Articles | Volume 12, issue 9
https://doi.org/10.5194/gmd-12-4133-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-12-4133-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
| 
23 Sep 2019
Development and technical paper |
| 23 Sep 2019
| 23 Sep 2019
Identification of key parameters controlling demographically structured vegetation dynamics in a land surface model: CLM4.5(FATES)
Elias C. Massoud
Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
Department of Civil and Environmental Engineering, University of California Irvine, Irvine, CA, USA
Chonggang Xu
CORRESPONDING AUTHOR
Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, USA
Rosie A. Fisher
Centre Européen de Recherche et de Formation Avancée en Calcul Scientifique (CERFACS), Toulouse, France
Ryan G. Knox
Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
Anthony P. Walker
Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
Shawn P. Serbin
Environmental & Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, USA
Bradley O. Christoffersen
Department of Biology, University of Texas Rio Grande Valley, Edinburg, TX, USA
Jennifer A. Holm
Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
Lara M. Kueppers
Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
Daniel M. Ricciuto
Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
Liang Wei
Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, USA
Daniel J. Johnson
School of Forest Resources and Conservation, University of Florida, Gainesville, FL, USA
Jeffrey Q. Chambers
Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
Charlie D. Koven
Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
Nate G. McDowell
Earth Systems Analysis and Modeling Division, Pacific Northwest National Laboratory, Richland, WA, USA
Jasper A. Vrugt
Department of Civil and Environmental Engineering, University of California Irvine, Irvine, CA, USA
Department of Earth System Science, University of California Irvine, Irvine, CA, USA
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The water balance on river basin scales depends on a number of soil physical processes. Gaining information on these quantities using observations is a key step toward improving the skill of land surface hydrology models. In this study, we use data from the Gravity Recovery and Climate Experiment (NASA-GRACE) to inform and constrain these hydrologic processes. We show that our model is able to simulate the land hydrologic cycle for a watershed in the Amazon from January 2003 to December 2012.
Lina Teckentrup, Martin G. De Kauwe, Andrew J. Pitman, Daniel S. Goll, Vanessa Haverd, Atul K. Jain, Emilie Joetzjer, Etsushi Kato, Sebastian Lienert, Danica Lombardozzi, Patrick C. McGuire, Joe R. Melton, Julia E. M. S. Nabel, Julia Pongratz, Stephen Sitch, Anthony P. Walker, and Sönke Zaehle
Biogeosciences, 18, 5639–5668, https://doi.org/10.5194/bg-18-5639-2021, https://doi.org/10.5194/bg-18-5639-2021, 2021
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The Australian continent is included in global assessments of the carbon cycle such as the global carbon budget, yet the performance of dynamic global vegetation models (DGVMs) over Australia has rarely been evaluated. We assessed simulations by an ensemble of dynamic global vegetation models over Australia and highlighted a number of key areas that lead to model divergence on both short (inter-annual) and long (decadal) timescales.
Benjamin M. Sanderson, Angeline G. Pendergrass, Charles D. Koven, Florent Brient, Ben B. B. Booth, Rosie A. Fisher, and Reto Knutti
Earth Syst. Dynam., 12, 899–918, https://doi.org/10.5194/esd-12-899-2021, https://doi.org/10.5194/esd-12-899-2021, 2021
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Emergent constraints promise a pathway to the reduction in climate projection uncertainties by exploiting ensemble relationships between observable quantities and unknown climate response parameters. This study considers the robustness of these relationships in light of biases and common simplifications that may be present in the original ensemble of climate simulations. We propose a classification scheme for constraints and a number of practical case studies.
Xin Huang, Dan Lu, Daniel M. Ricciuto, Paul J. Hanson, Andrew D. Richardson, Xuehe Lu, Ensheng Weng, Sheng Nie, Lifen Jiang, Enqing Hou, Igor F. Steinmacher, and Yiqi Luo
Geosci. Model Dev., 14, 5217–5238, https://doi.org/10.5194/gmd-14-5217-2021, https://doi.org/10.5194/gmd-14-5217-2021, 2021
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In the data-rich era, data assimilation is widely used to integrate abundant observations into models to reduce uncertainty in ecological forecasting. However, applications of data assimilation are restricted by highly technical requirements. To alleviate this technical burden, we developed a model-independent data assimilation (MIDA) module which is friendly to ecologists with limited programming skills. MIDA also supports a flexible switch of different models or observations in DA analysis.
Polly C. Buotte, Charles D. Koven, Chonggang Xu, Jacquelyn K. Shuman, Michael L. Goulden, Samuel Levis, Jessica Katz, Junyan Ding, Wu Ma, Zachary Robbins, and Lara M. Kueppers
Biogeosciences, 18, 4473–4490, https://doi.org/10.5194/bg-18-4473-2021, https://doi.org/10.5194/bg-18-4473-2021, 2021
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We present an approach for ensuring the definitions of plant types in dynamic vegetation models are connected to the underlying ecological processes controlling community composition. Our approach can be applied regionally or globally. Robust resolution of community composition will allow us to use these models to address important questions related to future climate and management effects on plant community composition, structure, carbon storage, and feedbacks within the Earth system.
Eva Sinha, Kate Calvin, Ben Bond-Lamberty, Beth Drewniak, Dan Ricciuto, Khachik Sargsyan, Yanyan Cheng, Carl Bernacchi, and Caitlin Moore
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2021-244, https://doi.org/10.5194/gmd-2021-244, 2021
Preprint withdrawn
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Perennial bioenergy crops are not well represented in global land models, despite projected increase in their production. Our study expands Energy Exascale Earth System Model (E3SM) Land Model (ELM) to include perennial bioenergy crops and calibrates the model for miscanthus and switchgrass. The calibrated model captures the seasonality and magnitude of carbon and energy fluxes. This study provides the foundation for future research examining the impact of perennial bioenergy crop expansion.
Daniel M. Ricciuto, Xiaojuan Yang, Dali Wang, and Peter E. Thornton
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-163, https://doi.org/10.5194/bg-2021-163, 2021
Publication in BG not foreseen
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This paper uses a novel approach to quantify the impacts of the choice of decomposition model on carbon and nitrogen cycling. We compare the models to experimental data that examined litter decomposition over five different biomes. Despite widely differing assumptions, the models produce similar patterns of decomposition when nutrients are limiting. This differs from past analyses that did not consider the impacts of changing environmental conditions or nutrients.
Wu Ma, Lu Zhai, Alexandria Pivovaroff, Jacquelyn Shuman, Polly Buotte, Junyan Ding, Bradley Christoffersen, Ryan Knox, Max Moritz, Rosie A. Fisher, Charles D. Koven, Lara Kueppers, and Chonggang Xu
Biogeosciences, 18, 4005–4020, https://doi.org/10.5194/bg-18-4005-2021, https://doi.org/10.5194/bg-18-4005-2021, 2021
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We use a hydrodynamic demographic vegetation model to estimate live fuel moisture dynamics of chaparral shrubs, a dominant vegetation type in fire-prone southern California. Our results suggest that multivariate climate change could cause a significant net reduction in live fuel moisture and thus exacerbate future wildfire danger in chaparral shrub systems.
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos P. M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugénie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, André Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Hölttä, Friso Holwerda, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Anders Lindroth, Pilar Llorens, Álvaro López-Bernal, Michael M. Loranty, Dietmar Lüttschwager, Cate Macinnis-Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez-Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, and Jordi Martínez-Vilalta
Earth Syst. Sci. Data, 13, 2607–2649, https://doi.org/10.5194/essd-13-2607-2021, https://doi.org/10.5194/essd-13-2607-2021, 2021
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Transpiration is a key component of global water balance, but it is poorly constrained from available observations. We present SAPFLUXNET, the first global database of tree-level transpiration from sap flow measurements, containing 202 datasets and covering a wide range of ecological conditions. SAPFLUXNET and its accompanying R software package
sapfluxnetrwill facilitate new data syntheses on the ecological factors driving water use and drought responses of trees and forests.
Wolfgang A. Obermeier, Julia E. M. S. Nabel, Tammas Loughran, Kerstin Hartung, Ana Bastos, Felix Havermann, Peter Anthoni, Almut Arneth, Daniel S. Goll, Sebastian Lienert, Danica Lombardozzi, Sebastiaan Luyssaert, Patrick C. McGuire, Joe R. Melton, Benjamin Poulter, Stephen Sitch, Michael O. Sullivan, Hanqin Tian, Anthony P. Walker, Andrew J. Wiltshire, Soenke Zaehle, and Julia Pongratz
Earth Syst. Dynam., 12, 635–670, https://doi.org/10.5194/esd-12-635-2021, https://doi.org/10.5194/esd-12-635-2021, 2021
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We provide the first spatio-temporally explicit comparison of different model-derived fluxes from land use and land cover changes (fLULCCs) by using the TRENDY v8 dynamic global vegetation models used in the 2019 global carbon budget. We find huge regional fLULCC differences resulting from environmental assumptions, simulated periods, and the timing of land use and land cover changes, and we argue for a method consistent across time and space and for carefully choosing the accounting period.
Xiaoying Shi, Daniel M. Ricciuto, Peter E. Thornton, Xiaofeng Xu, Fengming Yuan, Richard J. Norby, Anthony P. Walker, Jeffrey M. Warren, Jiafu Mao, Paul J. Hanson, Lin Meng, David Weston, and Natalie A. Griffiths
Biogeosciences, 18, 467–486, https://doi.org/10.5194/bg-18-467-2021, https://doi.org/10.5194/bg-18-467-2021, 2021
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The Sphagnum mosses are the important species of a wetland ecosystem. To better represent the peatland ecosystem, we introduced the moss species to the land model component (ELM) of the Energy Exascale Earth System Model (E3SM) by developing water content dynamics and nonvascular photosynthetic processes for moss. We tested the model against field observations and used the model to make projections of the site's carbon cycle under warming and atmospheric CO2 concentration scenarios.
Katherine Dagon, Benjamin M. Sanderson, Rosie A. Fisher, and David M. Lawrence
Adv. Stat. Clim. Meteorol. Oceanogr., 6, 223–244, https://doi.org/10.5194/ascmo-6-223-2020, https://doi.org/10.5194/ascmo-6-223-2020, 2020
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Uncertainties in land model projections are important to understand in order to build confidence in Earth system modeling. In this paper, we introduce a framework for estimating uncertain land model parameters with machine learning. This method increases the computational efficiency of this process relative to traditional hand tuning approaches and provides objective methods to assess the results. We further identify key processes and parameters that are important for accurate land modeling.
Pierre Friedlingstein, Michael O'Sullivan, Matthew W. Jones, Robbie M. Andrew, Judith Hauck, Are Olsen, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Corinne Le Quéré, Josep G. Canadell, Philippe Ciais, Robert B. Jackson, Simone Alin, Luiz E. O. C. Aragão, Almut Arneth, Vivek Arora, Nicholas R. Bates, Meike Becker, Alice Benoit-Cattin, Henry C. Bittig, Laurent Bopp, Selma Bultan, Naveen Chandra, Frédéric Chevallier, Louise P. Chini, Wiley Evans, Liesbeth Florentie, Piers M. Forster, Thomas Gasser, Marion Gehlen, Dennis Gilfillan, Thanos Gkritzalis, Luke Gregor, Nicolas Gruber, Ian Harris, Kerstin Hartung, Vanessa Haverd, Richard A. Houghton, Tatiana Ilyina, Atul K. Jain, Emilie Joetzjer, Koji Kadono, Etsushi Kato, Vassilis Kitidis, Jan Ivar Korsbakken, Peter Landschützer, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Zhu Liu, Danica Lombardozzi, Gregg Marland, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Yosuke Niwa, Kevin O'Brien, Tsuneo Ono, Paul I. Palmer, Denis Pierrot, Benjamin Poulter, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Adam J. P. Smith, Adrienne J. Sutton, Toste Tanhua, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Guido van der Werf, Nicolas Vuichard, Anthony P. Walker, Rik Wanninkhof, Andrew J. Watson, David Willis, Andrew J. Wiltshire, Wenping Yuan, Xu Yue, and Sönke Zaehle
Earth Syst. Sci. Data, 12, 3269–3340, https://doi.org/10.5194/essd-12-3269-2020, https://doi.org/10.5194/essd-12-3269-2020, 2020
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The Global Carbon Budget 2020 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Robinson I. Negrón-Juárez, Jennifer A. Holm, Boris Faybishenko, Daniel Magnabosco-Marra, Rosie A. Fisher, Jacquelyn K. Shuman, Alessandro C. de Araujo, William J. Riley, and Jeffrey Q. Chambers
Biogeosciences, 17, 6185–6205, https://doi.org/10.5194/bg-17-6185-2020, https://doi.org/10.5194/bg-17-6185-2020, 2020
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The temporal variability in the Landsat satellite near-infrared (NIR) band captured the dynamics of forest regrowth after disturbances in Central Amazon. This variability was represented by the dynamics of forest regrowth after disturbances were properly represented by the ELM-FATES model (Functionally Assembled Terrestrial Ecosystem Simulator (FATES) in the Energy Exascale Earth System Model (E3SM) Land Model (ELM)).
Maoyi Huang, Yi Xu, Marcos Longo, Michael Keller, Ryan G. Knox, Charles D. Koven, and Rosie A. Fisher
Biogeosciences, 17, 4999–5023, https://doi.org/10.5194/bg-17-4999-2020, https://doi.org/10.5194/bg-17-4999-2020, 2020
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The Functionally Assembled Terrestrial Ecosystem Simulator (FATES) is enhanced to mimic the ecological, biophysical, and biogeochemical processes following a logging event. The model can specify the timing and aerial extent of logging events; determine the survivorship of cohorts in the disturbed forest; and modifying the biomass, coarse woody debris, and litter pools. This study lays the foundation to simulate land use change and forest degradation in FATES as part of an Earth system model.
Vivek K. Arora, Anna Katavouta, Richard G. Williams, Chris D. Jones, Victor Brovkin, Pierre Friedlingstein, Jörg Schwinger, Laurent Bopp, Olivier Boucher, Patricia Cadule, Matthew A. Chamberlain, James R. Christian, Christine Delire, Rosie A. Fisher, Tomohiro Hajima, Tatiana Ilyina, Emilie Joetzjer, Michio Kawamiya, Charles D. Koven, John P. Krasting, Rachel M. Law, David M. Lawrence, Andrew Lenton, Keith Lindsay, Julia Pongratz, Thomas Raddatz, Roland Séférian, Kaoru Tachiiri, Jerry F. Tjiputra, Andy Wiltshire, Tongwen Wu, and Tilo Ziehn
Biogeosciences, 17, 4173–4222, https://doi.org/10.5194/bg-17-4173-2020, https://doi.org/10.5194/bg-17-4173-2020, 2020
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Since the preindustrial period, land and ocean have taken up about half of the carbon emitted into the atmosphere by humans. Comparison of different earth system models with the carbon cycle allows us to assess how carbon uptake by land and ocean differs among models. This yields an estimate of uncertainty in our understanding of how land and ocean respond to increasing atmospheric CO2. This paper summarizes results from two such model intercomparison projects that use an idealized scenario.
Charles D. Koven, Ryan G. Knox, Rosie A. Fisher, Jeffrey Q. Chambers, Bradley O. Christoffersen, Stuart J. Davies, Matteo Detto, Michael C. Dietze, Boris Faybishenko, Jennifer Holm, Maoyi Huang, Marlies Kovenock, Lara M. Kueppers, Gregory Lemieux, Elias Massoud, Nathan G. McDowell, Helene C. Muller-Landau, Jessica F. Needham, Richard J. Norby, Thomas Powell, Alistair Rogers, Shawn P. Serbin, Jacquelyn K. Shuman, Abigail L. S. Swann, Charuleka Varadharajan, Anthony P. Walker, S. Joseph Wright, and Chonggang Xu
Biogeosciences, 17, 3017–3044, https://doi.org/10.5194/bg-17-3017-2020, https://doi.org/10.5194/bg-17-3017-2020, 2020
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Tropical forests play a crucial role in governing climate feedbacks, and are incredibly diverse ecosystems, yet most Earth system models do not take into account the diversity of plant traits in these forests and how this diversity may govern feedbacks. We present an approach to represent diverse competing plant types within Earth system models, test this approach at a tropical forest site, and explore how the representation of disturbance and competition governs traits of the forest community.
Andrew H. MacDougall, Thomas L. Frölicher, Chris D. Jones, Joeri Rogelj, H. Damon Matthews, Kirsten Zickfeld, Vivek K. Arora, Noah J. Barrett, Victor Brovkin, Friedrich A. Burger, Micheal Eby, Alexey V. Eliseev, Tomohiro Hajima, Philip B. Holden, Aurich Jeltsch-Thömmes, Charles Koven, Nadine Mengis, Laurie Menviel, Martine Michou, Igor I. Mokhov, Akira Oka, Jörg Schwinger, Roland Séférian, Gary Shaffer, Andrei Sokolov, Kaoru Tachiiri, Jerry Tjiputra, Andrew Wiltshire, and Tilo Ziehn
Biogeosciences, 17, 2987–3016, https://doi.org/10.5194/bg-17-2987-2020, https://doi.org/10.5194/bg-17-2987-2020, 2020
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The Zero Emissions Commitment (ZEC) is the change in global temperature expected to occur following the complete cessation of CO2 emissions. Here we use 18 climate models to assess the value of ZEC. For our experiment we find that ZEC 50 years after emissions cease is between −0.36 to +0.29 °C. The most likely value of ZEC is assessed to be close to zero. However, substantial continued warming for decades or centuries following cessation of CO2 emission cannot be ruled out.
Kurt C. Solander, Brent D. Newman, Alessandro Carioca de Araujo, Holly R. Barnard, Z. Carter Berry, Damien Bonal, Mario Bretfeld, Benoit Burban, Luiz Antonio Candido, Rolando Célleri, Jeffery Q. Chambers, Bradley O. Christoffersen, Matteo Detto, Wouter A. Dorigo, Brent E. Ewers, Savio José Filgueiras Ferreira, Alexander Knohl, L. Ruby Leung, Nate G. McDowell, Gretchen R. Miller, Maria Terezinha Ferreira Monteiro, Georgianne W. Moore, Robinson Negron-Juarez, Scott R. Saleska, Christian Stiegler, Javier Tomasella, and Chonggang Xu
Hydrol. Earth Syst. Sci., 24, 2303–2322, https://doi.org/10.5194/hess-24-2303-2020, https://doi.org/10.5194/hess-24-2303-2020, 2020
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We evaluate the soil moisture response in the humid tropics to El Niño during the three most recent super El Niño events. Our estimates are compared to in situ soil moisture estimates that span five continents. We find the strongest and most consistent soil moisture decreases in the Amazon and maritime southeastern Asia, while the most consistent increases occur over eastern Africa. Our results can be used to improve estimates of soil moisture in tropical ecohydrology models at multiple scales.
Martin Jung, Christopher Schwalm, Mirco Migliavacca, Sophia Walther, Gustau Camps-Valls, Sujan Koirala, Peter Anthoni, Simon Besnard, Paul Bodesheim, Nuno Carvalhais, Frédéric Chevallier, Fabian Gans, Daniel S. Goll, Vanessa Haverd, Philipp Köhler, Kazuhito Ichii, Atul K. Jain, Junzhi Liu, Danica Lombardozzi, Julia E. M. S. Nabel, Jacob A. Nelson, Michael O'Sullivan, Martijn Pallandt, Dario Papale, Wouter Peters, Julia Pongratz, Christian Rödenbeck, Stephen Sitch, Gianluca Tramontana, Anthony Walker, Ulrich Weber, and Markus Reichstein
Biogeosciences, 17, 1343–1365, https://doi.org/10.5194/bg-17-1343-2020, https://doi.org/10.5194/bg-17-1343-2020, 2020
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We test the approach of producing global gridded carbon fluxes based on combining machine learning with local measurements, remote sensing and climate data. We show that we can reproduce seasonal variations in carbon assimilated by plants via photosynthesis and in ecosystem net carbon balance. The ecosystem’s mean carbon balance and carbon flux trends require cautious interpretation. The analysis paves the way for future improvements of the data-driven assessment of carbon fluxes.
Stephanie C. Pennington, Nate G. McDowell, J. Patrick Megonigal, James C. Stegen, and Ben Bond-Lamberty
Biogeosciences, 17, 771–780, https://doi.org/10.5194/bg-17-771-2020, https://doi.org/10.5194/bg-17-771-2020, 2020
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Soil respiration (Rs) is the flow of CO2 from the soil surface to the atmosphere and is one of the largest carbon fluxes on land. This study examined the effect of local basal area (tree area) on Rs in a coastal forest in eastern Maryland, USA. Rs measurements were taken as well as distance from soil collar, diameter, and species of each tree within a 15 m radius. We found that trees within 5 m of our sampling points had a positive effect on how sensitive soil respiration was to temperature.
Christian G. Andresen, David M. Lawrence, Cathy J. Wilson, A. David McGuire, Charles Koven, Kevin Schaefer, Elchin Jafarov, Shushi Peng, Xiaodong Chen, Isabelle Gouttevin, Eleanor Burke, Sarah Chadburn, Duoying Ji, Guangsheng Chen, Daniel Hayes, and Wenxin Zhang
The Cryosphere, 14, 445–459, https://doi.org/10.5194/tc-14-445-2020, https://doi.org/10.5194/tc-14-445-2020, 2020
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Widely-used land models project near-surface drying of the terrestrial Arctic despite increases in the net water balance driven by climate change. Drying was generally associated with increases of active-layer depth and permafrost thaw in a warming climate. However, models lack important mechanisms such as thermokarst and soil subsidence that will change the hydrological regime and add to the large uncertainty in the future Arctic hydrological state and the associated permafrost carbon feedback.
Chris D. Jones, Thomas L. Frölicher, Charles Koven, Andrew H. MacDougall, H. Damon Matthews, Kirsten Zickfeld, Joeri Rogelj, Katarzyna B. Tokarska, Nathan P. Gillett, Tatiana Ilyina, Malte Meinshausen, Nadine Mengis, Roland Séférian, Michael Eby, and Friedrich A. Burger
Geosci. Model Dev., 12, 4375–4385, https://doi.org/10.5194/gmd-12-4375-2019, https://doi.org/10.5194/gmd-12-4375-2019, 2019
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Global warming is simply related to the total emission of CO2 allowing us to define a carbon budget. However, information on the Zero Emissions Commitment is a key missing link to assess remaining carbon budgets to achieve the climate targets of the Paris Agreement. It was therefore decided that a small targeted MIP activity to fill this knowledge gap would be extremely valuable. This article formalises the experimental design alongside the other CMIP6 documentation papers.
Marcos Longo, Ryan G. Knox, David M. Medvigy, Naomi M. Levine, Michael C. Dietze, Yeonjoo Kim, Abigail L. S. Swann, Ke Zhang, Christine R. Rollinson, Rafael L. Bras, Steven C. Wofsy, and Paul R. Moorcroft
Geosci. Model Dev., 12, 4309–4346, https://doi.org/10.5194/gmd-12-4309-2019, https://doi.org/10.5194/gmd-12-4309-2019, 2019
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Our paper describes the Ecosystem Demography model. This computer program calculates how plants and ground exchange heat, water, and carbon with the air, and how plants grow, reproduce and die in different climates. Most models simplify forests to an average big tree. We consider that tall, deep-rooted trees get more light and water than small plants, and that some plants can with shade and drought. This diversity helps us to better explain how plants live and interact with the atmosphere.
Marcos Longo, Ryan G. Knox, Naomi M. Levine, Abigail L. S. Swann, David M. Medvigy, Michael C. Dietze, Yeonjoo Kim, Ke Zhang, Damien Bonal, Benoit Burban, Plínio B. Camargo, Matthew N. Hayek, Scott R. Saleska, Rodrigo da Silva, Rafael L. Bras, Steven C. Wofsy, and Paul R. Moorcroft
Geosci. Model Dev., 12, 4347–4374, https://doi.org/10.5194/gmd-12-4347-2019, https://doi.org/10.5194/gmd-12-4347-2019, 2019
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The Ecosystem Demography model calculates the fluxes of heat, water, and carbon between plants and ground and the air, and the life cycle of plants in different climates. To test if our calculations were reasonable, we compared our results with field and satellite measurements. Our model predicts well the extent of the Amazon forest, how much light forests absorb, and how much water forests release to the air. However, it must improve the tree growth rates and how fast dead plants decompose.
Mingkai Jiang, Sönke Zaehle, Martin G. De Kauwe, Anthony P. Walker, Silvia Caldararu, David S. Ellsworth, and Belinda E. Medlyn
Geosci. Model Dev., 12, 2069–2089, https://doi.org/10.5194/gmd-12-2069-2019, https://doi.org/10.5194/gmd-12-2069-2019, 2019
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Here we used a simple analytical framework developed by Comins and McMurtrie (1993) to investigate how different model assumptions affected plant responses to elevated CO2. This framework is useful in revealing both the consequences and the mechanisms through which different assumptions affect predictions. We therefore recommend the use of this framework to analyze the likely outcomes of new assumptions before introducing them to complex model structures.
Dan Lu and Daniel Ricciuto
Geosci. Model Dev., 12, 1791–1807, https://doi.org/10.5194/gmd-12-1791-2019, https://doi.org/10.5194/gmd-12-1791-2019, 2019
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This work uses machine-learning techniques to advance the predictive understanding of large-scale Earth systems.
Junyi Liang, Gangsheng Wang, Daniel M. Ricciuto, Lianhong Gu, Paul J. Hanson, Jeffrey D. Wood, and Melanie A. Mayes
Geosci. Model Dev., 12, 1601–1612, https://doi.org/10.5194/gmd-12-1601-2019, https://doi.org/10.5194/gmd-12-1601-2019, 2019
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Soil respiration, the second largest carbon fluxes between the atmosphere and land, is not well represented in global land models. In this study, using long-term observations at a temperate forest, we identified a solution for using better soil water potential simulations to improve predictions of soil respiration in the E3SM land model. In addition, parameter calibration further improved model performance.
Yuanyuan Huang, Mark Stacy, Jiang Jiang, Nilutpal Sundi, Shuang Ma, Volodymyr Saruta, Chang Gyo Jung, Zheng Shi, Jianyang Xia, Paul J. Hanson, Daniel Ricciuto, and Yiqi Luo
Geosci. Model Dev., 12, 1119–1137, https://doi.org/10.5194/gmd-12-1119-2019, https://doi.org/10.5194/gmd-12-1119-2019, 2019
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Predicting future changes in ecosystem services is not only highly desirable but is also becoming feasible as several forces are converging to transform ecological research into quantitative forecasting. To realize ecological forecasting, we have developed an Ecological Platform for Assimilating Data (EcoPAD) into models. EcoPAD also has the potential to become an interactive tool for resource management, stimulate citizen science in ecology, and transform environmental education.
Jennifer W. Harden, Jonathan A. O'Donnell, Katherine A. Heckman, Benjamin N. Sulman, Charles D. Koven, Chien-Lu Ping, and Gary J. Michaelson
SOIL Discuss., https://doi.org/10.5194/soil-2018-41, https://doi.org/10.5194/soil-2018-41, 2019
Revised manuscript not accepted
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We examined changes in soil carbon (C) associated with permafrost thaw, warming, and ecosystem shifts using a space-for-time study. Soil C turnover was estimated for soil C fractions using soil C and radiocarbon data. Observations informed a simple model to track soil C change over time. Both losses and gains of soil C occur in the profile due to shifts in C among density-separated fractions. Thawing initially resulted in C gains to mineral soil and eventually C losses as warming persists.
Corinne Le Quéré, Robbie M. Andrew, Pierre Friedlingstein, Stephen Sitch, Judith Hauck, Julia Pongratz, Penelope A. Pickers, Jan Ivar Korsbakken, Glen P. Peters, Josep G. Canadell, Almut Arneth, Vivek K. Arora, Leticia Barbero, Ana Bastos, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Philippe Ciais, Scott C. Doney, Thanos Gkritzalis, Daniel S. Goll, Ian Harris, Vanessa Haverd, Forrest M. Hoffman, Mario Hoppema, Richard A. Houghton, George Hurtt, Tatiana Ilyina, Atul K. Jain, Truls Johannessen, Chris D. Jones, Etsushi Kato, Ralph F. Keeling, Kees Klein Goldewijk, Peter Landschützer, Nathalie Lefèvre, Sebastian Lienert, Zhu Liu, Danica Lombardozzi, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-ichiro Nakaoka, Craig Neill, Are Olsen, Tsueno Ono, Prabir Patra, Anna Peregon, Wouter Peters, Philippe Peylin, Benjamin Pfeil, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Matthias Rocher, Christian Rödenbeck, Ute Schuster, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Tobias Steinhoff, Adrienne Sutton, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Ingrid T. van der Laan-Luijkx, Guido R. van der Werf, Nicolas Viovy, Anthony P. Walker, Andrew J. Wiltshire, Rebecca Wright, Sönke Zaehle, and Bo Zheng
Earth Syst. Sci. Data, 10, 2141–2194, https://doi.org/10.5194/essd-10-2141-2018, https://doi.org/10.5194/essd-10-2141-2018, 2018
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The Global Carbon Budget 2018 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Huikyo Lee, Alexander Goodman, Lewis McGibbney, Duane E. Waliser, Jinwon Kim, Paul C. Loikith, Peter B. Gibson, and Elias C. Massoud
Geosci. Model Dev., 11, 4435–4449, https://doi.org/10.5194/gmd-11-4435-2018, https://doi.org/10.5194/gmd-11-4435-2018, 2018
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The Regional Climate Model Evaluation System (RCMES) is designed to facilitate access to observational data and systematic evaluations of regional climate model simulations participating in the Coordinated Regional Climate Downscaling Experiment (CORDEX). To ensure software sustainability, development of RCMES is an open, publicly accessible process enabled by leveraging the Apache Software Foundation's open-source library, Open Climate Workbench (OCW).
Ashehad A. Ali, Yuanchao Fan, Marife D. Corre, Martyna M. Kotowska, Evelyn Hassler, Fernando E. Moyano, Christian Stiegler, Alexander Röll, Ana Meijide, Andre Ringeler, Christoph Leuschner, Tania June, Suria Tarigan, Holger Kreft, Dirk Hölscher, Chonggang Xu, Charles D. Koven, Rosie Fisher, Edzo Veldkamp, and Alexander Knohl
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2018-236, https://doi.org/10.5194/gmd-2018-236, 2018
Revised manuscript not accepted
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We used carbon-use and water-use related datasets of small-holder rubber plantations from Jambi province, Indonesia to develop and calibrate a rubber plant functional type for the Community Land Model (CLM-rubber). Increased sensitivity of stomata to soil water stress and enhanced respiration costs enabled the model to capture the magnitude of transpiration and leaf area index. Including temporal variations in leaf life span enabled the model to better capture the seasonality of leaf litterfall.
Anthony P. Walker, Ming Ye, Dan Lu, Martin G. De Kauwe, Lianhong Gu, Belinda E. Medlyn, Alistair Rogers, and Shawn P. Serbin
Geosci. Model Dev., 11, 3159–3185, https://doi.org/10.5194/gmd-11-3159-2018, https://doi.org/10.5194/gmd-11-3159-2018, 2018
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Large uncertainty is inherent in model predictions due to imperfect knowledge of how to describe the processes that a model is intended to represent. Yet methods to quantify and evaluate this model hypothesis uncertainty are limited. To address this, the multi-assumption architecture and testbed (MAAT) automates the generation of all possible models by combining multiple representations of multiple processes. MAAT provides a formal framework for quantification of model hypothesis uncertainty.
Xiyan Xu, William J. Riley, Charles D. Koven, and Gensuo Jia
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-257, https://doi.org/10.5194/bg-2018-257, 2018
Preprint withdrawn
Donghai Wu, Philippe Ciais, Nicolas Viovy, Alan K. Knapp, Kevin Wilcox, Michael Bahn, Melinda D. Smith, Sara Vicca, Simone Fatichi, Jakob Zscheischler, Yue He, Xiangyi Li, Akihiko Ito, Almut Arneth, Anna Harper, Anna Ukkola, Athanasios Paschalis, Benjamin Poulter, Changhui Peng, Daniel Ricciuto, David Reinthaler, Guangsheng Chen, Hanqin Tian, Hélène Genet, Jiafu Mao, Johannes Ingrisch, Julia E. S. M. Nabel, Julia Pongratz, Lena R. Boysen, Markus Kautz, Michael Schmitt, Patrick Meir, Qiuan Zhu, Roland Hasibeder, Sebastian Sippel, Shree R. S. Dangal, Stephen Sitch, Xiaoying Shi, Yingping Wang, Yiqi Luo, Yongwen Liu, and Shilong Piao
Biogeosciences, 15, 3421–3437, https://doi.org/10.5194/bg-15-3421-2018, https://doi.org/10.5194/bg-15-3421-2018, 2018
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Our results indicate that most ecosystem models do not capture the observed asymmetric responses under normal precipitation conditions, suggesting an overestimate of the drought effects and/or underestimate of the watering impacts on primary productivity, which may be the result of inadequate representation of key eco-hydrological processes. Collaboration between modelers and site investigators needs to be strengthened to improve the specific processes in ecosystem models in following studies.
Corinne Le Quéré, Robbie M. Andrew, Pierre Friedlingstein, Stephen Sitch, Julia Pongratz, Andrew C. Manning, Jan Ivar Korsbakken, Glen P. Peters, Josep G. Canadell, Robert B. Jackson, Thomas A. Boden, Pieter P. Tans, Oliver D. Andrews, Vivek K. Arora, Dorothee C. E. Bakker, Leticia Barbero, Meike Becker, Richard A. Betts, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Philippe Ciais, Catherine E. Cosca, Jessica Cross, Kim Currie, Thomas Gasser, Ian Harris, Judith Hauck, Vanessa Haverd, Richard A. Houghton, Christopher W. Hunt, George Hurtt, Tatiana Ilyina, Atul K. Jain, Etsushi Kato, Markus Kautz, Ralph F. Keeling, Kees Klein Goldewijk, Arne Körtzinger, Peter Landschützer, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Ivan Lima, Danica Lombardozzi, Nicolas Metzl, Frank Millero, Pedro M. S. Monteiro, David R. Munro, Julia E. M. S. Nabel, Shin-ichiro Nakaoka, Yukihiro Nojiri, X. Antonio Padin, Anna Peregon, Benjamin Pfeil, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Janet Reimer, Christian Rödenbeck, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Benjamin D. Stocker, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Ingrid T. van der Laan-Luijkx, Guido R. van der Werf, Steven van Heuven, Nicolas Viovy, Nicolas Vuichard, Anthony P. Walker, Andrew J. Watson, Andrew J. Wiltshire, Sönke Zaehle, and Dan Zhu
Earth Syst. Sci. Data, 10, 405–448, https://doi.org/10.5194/essd-10-405-2018, https://doi.org/10.5194/essd-10-405-2018, 2018
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The Global Carbon Budget 2017 describes data sets and methodology to quantify the five major components of the global carbon budget and their uncertainties. It is the 12th annual update and the 6th published in this journal.
Katrina E. Bennett, Theodore J. Bohn, Kurt Solander, Nathan G. McDowell, Chonggang Xu, Enrique Vivoni, and Richard S. Middleton
Hydrol. Earth Syst. Sci., 22, 709–725, https://doi.org/10.5194/hess-22-709-2018, https://doi.org/10.5194/hess-22-709-2018, 2018
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We applied the Variable Infiltration Capacity hydrologic model to examine scenarios of change under climate and landscape disturbances in the San Juan River basin, a major sub-watershed of the Colorado River basin. Climate change coupled with landscape disturbance leads to reduced streamflow in the San Juan River basin. Disturbances are expected to be widespread in this region. Therefore, accounting for these changes within the context of climate change is imperative for water resource planning.
Nicholas C. Parazoo, Charles D. Koven, David M. Lawrence, Vladimir Romanovsky, and Charles E. Miller
The Cryosphere, 12, 123–144, https://doi.org/10.5194/tc-12-123-2018, https://doi.org/10.5194/tc-12-123-2018, 2018
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Carbon models suggest the permafrost carbon feedback (soil carbon emissions from permafrost thaw) acts as a slow, unobservable leak. We investigate if permafrost temperature provides an observable signal to detect feedbacks. We find a slow carbon feedback in warm sub-Arctic permafrost soils, but potentially rapid feedback in cold Arctic permafrost. This is surprising since the cold permafrost region is dominated by tundra and underlain by deep, cold permafrost thought impervious to such changes.
Wei Li, Philippe Ciais, Shushi Peng, Chao Yue, Yilong Wang, Martin Thurner, Sassan S. Saatchi, Almut Arneth, Valerio Avitabile, Nuno Carvalhais, Anna B. Harper, Etsushi Kato, Charles Koven, Yi Y. Liu, Julia E.M.S. Nabel, Yude Pan, Julia Pongratz, Benjamin Poulter, Thomas A. M. Pugh, Maurizio Santoro, Stephen Sitch, Benjamin D. Stocker, Nicolas Viovy, Andy Wiltshire, Rasoul Yousefpour, and Sönke Zaehle
Biogeosciences, 14, 5053–5067, https://doi.org/10.5194/bg-14-5053-2017, https://doi.org/10.5194/bg-14-5053-2017, 2017
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We used several observation-based biomass datasets to constrain the historical land-use change carbon emissions simulated by models. Compared to the range of the original modeled emissions (from 94 to 273 Pg C), the observationally constrained global cumulative emission estimate is 155 ± 50 Pg C (1σ Gaussian error) from 1901 to 2012. Our approach can also be applied to evaluate the LULCC impact of land-based climate mitigation policies.
Deborah A. Clark, Shinichi Asao, Rosie Fisher, Sasha Reed, Peter B. Reich, Michael G. Ryan, Tana E. Wood, and Xiaojuan Yang
Biogeosciences, 14, 4663–4690, https://doi.org/10.5194/bg-14-4663-2017, https://doi.org/10.5194/bg-14-4663-2017, 2017
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Improved modeling of tropical-forest carbon cycling is urgently needed to project future climate and to guide global policy for greenhouse gases. Tropical forests store and process immense amounts of carbon, and their carbon cycling may be responding to climate change. Our goal with this paper, a multidisciplinary collaboration between modelers and field ecologists, is to identify reference-level field data from tropical forests that can be used to guide the models for these key ecosystems.
Hongjuan Zhang, Harrie-Jan Hendricks Franssen, Xujun Han, Jasper A. Vrugt, and Harry Vereecken
Hydrol. Earth Syst. Sci., 21, 4927–4958, https://doi.org/10.5194/hess-21-4927-2017, https://doi.org/10.5194/hess-21-4927-2017, 2017
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Applications of data assimilation (DA) arise in many fields of geosciences, perhaps most importantly in weather forecasting and hydrology. We want to investigate the roles of data assimilation methods and land surface models (LSMs) in joint estimation of states and parameters in the assimilation experiments. We find that all DA methods can improve prediction of states, and that differences between DA methods were limited but that the differences between LSMs were much larger.
Henrique F. Duarte, Brett M. Raczka, Daniel M. Ricciuto, John C. Lin, Charles D. Koven, Peter E. Thornton, David R. Bowling, Chun-Ta Lai, Kenneth J. Bible, and James R. Ehleringer
Biogeosciences, 14, 4315–4340, https://doi.org/10.5194/bg-14-4315-2017, https://doi.org/10.5194/bg-14-4315-2017, 2017
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We evaluate the Community Land Model (CLM4.5) against observations at an old-growth coniferous forest site that is subjected to water stress each summer. We found that, after calibration, CLM was able to reasonably simulate the observed fluxes of energy and carbon, carbon stocks, carbon isotope ratios, and ecosystem response to water stress. This study demonstrates that carbon isotopes can expose structural weaknesses in CLM and provide a key constraint that may guide future model development.
Dan Lu, Daniel Ricciuto, Anthony Walker, Cosmin Safta, and William Munger
Biogeosciences, 14, 4295–4314, https://doi.org/10.5194/bg-14-4295-2017, https://doi.org/10.5194/bg-14-4295-2017, 2017
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Calibration of terrestrial ecosystem models (TEMs) is important but challenging. This study applies an advanced sampling technique for parameter estimation of a TEM. The results improve the model fit and predictive performance.
Sina Muster, Kurt Roth, Moritz Langer, Stephan Lange, Fabio Cresto Aleina, Annett Bartsch, Anne Morgenstern, Guido Grosse, Benjamin Jones, A. Britta K. Sannel, Ylva Sjöberg, Frank Günther, Christian Andresen, Alexandra Veremeeva, Prajna R. Lindgren, Frédéric Bouchard, Mark J. Lara, Daniel Fortier, Simon Charbonneau, Tarmo A. Virtanen, Gustaf Hugelius, Juri Palmtag, Matthias B. Siewert, William J. Riley, Charles D. Koven, and Julia Boike
Earth Syst. Sci. Data, 9, 317–348, https://doi.org/10.5194/essd-9-317-2017, https://doi.org/10.5194/essd-9-317-2017, 2017
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Waterbodies are abundant in Arctic permafrost lowlands. Most waterbodies are ponds with a surface area smaller than 100 x 100 m. The Permafrost Region Pond and Lake Database (PeRL) for the first time maps ponds as small as 10 x 10 m. PeRL maps can be used to document changes both by comparing them to historical and future imagery. The distribution of waterbodies in the Arctic is important to know in order to manage resources in the Arctic and to improve climate predictions in the Arctic.
Kathrin M. Keller, Sebastian Lienert, Anil Bozbiyik, Thomas F. Stocker, Olga V. Churakova (Sidorova), David C. Frank, Stefan Klesse, Charles D. Koven, Markus Leuenberger, William J. Riley, Matthias Saurer, Rolf Siegwolf, Rosemarie B. Weigt, and Fortunat Joos
Biogeosciences, 14, 2641–2673, https://doi.org/10.5194/bg-14-2641-2017, https://doi.org/10.5194/bg-14-2641-2017, 2017
Andrew G. Slater, David M. Lawrence, and Charles D. Koven
The Cryosphere, 11, 989–996, https://doi.org/10.5194/tc-11-989-2017, https://doi.org/10.5194/tc-11-989-2017, 2017
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This work defines a metric for evaluation of a specific model snow process, namely, heat transfer through snow into soil. Heat transfer through snow regulates the difference in air temperature versus soil temperature. Accurate representation of the snow heat transfer process is critically important for accurate representation of the current and future state of permafrost. Utilizing this metric, we can clearly identify models that can and cannot reasonably represent snow heat transfer.
Paul J. Hanson, Jeffery S. Riggs, W. Robert Nettles, Jana R. Phillips, Misha B. Krassovski, Leslie A. Hook, Lianhong Gu, Andrew D. Richardson, Donald M. Aubrecht, Daniel M. Ricciuto, Jeffrey M. Warren, and Charlotte Barbier
Biogeosciences, 14, 861–883, https://doi.org/10.5194/bg-14-861-2017, https://doi.org/10.5194/bg-14-861-2017, 2017
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This paper describes operational methods to achieve whole-ecosystem warming (WEW) for tall-stature, high-carbon, boreal forest peatlands. The methods enable scientists to study immediate and longer-term (1 decade) responses of organisms (microbes to trees) and ecosystem functions (carbon, water and nutrient cycles). The WEW technology allows researchers to have a plausible glimpse of future environmental conditions for study that are not available in the current observational record.
Bradley O. Christoffersen, Manuel Gloor, Sophie Fauset, Nikolaos M. Fyllas, David R. Galbraith, Timothy R. Baker, Bart Kruijt, Lucy Rowland, Rosie A. Fisher, Oliver J. Binks, Sanna Sevanto, Chonggang Xu, Steven Jansen, Brendan Choat, Maurizio Mencuccini, Nate G. McDowell, and Patrick Meir
Geosci. Model Dev., 9, 4227–4255, https://doi.org/10.5194/gmd-9-4227-2016, https://doi.org/10.5194/gmd-9-4227-2016, 2016
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We developed a plant hydraulics model for tropical forests based on established plant physiological theory, and parameterized it by conducting a pantropical hydraulic trait survey. We show that a substantial amount of trait diversity can be represented in the model by a reduced set of trait dimensions. The fully parameterized model is able capture tree-level variation in water status and improves simulations of total ecosystem transpiration, showing how to incorporate hydraulic traits in models.
Corinne Le Quéré, Robbie M. Andrew, Josep G. Canadell, Stephen Sitch, Jan Ivar Korsbakken, Glen P. Peters, Andrew C. Manning, Thomas A. Boden, Pieter P. Tans, Richard A. Houghton, Ralph F. Keeling, Simone Alin, Oliver D. Andrews, Peter Anthoni, Leticia Barbero, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Philippe Ciais, Kim Currie, Christine Delire, Scott C. Doney, Pierre Friedlingstein, Thanos Gkritzalis, Ian Harris, Judith Hauck, Vanessa Haverd, Mario Hoppema, Kees Klein Goldewijk, Atul K. Jain, Etsushi Kato, Arne Körtzinger, Peter Landschützer, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Danica Lombardozzi, Joe R. Melton, Nicolas Metzl, Frank Millero, Pedro M. S. Monteiro, David R. Munro, Julia E. M. S. Nabel, Shin-ichiro Nakaoka, Kevin O'Brien, Are Olsen, Abdirahman M. Omar, Tsuneo Ono, Denis Pierrot, Benjamin Poulter, Christian Rödenbeck, Joe Salisbury, Ute Schuster, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Benjamin D. Stocker, Adrienne J. Sutton, Taro Takahashi, Hanqin Tian, Bronte Tilbrook, Ingrid T. van der Laan-Luijkx, Guido R. van der Werf, Nicolas Viovy, Anthony P. Walker, Andrew J. Wiltshire, and Sönke Zaehle
Earth Syst. Sci. Data, 8, 605–649, https://doi.org/10.5194/essd-8-605-2016, https://doi.org/10.5194/essd-8-605-2016, 2016
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The Global Carbon Budget 2016 is the 11th annual update of emissions of carbon dioxide (CO2) and their partitioning among the atmosphere, land, and ocean. This data synthesis brings together measurements, statistical information, and analyses of model results in order to provide an assessment of the global carbon budget and their uncertainties for years 1959 to 2015, with a projection for year 2016.
Brett Raczka, Henrique F. Duarte, Charles D. Koven, Daniel Ricciuto, Peter E. Thornton, John C. Lin, and David R. Bowling
Biogeosciences, 13, 5183–5204, https://doi.org/10.5194/bg-13-5183-2016, https://doi.org/10.5194/bg-13-5183-2016, 2016
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We use carbon isotopes of CO2 to improve the performance of a land surface model, a component with earth system climate models. We found that isotope observations can provide important information related to the exchange of carbon and water from vegetation driven by environmental stress from low atmospheric moisture and nitrogen limitation. It follows that isotopes have a unique potential to improve model performance and provide insight into land surface model development.
Fang Zhao, Ning Zeng, Ghassem Asrar, Pierre Friedlingstein, Akihiko Ito, Atul Jain, Eugenia Kalnay, Etsushi Kato, Charles D. Koven, Ben Poulter, Rashid Rafique, Stephen Sitch, Shijie Shu, Beni Stocker, Nicolas Viovy, Andy Wiltshire, and Sonke Zaehle
Biogeosciences, 13, 5121–5137, https://doi.org/10.5194/bg-13-5121-2016, https://doi.org/10.5194/bg-13-5121-2016, 2016
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The increasing seasonality of atmospheric CO2 is strongly linked with enhanced land vegetation activities in the last 5 decades, for which the importance of increasing CO2, climate and land use/cover change was evaluated in single model studies (Zeng et al., 2014; Forkel et al., 2016). Here we examine the relative importance of these factors in multiple models. Our results highlight models can show similar results in some benchmarks with different underlying regional dynamics.
Xiyan Xu, William J. Riley, Charles D. Koven, Dave P. Billesbach, Rachel Y.-W. Chang, Róisín Commane, Eugénie S. Euskirchen, Sean Hartery, Yoshinobu Harazono, Hiroki Iwata, Kyle C. McDonald, Charles E. Miller, Walter C. Oechel, Benjamin Poulter, Naama Raz-Yaseef, Colm Sweeney, Margaret Torn, Steven C. Wofsy, Zhen Zhang, and Donatella Zona
Biogeosciences, 13, 5043–5056, https://doi.org/10.5194/bg-13-5043-2016, https://doi.org/10.5194/bg-13-5043-2016, 2016
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Wetlands are the largest global natural methane source. Peat-rich bogs and fens lying between 50°N and 70°N contribute 10–30% to this source. The predictive capability of the seasonal methane cycle can directly affect the estimation of global methane budget. We present multiscale methane seasonal emission by observations and modeling and find that the uncertainties in predicting the seasonal methane emissions are from the wetland extent, cold-season CH4 production and CH4 transport processes.
Chris D. Jones, Vivek Arora, Pierre Friedlingstein, Laurent Bopp, Victor Brovkin, John Dunne, Heather Graven, Forrest Hoffman, Tatiana Ilyina, Jasmin G. John, Martin Jung, Michio Kawamiya, Charlie Koven, Julia Pongratz, Thomas Raddatz, James T. Randerson, and Sönke Zaehle
Geosci. Model Dev., 9, 2853–2880, https://doi.org/10.5194/gmd-9-2853-2016, https://doi.org/10.5194/gmd-9-2853-2016, 2016
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How the carbon cycle interacts with climate will affect future climate change and how society plans emissions reductions to achieve climate targets. The Coupled Climate Carbon Cycle Model Intercomparison Project (C4MIP) is an endorsed activity of CMIP6 and aims to quantify these interactions and feedbacks in state-of-the-art climate models. This paper lays out the experimental protocol for modelling groups to follow to contribute to C4MIP. It is a contribution to the CMIP6 GMD Special Issue.
Wenli Wang, Annette Rinke, John C. Moore, Duoying Ji, Xuefeng Cui, Shushi Peng, David M. Lawrence, A. David McGuire, Eleanor J. Burke, Xiaodong Chen, Bertrand Decharme, Charles Koven, Andrew MacDougall, Kazuyuki Saito, Wenxin Zhang, Ramdane Alkama, Theodore J. Bohn, Philippe Ciais, Christine Delire, Isabelle Gouttevin, Tomohiro Hajima, Gerhard Krinner, Dennis P. Lettenmaier, Paul A. Miller, Benjamin Smith, Tetsuo Sueyoshi, and Artem B. Sherstiukov
The Cryosphere, 10, 1721–1737, https://doi.org/10.5194/tc-10-1721-2016, https://doi.org/10.5194/tc-10-1721-2016, 2016
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The winter snow insulation is a key process for air–soil temperature coupling and is relevant for permafrost simulations. Differences in simulated air–soil temperature relationships and their modulation by climate conditions are found to be related to the snow model physics. Generally, models with better performance apply multilayer snow schemes.
A. A. Ali, C. Xu, A. Rogers, R. A. Fisher, S. D. Wullschleger, E. C. Massoud, J. A. Vrugt, J. D. Muss, N. G. McDowell, J. B. Fisher, P. B. Reich, and C. J. Wilson
Geosci. Model Dev., 9, 587–606, https://doi.org/10.5194/gmd-9-587-2016, https://doi.org/10.5194/gmd-9-587-2016, 2016
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We have developed a mechanistic model of leaf utilization of nitrogen for assimilation (LUNA V1.0) to predict the photosynthetic capacities at the global scale based on the optimization of key leaf-level metabolic processes. LUNA model predicts that future climatic changes would mostly affect plant photosynthetic capabilities in high-latitude regions and that Earth system models using fixed photosynthetic capabilities are likely to substantially overestimate future global photosynthesis.
W. Wang, A. Rinke, J. C. Moore, X. Cui, D. Ji, Q. Li, N. Zhang, C. Wang, S. Zhang, D. M. Lawrence, A. D. McGuire, W. Zhang, C. Delire, C. Koven, K. Saito, A. MacDougall, E. Burke, and B. Decharme
The Cryosphere, 10, 287–306, https://doi.org/10.5194/tc-10-287-2016, https://doi.org/10.5194/tc-10-287-2016, 2016
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We use a model-ensemble approach for simulating permafrost on the Tibetan Plateau. We identify the uncertainties across models (state-of-the-art land surface models) and across methods (most commonly used methods to define permafrost).
We differentiate between uncertainties stemming from climatic driving data or from physical process parameterization, and show how these uncertainties vary seasonally and inter-annually, and how estimates are subject to the definition of permafrost used.
We differentiate between uncertainties stemming from climatic driving data or from physical process parameterization, and show how these uncertainties vary seasonally and inter-annually, and how estimates are subject to the definition of permafrost used.
J. Mao, D. M. Ricciuto, P. E. Thornton, J. M. Warren, A. W. King, X. Shi, C. M. Iversen, and R. J. Norby
Biogeosciences, 13, 641–657, https://doi.org/10.5194/bg-13-641-2016, https://doi.org/10.5194/bg-13-641-2016, 2016
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The aim of this study is to implement, calibrate and evaluate the CLM4 against carbon and hydrology observations from a shading and labeling experiment in a stand of young loblolly pines. We found a combination of parameters measured on-site and calibration targeting biomass, transpiration, and 13C discrimination gave good agreement with pretreatment measurements. We also used observations from the experiment to develop a conceptual model of short-term photosynthate storage and transport.
S. Peng, P. Ciais, G. Krinner, T. Wang, I. Gouttevin, A. D. McGuire, D. Lawrence, E. Burke, X. Chen, B. Decharme, C. Koven, A. MacDougall, A. Rinke, K. Saito, W. Zhang, R. Alkama, T. J. Bohn, C. Delire, T. Hajima, D. Ji, D. P. Lettenmaier, P. A. Miller, J. C. Moore, B. Smith, and T. Sueyoshi
The Cryosphere, 10, 179–192, https://doi.org/10.5194/tc-10-179-2016, https://doi.org/10.5194/tc-10-179-2016, 2016
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Soil temperature change is a key indicator of the dynamics of permafrost. Using nine process-based ecosystem models with permafrost processes, a large spread of soil temperature trends across the models. Air temperature and longwave downward radiation are the main drivers of soil temperature trends. Based on an emerging observation constraint method, the total boreal near-surface permafrost area decrease comprised between 39 ± 14 × 103 and 75 ± 14 × 103 km2 yr−1 from 1960 to 2000.
Q. Zhu, W. J. Riley, J. Tang, and C. D. Koven
Biogeosciences, 13, 341–363, https://doi.org/10.5194/bg-13-341-2016, https://doi.org/10.5194/bg-13-341-2016, 2016
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Here we develop, calibrate, and test a nutrient competition model that accounts for multiple soil nutrients interacting with multiple biotic and abiotic consumers based on enzyme kinetics theory. Our model provides an ecologically consistent representation of nutrient competition appropriate for land biogeochemical models integrated in Earth system models.
G. Murray-Tortarolo, P. Friedlingstein, S. Sitch, V. J. Jaramillo, F. Murguía-Flores, A. Anav, Y. Liu, A. Arneth, A. Arvanitis, A. Harper, A. Jain, E. Kato, C. Koven, B. Poulter, B. D. Stocker, A. Wiltshire, S. Zaehle, and N. Zeng
Biogeosciences, 13, 223–238, https://doi.org/10.5194/bg-13-223-2016, https://doi.org/10.5194/bg-13-223-2016, 2016
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We modelled the carbon (C) cycle in Mexico for three different time periods: past (20th century), present (2000-2005) and future (2006-2100). We used different available products to estimate C stocks and fluxes in the country. Contrary to other current estimates, our results showed that Mexico was a C sink and this is likely to continue in the next century (unless the most extreme climate-change scenarios are reached).
C. Le Quéré, R. Moriarty, R. M. Andrew, J. G. Canadell, S. Sitch, J. I. Korsbakken, P. Friedlingstein, G. P. Peters, R. J. Andres, T. A. Boden, R. A. Houghton, J. I. House, R. F. Keeling, P. Tans, A. Arneth, D. C. E. Bakker, L. Barbero, L. Bopp, J. Chang, F. Chevallier, L. P. Chini, P. Ciais, M. Fader, R. A. Feely, T. Gkritzalis, I. Harris, J. Hauck, T. Ilyina, A. K. Jain, E. Kato, V. Kitidis, K. Klein Goldewijk, C. Koven, P. Landschützer, S. K. Lauvset, N. Lefèvre, A. Lenton, I. D. Lima, N. Metzl, F. Millero, D. R. Munro, A. Murata, J. E. M. S. Nabel, S. Nakaoka, Y. Nojiri, K. O'Brien, A. Olsen, T. Ono, F. F. Pérez, B. Pfeil, D. Pierrot, B. Poulter, G. Rehder, C. Rödenbeck, S. Saito, U. Schuster, J. Schwinger, R. Séférian, T. Steinhoff, B. D. Stocker, A. J. Sutton, T. Takahashi, B. Tilbrook, I. T. van der Laan-Luijkx, G. R. van der Werf, S. van Heuven, D. Vandemark, N. Viovy, A. Wiltshire, S. Zaehle, and N. Zeng
Earth Syst. Sci. Data, 7, 349–396, https://doi.org/10.5194/essd-7-349-2015, https://doi.org/10.5194/essd-7-349-2015, 2015
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Accurate assessment of anthropogenic carbon dioxide emissions and their redistribution among the atmosphere, ocean, and terrestrial biosphere is important to understand the global carbon cycle, support the development of climate policies, and project future climate change. We describe data sets and a methodology to quantify all major components of the global carbon budget, including their uncertainties, based on a range of data and models and their interpretation by a broad scientific community.
X. Shi, P. E. Thornton, D. M. Ricciuto, P. J. Hanson, J. Mao, S. D. Sebestyen, N. A. Griffiths, and G. Bisht
Biogeosciences, 12, 6463–6477, https://doi.org/10.5194/bg-12-6463-2015, https://doi.org/10.5194/bg-12-6463-2015, 2015
R. A. Fisher, S. Muszala, M. Verteinstein, P. Lawrence, C. Xu, N. G. McDowell, R. G. Knox, C. Koven, J. Holm, B. M. Rogers, A. Spessa, D. Lawrence, and G. Bonan
Geosci. Model Dev., 8, 3593–3619, https://doi.org/10.5194/gmd-8-3593-2015, https://doi.org/10.5194/gmd-8-3593-2015, 2015
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Predicting the distribution of vegetation under novel climates is important, both to understand how climate change will impact ecosystem services, but also to understand how vegetation changes might affect the carbon, energy and water cycles. Historically, predictions have been heavily dependent upon observations of existing vegetation boundaries. In this paper, we attempt to predict ecosystem boundaries from the ``bottom up'', and illustrate the complexities and promise of this approach.
C. D. Koven, J. Q. Chambers, K. Georgiou, R. Knox, R. Negron-Juarez, W. J. Riley, V. K. Arora, V. Brovkin, P. Friedlingstein, and C. D. Jones
Biogeosciences, 12, 5211–5228, https://doi.org/10.5194/bg-12-5211-2015, https://doi.org/10.5194/bg-12-5211-2015, 2015
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Terrestrial carbon feedbacks are a large uncertainty in climate change. We separate modeled feedback responses into those governed by changed carbon inputs (productivity) and changed outputs (turnover). The disaggregated responses show that both are important in controlling inter-model uncertainty. Interactions between productivity and turnover are also important, and research must focus on these interactions for more accurate projections of carbon cycle feedbacks.
M. A. Rawlins, A. D. McGuire, J. S. Kimball, P. Dass, D. Lawrence, E. Burke, X. Chen, C. Delire, C. Koven, A. MacDougall, S. Peng, A. Rinke, K. Saito, W. Zhang, R. Alkama, T. J. Bohn, P. Ciais, B. Decharme, I. Gouttevin, T. Hajima, D. Ji, G. Krinner, D. P. Lettenmaier, P. Miller, J. C. Moore, B. Smith, and T. Sueyoshi
Biogeosciences, 12, 4385–4405, https://doi.org/10.5194/bg-12-4385-2015, https://doi.org/10.5194/bg-12-4385-2015, 2015
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We used outputs from nine models to better understand land-atmosphere CO2 exchanges across Northern Eurasia over the period 1960-1990. Model estimates were assessed against independent ground and satellite measurements. We find that the models show a weakening of the CO2 sink over time; the models tend to overestimate respiration, causing an underestimate in NEP; the model range in regional NEP is twice the multimodel mean. Residence time for soil carbon decreased, amid a gain in carbon storage.
C. Safta, D. M. Ricciuto, K. Sargsyan, B. Debusschere, H. N. Najm, M. Williams, and P. E. Thornton
Geosci. Model Dev., 8, 1899–1918, https://doi.org/10.5194/gmd-8-1899-2015, https://doi.org/10.5194/gmd-8-1899-2015, 2015
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In this paper we propose a probabilistic framework for an uncertainty quantification study of a carbon cycle model and focus on the comparison between steady-state and transient
simulation setups. We study model parameters via global sensitivity analysis and employ a Bayesian approach to calibrate these parameters using NEE observations at the Harvard Forest site. The calibration results are then used to assess the predictive skill of the model via posterior predictive checks.
C. Le Quéré, R. Moriarty, R. M. Andrew, G. P. Peters, P. Ciais, P. Friedlingstein, S. D. Jones, S. Sitch, P. Tans, A. Arneth, T. A. Boden, L. Bopp, Y. Bozec, J. G. Canadell, L. P. Chini, F. Chevallier, C. E. Cosca, I. Harris, M. Hoppema, R. A. Houghton, J. I. House, A. K. Jain, T. Johannessen, E. Kato, R. F. Keeling, V. Kitidis, K. Klein Goldewijk, C. Koven, C. S. Landa, P. Landschützer, A. Lenton, I. D. Lima, G. Marland, J. T. Mathis, N. Metzl, Y. Nojiri, A. Olsen, T. Ono, S. Peng, W. Peters, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. E. Salisbury, U. Schuster, J. Schwinger, R. Séférian, J. Segschneider, T. Steinhoff, B. D. Stocker, A. J. Sutton, T. Takahashi, B. Tilbrook, G. R. van der Werf, N. Viovy, Y.-P. Wang, R. Wanninkhof, A. Wiltshire, and N. Zeng
Earth Syst. Sci. Data, 7, 47–85, https://doi.org/10.5194/essd-7-47-2015, https://doi.org/10.5194/essd-7-47-2015, 2015
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Carbon dioxide (CO2) emissions from human activities (burning fossil fuels and cement production, deforestation and other land-use change) are set to rise again in 2014.
This study (updated yearly) makes an accurate assessment of anthropogenic CO2 emissions and their redistribution between the atmosphere, ocean, and terrestrial biosphere in order to better understand the global carbon cycle, support the development of climate policies, and project future climate change.
B. Bond-Lamberty, J. P. Fisk, J. A. Holm, V. Bailey, G. Bohrer, and C. M. Gough
Biogeosciences, 12, 513–526, https://doi.org/10.5194/bg-12-513-2015, https://doi.org/10.5194/bg-12-513-2015, 2015
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How will aging forests behave as they undergo ecological transitions? Can our models, which support scientific, policy, and management analyses, accurately simulate these transitions? We tested whether three forest ecosystem models could reproduce dynamics observed in an experimentally manipulated forest in northern Michigan, USA. None of the models fully captured the post-disturbance C fluxes observed, raising doubts about their ability to simulate tree death after moderate disturbances.
R. G. Knox, M. Longo, A. L. S. Swann, K. Zhang, N. M. Levine, P. R. Moorcroft, and R. L. Bras
Hydrol. Earth Syst. Sci., 19, 241–273, https://doi.org/10.5194/hess-19-241-2015, https://doi.org/10.5194/hess-19-241-2015, 2015
Y. Wei, S. Liu, D. N. Huntzinger, A. M. Michalak, N. Viovy, W. M. Post, C. R. Schwalm, K. Schaefer, A. R. Jacobson, C. Lu, H. Tian, D. M. Ricciuto, R. B. Cook, J. Mao, and X. Shi
Geosci. Model Dev., 7, 2875–2893, https://doi.org/10.5194/gmd-7-2875-2014, https://doi.org/10.5194/gmd-7-2875-2014, 2014
G. Hugelius, J. Strauss, S. Zubrzycki, J. W. Harden, E. A. G. Schuur, C.-L. Ping, L. Schirrmeister, G. Grosse, G. J. Michaelson, C. D. Koven, J. A. O'Donnell, B. Elberling, U. Mishra, P. Camill, Z. Yu, J. Palmtag, and P. Kuhry
Biogeosciences, 11, 6573–6593, https://doi.org/10.5194/bg-11-6573-2014, https://doi.org/10.5194/bg-11-6573-2014, 2014
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This study provides an updated estimate of organic carbon stored in the northern permafrost region. The study includes estimates for carbon in soils (0 to 3 m depth) and deeper sediments in river deltas and the Yedoma region. We find that field data is still scarce from many regions. Total estimated carbon storage is ~1300 Pg with an uncertainty range of between 1100 and 1500 Pg. Around 800 Pg carbon is perennially frozen, equivalent to all carbon dioxide currently in the Earth's atmosphere.
J. A. Holm, J. Q. Chambers, W. D. Collins, and N. Higuchi
Biogeosciences, 11, 5773–5794, https://doi.org/10.5194/bg-11-5773-2014, https://doi.org/10.5194/bg-11-5773-2014, 2014
J. A. Holm, K. Jardine, A. B. Guenther, J. Q. Chambers, and E. Tribuzy
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acpd-14-23995-2014, https://doi.org/10.5194/acpd-14-23995-2014, 2014
Revised manuscript not accepted
C. Le Quéré, G. P. Peters, R. J. Andres, R. M. Andrew, T. A. Boden, P. Ciais, P. Friedlingstein, R. A. Houghton, G. Marland, R. Moriarty, S. Sitch, P. Tans, A. Arneth, A. Arvanitis, D. C. E. Bakker, L. Bopp, J. G. Canadell, L. P. Chini, S. C. Doney, A. Harper, I. Harris, J. I. House, A. K. Jain, S. D. Jones, E. Kato, R. F. Keeling, K. Klein Goldewijk, A. Körtzinger, C. Koven, N. Lefèvre, F. Maignan, A. Omar, T. Ono, G.-H. Park, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. Schwinger, J. Segschneider, B. D. Stocker, T. Takahashi, B. Tilbrook, S. van Heuven, N. Viovy, R. Wanninkhof, A. Wiltshire, and S. Zaehle
Earth Syst. Sci. Data, 6, 235–263, https://doi.org/10.5194/essd-6-235-2014, https://doi.org/10.5194/essd-6-235-2014, 2014
X. Yang, P. E. Thornton, D. M. Ricciuto, and W. M. Post
Biogeosciences, 11, 1667–1681, https://doi.org/10.5194/bg-11-1667-2014, https://doi.org/10.5194/bg-11-1667-2014, 2014
G. Hugelius, J. G. Bockheim, P. Camill, B. Elberling, G. Grosse, J. W. Harden, K. Johnson, T. Jorgenson, C. D. Koven, P. Kuhry, G. Michaelson, U. Mishra, J. Palmtag, C.-L. Ping, J. O'Donnell, L. Schirrmeister, E. A. G. Schuur, Y. Sheng, L. C. Smith, J. Strauss, and Z. Yu
Earth Syst. Sci. Data, 5, 393–402, https://doi.org/10.5194/essd-5-393-2013, https://doi.org/10.5194/essd-5-393-2013, 2013
D. N. Huntzinger, C. Schwalm, A. M. Michalak, K. Schaefer, A. W. King, Y. Wei, A. Jacobson, S. Liu, R. B. Cook, W. M. Post, G. Berthier, D. Hayes, M. Huang, A. Ito, H. Lei, C. Lu, J. Mao, C. H. Peng, S. Peng, B. Poulter, D. Riccuito, X. Shi, H. Tian, W. Wang, N. Zeng, F. Zhao, and Q. Zhu
Geosci. Model Dev., 6, 2121–2133, https://doi.org/10.5194/gmd-6-2121-2013, https://doi.org/10.5194/gmd-6-2121-2013, 2013
R. G. Knox, M. Longo, A. L. S. Swann, K. Zhang, N. M. Levine, P. R. Moorcroft, and R. L. Bras
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-10-15295-2013, https://doi.org/10.5194/hessd-10-15295-2013, 2013
Preprint withdrawn
M. Sadegh and J. A. Vrugt
Hydrol. Earth Syst. Sci., 17, 4831–4850, https://doi.org/10.5194/hess-17-4831-2013, https://doi.org/10.5194/hess-17-4831-2013, 2013
C. D. Koven, W. J. Riley, Z. M. Subin, J. Y. Tang, M. S. Torn, W. D. Collins, G. B. Bonan, D. M. Lawrence, and S. C. Swenson
Biogeosciences, 10, 7109–7131, https://doi.org/10.5194/bg-10-7109-2013, https://doi.org/10.5194/bg-10-7109-2013, 2013
P. C. Stoy, M. C. Dietze, A. D. Richardson, R. Vargas, A. G. Barr, R. S. Anderson, M. A. Arain, I. T. Baker, T. A. Black, J. M. Chen, R. B. Cook, C. M. Gough, R. F. Grant, D. Y. Hollinger, R. C. Izaurralde, C. J. Kucharik, P. Lafleur, B. E. Law, S. Liu, E. Lokupitiya, Y. Luo, J. W. Munger, C. Peng, B. Poulter, D. T. Price, D. M. Ricciuto, W. J. Riley, A. K. Sahoo, K. Schaefer, C. R. Schwalm, H. Tian, H. Verbeeck, and E. Weng
Biogeosciences, 10, 6893–6909, https://doi.org/10.5194/bg-10-6893-2013, https://doi.org/10.5194/bg-10-6893-2013, 2013
J. Y. Tang, W. J. Riley, C. D. Koven, and Z. M. Subin
Geosci. Model Dev., 6, 127–140, https://doi.org/10.5194/gmd-6-127-2013, https://doi.org/10.5194/gmd-6-127-2013, 2013
Related subject area
Biogeosciences
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCO v4-Hg: the role of surfactants and waves
BOATSv2: New ecological and economic features improve simulations of High Seas catch and effort
Lambda-PFLOTRAN 1.0: Workflow for Incorporating Organic Matter Chemistry Informed by Ultra High Resolution Mass Spectrometry into Biogeochemical Modeling
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water, and nitrogen perturbations
A novel Eulerian model based on central moments to simulate age and reactivity continua interacting with mixing processes
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO, and NH3 emissions from enhanced rock weathering with croplands
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
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MEDFATE 2.9.3: a trait-enabled model to simulate Mediterranean forest function and dynamics at regional scales
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie Fisher, and Harrie-Jan Hendricks Franssen
EGUsphere, https://doi.org/10.5194/egusphere-2024-978, https://doi.org/10.5194/egusphere-2024-978, 2024
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Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land Surface Models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes and variability of carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research on these processes.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-81, https://doi.org/10.5194/gmd-2024-81, 2024
Revised manuscript accepted for GMD
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The estimation of Hg0 fluxes is of great uncertainty due to neglecting wave breaking and sea surfactant. Integrating these factors into MITgcm significantly rise Hg0 transfer velocity. The updated model shows increased fluxes in high wind and wave regions and vice versa, enhancing the spatial heterogeneity. It shows a stronger correlation between Hg0 transfer velocity and wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-26, https://doi.org/10.5194/gmd-2024-26, 2024
Revised manuscript accepted for GMD
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Numerical models that capture key features of the global dynamics of fish communities play a crucial role in addressing the impacts of climate change and industrial fishing on ecosystems and societies. Here, we detail an update of the BiOeconomic marine Trophic Size-spectrum model that corrects the model representation of the dynamic of fisheries in the High Seas. This update also allows a better representation of biodiversity to improve future global and regional fisheries studies.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-34, https://doi.org/10.5194/gmd-2024-34, 2024
Revised manuscript accepted for GMD
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The newly developed Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate respiration and the resulting biogeochemistry. Lambda-PFLOTRAN is a python-based workflow via a Jupyter Notebook interface, that digests raw organic matter chemistry data via FTICR-MS, develops the representative reaction network, and completes a biogeochemical simulation with the open source, parallel reactive flow and transport code PFLOTRAN.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
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This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
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We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
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Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
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The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
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We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
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Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
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We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
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Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
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In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
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Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
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This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
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Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
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Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
Short summary
Short summary
Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
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Short summary
We conducted a comprehensive sensitivity analysis to understand behaviors of a demographic vegetation model within a land surface model. By running the model 5000 times with changing input parameter values, we found that (1) the photosynthetic capacity controls carbon fluxes, (2) the allometry is important for tree growth, and (3) the targeted carbon storage is important for tree survival. These results can provide guidance on improved model parameterization for a better fit to observations.
We conducted a comprehensive sensitivity analysis to understand behaviors of a demographic...
