Articles | Volume 13, issue 10
https://doi.org/10.5194/gmd-13-4663-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-13-4663-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Optimality-based non-Redfield plankton–ecosystem model (OPEM v1.1) in UVic-ESCM 2.9 – Part 1: Implementation and model behaviour
Markus Pahlow
CORRESPONDING AUTHOR
GEOMAR Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
Chia-Te Chien
GEOMAR Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
Lionel A. Arteaga
Program in Atmospheric and Oceanic Sciences, Princeton University, Princeton, NJ, USA
present address: NASA Global Modeling and Assimilation Office, Universities Space Research Association, Columbia, MD, USA
Andreas Oschlies
GEOMAR Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
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In this paper we quantify the subduction of upwelled nitrate due to physical processes on the order of several kilometers in the coastal upwelling off Peru and its effect on primary production. We also compare the prepresentation of these processes in a high-resolution simulation (~2.5 km) with a more coarsely resolved simulation (~12 km). To do this, we combine high-resolution shipboard observations of physical and biogeochemical parameters with a complex biogeochemical model configuration.
Mariana Hill Cruz, Iris Kriest, Yonss Saranga José, Rainer Kiko, Helena Hauss, and Andreas Oschlies
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Chia-Te Chien, Markus Pahlow, Markus Schartau, and Andreas Oschlies
Geosci. Model Dev., 13, 4691–4712, https://doi.org/10.5194/gmd-13-4691-2020, https://doi.org/10.5194/gmd-13-4691-2020, 2020
Short summary
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We demonstrate sensitivities of tracers to parameters of a new optimality-based plankton–ecosystem model (OPEM) in the UVic-ESCM. We find that changes in phytoplankton subsistence nitrogen quota strongly impact the nitrogen inventory, nitrogen fixation, and elemental stoichiometry of ordinary phytoplankton and diazotrophs. We introduce a new likelihood-based metric for model calibration, and it shows the capability of constraining globally averaged oxygen, nitrate, and DIC concentrations.
Nadine Mengis, David P. Keller, Andrew H. MacDougall, Michael Eby, Nesha Wright, Katrin J. Meissner, Andreas Oschlies, Andreas Schmittner, Alexander J. MacIsaac, H. Damon Matthews, and Kirsten Zickfeld
Geosci. Model Dev., 13, 4183–4204, https://doi.org/10.5194/gmd-13-4183-2020, https://doi.org/10.5194/gmd-13-4183-2020, 2020
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In this paper, we evaluate the newest version of the University of Victoria Earth System Climate Model (UVic ESCM 2.10). Combining recent model developments as a joint effort, this version is to be used in the next phase of model intercomparison and climate change studies. The UVic ESCM 2.10 is capable of reproducing changes in historical temperature and carbon fluxes well. Additionally, the model is able to reproduce the three-dimensional distribution of many ocean tracers.
Sabine Mathesius, Julia Getzlaff, Heiner Dietze, Andreas Oschlies, and Markus Schartau
Earth Syst. Sci. Data, 12, 1775–1787, https://doi.org/10.5194/essd-12-1775-2020, https://doi.org/10.5194/essd-12-1775-2020, 2020
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Iris Kriest, Paul Kähler, Wolfgang Koeve, Karin Kvale, Volkmar Sauerland, and Andreas Oschlies
Biogeosciences, 17, 3057–3082, https://doi.org/10.5194/bg-17-3057-2020, https://doi.org/10.5194/bg-17-3057-2020, 2020
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Constants of global biogeochemical ocean models are often tuned
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Fabian Reith, Wolfgang Koeve, David P. Keller, Julia Getzlaff, and Andreas Oschlies
Earth Syst. Dynam., 10, 711–727, https://doi.org/10.5194/esd-10-711-2019, https://doi.org/10.5194/esd-10-711-2019, 2019
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Tronje P. Kemena, Angela Landolfi, Andreas Oschlies, Klaus Wallmann, and Andrew W. Dale
Earth Syst. Dynam., 10, 539–553, https://doi.org/10.5194/esd-10-539-2019, https://doi.org/10.5194/esd-10-539-2019, 2019
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Oceanic deoxygenation is driven by climate change in several areas of the global ocean. Measurements indicate that ocean volumes with very low oxygen levels expand, with consequences for marine organisms and fishery. We found climate-change-driven phosphorus (P) input in the ocean is hereby an important driver for deoxygenation on longer timescales with effects in the next millennia.
Daniela Niemeyer, Iris Kriest, and Andreas Oschlies
Biogeosciences, 16, 3095–3111, https://doi.org/10.5194/bg-16-3095-2019, https://doi.org/10.5194/bg-16-3095-2019, 2019
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Recent studies suggest spatial variations of the marine particle flux length scale. Using a global biogeochemical ocean model, we investigate whether changes in particle size and size-dependent sinking can explain this variation. We address uncertainties by varying aggregate properties and circulation. Both aspects have an impact on the representation of nutrients, oxygen and oxygen minimum zones. The formation and sinking of large aggregates in productive areas lead to deeper flux penetration.
Yonss Saranga José, Lothar Stramma, Sunke Schmidtko, and Andreas Oschlies
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-155, https://doi.org/10.5194/bg-2019-155, 2019
Revised manuscript accepted for BG
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In situ observations along the Peruvian and Chilean coasts have exhibited variability in the water column oxygen concentration. This variability, which is attributed to the El Niño Southern Oscillation (ENSO), might have implication on the vertical extension of the Eastern Tropical South Pacific (ETSP) oxygen minimum zone. Here using a coupled physical-biogeochemical model, we provide new insights into how ENSO variability affects the vertical extension of the oxygen-poor waters of the ETSP.
Olaf Duteil, Andreas Oschlies, and Claus W. Böning
Biogeosciences, 15, 7111–7126, https://doi.org/10.5194/bg-15-7111-2018, https://doi.org/10.5194/bg-15-7111-2018, 2018
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Marine Bretagnon, Aurélien Paulmier, Véronique Garçon, Boris Dewitte, Séréna Illig, Nathalie Leblond, Laurent Coppola, Fernando Campos, Federico Velazco, Christos Panagiotopoulos, Andreas Oschlies, J. Martin Hernandez-Ayon, Helmut Maske, Oscar Vergara, Ivonne Montes, Philippe Martinez, Edgardo Carrasco, Jacques Grelet, Olivier Desprez-De-Gesincourt, Christophe Maes, and Lionel Scouarnec
Biogeosciences, 15, 5093–5111, https://doi.org/10.5194/bg-15-5093-2018, https://doi.org/10.5194/bg-15-5093-2018, 2018
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In oxygen minimum zone, the fate of the organic matter is a key question as the low oxygen condition would preserve the OM and thus enhance the biological carbon pump while the high microbial activity would foster the remineralisation and the greenhouse gases emission. To investigate this paradigm, sediment traps were deployed off Peru. We pointed out the influence of the oxygenation as well as the organic matter quantity and quality on the carbon transfer efficiency in the oxygen minimum zone.
Volkmar Sauerland, Ulrike Löptien, Claudine Leonhard, Andreas Oschlies, and Anand Srivastav
Geosci. Model Dev., 11, 1181–1198, https://doi.org/10.5194/gmd-11-1181-2018, https://doi.org/10.5194/gmd-11-1181-2018, 2018
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We present a concept to prove that a parametric model is well calibrated, i.e., that changes of its free parameters cannot lead to a much better model–data misfit anymore. The intention is motivated by the fact that calibrating global biogeochemical ocean models is important for assessment and inter-model comparison but computationally expensive.
Nadine Mengis, David P. Keller, and Andreas Oschlies
Earth Syst. Dynam., 9, 15–31, https://doi.org/10.5194/esd-9-15-2018, https://doi.org/10.5194/esd-9-15-2018, 2018
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The Systematic Correlation Matrix Evaluation (SCoMaE) method applies statistical information to systematically select, transparent, nonredundant indicators for a comprehensive assessment of the Earth system state. We show that due to changing climate forcing, such as anthropogenic climate change, the ad hoc assessment indicators might need to be reevaluated. Within an iterative process, this method would allow us to select scientifically consistent and societally relevant assessment indicators.
Karin F. Kvale, Samar Khatiwala, Heiner Dietze, Iris Kriest, and Andreas Oschlies
Geosci. Model Dev., 10, 2425–2445, https://doi.org/10.5194/gmd-10-2425-2017, https://doi.org/10.5194/gmd-10-2425-2017, 2017
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Computer models of ocean biology and chemistry are becoming increasingly complex, and thus more expensive, to run. One solution is to approximate the behaviour of the ocean physics and store that information outside of the model. That
offlineinformation can then be used to calculate a steady-state solution from the model's biology and chemistry, without waiting for a traditional
onlineintegration to complete. We show this offline method reproduces online results and is 100 times faster.
James C. Orr, Raymond G. Najjar, Olivier Aumont, Laurent Bopp, John L. Bullister, Gokhan Danabasoglu, Scott C. Doney, John P. Dunne, Jean-Claude Dutay, Heather Graven, Stephen M. Griffies, Jasmin G. John, Fortunat Joos, Ingeborg Levin, Keith Lindsay, Richard J. Matear, Galen A. McKinley, Anne Mouchet, Andreas Oschlies, Anastasia Romanou, Reiner Schlitzer, Alessandro Tagliabue, Toste Tanhua, and Andrew Yool
Geosci. Model Dev., 10, 2169–2199, https://doi.org/10.5194/gmd-10-2169-2017, https://doi.org/10.5194/gmd-10-2169-2017, 2017
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The Ocean Model Intercomparison Project (OMIP) is a model comparison effort under Phase 6 of the Coupled Model Intercomparison Project (CMIP6). Its physical component is described elsewhere in this special issue. Here we describe its ocean biogeochemical component (OMIP-BGC), detailing simulation protocols and analysis diagnostics. Simulations focus on ocean carbon, other biogeochemical tracers, air-sea exchange of CO2 and related gases, and chemical tracers used to evaluate modeled circulation.
Daniela Niemeyer, Tronje P. Kemena, Katrin J. Meissner, and Andreas Oschlies
Earth Syst. Dynam., 8, 357–367, https://doi.org/10.5194/esd-8-357-2017, https://doi.org/10.5194/esd-8-357-2017, 2017
Markus Schartau, Philip Wallhead, John Hemmings, Ulrike Löptien, Iris Kriest, Shubham Krishna, Ben A. Ward, Thomas Slawig, and Andreas Oschlies
Biogeosciences, 14, 1647–1701, https://doi.org/10.5194/bg-14-1647-2017, https://doi.org/10.5194/bg-14-1647-2017, 2017
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Plankton models have become an integral part in marine ecosystem and biogeochemical research. These models differ in complexity and in their number of parameters. How values are assigned to parameters is essential. An overview of major methodologies of parameter estimation is provided. Aspects of parameter identification in the literature are diverse. Individual findings could be better synthesized if notation and expertise of the different scientific communities would be reasonably merged.
Yonss Saranga José, Heiner Dietze, and Andreas Oschlies
Biogeosciences, 14, 1349–1364, https://doi.org/10.5194/bg-14-1349-2017, https://doi.org/10.5194/bg-14-1349-2017, 2017
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This study aims to investigate the diverse subsurface nutrient patterns observed within anticyclonic eddies in the upwelling system off Peru. Two simulated anticyclonic eddies with opposing subsurface nitrate concentrations were analysed. The results show that diverse nutrient patterns within anticyclonic eddies are related to the presence of water mass from different origins at different depths, responding to variations in depth of the circulation strength at the edge of the eddy.
Iris Kriest, Volkmar Sauerland, Samar Khatiwala, Anand Srivastav, and Andreas Oschlies
Geosci. Model Dev., 10, 127–154, https://doi.org/10.5194/gmd-10-127-2017, https://doi.org/10.5194/gmd-10-127-2017, 2017
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Global biogeochemical ocean models are subject to a high level of parametric uncertainty. This may be of consequence for their skill with respect to accurately describing features of the present ocean and their sensitivity to possible environmental changes. We present the first results from a framework that combines an offline biogeochemical tracer transport model with an estimation of distribution algorithm, calibrating six biogeochemical model parameters against observed oxygen and nutrients.
Fabian Reith, David P. Keller, and Andreas Oschlies
Earth Syst. Dynam., 7, 797–812, https://doi.org/10.5194/esd-7-797-2016, https://doi.org/10.5194/esd-7-797-2016, 2016
Bei Su, Markus Pahlow, and Andreas Oschlies
Biogeosciences, 13, 4985–5001, https://doi.org/10.5194/bg-13-4985-2016, https://doi.org/10.5194/bg-13-4985-2016, 2016
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Previously identified positive feedbacks within the nitrogen cycle in the eastern tropical South Pacific (ETSP) have challenged our understanding of the observed dynamics and stability of the nitrogen inventory. We present a box model analysis of the biological and biogeochemical relations in the ETSP among nitrogen deposition, benthic denitrification and phosphate regeneration. Our results suggest dominant stabilizing feedbacks tending to keep a balanced nitrogen inventory in the ETSP.
Carolin R. Löscher, Hermann W. Bange, Ruth A. Schmitz, Cameron M. Callbeck, Anja Engel, Helena Hauss, Torsten Kanzow, Rainer Kiko, Gaute Lavik, Alexandra Loginova, Frank Melzner, Judith Meyer, Sven C. Neulinger, Markus Pahlow, Ulf Riebesell, Harald Schunck, Sören Thomsen, and Hannes Wagner
Biogeosciences, 13, 3585–3606, https://doi.org/10.5194/bg-13-3585-2016, https://doi.org/10.5194/bg-13-3585-2016, 2016
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The ocean loses oxygen due to climate change. Addressing this issue in tropical ocean regions (off Peru and Mauritania), we aimed to understand the effects of oxygen depletion on various aspects of marine biogeochemistry, including primary production and export production, the nitrogen cycle, greenhouse gas production, organic matter fluxes and remineralization, and the role of zooplankton and viruses.
I. Kriest and A. Oschlies
Geosci. Model Dev., 8, 2929–2957, https://doi.org/10.5194/gmd-8-2929-2015, https://doi.org/10.5194/gmd-8-2929-2015, 2015
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We use a global model of oceanic P, N, and O2 cycles to investigate consequences of uncertainties in description of organic matter sinking, remineralization, denitrification, and N2-Fixation. After all biogeochemical and physical processes have been spun-up into a dynamically consistent steady-state, particle sinking and oxidant affinities of aerobic and anaerobic remineralization determine the extent of oxygen minimum zones, global nitrogen fluxes, and the oceanic nitrogen inventory.
W. Koeve, H. Wagner, P. Kähler, and A. Oschlies
Geosci. Model Dev., 8, 2079–2094, https://doi.org/10.5194/gmd-8-2079-2015, https://doi.org/10.5194/gmd-8-2079-2015, 2015
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The natural abundance of 14C in CO2 dissolved in seawater is often used to evaluate circulation and age in the ocean and in ocean models. We study limitations of using natural 14C to determine the time elapsed since water had contact with the atmosphere. We find that, globally, bulk 14C age is dominated by two equally important components, (1) the time component of circulation and (2) the “preformed 14C-age”. Considering preformed 14C-age is critical for an assessment of circulation in models.
L. Nickelsen, D. P. Keller, and A. Oschlies
Geosci. Model Dev., 8, 1357–1381, https://doi.org/10.5194/gmd-8-1357-2015, https://doi.org/10.5194/gmd-8-1357-2015, 2015
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In this paper we find that including the marine cycle of the phytoplankton nutrient iron in a global climate model improves the agreement between observed and simulated nutrient concentrations in the ocean and that a better description of the source of iron from the sediment to the ocean is more important than that of iron-containing dust deposition. Finally, we find that the response of the iron cycle to climate warming affects the phytoplankton growth and nutrient cycles.
B. Su, M. Pahlow, H. Wagner, and A. Oschlies
Biogeosciences, 12, 1113–1130, https://doi.org/10.5194/bg-12-1113-2015, https://doi.org/10.5194/bg-12-1113-2015, 2015
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A box model of the eastern tropical South Pacific oxygen minimum zone suggests that anaerobic water-column remineralization rates have to be slower than aerobic remineralization in order to explain the relatively high values of observed nitrate concentrations. Lateral oxygen supply sufficient to oxidize about one-fifth of the export production is required to prevent an anoxic deep ocean. Under these circumstances, the region can be a net source of fixed nitrogen to the surrounding ocean.
W. Koeve, O. Duteil, A. Oschlies, P. Kähler, and J. Segschneider
Geosci. Model Dev., 7, 2393–2408, https://doi.org/10.5194/gmd-7-2393-2014, https://doi.org/10.5194/gmd-7-2393-2014, 2014
A. E. F. Prowe, M. Pahlow, S. Dutkiewicz, and A. Oschlies
Biogeosciences, 11, 3397–3407, https://doi.org/10.5194/bg-11-3397-2014, https://doi.org/10.5194/bg-11-3397-2014, 2014
I. Kriest and A. Oschlies
Biogeosciences, 10, 8401–8422, https://doi.org/10.5194/bg-10-8401-2013, https://doi.org/10.5194/bg-10-8401-2013, 2013
O. Duteil, W. Koeve, A. Oschlies, D. Bianchi, E. Galbraith, I. Kriest, and R. Matear
Biogeosciences, 10, 7723–7738, https://doi.org/10.5194/bg-10-7723-2013, https://doi.org/10.5194/bg-10-7723-2013, 2013
C. J. Somes, A. Oschlies, and A. Schmittner
Biogeosciences, 10, 5889–5910, https://doi.org/10.5194/bg-10-5889-2013, https://doi.org/10.5194/bg-10-5889-2013, 2013
V. Cocco, F. Joos, M. Steinacher, T. L. Frölicher, L. Bopp, J. Dunne, M. Gehlen, C. Heinze, J. Orr, A. Oschlies, B. Schneider, J. Segschneider, and J. Tjiputra
Biogeosciences, 10, 1849–1868, https://doi.org/10.5194/bg-10-1849-2013, https://doi.org/10.5194/bg-10-1849-2013, 2013
A. Landolfi, H. Dietze, W. Koeve, and A. Oschlies
Biogeosciences, 10, 1351–1363, https://doi.org/10.5194/bg-10-1351-2013, https://doi.org/10.5194/bg-10-1351-2013, 2013
M. El Jarbi, J. Rückelt, T. Slawig, and A. Oschlies
Biogeosciences, 10, 1169–1182, https://doi.org/10.5194/bg-10-1169-2013, https://doi.org/10.5194/bg-10-1169-2013, 2013
L. M. Zamora, A. Oschlies, H. W. Bange, K. B. Huebert, J. D. Craig, A. Kock, and C. R. Löscher
Biogeosciences, 9, 5007–5022, https://doi.org/10.5194/bg-9-5007-2012, https://doi.org/10.5194/bg-9-5007-2012, 2012
Related subject area
Climate and Earth system modeling
Interactions between atmospheric composition and climate change – progress in understanding and future opportunities from AerChemMIP, PDRMIP, and RFMIP
CD-type discretization for sea ice dynamics in FESOM version 2
CSDMS Data Components: data–model integration tools for Earth surface processes modeling
A generic algorithm to automatically classify urban fabric according to the local climate zone system: implementation in GeoClimate 0.0.1 and application to French cities
Modelling water isotopologues (1H2H16O, 1H217O) in the coupled numerical climate model iLOVECLIM (version 1.1.5)
Accurate assessment of land–atmosphere coupling in climate models requires high-frequency data output
Towards variance-conserving reconstructions of climate indices with Gaussian process regression in an embedding space
A diatom extension to the cGEnIE Earth system model – EcoGEnIE 1.1
Carbon isotopes in the marine biogeochemistry model FESOM2.1-REcoM3
Flux coupling approach on an exchange grid for the IOW Earth System Model (version 1.04.00) of the Baltic Sea region
Using EUREC4A/ATOMIC field campaign data to improve trade wind regimes in the Community Atmosphere Model
New model ensemble reveals how forcing uncertainty and model structure alter climate simulated across CMIP generations of the Community Earth System Model
Quantifying wildfire drivers and predictability in boreal peatlands using a two-step error-correcting machine learning framework in TeFire v1.0
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Energy-conserving physics for nonhydrostatic dynamics in mass coordinate models
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Assessing the sensitivity of aerosol mass budget and effective radiative forcing to horizontal grid spacing in E3SMv1 using a regional refinement approach
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Stephanie Fiedler, Vaishali Naik, Fiona M. O'Connor, Christopher J. Smith, Paul Griffiths, Ryan J. Kramer, Toshihiko Takemura, Robert J. Allen, Ulas Im, Matthew Kasoar, Angshuman Modak, Steven Turnock, Apostolos Voulgarakis, Duncan Watson-Parris, Daniel M. Westervelt, Laura J. Wilcox, Alcide Zhao, William J. Collins, Michael Schulz, Gunnar Myhre, and Piers M. Forster
Geosci. Model Dev., 17, 2387–2417, https://doi.org/10.5194/gmd-17-2387-2024, https://doi.org/10.5194/gmd-17-2387-2024, 2024
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Climate scientists want to better understand modern climate change. Thus, climate model experiments are performed and compared. The results of climate model experiments differ, as assessed in the latest Intergovernmental Panel on Climate Change (IPCC) assessment report. This article gives insights into the challenges and outlines opportunities for further improving the understanding of climate change. It is based on views of a group of experts in atmospheric composition–climate interactions.
Sergey Danilov, Carolin Mehlmann, Dmitry Sidorenko, and Qiang Wang
Geosci. Model Dev., 17, 2287–2297, https://doi.org/10.5194/gmd-17-2287-2024, https://doi.org/10.5194/gmd-17-2287-2024, 2024
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Sea ice models are a necessary component of climate models. At very high resolution they are capable of simulating linear kinematic features, such as leads, which are important for better prediction of heat exchanges between the ocean and atmosphere. Two new discretizations are described which improve the sea ice component of the Finite volumE Sea ice–Ocean Model (FESOM version 2) by allowing simulations of finer scales.
Tian Gan, Gregory E. Tucker, Eric W. H. Hutton, Mark D. Piper, Irina Overeem, Albert J. Kettner, Benjamin Campforts, Julia M. Moriarty, Brianna Undzis, Ethan Pierce, and Lynn McCready
Geosci. Model Dev., 17, 2165–2185, https://doi.org/10.5194/gmd-17-2165-2024, https://doi.org/10.5194/gmd-17-2165-2024, 2024
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This study presents the design, implementation, and application of the CSDMS Data Components. The case studies demonstrate that the Data Components provide a consistent way to access heterogeneous datasets from multiple sources, and to seamlessly integrate them with various models for Earth surface process modeling. The Data Components support the creation of open data–model integration workflows to improve the research transparency and reproducibility.
Jérémy Bernard, Erwan Bocher, Matthieu Gousseff, François Leconte, and Elisabeth Le Saux Wiederhold
Geosci. Model Dev., 17, 2077–2116, https://doi.org/10.5194/gmd-17-2077-2024, https://doi.org/10.5194/gmd-17-2077-2024, 2024
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Geographical features may have a considerable effect on local climate. The local climate zone (LCZ) system proposed by Stewart and Oke (2012) is seen as a standard approach for classifying any zone according to a set of geographic indicators. While many methods already exist to map the LCZ, only a few tools are openly and freely available. We present the algorithm implemented in GeoClimate software to identify the LCZ of any place in the world using OpenStreetMap data.
Thomas Extier, Thibaut Caley, and Didier M. Roche
Geosci. Model Dev., 17, 2117–2139, https://doi.org/10.5194/gmd-17-2117-2024, https://doi.org/10.5194/gmd-17-2117-2024, 2024
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Stable water isotopes are used to infer changes in the hydrological cycle for different time periods in climatic archive and climate models. We present the implementation of the δ2H and δ17O water isotopes in the coupled climate model iLOVECLIM and calculate the d- and 17O-excess. Results of a simulation under preindustrial conditions show that the model correctly reproduces the water isotope distribution in the atmosphere and ocean in comparison to data and other global circulation models.
Kirsten L. Findell, Zun Yin, Eunkyo Seo, Paul A. Dirmeyer, Nathan P. Arnold, Nathaniel Chaney, Megan D. Fowler, Meng Huang, David M. Lawrence, Po-Lun Ma, and Joseph A. Santanello Jr.
Geosci. Model Dev., 17, 1869–1883, https://doi.org/10.5194/gmd-17-1869-2024, https://doi.org/10.5194/gmd-17-1869-2024, 2024
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We outline a request for sub-daily data to accurately capture the process-level connections between land states, surface fluxes, and the boundary layer response. This high-frequency model output will allow for more direct comparison with observational field campaigns on process-relevant timescales, enable demonstration of inter-model spread in land–atmosphere coupling processes, and aid in targeted identification of sources of deficiencies and opportunities for improvement of the models.
Marlene Klockmann, Udo von Toussaint, and Eduardo Zorita
Geosci. Model Dev., 17, 1765–1787, https://doi.org/10.5194/gmd-17-1765-2024, https://doi.org/10.5194/gmd-17-1765-2024, 2024
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Reconstructions of climate variability before the observational period rely on climate proxies and sophisticated statistical models to link the proxy information and climate variability. Existing models tend to underestimate the true magnitude of variability, especially if the proxies contain non-climatic noise. We present and test a promising new framework for climate-index reconstructions, based on Gaussian processes, which reconstructs robust variability estimates from noisy and sparse data.
Aaron A. Naidoo-Bagwell, Fanny M. Monteiro, Katharine R. Hendry, Scott Burgan, Jamie D. Wilson, Ben A. Ward, Andy Ridgwell, and Daniel J. Conley
Geosci. Model Dev., 17, 1729–1748, https://doi.org/10.5194/gmd-17-1729-2024, https://doi.org/10.5194/gmd-17-1729-2024, 2024
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As an extension to the EcoGEnIE 1.0 Earth system model that features a diverse plankton community, EcoGEnIE 1.1 includes siliceous plankton diatoms and also considers their impact on biogeochemical cycles. With updates to existing nutrient cycles and the introduction of the silicon cycle, we see improved model performance relative to observational data. Through a more functionally diverse plankton community, the new model enables more comprehensive future study of ocean ecology.
Martin Butzin, Ying Ye, Christoph Völker, Özgür Gürses, Judith Hauck, and Peter Köhler
Geosci. Model Dev., 17, 1709–1727, https://doi.org/10.5194/gmd-17-1709-2024, https://doi.org/10.5194/gmd-17-1709-2024, 2024
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In this paper we describe the implementation of the carbon isotopes 13C and 14C into the marine biogeochemistry model FESOM2.1-REcoM3 and present results of long-term test simulations. Our model results are largely consistent with marine carbon isotope reconstructions for the pre-anthropogenic period, but also exhibit some discrepancies.
Sven Karsten, Hagen Radtke, Matthias Gröger, Ha T. M. Ho-Hagemann, Hossein Mashayekh, Thomas Neumann, and H. E. Markus Meier
Geosci. Model Dev., 17, 1689–1708, https://doi.org/10.5194/gmd-17-1689-2024, https://doi.org/10.5194/gmd-17-1689-2024, 2024
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This paper describes the development of a regional Earth System Model for the Baltic Sea region. In contrast to conventional coupling approaches, the presented model includes a flux calculator operating on a common exchange grid. This approach automatically ensures a locally consistent treatment of fluxes and simplifies the exchange of model components. The presented model can be used for various scientific questions, such as studies of natural variability and ocean–atmosphere interactions.
Skyler Graap and Colin M. Zarzycki
Geosci. Model Dev., 17, 1627–1650, https://doi.org/10.5194/gmd-17-1627-2024, https://doi.org/10.5194/gmd-17-1627-2024, 2024
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A key target for improving climate models is how low, bright clouds are predicted over tropical oceans, since they have important consequences for the Earth's energy budget. A climate model has been updated to improve the physical realism of the treatment of how momentum is moved up and down in the atmosphere. By comparing this updated model to real-world observations from balloon launches, it can be shown to more accurately depict atmospheric structure in trade-wind areas close to the Equator.
Marika M. Holland, Cecile Hannay, John Fasullo, Alexandra Jahn, Jennifer E. Kay, Michael Mills, Isla R. Simpson, William Wieder, Peter Lawrence, Erik Kluzek, and David Bailey
Geosci. Model Dev., 17, 1585–1602, https://doi.org/10.5194/gmd-17-1585-2024, https://doi.org/10.5194/gmd-17-1585-2024, 2024
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Climate evolves in response to changing forcings, as prescribed in simulations. Models and forcings are updated over time to reflect new understanding. This makes it difficult to attribute simulation differences to either model or forcing changes. Here we present new simulations which enable the separation of model structure and forcing influence between two widely used simulation sets. Results indicate a strong influence of aerosol emission uncertainty on historical climate.
Rongyun Tang, Mingzhou Jin, Jiafu Mao, Daniel M. Ricciuto, Anping Chen, and Yulong Zhang
Geosci. Model Dev., 17, 1525–1542, https://doi.org/10.5194/gmd-17-1525-2024, https://doi.org/10.5194/gmd-17-1525-2024, 2024
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Carbon-rich boreal peatlands are at risk of burning. The reproducibility and predictability of rare peatland fire events are investigated by constructing a two-step error-correcting machine learning framework to tackle such complex systems. Fire occurrence and impacts are highly predictable with our approach. Factor-controlling simulations revealed that temperature, moisture, and freeze–thaw cycles control boreal peatland fires, indicating thermal impacts on causing peat fires.
Allison B. Collow, Peter R. Colarco, Arlindo M. da Silva, Virginie Buchard, Huisheng Bian, Mian Chin, Sampa Das, Ravi Govindaraju, Dongchul Kim, and Valentina Aquila
Geosci. Model Dev., 17, 1443–1468, https://doi.org/10.5194/gmd-17-1443-2024, https://doi.org/10.5194/gmd-17-1443-2024, 2024
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The GOCART aerosol module within the Goddard Earth Observing System recently underwent a major refactoring and update to the representation of physical processes. Code changes that were included in GOCART Second Generation (GOCART-2G) are documented, and we establish a benchmark simulation that is to be used for future development of the system. The 4-year benchmark simulation was evaluated using in situ and spaceborne measurements to develop a baseline and prioritize future development.
Oksana Guba, Mark A. Taylor, Peter A. Bosler, Christopher Eldred, and Peter H. Lauritzen
Geosci. Model Dev., 17, 1429–1442, https://doi.org/10.5194/gmd-17-1429-2024, https://doi.org/10.5194/gmd-17-1429-2024, 2024
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We want to reduce errors in the moist energy budget in numerical atmospheric models. We study a few common assumptions and mechanisms that are used for the moist physics. Some mechanisms are more consistent with the underlying equations. Separately, we study how assumptions about models' thermodynamics affect the modeled energy of precipitation. We also explain how to conserve energy in the moist physics for nonhydrostatic models.
Konstantin Aiteew, Jarno Rouhiainen, Claas Nendel, and René Dechow
Geosci. Model Dev., 17, 1349–1385, https://doi.org/10.5194/gmd-17-1349-2024, https://doi.org/10.5194/gmd-17-1349-2024, 2024
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This study evaluated the biogeochemical model MONICA and its performance in simulating soil organic carbon changes. MONICA can reproduce plant growth, carbon and nitrogen dynamics, soil water and temperature. The model results were compared with five established carbon turnover models. With the exception of certain sites, adequate reproduction of soil organic carbon stock change rates was achieved. The MONICA model was capable of performing similar to or even better than the other models.
Jianfeng Li, Kai Zhang, Taufiq Hassan, Shixuan Zhang, Po-Lun Ma, Balwinder Singh, Qiyang Yan, and Huilin Huang
Geosci. Model Dev., 17, 1327–1347, https://doi.org/10.5194/gmd-17-1327-2024, https://doi.org/10.5194/gmd-17-1327-2024, 2024
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By comparing E3SM simulations with and without regional refinement, we find that model horizontal grid spacing considerably affects the simulated aerosol mass budget, aerosol–cloud interactions, and the effective radiative forcing of anthropogenic aerosols. The study identifies the critical physical processes strongly influenced by model resolution. It also highlights the benefit of applying regional refinement in future modeling studies at higher or even convection-permitting resolutions.
Bernd Funke, Thierry Dudok de Wit, Ilaria Ermolli, Margit Haberreiter, Doug Kinnison, Daniel Marsh, Hilde Nesse, Annika Seppälä, Miriam Sinnhuber, and Ilya Usoskin
Geosci. Model Dev., 17, 1217–1227, https://doi.org/10.5194/gmd-17-1217-2024, https://doi.org/10.5194/gmd-17-1217-2024, 2024
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We outline a road map for the preparation of a solar forcing dataset for the upcoming Phase 7 of the Coupled Model Intercomparison Project (CMIP7), considering the latest scientific advances made in the reconstruction of solar forcing and in the understanding of climate response while also addressing the issues that were raised during CMIP6.
Fiona Raphaela Spuler, Jakob Benjamin Wessel, Edward Comyn-Platt, James Varndell, and Chiara Cagnazzo
Geosci. Model Dev., 17, 1249–1269, https://doi.org/10.5194/gmd-17-1249-2024, https://doi.org/10.5194/gmd-17-1249-2024, 2024
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Before using climate models to study the impacts of climate change, bias adjustment is commonly applied to the models to ensure that they correspond with observations at a local scale. However, this can introduce undesirable distortions into the climate model. In this paper, we present an open-source python package called ibicus to enable the comparison and detailed evaluation of bias adjustment methods, facilitating their transparent and rigorous application.
Donghui Xu, Gautam Bisht, Zeli Tan, Chang Liao, Tian Zhou, Hong-Yi Li, and L. Ruby Leung
Geosci. Model Dev., 17, 1197–1215, https://doi.org/10.5194/gmd-17-1197-2024, https://doi.org/10.5194/gmd-17-1197-2024, 2024
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We aim to disentangle the hydrological and hydraulic controls on streamflow variability in a fully coupled earth system model. We found that calibrating only one process (i.e., traditional calibration procedure) will result in unrealistic parameter values and poor performance of the water cycle, while the simulated streamflow is improved. To address this issue, we further proposed a two-step calibration procedure to reconcile the impacts from hydrological and hydraulic processes on streamflow.
Douglas McNeall, Eddy Robertson, and Andy Wiltshire
Geosci. Model Dev., 17, 1059–1089, https://doi.org/10.5194/gmd-17-1059-2024, https://doi.org/10.5194/gmd-17-1059-2024, 2024
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We can run simulations of the land surface and carbon cycle, using computer models to help us understand and predict climate change and its impacts. These simulations are not perfect reproductions of the real land surface, and that can make them less effective tools. We use new statistical and computational techniques to help us understand how different our models are from the real land surface, how to make them more realistic, and how well we can simulate past and future climate.
Genevieve L. Clow, Nicole S. Lovenduski, Michael N. Levy, Keith Lindsay, and Jennifer E. Kay
Geosci. Model Dev., 17, 975–995, https://doi.org/10.5194/gmd-17-975-2024, https://doi.org/10.5194/gmd-17-975-2024, 2024
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Satellite observations of chlorophyll allow us to study marine phytoplankton on a global scale; yet some of these observations are missing due to clouds and other issues. To investigate the impact of missing data, we developed a satellite simulator for chlorophyll in an Earth system model. We found that missing data can impact the global mean chlorophyll by nearly 20 %. The simulated observations provide a more direct comparison to real-world data and can be used to improve model validation.
Jiateng Guo, Xuechuang Xu, Luyuan Wang, Xulei Wang, Lixin Wu, Mark Jessell, Vitaliy Ogarko, Zhibin Liu, and Yufei Zheng
Geosci. Model Dev., 17, 957–973, https://doi.org/10.5194/gmd-17-957-2024, https://doi.org/10.5194/gmd-17-957-2024, 2024
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This study proposes a semi-supervised learning algorithm using pseudo-labels for 3D geological modelling. We establish a 3D geological model using borehole data from a complex real urban local survey area in Shenyang and make an uncertainty analysis of this model. The method effectively expands the sample space, which is suitable for geomodelling and uncertainty analysis from boreholes. The modelling results perform well in terms of spatial morphology and geological semantics.
Shih-Wei Wei, Mariusz Pagowski, Arlindo da Silva, Cheng-Hsuan Lu, and Bo Huang
Geosci. Model Dev., 17, 795–813, https://doi.org/10.5194/gmd-17-795-2024, https://doi.org/10.5194/gmd-17-795-2024, 2024
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This study describes the modeling system and the evaluation results for the first prototype version of a global aerosol reanalysis product at NOAA, prototype NOAA Aerosol ReAnalysis version 1.0 (pNARA v1.0). We evaluated pNARA v1.0 against independent datasets and compared it with other reanalyses. We identified deficiencies in the system (both in the forecast model and in the data assimilation system) and the uncertainties that exist in our reanalysis.
Emma Howard, Chun-Hsu Su, Christian Stassen, Rajashree Naha, Harvey Ye, Acacia Pepler, Samuel S. Bell, Andrew J. Dowdy, Simon O. Tucker, and Charmaine Franklin
Geosci. Model Dev., 17, 731–757, https://doi.org/10.5194/gmd-17-731-2024, https://doi.org/10.5194/gmd-17-731-2024, 2024
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The BARPA-R modelling configuration has been developed to produce high-resolution climate hazard projections within the Australian region. When using boundary driving data from quasi-observed historical conditions, BARPA-R shows good performance with errors generally on par with reanalysis products. BARPA-R also captures trends, known modes of climate variability, large-scale weather processes, and multivariate relationships.
Deepeshkumar Jain, Suryachandra A. Rao, Ramu A. Dandi, Prasanth A. Pillai, Ankur Srivastava, Maheswar Pradhan, and Kiran V. Gangadharan
Geosci. Model Dev., 17, 709–729, https://doi.org/10.5194/gmd-17-709-2024, https://doi.org/10.5194/gmd-17-709-2024, 2024
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The present paper discusses and evaluates the new Monsoon Mission Coupled Forecast System model (MMCFS) version 2.0 which upgrades the currently operational MMCFS v1.0 at the Indian Meteorological Department, India. The individual model components have been substantially upgraded independently by their respective scientific groups. MMCFS v2.0 includes these upgrades in the operational coupled model. The new model shows significant skill improvement in simulating the Indian monsoon.
Nathan Beech, Thomas Rackow, Tido Semmler, and Thomas Jung
Geosci. Model Dev., 17, 529–543, https://doi.org/10.5194/gmd-17-529-2024, https://doi.org/10.5194/gmd-17-529-2024, 2024
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Cost-reducing modeling strategies are applied to high-resolution simulations of the Southern Ocean in a changing climate. They are evaluated with respect to observations and traditional, lower-resolution modeling methods. The simulations effectively reproduce small-scale ocean flows seen in satellite data and are largely consistent with traditional model simulations after 4 °C of warming. Small-scale flows are found to intensify near bathymetric features and to become more variable.
Karl E. Taylor
Geosci. Model Dev., 17, 415–430, https://doi.org/10.5194/gmd-17-415-2024, https://doi.org/10.5194/gmd-17-415-2024, 2024
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Remapping gridded data in a way that preserves the conservative properties of the climate system can be essential in coupling model components and for accurate assessment of the system’s energy and mass constituents. Remapping packages capable of handling a wide variety of grids can, for some common grids, calculate remapping weights that are somewhat inaccurate. Correcting for these errors, guidelines are provided to ensure conservation when the weights are used in practice.
Pedro M. M. Soares, Frederico Johannsen, Daniela C. A. Lima, Gil Lemos, Virgílio A. Bento, and Angelina Bushenkova
Geosci. Model Dev., 17, 229–259, https://doi.org/10.5194/gmd-17-229-2024, https://doi.org/10.5194/gmd-17-229-2024, 2024
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This study uses deep learning (DL) to downscale global climate models for the Iberian Peninsula. Four DL architectures were evaluated and trained using historical climate data and then used to downscale future projections from the global models. These show agreement with the original models and reveal a warming of 2 ºC to 6 ºC, along with decreasing precipitation in western Iberia after 2040. This approach offers key regional climate change information for adaptation strategies in the region.
Abhiraj Bishnoi, Olaf Stein, Catrin I. Meyer, René Redler, Norbert Eicker, Helmuth Haak, Lars Hoffmann, Daniel Klocke, Luis Kornblueh, and Estela Suarez
Geosci. Model Dev., 17, 261–273, https://doi.org/10.5194/gmd-17-261-2024, https://doi.org/10.5194/gmd-17-261-2024, 2024
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We enabled the weather and climate model ICON to run in a high-resolution coupled atmosphere–ocean setup on the JUWELS supercomputer, where the ocean and the model I/O runs on the CPU Cluster, while the atmosphere is running simultaneously on GPUs. Compared to a simulation performed on CPUs only, our approach reduces energy consumption by 45 % with comparable runtimes. The experiments serve as preparation for efficient computing of kilometer-scale climate models on future supercomputing systems.
Diana R. Gergel, Steven B. Malevich, Kelly E. McCusker, Emile Tenezakis, Michael T. Delgado, Meredith A. Fish, and Robert E. Kopp
Geosci. Model Dev., 17, 191–227, https://doi.org/10.5194/gmd-17-191-2024, https://doi.org/10.5194/gmd-17-191-2024, 2024
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The freely available Global Downscaled Projections for Climate Impacts Research (GDPCIR) dataset gives researchers a new tool for studying how future climate will evolve at a local or regional level, corresponding to the latest global climate model simulations prepared as part of the UN Intergovernmental Panel on Climate Change’s Sixth Assessment Report. Those simulations represent an enormous advance in quality, detail, and scope that GDPCIR translates to the local level.
Yuying Zhang, Shaocheng Xie, Yi Qin, Wuyin Lin, Jean-Christophe Golaz, Xue Zheng, Po-Lun Ma, Yun Qian, Qi Tang, Christopher R. Terai, and Meng Zhang
Geosci. Model Dev., 17, 169–189, https://doi.org/10.5194/gmd-17-169-2024, https://doi.org/10.5194/gmd-17-169-2024, 2024
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We performed systematic evaluation of clouds simulated in the Energy
Exascale Earth System Model (E3SMv2) to document model performance and understand what updates in E3SMv2 have caused changes in clouds from E3SMv1 to E3SMv2. We find that stratocumulus clouds along the subtropical west coast of continents are dramatically improved, primarily due to the retuning done in CLUBB. This study offers additional insights into clouds simulated in E3SMv2 and will benefit future E3SM developments.
Exascale Earth System Model (E3SMv2) to document model performance and understand what updates in E3SMv2 have caused changes in clouds from E3SMv1 to E3SMv2. We find that stratocumulus clouds along the subtropical west coast of continents are dramatically improved, primarily due to the retuning done in CLUBB. This study offers additional insights into clouds simulated in E3SMv2 and will benefit future E3SM developments.
Ting Sun, Hamidreza Omidvar, Zhenkun Li, Ning Zhang, Wenjuan Huang, Simone Kotthaus, Helen C. Ward, Zhiwen Luo, and Sue Grimmond
Geosci. Model Dev., 17, 91–116, https://doi.org/10.5194/gmd-17-91-2024, https://doi.org/10.5194/gmd-17-91-2024, 2024
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For the first time, we coupled a state-of-the-art urban land surface model – Surface Urban Energy and Water Scheme (SUEWS) – with the widely-used Weather Research and Forecasting (WRF) model, creating an open-source tool that may benefit multiple applications. We tested our new system at two UK sites and demonstrated its potential by examining how human activities in various areas of Greater London influence local weather conditions.
Katja Frieler, Jan Volkholz, Stefan Lange, Jacob Schewe, Matthias Mengel, María del Rocío Rivas López, Christian Otto, Christopher P. O. Reyer, Dirk Nikolaus Karger, Johanna T. Malle, Simon Treu, Christoph Menz, Julia L. Blanchard, Cheryl S. Harrison, Colleen M. Petrik, Tyler D. Eddy, Kelly Ortega-Cisneros, Camilla Novaglio, Yannick Rousseau, Reg A. Watson, Charles Stock, Xiao Liu, Ryan Heneghan, Derek Tittensor, Olivier Maury, Matthias Büchner, Thomas Vogt, Tingting Wang, Fubao Sun, Inga J. Sauer, Johannes Koch, Inne Vanderkelen, Jonas Jägermeyr, Christoph Müller, Sam Rabin, Jochen Klar, Iliusi D. Vega del Valle, Gitta Lasslop, Sarah Chadburn, Eleanor Burke, Angela Gallego-Sala, Noah Smith, Jinfeng Chang, Stijn Hantson, Chantelle Burton, Anne Gädeke, Fang Li, Simon N. Gosling, Hannes Müller Schmied, Fred Hattermann, Jida Wang, Fangfang Yao, Thomas Hickler, Rafael Marcé, Don Pierson, Wim Thiery, Daniel Mercado-Bettín, Robert Ladwig, Ana Isabel Ayala-Zamora, Matthew Forrest, and Michel Bechtold
Geosci. Model Dev., 17, 1–51, https://doi.org/10.5194/gmd-17-1-2024, https://doi.org/10.5194/gmd-17-1-2024, 2024
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Our paper provides an overview of all observational climate-related and socioeconomic forcing data used as input for the impact model evaluation and impact attribution experiments within the third round of the Inter-Sectoral Impact Model Intercomparison Project. The experiments are designed to test our understanding of observed changes in natural and human systems and to quantify to what degree these changes have already been induced by climate change.
Jinkai Tan, Qiqiao Huang, and Sheng Chen
Geosci. Model Dev., 17, 53–69, https://doi.org/10.5194/gmd-17-53-2024, https://doi.org/10.5194/gmd-17-53-2024, 2024
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This study presents a deep learning architecture, multi-scale feature fusion (MFF), to improve the forecast skills of precipitations especially for heavy precipitations. MFF uses multi-scale receptive fields so that the movement features of precipitation systems are well captured. MFF uses the mechanism of discrete probability to reduce uncertainties and forecast errors so that heavy precipitations are produced.
Robert E. Kopp, Gregory G. Garner, Tim H. J. Hermans, Shantenu Jha, Praveen Kumar, Alexander Reedy, Aimée B. A. Slangen, Matteo Turilli, Tamsin L. Edwards, Jonathan M. Gregory, George Koubbe, Anders Levermann, Andre Merzky, Sophie Nowicki, Matthew D. Palmer, and Chris Smith
Geosci. Model Dev., 16, 7461–7489, https://doi.org/10.5194/gmd-16-7461-2023, https://doi.org/10.5194/gmd-16-7461-2023, 2023
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Future sea-level rise projections exhibit multiple forms of uncertainty, all of which must be considered by scientific assessments intended to inform decision-making. The Framework for Assessing Changes To Sea-level (FACTS) is a new software package intended to support assessments of global mean, regional, and extreme sea-level rise. An early version of FACTS supported the development of the IPCC Sixth Assessment Report sea-level projections.
Gregory Duveiller, Mark Pickering, Joaquin Muñoz-Sabater, Luca Caporaso, Souhail Boussetta, Gianpaolo Balsamo, and Alessandro Cescatti
Geosci. Model Dev., 16, 7357–7373, https://doi.org/10.5194/gmd-16-7357-2023, https://doi.org/10.5194/gmd-16-7357-2023, 2023
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Some of our best tools to describe the state of the land system, including the intensity of heat waves, have a problem. The model currently assumes that the number of leaves in ecosystems always follows the same cycle. By using satellite observations of when leaves are present, we show that capturing the yearly changes in this cycle is important to avoid errors in estimating surface temperature. We show that this has strong implications for our capacity to describe heat waves across Europe.
Neil C. Swart, Torge Martin, Rebecca Beadling, Jia-Jia Chen, Christopher Danek, Matthew H. England, Riccardo Farneti, Stephen M. Griffies, Tore Hattermann, Judith Hauck, F. Alexander Haumann, André Jüling, Qian Li, John Marshall, Morven Muilwijk, Andrew G. Pauling, Ariaan Purich, Inga J. Smith, and Max Thomas
Geosci. Model Dev., 16, 7289–7309, https://doi.org/10.5194/gmd-16-7289-2023, https://doi.org/10.5194/gmd-16-7289-2023, 2023
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Current climate models typically do not include full representation of ice sheets. As the climate warms and the ice sheets melt, they add freshwater to the ocean. This freshwater can influence climate change, for example by causing more sea ice to form. In this paper we propose a set of experiments to test the influence of this missing meltwater from Antarctica using multiple different climate models.
Christina Asmus, Peter Hoffmann, Joni-Pekka Pietikäinen, Jürgen Böhner, and Diana Rechid
Geosci. Model Dev., 16, 7311–7337, https://doi.org/10.5194/gmd-16-7311-2023, https://doi.org/10.5194/gmd-16-7311-2023, 2023
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Irrigation modifies the land surface and soil conditions. The effects can be quantified using numerical climate models. Our study introduces a new irrigation parameterization, which simulates the effects of irrigation on land, atmosphere, and vegetation. We applied the parameterization and evaluated the results in terms of their physical consistency. We found an improvement in the model results in the 2 m temperature representation in comparison with observational data for our study.
Nanhong Xie, Tijian Wang, Xiaodong Xie, Xu Yue, Filippo Giorgi, Qian Zhang, Danyang Ma, Rong Song, Baiyao Xu, Shu Li, Bingliang Zhuang, Mengmeng Li, Min Xie, Natalya Andreeva Kilifarska, Georgi Gadzhev, and Reneta Dimitrova
EGUsphere, https://doi.org/10.5194/egusphere-2023-1733, https://doi.org/10.5194/egusphere-2023-1733, 2023
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For the first time, we coupled a regional climate chemistry model RegCM-Chem with a dynamic vegetation model YIBs to create a regional climate-chemistry-ecology model RegCM-Chem-YIBs. We applied it to simulate climatic, chemical and ecological parameters in East Asia and fully validated it on a variety of observational data. The research results show that RegCM-Chem-YIBs model is a valuable tool for studying terrestrial carbon cycle, atmospheric chemistry, and climate change in regional scale.
Michael Meier and Christof Bigler
Geosci. Model Dev., 16, 7171–7201, https://doi.org/10.5194/gmd-16-7171-2023, https://doi.org/10.5194/gmd-16-7171-2023, 2023
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We analyzed >2.3 million calibrations and 39 million projections of leaf coloration models, considering 21 models, 5 optimization algorithms, ≥7 sampling procedures, and 26 climate scenarios. Models based on temperature, day length, and leaf unfolding performed best, especially when calibrated with generalized simulated annealing and systematically balanced or stratified samples. Projected leaf coloration shifts between −13 and +20 days by 2080–2099.
Katharina Gallmeier, J. Xavier Prochaska, Peter Cornillon, Dimitris Menemenlis, and Madolyn Kelm
Geosci. Model Dev., 16, 7143–7170, https://doi.org/10.5194/gmd-16-7143-2023, https://doi.org/10.5194/gmd-16-7143-2023, 2023
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This paper introduces an approach to evaluate numerical models of ocean circulation. We compare the structure of satellite-derived sea surface temperature anomaly (SSTa) instances determined by a machine learning algorithm at 10–80 km scales to those output by a high-resolution MITgcm run. The simulation over much of the ocean reproduces the observed distribution of SSTa patterns well. This general agreement, alongside a few notable exceptions, highlights the potential of this approach.
Jiachen Lu, Negin Nazarian, Melissa Hart, Scott Krayenhoff, and Alberto Martilli
EGUsphere, https://doi.org/10.5194/egusphere-2023-2811, https://doi.org/10.5194/egusphere-2023-2811, 2023
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This study enhances urban canopy models by refining key assumptions. Simulations for various urban scenarios indicate discrepancies in turbulent transport efficiency for flow properties. We propose two modifications that involve characterizing diffusion coefficients for momentum and turbulent kinetic energy separately and introducing a physics-based "mass flux" term. These adjustments enhance the model's performance, offering more reliable temperature and surface flux estimates.
Angus Fotherby, Harold J. Bradbury, Jennifer L. Druhan, and Alexandra V. Turchyn
Geosci. Model Dev., 16, 7059–7074, https://doi.org/10.5194/gmd-16-7059-2023, https://doi.org/10.5194/gmd-16-7059-2023, 2023
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We demonstrate how, given a simulation of fluid and rock interacting, we can emulate the system using machine learning. This means that, for a given initial condition, we can predict the final state, avoiding the simulation step once the model has been trained. We present a workflow for applying this approach to any fluid–rock simulation and showcase two applications to different fluid–rock simulations. This approach has applications for improving model development and sensitivity analyses.
Rose V. Palermo, J. Taylor Perron, Jason M. Soderblom, Samuel P. D. Birch, Alexander G. Hayes, and Andrew D. Ashton
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-223, https://doi.org/10.5194/gmd-2023-223, 2023
Revised manuscript accepted for GMD
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Models of rocky coastal erosion help us understand the controls on coastal morphology and evolution. In this paper, we present a simplified model of coastline erosion by either uniform erosion processes where coastline erosion is constant or wave-driven erosion where coastline erosion is a function of the wave power. This model can be used to evaluate how coastline changes reflect climate, sea level history, material properties, and the relative influence of different erosional processes.
Yaqi Wang, Lanning Wang, Juan Feng, Zhenya Song, Qizhong Wu, and Huaqiong Cheng
Geosci. Model Dev., 16, 6857–6873, https://doi.org/10.5194/gmd-16-6857-2023, https://doi.org/10.5194/gmd-16-6857-2023, 2023
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In this study, to noticeably improve precipitation simulation in steep mountains, we propose a sub-grid parameterization scheme for the topographic vertical motion in CAM5-SE to revise the original vertical velocity by adding the topographic vertical motion. The dynamic lifting effect of topography is extended from the lowest layer to multiple layers, thus improving the positive deviations of precipitation simulation in high-altitude regions and negative deviations in low-altitude regions.
Haoyue Zuo, Yonggang Liu, Gaojun Li, Zhifang Xu, Liang Zhao, Zhengtang Guo, and Yongyun Hu
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-199, https://doi.org/10.5194/gmd-2023-199, 2023
Preprint under review for GMD
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Compared to the silicate weathering fluxes measured at large river basins, the current models tend to systematically overestimate the fluxes over the tropical region, which leads to an overestimation of the global total weathering flux. The most possible cause of such bias is found to be the overestimation of tropical surface erosion, which indicates that the tropical vegetation likely slows down physical erosion significantly. We propose a way of taking this effect into account in models.
Jon Seddon, Ag Stephens, Matthew S. Mizielinski, Pier Luigi Vidale, and Malcolm J. Roberts
Geosci. Model Dev., 16, 6689–6700, https://doi.org/10.5194/gmd-16-6689-2023, https://doi.org/10.5194/gmd-16-6689-2023, 2023
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The PRIMAVERA project aimed to develop a new generation of advanced global climate models. The large volume of data generated was uploaded to a central analysis facility (CAF) and was analysed by 100 PRIMAVERA scientists there. We describe how the PRIMAVERA project used the CAF's facilities to enable users to analyse this large dataset. We believe that similar, multi-institute, big-data projects could also use a CAF to efficiently share, organise and analyse large volumes of data.
Maria-Theresia Pelz, Markus Schartau, Christopher J. Somes, Vanessa Lampe, and Thomas Slawig
Geosci. Model Dev., 16, 6609–6634, https://doi.org/10.5194/gmd-16-6609-2023, https://doi.org/10.5194/gmd-16-6609-2023, 2023
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Kernel density estimators (KDE) approximate the probability density of a data set without the assumption of an underlying distribution. We used the solution of the diffusion equation, and a new approximation of the optimal smoothing parameter build on two pilot estimation steps, to construct such a KDE best suited for typical characteristics of geoscientific data. The resulting KDE is insensitive to noise and well resolves multimodal data structures as well as boundary-close data.
Benjamin S. Grandey, Zhi Yang Koh, Dhrubajyoti Samanta, Benjamin P. Horton, Justin Dauwels, and Lock Yue Chew
Geosci. Model Dev., 16, 6593–6608, https://doi.org/10.5194/gmd-16-6593-2023, https://doi.org/10.5194/gmd-16-6593-2023, 2023
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Global climate models are susceptible to spurious trends known as drift. Fortunately, drift can be corrected when analysing data produced by models. To explore the uncertainty associated with drift correction, we develop a new method: Monte Carlo drift correction. For historical simulations of thermosteric sea level rise, drift uncertainty is relatively large. When analysing data susceptible to drift, researchers should consider drift uncertainty.
Cited articles
Ågren, G. I.: The C : N : P stoichiometry of autotrophs – theory and
observations, Ecol. Lett., 7, 185–191,
https://doi.org/10.1111/j.1461-0248.2004.00567.x, 2004. a
Anderson, L. A. and Sarmiento, J. L.: Redfield ratios of remineralization
determined by nutrient data analysis, Global Biogeochem. Cycles, 8, 65–80,
https://doi.org/10.1029/93GB03318, 1994. a
Arora, V. K., Katavouta, A., Williams, R. G., Jones, C. D., Brovkin, V., Friedlingstein, P., Schwinger, J., Bopp, L., Boucher, O., Cadule, P., Chamberlain, M. A., Christian, J. R., Delire, C., Fisher, R. A., Hajima, T., Ilyina, T., Joetzjer, E., Kawamiya, M., Koven, C. D., Krasting, J. P., Law, R. M., Lawrence, D. M., Lenton, A., Lindsay, K., Pongratz, J., Raddatz, T., Séférian, R., Tachiiri, K., Tjiputra, J. F., Wiltshire, A., Wu, T., and Ziehn, T.: Carbon–concentration and carbon–climate feedbacks in CMIP6 models and their comparison to CMIP5 models, Biogeosciences, 17, 4173–4222, https://doi.org/10.5194/bg-17-4173-2020, 2020. a
Arteaga, L., Pahlow, M., and Oschlies, A.: Global patterns of phytoplankton
nutrient and light colimitation inferred from an optimality-based model,
Global Biogeochem. Cycles, 28, 648–661, https://doi.org/10.1002/2013GB004668, 2014. a
Arteaga, L., Pahlow, M., and Oschlies, A.: Modelled Chl:C ratio and derived
estimates of phytoplankton carbon biomass and its contribution to total
particulate organic carbon in the global surface ocean, Global Biogeochem.
Cycles, 30, 1791–1810, https://doi.org/10.1002/2016GB005458, 2016. a, b
Behrenfeld, M. J. and Falkowski, P. G.: Photosynthetic rates derived from
satellite-based chlorophyll concentration, Limnol. Oceanogr., 42, 1–20,
https://doi.org/10.4319/lo.1997.42.1.0001, 1997. a
Bopp, L., Resplandy, L., Orr, J. C., Doney, S. C., Dunne, J. P., Gehlen, M., Halloran, P., Heinze, C., Ilyina, T., Séférian, R., Tjiputra, J., and Vichi, M.: Multiple stressors of ocean ecosystems in the 21st century: projections with CMIP5 models, Biogeosciences, 10, 6225–6245, https://doi.org/10.5194/bg-10-6225-2013, 2013. a
Carr, M.-E., Friedrichs, M. A., Schmeltz, M., Noguchi Aita, M., Antoine, D., Arrigo, K. R., Asanuma, I., Aumont, O., Barber, R., Behrenfeld, M., Bidigare, R., Buitenhuis, E. T., Campbell, J., Ciotti, A., Dierssen, H., Dowell, M., Dunne, J., Esaias, W., Gentili, B., Gregg, W., Groom, S., Hoepffner, N., Ishizaka, J., Kameda, T., Le Quéré, C., Lohrenz, S., Marra, J., Mélin, F., Moore, K., Morel, A., Reddy, T. E., Ryan, J., Scardi, M., Smyth, T., Turpie, K., Tilstone, G., Waters, K., and Yamanaka, Y.: A
comparison of global estimates of marine primary production from ocean color,
Deep-Sea Res. Pt. II, 53, 741–770, https://doi.org/10.1016/j.dsr2.2006.01.028, 2006. a
Chen, B. and Smith, S. L.: Optimality-based approach for computationally
efficient modeling of phytoplankton growth, chlorophyll-to-carbon, and
nitrogen-to-carbon ratios, Ecol. Model., 385, 197–212,
https://doi.org/10.1016/j.ecolmodel.2018.08.001, 2018. a
Danabasoglu, G., Lamarque, J.-F., Bacmeister, J., Bailey, D. A., DuVivier, A. K., Edwards, J., Emmons, L. K., Fasullo, J., Garcia, R., Gettelman, A., Hannay, C., Holland, M. M., Large, W. G., Lauritzen, P. H., Lawrence, D. M., Lenaerts, J. T. M., Lindsay, K., Lipscomb, W. H., Mills, M. J., Neale, R., Oleson, K. W., Otto-Bliesner, B., Phillips, A. S., Sacks, W., Tilmes, S., van Kampenhout, L., Vertenstein, M., Bertini, A., Dennis, J., Deser, C., Fischer, C., Fox-Kemper, B., Kay, J. E., Kinnison, D., Kushner, P. J., Larson, V. E., Long, M. C., Mickelson, S., Moore, J. K., Nienhouse, E., Polvani, L., Rasch, P. J., and Strand, W. G.: The Community Earth System Model Version 2 (CESM2), J. Adv.
Model. Earth Syst., 12, e2019MS001916, https://doi.org/10.1029/2019ms001916, 2020. a
Deutsch, C., Sarmiento, J. L., Sigman, D. M., Gruber, N., and Dunne, J. P.:
Spatial coupling of nitrogen inputs and losses in the ocean, Nature, 445,
163–167, https://doi.org/10.1038/nature05392, 2007. a
DeVries, T. and Weber, T.: The export and fate of organic matter in the ocean:
New constraints from combining satellite and oceanographic tracer
observations, Global Biogeochem. Cycles, 31, 535–555,
https://doi.org/10.1002/2016GB005551, 2017. a
DeVries, T., Deutsch, C., Primeau, F., Chang, B., and Devol, A.: Global rates
of water-column denitrification derived from nitrogen gas measurements,
Nature Geosci., 5, 547–550, https://doi.org/10.1038/ngeo1515, 2012. a
Ducklow, H. W. and Doney, S. C.: What Is the Metabolic State of the
Oligotrophic Ocean? A Debate, Annu. Rev. Mar. Sci., 5, 525–533,
https://doi.org/10.1146/annurev-marine-121211-172331, 2013. a
Dunne, J. P., Armstrong, R. A., Gnanadesikan, A., and Sarmiento, J. L.:
Empirical and mechanistic models for the particle export ratio, Global
Biogeochem. Cycles, 19, GB4026, https://doi.org/10.1029/2004GB002390, 2005. a
Dunne, J. P., John, J. G., Adcroft, A. J., Griffies, S. M., Hallberg, R. W., Shevliakova, E., Stouffer, R. J., Cooke, W., Dunne, K. A., Harrison, M. J., Krasting, J. P., Malyshev, S. L., Milly, P. C. D., Phillipps, P. J., Sentman, L. T., Samuels, B. L., Spelman, M. J., Winton, M., Wittenberg, A. T., and Zadeh, N.: GFDL's ESM2 Global Coupled Climate–Carbon Earth System Models.
Part I: Physical Formulation and Baseline Simulation Characteristics, J.
Climate, 25, 6646–6665, https://doi.org/10.1175/jcli-d-11-00560.1, 2012. a
Eby, M., Zickfeld, K., Montenegro, A., Archer, D., Meissner, K. J., and Weaver,
A. J.: Lifetime of Anthropogenic Climate Change: Millennial Time Scales of
Potential CO2 and Surface Temperature Perturbations, J. Climate, 22,
2501–2511, https://doi.org/10.1175/2008JCLI2554.1, 2009. a, b
Eby, M., Weaver, A. J., Alexander, K., Zickfeld, K., Abe-Ouchi, A., Cimatoribus, A. A., Crespin, E., Drijfhout, S. S., Edwards, N. R., Eliseev, A. V., Feulner, G., Fichefet, T., Forest, C. E., Goosse, H., Holden, P. B., Joos, F., Kawamiya, M., Kicklighter, D., Kienert, H., Matsumoto, K., Mokhov, I. I., Monier, E., Olsen, S. M., Pedersen, J. O. P., Perrette, M., Philippon-Berthier, G., Ridgwell, A., Schlosser, A., Schneider von Deimling, T., Shaffer, G., Smith, R. S., Spahni, R., Sokolov, A. P., Steinacher, M., Tachiiri, K., Tokos, K., Yoshimori, M., Zeng, N., and Zhao, F.: Historical and idealized climate model experiments: an intercomparison of Earth system models of intermediate complexity, Clim. Past, 9, 1111–1140, https://doi.org/10.5194/cp-9-1111-2013, 2013. a
Fernández-Castro, B., Pahlow, M., Mouriño-Carballido, B.,
Marañón, E., and Oschlies, A.: Optimality-based Trichodesmium
Diazotrophy in the North Atlantic Subtropical Gyre, J. Plankton Res., 38,
946–963, https://doi.org/10.1093/plankt/fbw047, 2016. a, b, c, d
Garcia, H. E., Locarnini, R. A., Boyer, T. P., Antonov, J. I., Mishonov, A. V.,
Baranova, O. K., Zweng, M. M., Reagan, J. R., and Johnson, D. R.: Dissolved
Oxygen, Apparent Oxygen Utilization, and Oxygen Saturation, in: World Ocean
Atlas 2013, edited by: Levitus, S., vol. 3, NOAA Atlas NESDIS 75, available at:
http://www.nodc.noaa.gov/OC5/indprod.html (last access: 1 August 2018), 2013a. a, b
Garcia, H. E., Locarnini, R. A., Boyer, T. P., Antonov, J. I., Mishonov, A. V.,
Baranova, O. K., Zweng, M. M., Reagan, J. R., and Johnson, D. R.: Dissolved
Inorganic Nutrients (phosphate, nitrate, silicate), in: World Ocean Atlas
2013, edited by: Levitus, S., vol. 4, NOAA Atlas NESDIS 76, available at:
http://www.nodc.noaa.gov/OC5/indprod.html (last access: 1 August 2018), 2013b. a, b
Getzlaff, J. and Dietze, H.: Effects of increased isopycnal diffusivity
mimicking the unresolved equatorial intermediate current system in an earth
system climate model, Geophys. Res. Lett., 40, 2166–2170,
https://doi.org/10.1002/grl.50419, 2013. a, b
Gismervik, I.: Numerical and functional responses of choreo- and oligotrich
planktonic ciliates, Aquat. Microb. Ecol., 40, 163–173,
https://doi.org/10.3354/ame040163, 2005. a
Gruber, N.: The dynamics of the marine nitrogen cycle and its influence on
atmospheric CO2 variations, in: The Ocean Carbon Cycle and Climate,
edited by: Follows, M. and Oguz, T., pp. 97–148, Kluwer, Dordrecht, 2004. a
Gruber, N. and Sarmiento, J. L.: Global Patterns of marine nitrogen fixation
and denitrification, Global Biogeochem. Cycles, 11, 235–266,
https://doi.org/10.1029/97GB00077, 1997. a
Holling, C. S. and Buckingham, S.: A behavioral model of predator-prey
functional responses, Behav. Sci., 21, 183–195, https://doi.org/10.1002/bs.3830210305,
1976. a
Houlton, B. Z., Wang, Y.-P., Vitousek, P. M., and Field, C. B.: A unifying
framework for dinitrogen fixation in the terrestrial biosphere, Nature, 454,
327–330, https://doi.org/10.1038/nature07028, 2008. a, b, c, d
Hu, C., Lee, Z., and Franz, B.: Chlorophyll a algorithms for oligotrophic
oceans: A novel approach based on three-band reflectance difference, J.
Geophys. Res.-Oceans, 117, C01011, https://doi.org/10.1029/2011jc007395, 2012. a, b
Hülse, D., Arndt, S., Wilson, J. D., Munhoven, G., and Ridgwell, A.:
Understanding the causes and consequences of past marine carbon cycling
variability through models, Earth Sci. Rev., 171, 349–382,
https://doi.org/10.1016/j.earscirev.2017.06.004, 2017. a
Keller, D. P., Lenton, A., Scott, V., Vaughan, N. E., Bauer, N., Ji, D., Jones, C. D., Kravitz, B., Muri, H., and Zickfeld, K.: The Carbon Dioxide Removal Model Intercomparison Project (CDRMIP): rationale and experimental protocol for CMIP6, Geosci. Model Dev., 11, 1133–1160, https://doi.org/10.5194/gmd-11-1133-2018, 2018. a
Key, R., Olsen, A., van Heuven, S., Lauvset, S. K., Velo, A., Lin, X.,
Schirnick, C., Kozyr, A., Tanhua, T., Hoppema, M., Jutterström, S.,
Steinfeldt, R., Jeansson, E., Ishi, M., Perez, F. F., and Suzuki, T.: Global
Ocean Data Analysis Project, Version 2 (GLODAPv2), ORNL/CDIAC-162, NDP-P093,
Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, US
Department of Energy, https://doi.org/10.3334/CDIAC/OTG.NDP093_GLODAPv2, 2015. a, b
Kiørboe, T., Møhlenberg, F., and Hamburger, K.: Bioenergetics of the
planktonic copepod Acartia tonsa: relation between feeding, egg
production and respiration, and composition of specific dynamic action, Mar.
Ecol. Prog. Ser., 26, 85–97, https://doi.org/10.3354/meps026085, 1985. a
Klausmeier, C. A., Litchman, E., Daufresne, T., and Levin, S. A.: Phytoplankton
stoichiometry, Ecol. Res., 23, 479–485, https://doi.org/10.1007/s11284-008-0470-8,
2008. a
Kriest, I.: Calibration of a simple and a complex model of global marine biogeochemistry, Biogeosciences, 14, 4965–4984, https://doi.org/10.5194/bg-14-4965-2017, 2017. a, b
Kriest, I. and Oschlies, A.: MOPS-1.0: towards a model for the regulation of the global oceanic nitrogen budget by marine biogeochemical processes, Geosci. Model Dev., 8, 2929–2957, https://doi.org/10.5194/gmd-8-2929-2015, 2015. a
Krishna, S., Pahlow, M., and Schartau, M.: Comparison of two carbon-nitrogen
regulatory models calibrated with mesocosm data, Ecol. Model., 411, 108711,
https://doi.org/10.1016/j.ecolmodel.2019.05.016, 2019. a
Kvale, K. F., Khatiwala, S., Dietze, H., Kriest, I., and Oschlies, A.: Evaluation of the transport matrix method for simulation of ocean biogeochemical tracers, Geosci. Model Dev., 10, 2425–2445, https://doi.org/10.5194/gmd-10-2425-2017, 2017. a, b
Kwiatkowski, L., Aumont, O., Bopp, L., and Ciais, P.: The Impact of Variable
Phytoplankton Stoichiometry on Projections of Primary Production, Food
Quality, and Carbon Uptake in the Global Ocean, Global Biogeochem. Cycles,
32, 516–528, https://doi.org/10.1002/2017gb005799, 2018. a
Landolfi, A., Dietze, H., Koeve, W., and Oschlies, A.: Overlooked runaway feedback in the marine nitrogen cycle: the vicious cycle, Biogeosciences, 10, 1351–1363, https://doi.org/10.5194/bg-10-1351-2013, 2013. a
Landolfi, A., Kaehler, P., Koeve, W., and Oschlies, A.: Global Marine N2
Fixation Estimates: From Observations to Models, Front. Microbiol., 9, 2112,
https://doi.org/10.3389/fmicb.2018.02112, 2018. a
Laufkötter, C., Vogt, M., Gruber, N., Aita-Noguchi, M., Aumont, O., Bopp, L., Buitenhuis, E., Doney, S. C., Dunne, J., Hashioka, T., Hauck, J., Hirata, T., John, J., Le Quéré, C., Lima, I. D., Nakano, H., Seferian, R., Totterdell, I., Vichi, M., and Völker, C.: Drivers and uncertainties of future global marine primary production in marine ecosystem models, Biogeosciences, 12, 6955–6984, https://doi.org/10.5194/bg-12-6955-2015, 2015. a
Lauvset, S. K., Key, R. M., Olsen, A., van Heuven, S., Velo, A., Lin, X., Schirnick, C., Kozyr, A., Tanhua, T., Hoppema, M., Jutterström, S., Steinfeldt, R., Jeansson, E., Ishii, M., Perez, F. F., Suzuki, T., and Watelet, S.: A new global interior ocean mapped climatology: the 1∘ × 1∘ GLODAP version 2, Earth Syst. Sci. Data, 8, 325–340, https://doi.org/10.5194/essd-8-325-2016, 2016. a, b
Laws, E. A., Falkowski, P. G., Walker O. Smith, J., Ducklow, H., and McCarthy,
J. J.: Temperature effects on export production in the open ocean, Global
Biogeochem. Cycles, 14, 1231–1246, https://doi.org/10.1029/1999GB001229, 2000. a
Lessard, E. J. and Murrell, M. C.: Microzooplankton herbivory and phytoplankton
growth in the northwestern Sargasso Sea, Aquat. Microb. Ecol., 16,
173–188, https://doi.org/10.3354/ame016173, 1998. a
Letscher, R. T. and Moore, J. K.: Preferential remineralization of dissolved
organic phosphorus and non-Redfield DOM dynamics in the global ocean:
Impacts on marine productivity, nitrogen fixation, and carbon export, Global
Biogeochem. Cycles, 29, 2014GB004904, https://doi.org/10.1002/2014GB004904, 2015. a
Löptien, U. and Dietze, H.: Effects of parameter indeterminacy in pelagic
biogeochemical modules of Earth System Models on projections into a warming
future: the scale of the problem, Global Biogeochem. Cycles, 31, 1155–1172,
https://doi.org/10.1002/2017GB005690, 2017. a
Löscher, C. R., Mohr, W., Bange, H. W., and Canfield, D. E.: No nitrogen fixation in the Bay of Bengal?, Biogeosciences, 17, 851–864, https://doi.org/10.5194/bg-17-851-2020, 2020. a
Luo, Y.-W., Doney, S. C., Anderson, L. A., Benavides, M., Berman-Frank, I., Bode, A., Bonnet, S., Boström, K. H., Böttjer, D., Capone, D. G., Carpenter, E. J., Chen, Y. L., Church, M. J., Dore, J. E., Falcón, L. I., Fernández, A., Foster, R. A., Furuya, K., Gómez, F., Gundersen, K., Hynes, A. M., Karl, D. M., Kitajima, S., Langlois, R. J., LaRoche, J., Letelier, R. M., Marañón, E., McGillicuddy Jr., D. J., Moisander, P. H., Moore, C. M., Mouriño-Carballido, B., Mulholland, M. R., Needoba, J. A., Orcutt, K. M., Poulton, A. J., Rahav, E., Raimbault, P., Rees, A. P., Riemann, L., Shiozaki, T., Subramaniam, A., Tyrrell, T., Turk-Kubo, K. A., Varela, M., Villareal, T. A., Webb, E. A., White, A. E., Wu, J., and Zehr, J. P.: Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates, Earth Syst. Sci. Data, 4, 47–73, https://doi.org/10.5194/essd-4-47-2012, 2012. a, b, c, d, e, f
Martiny, A. C., Vrugt, J. A., and Lomas, M. W.: Concentrations and ratios of
particulate organic carbon, nitrogen, and phosphorus in the global ocean,
Sci. Data, 1, 140048, https://doi.org/10.1038/sdata.2014.48, 2014. a, b, c
Matrai, P. A. and Keller, M. D.: Total organic sulfur and
dimethylsulfoniopropionate in marine phytoplankton: intracellular variations,
Mar. Biol., 119, 61–68, https://doi.org/10.1007/BF00350107, 1994. a
Millero, F. J., Fiol, S., Campbell, D. M., and Parilla, G.: Carbon dioxide,
hydrographic, and chemical data obtained during the R/V Hespérides
cruise in the Atlantic Ocean (WOCE section A5, July 14–August
15, 1992), Carbon Dioxide Information Analysis Center, Oak Ridge National
Laboratory, U.S. Department of Energy, https://doi.org/10.3334/CDIAC/otg.ndp074, 2000. a, b
Mills, M. M., Brown, Z. W., Lowry, K. E., van Dijken, G. L., Becker, S., Pal,
S., Benitez-Nelson, C. R., Downer, M. M., Strong, A. L., Swift, J. H.,
Pickart, R. S., and Arrigo, K. R.: Impacts of low phytoplankton
utilization ratios over the Chukchi Shelf, Arctic
Ocean, Deep-Sea Res. Pt. II, 118, 105–121, https://doi.org/10.1016/j.dsr2.2015.02.007,
2015. a, b, c
Monteiro, F. M. and Follows, M. J.: On nitrogen fixation and preferential
remineralization of phosphorus, Geophys. Res. Lett., 39, L06607,
https://doi.org/10.1029/2012GL050897, 2012. a
Monteiro, F. M., Dutkiewicz, S., and Follows, M. J.: Biogeographical controls
on the marine nitrogen fixers, Global Biogeochem. Cycles, 25, GB2003,
https://doi.org/10.1029/2010GB003902, 2011. a
Mulholland, M. R., Bernhardt, P. W., Widner, B. N., Selden, C. R., Chappell,
P. D., Clayton, S., Mannino, A., and Hyde, K.: High Rates of N2 Fixation
in Temperate, Western North Atlantic Coastal Waters Expand the Realm of
Marine Diazotrophy, Global Biogeochem. Cycles, 33, 826–840,
https://doi.org/10.1029/2018gb006130, 2019. a, b
Niemeyer, D., Kemena, T. P., Meissner, K. J., and Oschlies, A.: A model study of warming-induced phosphorus–oxygen feedbacks in open-ocean oxygen minimum zones on millennial timescales, Earth Syst. Dynam., 8, 357–367, https://doi.org/10.5194/esd-8-357-2017, 2017. a, b
Norberg, J.: Biodiversity and ecosystem functioning: A complex adaptive systems
approach, Limnol. Oceanogr., 49, 1269–1277,
https://doi.org/10.4319/lo.2004.49.4_part_2.1269, 2004. a
O'Malley, R.: Ocean Productivity,
available at: http://www.science.oregonstate.edu/ocean.productivity/index.php (last access: 20 June 2019),
2017. a
Oschlies, A., Koeve, W., and Garçon, V.: An Eddy-Permitting Coupled
Physical-Biological Model of the North Atlantic 2. Ecosystem Dynamics and
Comparison With Satellite and JGOFS Local Studies Data, Global Biogeochem.
Cycles, 14, 499–523, 2000. a
Oschlies, A., Duteil, O., Getzlaff, J., Koeve, W., Landolfi, A., and Schmidtko,
S.: Patterns of deoxygenation: sensitivity to natural and anthropogenic
drivers, Phil. Trans. R. Soc. Lond. A, 375, 20160325,
https://doi.org/10.1098/rsta.2016.0325, 2017. a, b
Pahlow, M.: Linking chlorophyll-nutrient dynamics to the Redfield N:C ratio
with a model of optimal phytoplankton growth, Mar. Ecol. Prog. Ser., 287,
33–43, https://doi.org/10.3354/meps287033, 2005. a, b, c
Pahlow, M.: UVic-updates-opem: Optimality-based Plankton Ecosystem Model (OPEM v1.0) for the UVic-ESCM, OceanRep, https://doi.org/10.3289/SW_1_2020, 2020. a
Park, J.-Y., Stock, C. A., Dunne, J. P., Yang, X., and Rosati, A.: Seasonal to
multiannual marine ecosystem prediction with a global Earth system model,
Science, 365, 284–288, https://doi.org/10.1126/science.aav6634, 2019. a, b
Prowe, A. E. F., Visser, A. W., Andersen, K. H., Chiba, S., and Kiørboe, T.:
Biogeography of zooplankton feeding strategy, Limnol. Oceanogr., 64,
661–678, https://doi.org/10.1002/lno.11067, 2018. a
Smith, S. L., Yamanaka, Y., Pahlow, M., and Oschlies, A.: Optimal uptake
kinetics: physiological acclimation explains the pattern of nitrate uptake by
phytoplankton in the ocean, Mar. Ecol. Prog. Ser., 384, 1–12,
https://doi.org/10.3354/meps08022, 2009. a, b, c
Smith, S. L., Pahlow, M., Merico, A., and Wirtz, K. W.: Optimality-based
modeling of planktonic organisms, Limnol. Oceanogr., 56, 2080–2094,
https://doi.org/10.4319/lo.2011.56.6.2080, 2011. a
Smith, S. L., Pahlow, M., Merico, A., Acevedo-Trejos, E., Sasai, Y., Yoshikawa,
C., Sasaoka, K., Fujiki, T., Matsumoto, K., and Honda, M. C.: Flexible
phytoplankton functional type (FlexPFT) model: size-scaling of traits and
optimal growth, J. Plankton Res., 38, 977–992, https://doi.org/10.1093/plankt/fbv038,
2016. a
Strom, S. L.: Growth and grazing rates of the herbivorous dinoflagellate
Gymnodinium sp. from the open subarctic Pacific Ocean, Mar. Ecol.
Prog. Ser., 78, 103–113, https://doi.org/10.3354/meps078103, 1991. a
Strom, S. L., Miller, C. B., and Frost, B. W.: What sets the lower limit to
phytoplankton stocks in high-nitrate, low-chlorophyll regions of the open
ocean?, Mar. Ecol. Prog. Ser., 193, 19–31, https://doi.org/10.3354/meps193019, 2000. a
Su, B., Pahlow, M., and Prowe, F.: The role of microzooplankton trophic
interactions in modelling a suite of mesocosm ecosystems, Ecol. Model., 368,
169–179, https://doi.org/10.1016/j.ecolmodel.2017.11.013, 2018. a, b
Talmy, D., Blackford, J., Hardman-Mountford, N. J., Polimene, L., Follows, M. J., and Geider, R. J.: Flexible C:N ratio enhances metabolism of large phytoplankton when resource supply is intermittent, Biogeosciences, 11, 4881–4895, https://doi.org/10.5194/bg-11-4881-2014, 2014. a
Talmy, D., Martiny, A. C., Hill, C., Hickman, A. E., and Follows, M. J.:
Microzooplankton regulation of surface ocean POC:PON ratios, Global
Biogeochem. Cycles, 30, 311–332, https://doi.org/10.1002/2015GB005273, 2016. a
Taucher, J. and Oschlies, A.: Can we predict the direction of marine primary
production change under global warming?, Geophys. Res. Lett., 38, L02603,
https://doi.org/10.1029/2010GL045934, 2011. a, b
Vichi, M., Pinardi, N., and Masina, S.: A generalized model of pelagic
biogeochemistry.for the global ocean ecosystem. Part I: Theory, J. Mar.
Syst., 64, 89–109, https://doi.org/10.1016/j.jmarsys.2006.03.006, 2007. a
Wang, W.-L., Moore, J. K., Martiny, A. C., and Primeau, F. W.: Convergent
estimates of marine nitrogen fixation, Nature, 566, 205–211,
https://doi.org/10.1038/s41586-019-0911-2, 2019. a, b
Weaver, A., Eby, M., Wiebe, E., Bitz, C., Duffy, P., Ewen, T., Fanning, A.,
Holland, M., MacFadyen, A., Matthews, H., Meissner, K., Saenko, O.,
Schmittner, A., Wang, H., and Yoshimori, M.: The UVic Earth System Climate
Model: Model description, climatology, and applications to past, present and
future climates, Atmos.-Ocean, 39, 361–428,
https://doi.org/10.1080/07055900.2001.9649686, 2001. a, b, c
Short summary
The stoichiometry of marine biotic processes is important for the regulation of atmospheric CO2 and hence the global climate. We replace a simplistic, fixed-stoichiometry plankton module in an Earth system model with an optimal-regulation model with variable stoichiometry. Our model compares better to the observed carbon transfer from the surface to depth and surface nutrient distributions. This work could aid our ability to describe and project the role of marine ecosystems in the Earth system.
The stoichiometry of marine biotic processes is important for the regulation of atmospheric CO2...