Articles | Volume 12, issue 12
https://doi.org/10.5194/gmd-12-5029-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Special issue:
https://doi.org/10.5194/gmd-12-5029-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
| 
03 Dec 2019
Development and technical paper |
| 03 Dec 2019
| 03 Dec 2019
Improving the LPJmL4-SPITFIRE vegetation–fire model for South America using satellite data
Potsdam Institute for Climate Impact Research (PIK), Member of the Leibniz Association, P.O. Box 60 12 03,
14412 Potsdam, Germany
Humboldt Universität zu Berlin, Unter den Linden 6, 10099 Berlin, Germany
Matthias Forkel
Technische Universität Wien, Department of Geodesy and Geoinformation, Gusshausstr. 27–29, 1040 Vienna, Austria
Werner von Bloh
Potsdam Institute for Climate Impact Research (PIK), Member of the Leibniz Association, P.O. Box 60 12 03,
14412 Potsdam, Germany
Boris Sakschewski
Potsdam Institute for Climate Impact Research (PIK), Member of the Leibniz Association, P.O. Box 60 12 03,
14412 Potsdam, Germany
Manoel Cardoso
Instituto Nacional de Pesquisas Espaciais, Av. dos Astronautas, 1.758 – Jardim da Granja, 12227-010, São José dos Campos, São Paulo, Brazil
Mercedes Bustamante
Instituto de Ciências Biologicas, Universidade de Brasília, Campus Universitário Darcy Ribeiro – Asa Norte, 70910-900, Brasília, Brazil
Jürgen Kurths
Potsdam Institute for Climate Impact Research (PIK), Member of the Leibniz Association, P.O. Box 60 12 03,
14412 Potsdam, Germany
Humboldt Universität zu Berlin, Unter den Linden 6, 10099 Berlin, Germany
Kirsten Thonicke
Potsdam Institute for Climate Impact Research (PIK), Member of the Leibniz Association, P.O. Box 60 12 03,
14412 Potsdam, Germany
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Hoontaek Lee, Martin Jung, Nuno Carvalhais, Tina Trautmann, Basil Kraft, Markus Reichstein, Matthias Forkel, and Sujan Koirala
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Hydrol. Earth Syst. Sci., 27, 39–68, https://doi.org/10.5194/hess-27-39-2023, https://doi.org/10.5194/hess-27-39-2023, 2023
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The live fuel moisture content (LFMC) of vegetation canopies is a driver of wildfires. We investigate the relation between LFMC and passive microwave satellite observations of vegetation optical depth (VOD) and develop a method to estimate LFMC from VOD globally. Our global VOD-based estimates of LFMC can be used to investigate drought effects on vegetation and fire risks.
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The impacts of climate change require strategies for climate adaptation. Dynamic global vegetation models (DGVMs) are used to study the effects of multiple processes in the biosphere under climate change. There is a demand for a better computational performance of the models. In this paper, the photosynthesis model in the Lund–Potsdam–Jena managed Land DGVM (4.0.002) was examined. We found a better numerical solution of a nonlinear equation. A significant run time reduction was possible.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
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The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Benjamin Wild, Irene Teubner, Leander Moesinger, Ruxandra-Maria Zotta, Matthias Forkel, Robin van der Schalie, Stephen Sitch, and Wouter Dorigo
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Gross primary production (GPP) describes the conversion of CO2 to carbohydrates and can be seen as a filter for our atmosphere of the primary greenhouse gas CO2. We developed VODCA2GPP, a GPP dataset that is based on vegetation optical depth from microwave remote sensing and temperature. Thus, it is mostly independent from existing GPP datasets and also available in regions with frequent cloud coverage. Analysis showed that VODCA2GPP is able to complement existing state-of-the-art GPP datasets.
Boris Sakschewski, Werner von Bloh, Markus Drüke, Anna Amelia Sörensson, Romina Ruscica, Fanny Langerwisch, Maik Billing, Sarah Bereswill, Marina Hirota, Rafael Silva Oliveira, Jens Heinke, and Kirsten Thonicke
Biogeosciences, 18, 4091–4116, https://doi.org/10.5194/bg-18-4091-2021, https://doi.org/10.5194/bg-18-4091-2021, 2021
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This study shows how local adaptations of tree roots across tropical and sub-tropical South America explain patterns of biome distribution, productivity and evapotranspiration on this continent. By allowing for high diversity of tree rooting strategies in a dynamic global vegetation model (DGVM), we are able to mechanistically explain patterns of mean rooting depth and the effects on ecosystem functions. The approach can advance DGVMs and Earth system models.
Markus Drüke, Werner von Bloh, Stefan Petri, Boris Sakschewski, Sibyll Schaphoff, Matthias Forkel, Willem Huiskamp, Georg Feulner, and Kirsten Thonicke
Geosci. Model Dev., 14, 4117–4141, https://doi.org/10.5194/gmd-14-4117-2021, https://doi.org/10.5194/gmd-14-4117-2021, 2021
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In this study, we couple the well-established and comprehensively validated state-of-the-art dynamic LPJmL5 global vegetation model to the CM2Mc coupled climate model (CM2Mc-LPJmL v.1.0). Several improvements to LPJmL5 were implemented to allow a fully functional biophysical coupling. The new climate model is able to capture important biospheric processes, including fire, mortality, permafrost, hydrological cycling and the the impacts of managed land (crop growth and irrigation).
Alexander Kuhn-Régnier, Apostolos Voulgarakis, Peer Nowack, Matthias Forkel, I. Colin Prentice, and Sandy P. Harrison
Biogeosciences, 18, 3861–3879, https://doi.org/10.5194/bg-18-3861-2021, https://doi.org/10.5194/bg-18-3861-2021, 2021
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Along with current climate, vegetation, and human influences, long-term accumulation of biomass affects fires. Here, we find that including the influence of antecedent vegetation and moisture improves our ability to predict global burnt area. Additionally, the length of the preceding period which needs to be considered for accurate predictions varies across regions.
Irene E. Teubner, Matthias Forkel, Benjamin Wild, Leander Mösinger, and Wouter Dorigo
Biogeosciences, 18, 3285–3308, https://doi.org/10.5194/bg-18-3285-2021, https://doi.org/10.5194/bg-18-3285-2021, 2021
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Vegetation optical depth (VOD), which contains information on vegetation water content and biomass, has been previously shown to be related to gross primary production (GPP). In this study, we analyzed the impact of adding temperature as model input and investigated if this can reduce the previously observed overestimation of VOD-derived GPP. In addition, we could show that the relationship between VOD and GPP largely holds true along a gradient of dry or wet conditions.
Nico Wunderling, Jonathan F. Donges, Jürgen Kurths, and Ricarda Winkelmann
Earth Syst. Dynam., 12, 601–619, https://doi.org/10.5194/esd-12-601-2021, https://doi.org/10.5194/esd-12-601-2021, 2021
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Abhirup Banerjee, Bedartha Goswami, Yoshito Hirata, Deniz Eroglu, Bruno Merz, Jürgen Kurths, and Norbert Marwan
Nonlin. Processes Geophys., 28, 213–229, https://doi.org/10.5194/npg-28-213-2021, https://doi.org/10.5194/npg-28-213-2021, 2021
Gilvan Sampaio, Marília H. Shimizu, Carlos A. Guimarães-Júnior, Felipe Alexandre, Marcelo Guatura, Manoel Cardoso, Tomas F. Domingues, Anja Rammig, Celso von Randow, Luiz F. C. Rezende, and David M. Lapola
Biogeosciences, 18, 2511–2525, https://doi.org/10.5194/bg-18-2511-2021, https://doi.org/10.5194/bg-18-2511-2021, 2021
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Yvonne Jans, Werner von Bloh, Sibyll Schaphoff, and Christoph Müller
Hydrol. Earth Syst. Sci., 25, 2027–2044, https://doi.org/10.5194/hess-25-2027-2021, https://doi.org/10.5194/hess-25-2027-2021, 2021
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Growth of and irrigation water demand on cotton may be challenged by future climate change. To analyze the global cotton production and irrigation water consumption under spatially varying present and future climatic conditions, we use the global terrestrial biosphere model LPJmL. Our simulation results suggest that the beneficial effects of elevated [CO2] on cotton yields overcompensate yield losses from direct climate change impacts, i.e., without the beneficial effect of [CO2] fertilization.
Daniel Tesfay, Larissa Serdukova, Yayun Zheng, Pingyuan Wei, Jinqiao Duan, and Jürgen Kurths
Nonlin. Processes Geophys. Discuss., https://doi.org/10.5194/npg-2020-31, https://doi.org/10.5194/npg-2020-31, 2020
Publication in NPG not foreseen
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For more than a decade, the climate has attracted stochastic dynamists with its unpredictable and complex phenomena. Our attention was attracted by the results of studies on the possibility of oceanic thermohaline circulation failure. We set the task to analyze the stability of the circulation current on-state and to predetermine what extreme events can unbalance it leading to attenuation. We also suggested possible scenarios for the resuscitation of the circulation in the event of its fading.
Ankit Agarwal, Norbert Marwan, Rathinasamy Maheswaran, Ugur Ozturk, Jürgen Kurths, and Bruno Merz
Hydrol. Earth Syst. Sci., 24, 2235–2251, https://doi.org/10.5194/hess-24-2235-2020, https://doi.org/10.5194/hess-24-2235-2020, 2020
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In the climate/hydrology network, each node represents a geographical location of climatological data, and links between nodes are set up based on their interaction or similar variability. Here, using network theory, we first generate a node-ranking measure and then prioritize the rain gauges to identify influential and expandable stations across Germany. To show the applicability of the proposed approach, we also compared the results with existing traditional and contemporary network measures.
Leander Moesinger, Wouter Dorigo, Richard de Jeu, Robin van der Schalie, Tracy Scanlon, Irene Teubner, and Matthias Forkel
Earth Syst. Sci. Data, 12, 177–196, https://doi.org/10.5194/essd-12-177-2020, https://doi.org/10.5194/essd-12-177-2020, 2020
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Vegetation optical depth (VOD) is measured by satellites and is related to the density of vegetation and its water content. VOD has a wide range of uses, including drought, wildfire danger, biomass, and carbon stock monitoring. For the past 30 years there have been various VOD data sets derived from space-borne microwave sensors, but biases between them prohibit a combined use. We removed these biases and merged the data to create the global long-term VOD Climate Archive (VODCA).
Jürgen Kurths, Ankit Agarwal, Roopam Shukla, Norbert Marwan, Maheswaran Rathinasamy, Levke Caesar, Raghavan Krishnan, and Bruno Merz
Nonlin. Processes Geophys., 26, 251–266, https://doi.org/10.5194/npg-26-251-2019, https://doi.org/10.5194/npg-26-251-2019, 2019
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We examined the spatial diversity of Indian rainfall teleconnection at different timescales, first by identifying homogeneous communities and later by computing non-linear linkages between the identified communities (spatial regions) and dominant climatic patterns, represented by climatic indices such as El Nino–Southern Oscillation, Indian Ocean Dipole, North Atlantic Oscillation, Pacific Decadal Oscillation and Atlantic Multi-Decadal Oscillation.
Kirsten Thonicke, Fanny Langerwisch, Matthias Baumann, Pedro J. Leitão, Tomáš Václavík, Ane Alencar, Margareth Simões, Simon Scheiter, Liam Langan, Mercedes Bustamante, Ignacio Gasparri, Marina Hirota, Jan Börner, Raoni Rajao, Britaldo Soares-Filho, Alberto Yanosky, José-Manuel Ochoa-Quinteiro, Lucas Seghezzo, Georgina Conti, and Anne Cristina de la Vega-Leinert
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-221, https://doi.org/10.5194/bg-2019-221, 2019
Publication in BG not foreseen
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Tropical dry forests and savannas harbor unique biodiversity and provide critical ecosystem services (ES), yet they are under severe pressure globally. We need to improve our understanding of how and when this pressure provokes tipping points in biodiversity and the associated social-ecological systems. We propose an approach to investigate how drivers leading to natural vegetation decline trigger biodiversity tipping and illustrate it using the example of the Dry Diagonal in South America.
Femke Lutz, Tobias Herzfeld, Jens Heinke, Susanne Rolinski, Sibyll Schaphoff, Werner von Bloh, Jetse J. Stoorvogel, and Christoph Müller
Geosci. Model Dev., 12, 2419–2440, https://doi.org/10.5194/gmd-12-2419-2019, https://doi.org/10.5194/gmd-12-2419-2019, 2019
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Tillage practices are under-represented in global biogeochemical models so that assessments of agricultural greenhouse gas emissions and climate mitigation options are hampered. We describe the implementation of tillage modules into the model LPJmL5.0, including multiple feedbacks between soil water, nitrogen, and productivity. By comparing simulation results with observational data, we show that the model can reproduce reported tillage effects on carbon and water dynamics and crop yields.
Matthias Forkel, Niels Andela, Sandy P. Harrison, Gitta Lasslop, Margreet van Marle, Emilio Chuvieco, Wouter Dorigo, Matthew Forrest, Stijn Hantson, Angelika Heil, Fang Li, Joe Melton, Stephen Sitch, Chao Yue, and Almut Arneth
Biogeosciences, 16, 57–76, https://doi.org/10.5194/bg-16-57-2019, https://doi.org/10.5194/bg-16-57-2019, 2019
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Weather, humans, and vegetation control the occurrence of fires. In this study we find that global fire–vegetation models underestimate the strong increase of burned area with higher previous-season plant productivity in comparison to satellite-derived relationships.
Chantelle Burton, Richard Betts, Manoel Cardoso, Ted R. Feldpausch, Anna Harper, Chris D. Jones, Douglas I. Kelley, Eddy Robertson, and Andy Wiltshire
Geosci. Model Dev., 12, 179–193, https://doi.org/10.5194/gmd-12-179-2019, https://doi.org/10.5194/gmd-12-179-2019, 2019
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Fire and land-use change are important disturbances within the Earth system, and their inclusion in models is critical to enable the correct simulation of vegetation cover. Here we describe developments to the land surface model JULES to represent explicit land-use change and fire and to assess the effects of each process on present day vegetation compared to observations. Using historical land-use data and the fire model INFERNO, overall model results are improved by the developments.
Werner von Bloh, Sibyll Schaphoff, Christoph Müller, Susanne Rolinski, Katharina Waha, and Sönke Zaehle
Geosci. Model Dev., 11, 2789–2812, https://doi.org/10.5194/gmd-11-2789-2018, https://doi.org/10.5194/gmd-11-2789-2018, 2018
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The dynamics of the terrestrial carbon cycle are of central importance for Earth system science. Nutrient limitations, especially from nitrogen, are important constraints on vegetation growth and the terrestrial carbon cycle. We extended the well-established global vegetation, hydrology, and crop model LPJmL with a nitrogen cycle. We find significant improvement in global patterns of crop productivity. Regional differences in crop productivity can now be largely reproduced by the model.
Sibyll Schaphoff, Werner von Bloh, Anja Rammig, Kirsten Thonicke, Hester Biemans, Matthias Forkel, Dieter Gerten, Jens Heinke, Jonas Jägermeyr, Jürgen Knauer, Fanny Langerwisch, Wolfgang Lucht, Christoph Müller, Susanne Rolinski, and Katharina Waha
Geosci. Model Dev., 11, 1343–1375, https://doi.org/10.5194/gmd-11-1343-2018, https://doi.org/10.5194/gmd-11-1343-2018, 2018
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Here we provide a comprehensive model description of a global terrestrial biosphere model, named LPJmL4, incorporating the carbon and water cycle and the quantification of agricultural production. The model allows for the consistent and joint quantification of climate and land use change impacts on the biosphere. The model represents the key ecosystem functions, but also the influence of humans on the biosphere. It comes with an evaluation paper to demonstrate the credibility of LPJmL4.
Sibyll Schaphoff, Matthias Forkel, Christoph Müller, Jürgen Knauer, Werner von Bloh, Dieter Gerten, Jonas Jägermeyr, Wolfgang Lucht, Anja Rammig, Kirsten Thonicke, and Katharina Waha
Geosci. Model Dev., 11, 1377–1403, https://doi.org/10.5194/gmd-11-1377-2018, https://doi.org/10.5194/gmd-11-1377-2018, 2018
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Here we provide a comprehensive evaluation of the now launched version 4.0 of the LPJmL biosphere, water, and agricultural model. The article is the second part to a comprehensive description of the LPJmL4 model. We have evaluated the model against various datasets of satellite observations, agricultural statistics, and in situ measurements by applying a range of metrics. We are able to show that the LPJmL4 model simulates many parameters and relations reasonably.
Matthias Forkel, Wouter Dorigo, Gitta Lasslop, Irene Teubner, Emilio Chuvieco, and Kirsten Thonicke
Geosci. Model Dev., 10, 4443–4476, https://doi.org/10.5194/gmd-10-4443-2017, https://doi.org/10.5194/gmd-10-4443-2017, 2017
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Wildfires affect infrastructures, vegetation, and the atmosphere. However, it is unclear how fires should be accurately represented in global vegetation models. We introduce here a new flexible data-driven fire modelling approach that allows us to explore sensitivities of burned areas to satellite and climate datasets. Our results suggest combining observations with data-driven and process-oriented fire models to better understand the role of fires in the Earth system.
Tim Kittel, Catrin Ciemer, Nastaran Lotfi, Thomas Peron, Francisco Rodrigues, Jürgen Kurths, and Reik V. Donner
Nonlin. Processes Geophys. Discuss., https://doi.org/10.5194/npg-2017-69, https://doi.org/10.5194/npg-2017-69, 2017
Revised manuscript not accepted
Ankit Agarwal, Norbert Marwan, Maheswaran Rathinasamy, Bruno Merz, and Jürgen Kurths
Nonlin. Processes Geophys., 24, 599–611, https://doi.org/10.5194/npg-24-599-2017, https://doi.org/10.5194/npg-24-599-2017, 2017
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Extreme events such as floods and droughts result from synchronization of different natural processes working at multiple timescales. Investigation on an observation timescale will not reveal the inherent underlying dynamics triggering these events. This paper develops a new method based on wavelets and event synchronization to unravel the hidden dynamics responsible for such sudden events. This method is tested with synthetic and real-world cases and the results are promising.
Finn Müller-Hansen, Manoel F. Cardoso, Eloi L. Dalla-Nora, Jonathan F. Donges, Jobst Heitzig, Jürgen Kurths, and Kirsten Thonicke
Nonlin. Processes Geophys., 24, 113–123, https://doi.org/10.5194/npg-24-113-2017, https://doi.org/10.5194/npg-24-113-2017, 2017
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Deforestation and subsequent land uses in the Brazilian Amazon have huge impacts on greenhouse gas emissions, local climate and biodiversity. To better understand these land-cover changes, we apply complex systems methods uncovering spatial patterns in regional transition probabilities between land-cover types, which we estimate using maps derived from satellite imagery. The results show clusters of similar land-cover dynamics and thus complement studies at the local scale.
M. Fader, S. Shi, W. von Bloh, A. Bondeau, and W. Cramer
Hydrol. Earth Syst. Sci., 20, 953–973, https://doi.org/10.5194/hess-20-953-2016, https://doi.org/10.5194/hess-20-953-2016, 2016
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At present, the Mediterranean region could save 35 % of water by implementing more efficient irrigation and conveyance systems (EICS). By 2080–2090 the region may face an increase in gross irrigation requirements (IRs) of up to 74 % due to climate change and population growth. EICS may be able to compensate to some degree these increases. Most countries in the northern and eastern Mediterranean have a high risk of not being able to meet future IRs due to water scarcity.
S. Sippel, F. E. L. Otto, M. Forkel, M. R. Allen, B. P. Guillod, M. Heimann, M. Reichstein, S. I. Seneviratne, K. Thonicke, and M. D. Mahecha
Earth Syst. Dynam., 7, 71–88, https://doi.org/10.5194/esd-7-71-2016, https://doi.org/10.5194/esd-7-71-2016, 2016
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We introduce a novel technique to bias correct climate model output for impact simulations that preserves its physical consistency and multivariate structure. The methodology considerably improves the representation of extremes in climatic variables relative to conventional bias correction strategies. Illustrative simulations of biosphere–atmosphere carbon and water fluxes with a biosphere model (LPJmL) show that the novel technique can be usefully applied to drive climate impact models.
P. Smith, M. F. Cotrufo, C. Rumpel, K. Paustian, P. J. Kuikman, J. A. Elliott, R. McDowell, R. I. Griffiths, S. Asakawa, M. Bustamante, J. I. House, J. Sobocká, R. Harper, G. Pan, P. C. West, J. S. Gerber, J. M. Clark, T. Adhya, R. J. Scholes, and M. C. Scholes
SOIL, 1, 665–685, https://doi.org/10.5194/soil-1-665-2015, https://doi.org/10.5194/soil-1-665-2015, 2015
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Soils play a pivotal role in major global biogeochemical cycles (carbon, nutrient, and water), while hosting the largest diversity of organisms on land. Soils deliver fundamental ecosystem services, and management to change a soil process in support of one ecosystem service can affect other services. We provide a critical review of these aspects, and conclude that, although there are knowledge gaps, enough is known improve soils globally, and we suggest actions to start this process.
M. Fader, W. von Bloh, S. Shi, A. Bondeau, and W. Cramer
Geosci. Model Dev., 8, 3545–3561, https://doi.org/10.5194/gmd-8-3545-2015, https://doi.org/10.5194/gmd-8-3545-2015, 2015
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This study presents the inclusion of 10 Mediterranean agricultural plants in an agro-ecosystem model (LPJmL): nut trees, date palms, citrus trees, orchards, olive trees, grapes, cotton, potatoes, vegetables and fodder grasses.
The model was successfully tested in three model outputs: agricultural yields, irrigation requirements and soil carbon density. With this development presented, LPJmL is now able to simulate in good detail and mechanistically the functioning of Mediterranean agriculture.
J. F. Donges, R. V. Donner, N. Marwan, S. F. M. Breitenbach, K. Rehfeld, and J. Kurths
Clim. Past, 11, 709–741, https://doi.org/10.5194/cp-11-709-2015, https://doi.org/10.5194/cp-11-709-2015, 2015
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Paleoclimate records from cave deposits allow the reconstruction of Holocene dynamics of the Asian monsoon system, an important tipping element in Earth's climate. Employing recently developed techniques of nonlinear time series analysis reveals several robust and continental-scale regime shifts in the complexity of monsoonal variability. These regime shifts might have played an important role as drivers of migration, cultural change, and societal collapse during the past 10,000 years.
A. Rammig, M. Wiedermann, J. F. Donges, F. Babst, W. von Bloh, D. Frank, K. Thonicke, and M. D. Mahecha
Biogeosciences, 12, 373–385, https://doi.org/10.5194/bg-12-373-2015, https://doi.org/10.5194/bg-12-373-2015, 2015
M. Forkel, N. Carvalhais, S. Schaphoff, W. v. Bloh, M. Migliavacca, M. Thurner, and K. Thonicke
Biogeosciences, 11, 7025–7050, https://doi.org/10.5194/bg-11-7025-2014, https://doi.org/10.5194/bg-11-7025-2014, 2014
T. K. D. Peron, C. H. Comin, D. R. Amancio, L. da F. Costa, F. A. Rodrigues, and J. Kurths
Nonlin. Processes Geophys., 21, 1127–1132, https://doi.org/10.5194/npg-21-1127-2014, https://doi.org/10.5194/npg-21-1127-2014, 2014
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In the past few years, complex networks have been extensively applied to climate sciences, yielding
the new field of climate networks. Here, we generalize climate network analysis by investigating the influence of altitudes in network topology. More precisely, we verified that nodes group into different communities corresponding to geographical areas with similar relief properties. This new approach may contribute to obtaining more complete climate network models.
Y. Zou, R. V. Donner, N. Marwan, M. Small, and J. Kurths
Nonlin. Processes Geophys., 21, 1113–1126, https://doi.org/10.5194/npg-21-1113-2014, https://doi.org/10.5194/npg-21-1113-2014, 2014
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We use visibility graphs to characterize asymmetries in the dynamics of sunspot areas in both solar hemispheres. Our analysis provides deep insights into the potential and limitations of this method, revealing a complex interplay between effects due to statistical versus dynamical properties of the observed data. Temporal changes in the hemispheric predominance of the graph connectivity are found to lag those directly associated with the total hemispheric sunspot areas themselves.
D. Eroglu, N. Marwan, S. Prasad, and J. Kurths
Nonlin. Processes Geophys., 21, 1085–1092, https://doi.org/10.5194/npg-21-1085-2014, https://doi.org/10.5194/npg-21-1085-2014, 2014
B. Goswami, J. Heitzig, K. Rehfeld, N. Marwan, A. Anoop, S. Prasad, and J. Kurths
Nonlin. Processes Geophys., 21, 1093–1111, https://doi.org/10.5194/npg-21-1093-2014, https://doi.org/10.5194/npg-21-1093-2014, 2014
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We present a new approach to estimating sedimentary proxy records along with the proxy uncertainty. We provide analytical expressions for the proxy record, while transparently propagating uncertainties from the ages to the proxy record. We represent proxies on an error-free, precise timescale. Our approach provides insight into the interrelations between proxy variability and the various uncertainties. We demonstrate our method with synthetic examples and proxy data from the Lonar lake in India.
V. Stolbova, P. Martin, B. Bookhagen, N. Marwan, and J. Kurths
Nonlin. Processes Geophys., 21, 901–917, https://doi.org/10.5194/npg-21-901-2014, https://doi.org/10.5194/npg-21-901-2014, 2014
K. Rehfeld, N. Molkenthin, and J. Kurths
Nonlin. Processes Geophys., 21, 691–703, https://doi.org/10.5194/npg-21-691-2014, https://doi.org/10.5194/npg-21-691-2014, 2014
L. Tupikina, K. Rehfeld, N. Molkenthin, V. Stolbova, N. Marwan, and J. Kurths
Nonlin. Processes Geophys., 21, 705–711, https://doi.org/10.5194/npg-21-705-2014, https://doi.org/10.5194/npg-21-705-2014, 2014
N. Molkenthin, K. Rehfeld, V. Stolbova, L. Tupikina, and J. Kurths
Nonlin. Processes Geophys., 21, 651–657, https://doi.org/10.5194/npg-21-651-2014, https://doi.org/10.5194/npg-21-651-2014, 2014
J. Hlinka, D. Hartman, N. Jajcay, M. Vejmelka, R. Donner, N. Marwan, J. Kurths, and M. Paluš
Nonlin. Processes Geophys., 21, 451–462, https://doi.org/10.5194/npg-21-451-2014, https://doi.org/10.5194/npg-21-451-2014, 2014
K. Rehfeld and J. Kurths
Clim. Past, 10, 107–122, https://doi.org/10.5194/cp-10-107-2014, https://doi.org/10.5194/cp-10-107-2014, 2014
F. Joos, R. Roth, J. S. Fuglestvedt, G. P. Peters, I. G. Enting, W. von Bloh, V. Brovkin, E. J. Burke, M. Eby, N. R. Edwards, T. Friedrich, T. L. Frölicher, P. R. Halloran, P. B. Holden, C. Jones, T. Kleinen, F. T. Mackenzie, K. Matsumoto, M. Meinshausen, G.-K. Plattner, A. Reisinger, J. Segschneider, G. Shaffer, M. Steinacher, K. Strassmann, K. Tanaka, A. Timmermann, and A. J. Weaver
Atmos. Chem. Phys., 13, 2793–2825, https://doi.org/10.5194/acp-13-2793-2013, https://doi.org/10.5194/acp-13-2793-2013, 2013
Related subject area
Biogeosciences
H2MV (v1.0): global physically constrained deep learning water cycle model with vegetation
NN-TOC v1: global prediction of total organic carbon in marine sediments using deep neural networks
China Wildfire Emission Dataset (ChinaWED v1) for the period 2012–2022
Process-based modeling of solar-induced chlorophyll fluorescence with VISIT-SIF version 1.0
Including the phosphorus cycle into the LPJ-GUESS dynamic global vegetation model (v4.1, r10994) – global patterns and temporal trends of N and P primary production limitation
A comprehensive land-surface vegetation model for multi-stream data assimilation, D&B v1.0
Sources of uncertainty in the SPITFIRE global fire model: development of LPJmL-SPITFIRE1.9 and directions for future improvements
The unicellular NUM v.0.91: a trait-based plankton model evaluated in two contrasting biogeographic provinces
FESOM2.1-REcoM3-MEDUSA2: an ocean–sea ice–biogeochemistry model coupled to a sediment model
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
Emulating grid-based forest carbon dynamics using machine learning: an LPJ-GUESS v4.1.1 application
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
Soil nitrous oxide emissions from global land ecosystems and their drivers within the LPJ-GUESS model (v4.1)
Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
Development and assessment of the physical-biogeochemical ocean regional model in the Northwest Pacific: NPRT v1.0 (ROMS v3.9–TOPAZ v2.0)
TROLL 4.0: representing water and carbon fluxes, leaf phenology and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 1: Model description
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
Parameterisation toolbox for physical-biogeochemical model compatible with FABM. Case study: the coupled 1D GOTM-ECOSMO E2E for the Sylt-Romo Bight, North Sea
TROLL 4.0: representing water and carbon fluxes, leaf phenology, and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 2: Model evaluation for two Amazonian sites
Estimation of above- and below-ground ecosystem parameters for the DVM-DOS-TEM v0.7.0 model using MADS v1.7.3: a synthetic case study
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
ML4Fire-XGBv1.0: Improving North American wildfire prediction by integrating a machine-learning fire model in a land surface model
Alquimia v1.0: A generic interface to biogeochemical codes – A tool for interoperable development, prototyping and benchmarking for multiphysics simulators
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
Zavud Baghirov, Martin Jung, Markus Reichstein, Marco Körner, and Basil Kraft
Geosci. Model Dev., 18, 2921–2943, https://doi.org/10.5194/gmd-18-2921-2025, https://doi.org/10.5194/gmd-18-2921-2025, 2025
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We use an innovative approach to studying the Earth's water cycle by integrating advanced machine learning techniques with a traditional water cycle model. Our model is designed to learn from observational data, with a particular emphasis on understanding the influence of vegetation on water movement. By closely aligning with real-world observations, our model offers new possibilities for enhancing our understanding of the water cycle and its interactions with vegetation.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
Geosci. Model Dev., 18, 2521–2544, https://doi.org/10.5194/gmd-18-2521-2025, https://doi.org/10.5194/gmd-18-2521-2025, 2025
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Our research uses deep learning to predict organic carbon stocks in ocean sediments, which is crucial for understanding their role in the global carbon cycle. By analysing over 22 000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate that the top 10 cm of ocean sediments hold about 156 Pg of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev., 18, 2509–2520, https://doi.org/10.5194/gmd-18-2509-2025, https://doi.org/10.5194/gmd-18-2509-2025, 2025
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The China Wildfire Emission Dataset (ChinaWED v1) estimated wildfire emissions in China during 2012–2022 as 78.13 Tg CO2, 279.47 Gg CH4, and 6.26 Gg N2O annually. Agricultural fires dominated emissions, while forest and grassland emissions decreased. Seasonal peaks occurred in late spring, with hotspots in northeast, southwest, and east China. The model emphasizes the importance of using localized emission factors and high-resolution fire estimates for accurate assessments.
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
Geosci. Model Dev., 18, 2329–2347, https://doi.org/10.5194/gmd-18-2329-2025, https://doi.org/10.5194/gmd-18-2329-2025, 2025
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Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical model developed based on the Vegetation Integrative Simulator for Trace gases (VISIT) to represent satellite-observed SIF. Our simulations reproduced the global distribution and seasonal variations in observed SIF. VISIT-SIF helps to improve photosynthetic processes through a combination of biogeochemical modeling and observed SIF.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
Geosci. Model Dev., 18, 2249–2274, https://doi.org/10.5194/gmd-18-2249-2025, https://doi.org/10.5194/gmd-18-2249-2025, 2025
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Our study maps global nitrogen (N) and phosphorus (P) availability and how they changed from 1901 to 2018. We find that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation increased, especially in the tropics, while N limitation decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, T. Luke Smallman, Susan C. Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zaehle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek S. El-Madany, Mirco Migliavacca, Marika Honkanen, Yann H. Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaétan Pique, Amanda Ojasalo, Shaun Quegan, Peter J. Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
Geosci. Model Dev., 18, 2137–2159, https://doi.org/10.5194/gmd-18-2137-2025, https://doi.org/10.5194/gmd-18-2137-2025, 2025
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When it comes to climate change, the land surface is where the vast majority of impacts happen. The task of monitoring those impacts across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us capture the changes that happen on our lands.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
Geosci. Model Dev., 18, 2021–2050, https://doi.org/10.5194/gmd-18-2021-2025, https://doi.org/10.5194/gmd-18-2021-2025, 2025
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Under climate change, the conditions necessary for wildfires to form are occurring more frequently in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a basis for future improvements.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev., 18, 1895–1916, https://doi.org/10.5194/gmd-18-1895-2025, https://doi.org/10.5194/gmd-18-1895-2025, 2025
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We describe and test the size-based Nutrient-Unicellular-Multicellular model, which defines unicellular plankton using a single set of parameters, on a eutrophic and oligotrophic ecosystem. The results demonstrate that both sites can be modeled with similar parameters and robust performance over a wide range of parameters. The study shows that the model is useful for non-experts and applicable for modeling ecosystems with limited data. It holds promise for evolutionary and deep-time climate models.
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev., 18, 977–1000, https://doi.org/10.5194/gmd-18-977-2025, https://doi.org/10.5194/gmd-18-977-2025, 2025
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Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change, the carbon storage in sediments slows down carbon cycling and influences feedbacks in the atmosphere–ocean–sediment system. This paper describes the coupling of a sediment model to an ocean biogeochemistry model and presents results under the pre-industrial climate and under CO2 perturbation.
Juliette Bernard, Elodie Salmon, Marielle Saunois, Shushi Peng, Penélope Serrano-Ortiz, Antoine Berchet, Palingamoorthy Gnanamoorthy, Joachim Jansen, and Philippe Ciais
Geosci. Model Dev., 18, 863–883, https://doi.org/10.5194/gmd-18-863-2025, https://doi.org/10.5194/gmd-18-863-2025, 2025
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Despite their importance, uncertainties remain in the evaluation of the drivers of temporal variability of methane emissions from wetlands on a global scale. Here, a simplified global model is developed, taking advantage of advances in remote-sensing data and in situ observations. The model reproduces the large spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights into sensitivity analyses.
Carolina Natel, David Martin Belda, Peter Anthoni, Neele Haß, Sam Rabin, and Almut Arneth
EGUsphere, https://doi.org/10.5194/egusphere-2024-4064, https://doi.org/10.5194/egusphere-2024-4064, 2025
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Complex models predict forest carbon responses to future climate change but are slow and computationally intensive, limiting large-scale analyses. We used machine learning to accelerate predictions from the LPJ-GUESS vegetation model. Our emulators, based on random forests and neural networks, achieved 97 % faster simulations. This approach enables rapid exploration of climate mitigation strategies and supports informed policy decisions.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie A. Fisher, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 18, 287–317, https://doi.org/10.5194/gmd-18-287-2025, https://doi.org/10.5194/gmd-18-287-2025, 2025
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Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Jianyong Ma, Almut Arneth, Benjamin Smith, Peter Anthoni, Xu-Ri, Peter Eliasson, David Wårlind, Martin Wittenbrink, and Stefan Olin
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-223, https://doi.org/10.5194/gmd-2024-223, 2024
Revised manuscript accepted for GMD
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Nitrous oxide (N2O) is a powerful greenhouse gas mainly released from natural and agricultural soils. This study examines how global soil N2O emissions have changed from 1961 to 2020 and identifies key factors driving these changes using an ecological model. The findings highlight croplands as the largest source, with factors like fertilizer use and climate change enhancing emissions. Rising CO2 levels, however, can partially mitigate N2O emissions through increased plant nitrogen uptake.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
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The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
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In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
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The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Daehyuk Kim, Hyun-Chae Jung, Jae-Hong Moon, and Na-Hyeon Lee
EGUsphere, https://doi.org/10.5194/egusphere-2024-1509, https://doi.org/10.5194/egusphere-2024-1509, 2024
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Physical–biogeochemical ocean global models is difficult to analyze oceanic environmental systems. To accurately understand the physical–biogeochemical processes at the regional scale, physical and biogeochemical models were coupled at a high resolution. The results successfully simulated the seasonal variations of chlorophyll and nutrients, particularly in the marginal seas, which were not captured by global models. The model is an important tool for studying physical–biogeochemical processes.
Isabelle Maréchaux, Fabian Jörg Fischer, Sylvain Schmitt, and Jérôme Chave
EGUsphere, https://doi.org/10.5194/egusphere-2024-3104, https://doi.org/10.5194/egusphere-2024-3104, 2024
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We describe TROLL 4.0, a simulator of forest dynamics that represents trees in a virtual space at one-meter resolution. Tree birth, growth, death and the underlying physiological processes such as carbon assimilation, water transpiration and leaf phenology depend on plant traits that are measured in the field for many individuals and species. The model is thus capable of jointly simulating forest structure, diversity and ecosystem functioning, a major challenge in modelling vegetation dynamics.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Hoa T. T. Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
EGUsphere, https://doi.org/10.5194/egusphere-2024-2710, https://doi.org/10.5194/egusphere-2024-2710, 2024
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Parameterisation is key in modeling to reproduce observations well but is often done manually. This study presents a Particle Swarm Optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, thus providing different insights into ecosystem dynamics, (2) optimized model complexity.
Sylvain Schmitt, Fabian Fischer, James Ball, Nicolas Barbier, Marion Boisseaux, Damien Bonal, Benoit Burban, Xiuzhi Chen, Géraldine Derroire, Jeremy Lichstein, Daniela Nemetschek, Natalia Restrepo-Coupe, Scott Saleska, Giacomo Sellan, Philippe Verley, Grégoire Vincent, Camille Ziegler, Jérôme Chave, and Isabelle Maréchaux
EGUsphere, https://doi.org/10.5194/egusphere-2024-3106, https://doi.org/10.5194/egusphere-2024-3106, 2024
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We evaluate the capability of TROLL 4.0, a simulator of forest dynamics, to represent tropical forest structure, diversity and functioning in two Amazonian forests. Evaluation data include forest inventories, carbon and water fluxes between the forest and the atmosphere, and leaf area and canopy height from remote-sensing products. The model realistically predicts the structure and composition, and the seasonality of carbon and water fluxes at both sites.
Elchin E. Jafarov, Helene Genet, Velimir V. Vesselinov, Valeria Briones, Aiza Kabeer, Andrew L. Mullen, Benjamin Maglio, Tobey Carman, Ruth Rutter, Joy Clein, Chu-Chun Chang, Dogukan Teber, Trevor Smith, Joshua M. Rady, Christina Schädel, Jennifer D. Watts, Brendan M. Rogers, and Susan M. Natali
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-158, https://doi.org/10.5194/gmd-2024-158, 2024
Revised manuscript accepted for GMD
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Thawing permafrost could greatly impact global climate. Our study improves modeling of carbon cycling in Arctic ecosystems. We developed an automated method to fine-tune a model that simulates carbon and nitrogen flows, using computer-generated data. Using computer-generated data, we tested our method and found it enhances accuracy and reduces the time needed for calibration. This work helps make climate predictions more reliable in sensitive permafrost regions.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Ye Liu, Huilin Huang, Sing-Chun Wang, Tao Zhang, Donghui Xu, and Yang Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-151, https://doi.org/10.5194/gmd-2024-151, 2024
Revised manuscript accepted for GMD
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This study integrates machine learning with a land surface model to improve wildfire predictions in North America. Traditional models struggle with accurately simulating burned areas due to simplified processes. By combining the predictive power of machine learning with a land model, our hybrid framework better captures fire dynamics. This approach enhances our understanding of wildfire behavior and aids in developing more effective climate and fire management strategies.
Sergi Molins, Benjamin Andre, Jeffrey Johnson, Glenn Hammond, Benjamin Sulman, Konstantin Lipnikov, Marcus Day, James Beisman, Daniil Svyatsky, Hang Deng, Peter Lichtner, Carl Steefel, and David Moulton
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-108, https://doi.org/10.5194/gmd-2024-108, 2024
Revised manuscript accepted for GMD
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Developing scientific software and making sure it functions properly requires a significant effort. As we advance our understanding of natural systems, however, there is the need to develop yet more complex models and codes. In this work, we present a piece of software that facilitates this work, specifically with regard to reactive processes. Existing tried-and-true codes are made available via this new interface, freeing up resources to focus on the new aspects of the problems at hand.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
Short summary
Short summary
Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
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Short summary
This work shows the successful application of a systematic model–data integration setup, as well as the implementation of a new fire danger formulation, in order to optimize a process-based fire-enabled dynamic global vegetation model. We have demonstrated a major improvement in the fire representation within LPJmL4-SPITFIRE in terms of the spatial pattern and the interannual variability of burned area in South America as well as in the modelling of biomass and the distribution of plant types.
This work shows the successful application of a systematic model–data integration setup, as...
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