Tol, Nicholas Alexander Samuel Hamm, and Alfred Stein
Geosci. Model Dev., 11, 83–101, https://doi.org/10.5194/gmd-11-83-2018, https://doi.org/10.5194/gmd-11-83-2018, 2018
Fakhereh Alidoost, Alfred Stein, Zhongbo Su, and Ali Sharifi
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2017-93, https://doi.org/10.5194/hess-2017-93, 2017
Manuscript not accepted for further review
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Weather stations are often sparse and systematic under/overestimation of a global weather forecast system leads to bias. Most of the available bias correction methods do not consider higher order moments of a probability distribution and they use same distributions families to estimate both marginal and multivariate distributions. We propose three new copula-based bias correction methods, which describe the dependence structure between air temperature and covariates.
Jian Peng, Alexander Loew, Xuelong Chen, Yaoming Ma, and Zhongbo Su
Hydrol. Earth Syst. Sci., 20, 3167–3182, https://doi.org/10.5194/hess-20-3167-2016, https://doi.org/10.5194/hess-20-3167-2016, 2016
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The Tibetan Plateau plays a major role in regional and global climate. The knowledge of latent heat flux can help to better describe the complex interactions between land and atmosphere. The purpose of this paper is to provide a detailed cross-comparison of existing latent heat flux products over the TP. The results highlight the recently developed latent heat product – High Resolution Land Surface Parameters from Space (HOLAPS).
Lianyu Yu, Yijian Zeng, Zhongbo Su, Huanjie Cai, and Zhen Zheng
Hydrol. Earth Syst. Sci., 20, 975–990, https://doi.org/10.5194/hess-20-975-2016, https://doi.org/10.5194/hess-20-975-2016, 2016
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The coupled water vapor and heat transport model using two different ET (ETdir, ETind) methods varied concerning the simulation of soil moisture and ET components, while agreed well for the simulation of soil temperature. Considering aerodynamic and surface resistance terms improved the ETdir method regarding simulating soil evaporation, especially after irrigation. The interactive effect of crop growth parameters with changing environment played an important role in estimating ET components.
X. Chen, Z. Su, Y. Ma, S. Liu, Q. Yu, and Z. Xu
Atmos. Chem. Phys., 14, 13097–13117, https://doi.org/10.5194/acp-14-13097-2014, https://doi.org/10.5194/acp-14-13097-2014, 2014
R. van der Velde, M. S. Salama, T. Pellarin, M. Ofwono, Y. Ma, and Z. Su
Hydrol. Earth Syst. Sci., 18, 1323–1337, https://doi.org/10.5194/hess-18-1323-2014, https://doi.org/10.5194/hess-18-1323-2014, 2014
Related subject area
Biogeosciences
Alquimia v1.0: a generic interface to biogeochemical codes – a tool for interoperable development, prototyping and benchmarking for multiphysics simulators
Soil nitrous oxide emissions from global land ecosystems and their drivers within the LPJ-GUESS model (v4.1)
Parameterization toolbox for a physical–biogeochemical model compatible with FABM – a case study: the coupled 1D GOTM–ECOSMO E2E for the Sylt–Rømø Bight, North Sea
H2MV (v1.0): global physically constrained deep learning water cycle model with vegetation
NN-TOC v1: global prediction of total organic carbon in marine sediments using deep neural networks
China Wildfire Emission Dataset (ChinaWED v1) for the period 2012–2022
Process-based modeling of solar-induced chlorophyll fluorescence with VISIT-SIF version 1.0
Including the phosphorus cycle into the LPJ-GUESS dynamic global vegetation model (v4.1, r10994) – global patterns and temporal trends of N and P primary production limitation
A comprehensive land-surface vegetation model for multi-stream data assimilation, D&B v1.0
Sources of uncertainty in the SPITFIRE global fire model: development of LPJmL-SPITFIRE1.9 and directions for future improvements
Spatially varying parameters improve carbon cycle modeling in the Amazon rainforest with ORCHIDEE r8849
The unicellular NUM v.0.91: a trait-based plankton model evaluated in two contrasting biogeographic provinces
FESOM2.1-REcoM3-MEDUSA2: an ocean–sea ice–biogeochemistry model coupled to a sediment model
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
Emulating grid-based forest carbon dynamics using machine learning: an LPJ-GUESS v4.1.1 application
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
pyVPRM: A next-generation Vegetation Photosynthesis and Respiration Model for the post-MODIS era
Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating the drought response of European tree species with the dynamic vegetation model LPJ-GUESS (v4.1, 97c552c5)
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
BIOPERIANT12: a mesoscale resolving coupled physics-biogeochemical model for the Southern Ocean
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
Development and assessment of the physical-biogeochemical ocean regional model in the Northwest Pacific: NPRT v1.0 (ROMS v3.9–TOPAZ v2.0)
TROLL 4.0: representing water and carbon fluxes, leaf phenology and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 1: Model description
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
TROLL 4.0: representing water and carbon fluxes, leaf phenology, and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 2: Model evaluation for two Amazonian sites
Estimation of above- and below-ground ecosystem parameters for the DVM-DOS-TEM v0.7.0 model using MADS v1.7.3: a synthetic case study
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
ML4Fire-XGBv1.0: Improving North American wildfire prediction by integrating a machine-learning fire model in a land surface model
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Sergi Molins, Benjamin J. Andre, Jeffrey N. Johnson, Glenn E. Hammond, Benjamin N. Sulman, Konstantin Lipnikov, Marcus S. Day, James J. Beisman, Daniil Svyatsky, Hang Deng, Peter C. Lichtner, Carl I. Steefel, and J. David Moulton
Geosci. Model Dev., 18, 3241–3263, https://doi.org/10.5194/gmd-18-3241-2025, https://doi.org/10.5194/gmd-18-3241-2025, 2025
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Developing scientific software and making sure it functions properly requires a significant effort. As we advance our understanding of natural systems, however, there is the need to develop yet more complex models and codes. In this work, we present a piece of software that facilitates this work, specifically with regard to reactive processes. Existing tried-and-true codes are made available via this new interface, freeing up resources to focus on the new aspects of the problems at hand.
Jianyong Ma, Almut Arneth, Benjamin Smith, Peter Anthoni, Xu-Ri, Peter Eliasson, David Wårlind, Martin Wittenbrink, and Stefan Olin
Geosci. Model Dev., 18, 3131–3155, https://doi.org/10.5194/gmd-18-3131-2025, https://doi.org/10.5194/gmd-18-3131-2025, 2025
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Nitrous oxide (N2O) is a powerful greenhouse gas mainly released from natural and agricultural soils. This study examines how global soil N2O emissions changed from 1961 to 2020 and identifies key factors driving these changes using an ecological model. The findings highlight croplands as the largest source, with factors like fertilizer use and climate change enhancing emissions. Rising CO2 levels, however, can partially mitigate N2O emissions through increased plant nitrogen uptake.
Hoa Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
Geosci. Model Dev., 18, 2961–2982, https://doi.org/10.5194/gmd-18-2961-2025, https://doi.org/10.5194/gmd-18-2961-2025, 2025
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Parameterization is key in modeling to reproduce observations well but is often done manually. This study presents a particle-swarm-optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, providing different insights into ecosystem dynamics, and (2) optimized model complexity.
Zavud Baghirov, Martin Jung, Markus Reichstein, Marco Körner, and Basil Kraft
Geosci. Model Dev., 18, 2921–2943, https://doi.org/10.5194/gmd-18-2921-2025, https://doi.org/10.5194/gmd-18-2921-2025, 2025
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We use an innovative approach to studying the Earth's water cycle by integrating advanced machine learning techniques with a traditional water cycle model. Our model is designed to learn from observational data, with a particular emphasis on understanding the influence of vegetation on water movement. By closely aligning with real-world observations, our model offers new possibilities for enhancing our understanding of the water cycle and its interactions with vegetation.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
Geosci. Model Dev., 18, 2521–2544, https://doi.org/10.5194/gmd-18-2521-2025, https://doi.org/10.5194/gmd-18-2521-2025, 2025
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Our research uses deep learning to predict organic carbon stocks in ocean sediments, which is crucial for understanding their role in the global carbon cycle. By analysing over 22 000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate that the top 10 cm of ocean sediments hold about 156 Pg of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev., 18, 2509–2520, https://doi.org/10.5194/gmd-18-2509-2025, https://doi.org/10.5194/gmd-18-2509-2025, 2025
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The China Wildfire Emission Dataset (ChinaWED v1) estimated wildfire emissions in China during 2012–2022 as 78.13 Tg CO2, 279.47 Gg CH4, and 6.26 Gg N2O annually. Agricultural fires dominated emissions, while forest and grassland emissions decreased. Seasonal peaks occurred in late spring, with hotspots in northeast, southwest, and east China. The model emphasizes the importance of using localized emission factors and high-resolution fire estimates for accurate assessments.
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
Geosci. Model Dev., 18, 2329–2347, https://doi.org/10.5194/gmd-18-2329-2025, https://doi.org/10.5194/gmd-18-2329-2025, 2025
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Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical model developed based on the Vegetation Integrative Simulator for Trace gases (VISIT) to represent satellite-observed SIF. Our simulations reproduced the global distribution and seasonal variations in observed SIF. VISIT-SIF helps to improve photosynthetic processes through a combination of biogeochemical modeling and observed SIF.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
Geosci. Model Dev., 18, 2249–2274, https://doi.org/10.5194/gmd-18-2249-2025, https://doi.org/10.5194/gmd-18-2249-2025, 2025
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Our study maps global nitrogen (N) and phosphorus (P) availability and how they changed from 1901 to 2018. We find that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation increased, especially in the tropics, while N limitation decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, T. Luke Smallman, Susan C. Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zaehle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek S. El-Madany, Mirco Migliavacca, Marika Honkanen, Yann H. Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaétan Pique, Amanda Ojasalo, Shaun Quegan, Peter J. Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
Geosci. Model Dev., 18, 2137–2159, https://doi.org/10.5194/gmd-18-2137-2025, https://doi.org/10.5194/gmd-18-2137-2025, 2025
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When it comes to climate change, the land surface is where the vast majority of impacts happen. The task of monitoring those impacts across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us capture the changes that happen on our lands.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
Geosci. Model Dev., 18, 2021–2050, https://doi.org/10.5194/gmd-18-2021-2025, https://doi.org/10.5194/gmd-18-2021-2025, 2025
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Under climate change, the conditions necessary for wildfires to form are occurring more frequently in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a basis for future improvements.
Lei Zhu, Philippe Ciais, Yitong Yao, Daniel Goll, Sebastiaan Luyssaert, Isabel Martínez Cano, Arthur Fendrich, Laurent Li, Hui Yang, Sassan Saatchi, and Wei Li
EGUsphere, https://doi.org/10.5194/egusphere-2025-397, https://doi.org/10.5194/egusphere-2025-397, 2025
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This study enhances the accuracy of modeling the carbon dynamics of Amazon rainforest by optimizing key model parameters based on satellite data. Using spatially varying parameters for tree mortality and photosynthesis, we improved predictions of biomass, productivity, and tree mortality. Our findings highlight the critical role of wood density and water availability in forest processes, offering insights to refine global carbon cycle models.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev., 18, 1895–1916, https://doi.org/10.5194/gmd-18-1895-2025, https://doi.org/10.5194/gmd-18-1895-2025, 2025
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We describe and test the size-based Nutrient-Unicellular-Multicellular model, which defines unicellular plankton using a single set of parameters, on a eutrophic and oligotrophic ecosystem. The results demonstrate that both sites can be modeled with similar parameters and robust performance over a wide range of parameters. The study shows that the model is useful for non-experts and applicable for modeling ecosystems with limited data. It holds promise for evolutionary and deep-time climate models.
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev., 18, 977–1000, https://doi.org/10.5194/gmd-18-977-2025, https://doi.org/10.5194/gmd-18-977-2025, 2025
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Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change, the carbon storage in sediments slows down carbon cycling and influences feedbacks in the atmosphere–ocean–sediment system. This paper describes the coupling of a sediment model to an ocean biogeochemistry model and presents results under the pre-industrial climate and under CO2 perturbation.
Juliette Bernard, Elodie Salmon, Marielle Saunois, Shushi Peng, Penélope Serrano-Ortiz, Antoine Berchet, Palingamoorthy Gnanamoorthy, Joachim Jansen, and Philippe Ciais
Geosci. Model Dev., 18, 863–883, https://doi.org/10.5194/gmd-18-863-2025, https://doi.org/10.5194/gmd-18-863-2025, 2025
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Despite their importance, uncertainties remain in the evaluation of the drivers of temporal variability of methane emissions from wetlands on a global scale. Here, a simplified global model is developed, taking advantage of advances in remote-sensing data and in situ observations. The model reproduces the large spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights into sensitivity analyses.
Carolina Natel, David Martin Belda, Peter Anthoni, Neele Haß, Sam Rabin, and Almut Arneth
EGUsphere, https://doi.org/10.5194/egusphere-2024-4064, https://doi.org/10.5194/egusphere-2024-4064, 2025
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Complex models predict forest carbon responses to future climate change but are slow and computationally intensive, limiting large-scale analyses. We used machine learning to accelerate predictions from the LPJ-GUESS vegetation model. Our emulators, based on random forests and neural networks, achieved 97 % faster simulations. This approach enables rapid exploration of climate mitigation strategies and supports informed policy decisions.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie A. Fisher, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 18, 287–317, https://doi.org/10.5194/gmd-18-287-2025, https://doi.org/10.5194/gmd-18-287-2025, 2025
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Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Theo Glauch, Julia Marshall, Christoph Gerbig, Santiago Botía, Michał Gałkowski, Sanam N. Vardag, and André Butz
EGUsphere, https://doi.org/10.5194/egusphere-2024-3692, https://doi.org/10.5194/egusphere-2024-3692, 2025
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The Vegetation Photosynthesis and Respiration Model (VPRM) estimates carbon exchange between the atmosphere and biosphere by modeling gross primary production and respiration using satellite data and weather variables. Our new version, pyVPRM, supports diverse satellite products like Sentinel-2, MODIS, VIIRS and new land cover maps, enabling high spatial and temporal resolution. This improves flux estimates, especially in complex landscapes, and ensures continuity as MODIS nears decommissioning.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
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The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
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In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
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The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Benjamin Franklin Meyer, João Paulo Darela-Filho, Konstantin Gregor, Allan Buras, Qiao-Lin Gu, Andreas Krause, Daijun Liu, Phillip Papastefanou, Sijeh Asuk, Thorsten E. E. Grams, Christian S. Zang, and Anja Rammig
EGUsphere, https://doi.org/10.5194/egusphere-2024-3352, https://doi.org/10.5194/egusphere-2024-3352, 2024
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Climate change has increased the likelihood of drought events across Europe, potentially threatening European forest carbon sink. Dynamic vegetation models with mechanistic plant hydraulic architecture are needed to model these developments. We evaluate the plant hydraulic architecture version of LPJ-GUESS and show it's capability at capturing species-specific evapotranspiration responses to drought and reproducing flux observations of both gross primary production and evapotranspiration.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Nicolette Chang, Sarah-Anne Nicholson, Marcel du Plessis, Alice D. Lebehot, Thulwaneng Mashifane, Tumelo C. Moalusi, N. Precious Mongwe, and Pedro M. S. Monteiro
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-182, https://doi.org/10.5194/gmd-2024-182, 2024
Revised manuscript accepted for GMD
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Mesoscale features (10's to 100's of km) in the Southern Ocean (SO) are crucial for global heat and carbon transport, but often unresolved in models due to high computational costs. To address this source of uncertainty, we use a regional, NEMO model of the SO at 8 km resolution with coupled ocean, ice, and biogeochemistry, BIOPERIANT12. This serves as an experimental platform to explore physical-biogeochemical interactions, model parameters/formulations, and configuring future models.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Daehyuk Kim, Hyun-Chae Jung, Jae-Hong Moon, and Na-Hyeon Lee
EGUsphere, https://doi.org/10.5194/egusphere-2024-1509, https://doi.org/10.5194/egusphere-2024-1509, 2024
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Physical–biogeochemical ocean global models is difficult to analyze oceanic environmental systems. To accurately understand the physical–biogeochemical processes at the regional scale, physical and biogeochemical models were coupled at a high resolution. The results successfully simulated the seasonal variations of chlorophyll and nutrients, particularly in the marginal seas, which were not captured by global models. The model is an important tool for studying physical–biogeochemical processes.
Isabelle Maréchaux, Fabian Jörg Fischer, Sylvain Schmitt, and Jérôme Chave
EGUsphere, https://doi.org/10.5194/egusphere-2024-3104, https://doi.org/10.5194/egusphere-2024-3104, 2024
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We describe TROLL 4.0, a simulator of forest dynamics that represents trees in a virtual space at one-meter resolution. Tree birth, growth, death and the underlying physiological processes such as carbon assimilation, water transpiration and leaf phenology depend on plant traits that are measured in the field for many individuals and species. The model is thus capable of jointly simulating forest structure, diversity and ecosystem functioning, a major challenge in modelling vegetation dynamics.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Sylvain Schmitt, Fabian Fischer, James Ball, Nicolas Barbier, Marion Boisseaux, Damien Bonal, Benoit Burban, Xiuzhi Chen, Géraldine Derroire, Jeremy Lichstein, Daniela Nemetschek, Natalia Restrepo-Coupe, Scott Saleska, Giacomo Sellan, Philippe Verley, Grégoire Vincent, Camille Ziegler, Jérôme Chave, and Isabelle Maréchaux
EGUsphere, https://doi.org/10.5194/egusphere-2024-3106, https://doi.org/10.5194/egusphere-2024-3106, 2024
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We evaluate the capability of TROLL 4.0, a simulator of forest dynamics, to represent tropical forest structure, diversity and functioning in two Amazonian forests. Evaluation data include forest inventories, carbon and water fluxes between the forest and the atmosphere, and leaf area and canopy height from remote-sensing products. The model realistically predicts the structure and composition, and the seasonality of carbon and water fluxes at both sites.
Elchin E. Jafarov, Helene Genet, Velimir V. Vesselinov, Valeria Briones, Aiza Kabeer, Andrew L. Mullen, Benjamin Maglio, Tobey Carman, Ruth Rutter, Joy Clein, Chu-Chun Chang, Dogukan Teber, Trevor Smith, Joshua M. Rady, Christina Schädel, Jennifer D. Watts, Brendan M. Rogers, and Susan M. Natali
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-158, https://doi.org/10.5194/gmd-2024-158, 2024
Revised manuscript accepted for GMD
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Thawing permafrost could greatly impact global climate. Our study improves modeling of carbon cycling in Arctic ecosystems. We developed an automated method to fine-tune a model that simulates carbon and nitrogen flows, using computer-generated data. Using computer-generated data, we tested our method and found it enhances accuracy and reduces the time needed for calibration. This work helps make climate predictions more reliable in sensitive permafrost regions.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Ye Liu, Huilin Huang, Sing-Chun Wang, Tao Zhang, Donghui Xu, and Yang Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-151, https://doi.org/10.5194/gmd-2024-151, 2024
Revised manuscript accepted for GMD
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This study integrates machine learning with a land surface model to improve wildfire predictions in North America. Traditional models struggle with accurately simulating burned areas due to simplified processes. By combining the predictive power of machine learning with a land model, our hybrid framework better captures fire dynamics. This approach enhances our understanding of wildfire behavior and aids in developing more effective climate and fire management strategies.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
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Short summary
This study integrates photosynthesis and transfer of energy, mass, and momentum in the soil–plant–atmosphere continuum system, via a simplified 1D root growth model. The results indicated that the simulation of land surface fluxes was significantly improved by considering the root water uptake, especially when vegetation was experiencing severe water stress. This finding highlights the importance of enhanced soil heat and moisture transfer in simulating ecosystem functioning.
This study integrates photosynthesis and transfer of energy, mass, and momentum in the...
