Articles | Volume 12, issue 6
https://doi.org/10.5194/gmd-12-2227-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-12-2227-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
07 Jun 2019
Model description paper |
| 07 Jun 2019
| 07 Jun 2019
Description and validation of an intermediate complexity model for ecosystem photosynthesis and evapotranspiration: ACM-GPP-ETv1
Thomas Luke Smallman
CORRESPONDING AUTHOR
School of GeoSciences, University of Edinburgh, Edinburgh, UK
National Centre for Earth Observations, University of Edinburgh, Edinburgh, UK
Mathew Williams
School of GeoSciences, University of Edinburgh, Edinburgh, UK
National Centre for Earth Observations, University of Edinburgh, Edinburgh, UK
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T. L. Smallman, M. Williams, and J. B. Moncrieff
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Earth Syst. Sci. Data, 15, 5301–5369, https://doi.org/10.5194/essd-15-5301-2023, https://doi.org/10.5194/essd-15-5301-2023, 2023
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Xiaoran Zhu, Dong Chen, Maruko Kogure, Elizabeth Hoy, Logan Berner, Amy Breen, Abhishek Chatterjee, Scott Davidson, Gerald Frost, Teresa Hollingsworth, Go Iwahana, Randi Jandt, Anja Kade, Tatiana Loboda, Matt Macander, Michelle Mack, Charles Miller, Eric Miller, Susan Natali, Martha Raynolds, Adrian Rocha, Shiro Tsuyuzaki, Craig Tweedie, Donald Walker, Mathew Williams, Xin Xu, Yingtong Zhang, Nancy French, and Scott Goetz
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2023-222, https://doi.org/10.5194/essd-2023-222, 2023
Revised manuscript accepted for ESSD
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The Arctic tundra is experiencing widespread physical and biological changes largely in response to warming. Yet scientific understanding of tundra ecology and change remains limited due to relatively limited accessibility and study compared to other terrestrial biomes. To support synthesis research and inform future studies, we created the Synthesized Alaskan Tundra Field Dataset (SATFiD), which pulls together field datasets and includes vegetation, active layer, and fire-related properties.
Luana S. Basso, Chris Wilson, Martyn P. Chipperfield, Graciela Tejada, Henrique L. G. Cassol, Egídio Arai, Mathew Williams, T. Luke Smallman, Wouter Peters, Stijn Naus, John B. Miller, and Manuel Gloor
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The Amazon’s carbon balance may have changed due to forest degradation, deforestation and warmer climate. We used an atmospheric model and atmospheric CO2 observations to quantify Amazonian carbon emissions (2010–2018). The region was a small carbon source to the atmosphere, mostly due to fire emissions. Forest uptake compensated for ~ 50 % of the fire emissions, meaning that the remaining forest is still a small carbon sink. We found no clear evidence of weakening carbon uptake over the period.
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Yan Yang, A. Anthony Bloom, Shuang Ma, Paul Levine, Alexander Norton, Nicholas C. Parazoo, John T. Reager, John Worden, Gregory R. Quetin, T. Luke Smallman, Mathew Williams, Liang Xu, and Sassan Saatchi
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Short summary
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Global carbon and water have large uncertainties that are hard to quantify in current regional and global models. Field observations provide opportunities for better calibration and validation of current modeling of carbon and water. With the unique structure of CARDAMOM, we have utilized the data assimilation capability and designed the benchmarking framework by using field observations in modeling. Results show that data assimilation improves model performance in different aspects.
Stephanie G. Stettz, Nicholas C. Parazoo, A. Anthony Bloom, Peter D. Blanken, David R. Bowling, Sean P. Burns, Cédric Bacour, Fabienne Maignan, Brett Raczka, Alexander J. Norton, Ian Baker, Mathew Williams, Mingjie Shi, Yongguang Zhang, and Bo Qiu
Biogeosciences, 19, 541–558, https://doi.org/10.5194/bg-19-541-2022, https://doi.org/10.5194/bg-19-541-2022, 2022
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Uncertainty in the response of photosynthesis to temperature poses a major challenge to predicting the response of forests to climate change. In this paper, we study how photosynthesis in a mountainous evergreen forest is limited by temperature. This study highlights that cold temperature is a key factor that controls spring photosynthesis. Including the cold-temperature limitation in an ecosystem model improved its ability to simulate spring photosynthesis.
Thomas Luke Smallman, David Thomas Milodowski, Eráclito Sousa Neto, Gerbrand Koren, Jean Ometto, and Mathew Williams
Earth Syst. Dynam., 12, 1191–1237, https://doi.org/10.5194/esd-12-1191-2021, https://doi.org/10.5194/esd-12-1191-2021, 2021
Short summary
Short summary
Our study provides a novel assessment of model parameter, structure and climate change scenario uncertainty contribution to future predictions of the Brazilian terrestrial carbon stocks to 2100. We calibrated (2001–2017) five models of the terrestrial C cycle of varied structure. The calibrated models were then projected to 2100 under multiple climate change scenarios. Parameter uncertainty dominates overall uncertainty, being ~ 40 times that of either model structure or climate change scenario.
Caroline A. Famiglietti, T. Luke Smallman, Paul A. Levine, Sophie Flack-Prain, Gregory R. Quetin, Victoria Meyer, Nicholas C. Parazoo, Stephanie G. Stettz, Yan Yang, Damien Bonal, A. Anthony Bloom, Mathew Williams, and Alexandra G. Konings
Biogeosciences, 18, 2727–2754, https://doi.org/10.5194/bg-18-2727-2021, https://doi.org/10.5194/bg-18-2727-2021, 2021
Short summary
Short summary
Model uncertainty dominates the spread in terrestrial carbon cycle predictions. Efforts to reduce it typically involve adding processes, thereby increasing model complexity. However, if and how model performance scales with complexity is unclear. Using a suite of 16 structurally distinct carbon cycle models, we find that increased complexity only improves skill if parameters are adequately informed. Otherwise, it can degrade skill, and an intermediate-complexity model is optimal.
A. Anthony Bloom, Kevin W. Bowman, Junjie Liu, Alexandra G. Konings, John R. Worden, Nicholas C. Parazoo, Victoria Meyer, John T. Reager, Helen M. Worden, Zhe Jiang, Gregory R. Quetin, T. Luke Smallman, Jean-François Exbrayat, Yi Yin, Sassan S. Saatchi, Mathew Williams, and David S. Schimel
Biogeosciences, 17, 6393–6422, https://doi.org/10.5194/bg-17-6393-2020, https://doi.org/10.5194/bg-17-6393-2020, 2020
Short summary
Short summary
We use a model of the 2001–2015 tropical land carbon cycle, with satellite measurements of land and atmospheric carbon, to disentangle lagged and concurrent effects (due to past and concurrent meteorological events, respectively) on annual land–atmosphere carbon exchanges. The variability of lagged effects explains most 2001–2015 inter-annual carbon flux variations. We conclude that concurrent and lagged effects need to be accurately resolved to better predict the world's land carbon sink.
Sophie Flack-Prain, Patrick Meir, Yadvinder Malhi, Thomas Luke Smallman, and Mathew Williams
Biogeosciences, 16, 4463–4484, https://doi.org/10.5194/bg-16-4463-2019, https://doi.org/10.5194/bg-16-4463-2019, 2019
Short summary
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Across the Amazon rainforest, trees take in carbon through photosynthesis. However, photosynthesis across the basin is threatened by predicted shifts in rainfall patterns. To unpick how changes in rainfall affect photosynthesis, we use a model which combines climate data with our knowledge of photosynthesis and other plant processes. We find that stomatal constraints are less important, and instead shifts in leaf surface area and leaf properties drive changes in photosynthesis with rainfall.
Efrén López-Blanco, Jean-François Exbrayat, Magnus Lund, Torben R. Christensen, Mikkel P. Tamstorf, Darren Slevin, Gustaf Hugelius, Anthony A. Bloom, and Mathew Williams
Earth Syst. Dynam., 10, 233–255, https://doi.org/10.5194/esd-10-233-2019, https://doi.org/10.5194/esd-10-233-2019, 2019
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The terrestrial CO2 exchange in Arctic ecosystems plays an important role in the global carbon cycle and is particularly sensitive to the ongoing warming experienced in recent years. To improve our understanding of the atmosphere–biosphere interplay, we evaluated the state of the terrestrial pan-Arctic carbon cycling using a promising data assimilation system in the first 15 years of the 21st century. This is crucial when it comes to making predictions about the future state of the carbon cycle.
Vasileios Myrgiotis, Mathew Williams, Robert M. Rees, and Cairistiona F. E. Topp
Biogeosciences, 16, 1641–1655, https://doi.org/10.5194/bg-16-1641-2019, https://doi.org/10.5194/bg-16-1641-2019, 2019
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This study focuses on a northwestern European cropland region and shows that the type of crop growing on a soil has notable effects on the emission of nitrous oxide (N2O – a greenhouse gas) from that soil. It was found that N2O emissions from soils under oilseed cultivation are significantly higher than soils under cereal cultivation. This variation is mostly explained by the fact that oilseeds require more nitrogen (fertiliser) than cereals, especially at early crop growth stages.
Anne Sofie Lansø, Thomas Luke Smallman, Jesper Heile Christensen, Mathew Williams, Kim Pilegaard, Lise-Lotte Sørensen, and Camilla Geels
Biogeosciences, 16, 1505–1524, https://doi.org/10.5194/bg-16-1505-2019, https://doi.org/10.5194/bg-16-1505-2019, 2019
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Although coastal regions only amount to 7 % of the global oceans, their contribution to the global oceanic surface exchange of CO2 is much greater. In this study, we gain detailed insight into how these coastal marine fluxes compare to CO2 exchange from coastal land regions. Annually, the coastal marine exchanges are smaller than the total uptake of CO2 from the land surfaces within the study area but comparable in size to terrestrial fluxes from individual land cover classes of the region.
Emily D. White, Matthew Rigby, Mark F. Lunt, T. Luke Smallman, Edward Comyn-Platt, Alistair J. Manning, Anita L. Ganesan, Simon O'Doherty, Ann R. Stavert, Kieran Stanley, Mathew Williams, Peter Levy, Michel Ramonet, Grant L. Forster, Andrew C. Manning, and Paul I. Palmer
Atmos. Chem. Phys., 19, 4345–4365, https://doi.org/10.5194/acp-19-4345-2019, https://doi.org/10.5194/acp-19-4345-2019, 2019
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Understanding carbon dioxide (CO2) fluxes from the terrestrial biosphere on a national scale is important for evaluating land use strategies to mitigate climate change. We estimate emissions of CO2 from the UK biosphere using atmospheric data in a top-down approach. Our findings show that bottom-up estimates from models of biospheric fluxes overestimate the amount of CO2 uptake in summer. This suggests these models wrongly estimate or omit key processes, e.g. land disturbance due to harvest.
Jean-François Exbrayat, A. Anthony Bloom, Pete Falloon, Akihiko Ito, T. Luke Smallman, and Mathew Williams
Earth Syst. Dynam., 9, 153–165, https://doi.org/10.5194/esd-9-153-2018, https://doi.org/10.5194/esd-9-153-2018, 2018
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We use global observations of current terrestrial net primary productivity (NPP) to constrain the uncertainty in large ensemble 21st century projections of NPP under a "business as usual" scenario using a skill-based multi-model averaging technique. Our results show that this procedure helps greatly reduce the uncertainty in global projections of NPP. We also identify regions where uncertainties in models and observations remain too large to confidently conclude a sign of the change of NPP.
Rhys Whitley, Jason Beringer, Lindsay B. Hutley, Gabriel Abramowitz, Martin G. De Kauwe, Bradley Evans, Vanessa Haverd, Longhui Li, Caitlin Moore, Youngryel Ryu, Simon Scheiter, Stanislaus J. Schymanski, Benjamin Smith, Ying-Ping Wang, Mathew Williams, and Qiang Yu
Biogeosciences, 14, 4711–4732, https://doi.org/10.5194/bg-14-4711-2017, https://doi.org/10.5194/bg-14-4711-2017, 2017
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This paper attempts to review some of the current challenges faced by the modelling community in simulating the behaviour of savanna ecosystems. We provide a particular focus on three dynamic processes (phenology, root-water access, and fire) that are characteristic of savannas, which we believe are not adequately represented in current-generation terrestrial biosphere models. We highlight reasons for these misrepresentations, possible solutions and a future direction for research in this area.
Efrén López-Blanco, Magnus Lund, Mathew Williams, Mikkel P. Tamstorf, Andreas Westergaard-Nielsen, Jean-François Exbrayat, Birger U. Hansen, and Torben R. Christensen
Biogeosciences, 14, 4467–4483, https://doi.org/10.5194/bg-14-4467-2017, https://doi.org/10.5194/bg-14-4467-2017, 2017
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An improvement in our process-based understanding of CO2 exchanges in the Arctic and their climate sensitivity is critical. With continued warming temperatures and longer growing seasons, tundra systems will likely increase rates of C cycling, although shifts in sink strength could take place, challenging the forecast of upcoming C states. In this context, we investigated the functional responses of C exchange to environmental characteristics across 8 consecutive years in West Greenland.
Darren Slevin, Simon F. B. Tett, Jean-François Exbrayat, A. Anthony Bloom, and Mathew Williams
Geosci. Model Dev., 10, 2651–2670, https://doi.org/10.5194/gmd-10-2651-2017, https://doi.org/10.5194/gmd-10-2651-2017, 2017
Rhys Whitley, Jason Beringer, Lindsay B. Hutley, Gab Abramowitz, Martin G. De Kauwe, Remko Duursma, Bradley Evans, Vanessa Haverd, Longhui Li, Youngryel Ryu, Benjamin Smith, Ying-Ping Wang, Mathew Williams, and Qiang Yu
Biogeosciences, 13, 3245–3265, https://doi.org/10.5194/bg-13-3245-2016, https://doi.org/10.5194/bg-13-3245-2016, 2016
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In this study we assess how well terrestrial biosphere models perform at predicting water and carbon cycling for savanna ecosystems. We apply our models to five savanna sites in Northern Australia and highlight key causes for model failure. Our assessment of model performance uses a novel benchmarking system that scores a model’s predictive ability based on how well it is utilizing its driving information. On average, we found the models as a group display only moderate levels of performance.
C. Safta, D. M. Ricciuto, K. Sargsyan, B. Debusschere, H. N. Najm, M. Williams, and P. E. Thornton
Geosci. Model Dev., 8, 1899–1918, https://doi.org/10.5194/gmd-8-1899-2015, https://doi.org/10.5194/gmd-8-1899-2015, 2015
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In this paper we propose a probabilistic framework for an uncertainty quantification study of a carbon cycle model and focus on the comparison between steady-state and transient
simulation setups. We study model parameters via global sensitivity analysis and employ a Bayesian approach to calibrate these parameters using NEE observations at the Harvard Forest site. The calibration results are then used to assess the predictive skill of the model via posterior predictive checks.
L. Rowland, A. Harper, B. O. Christoffersen, D. R. Galbraith, H. M. A. Imbuzeiro, T. L. Powell, C. Doughty, N. M. Levine, Y. Malhi, S. R. Saleska, P. R. Moorcroft, P. Meir, and M. Williams
Geosci. Model Dev., 8, 1097–1110, https://doi.org/10.5194/gmd-8-1097-2015, https://doi.org/10.5194/gmd-8-1097-2015, 2015
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This study evaluates the capability of five vegetation models to simulate the response of forest productivity to changes in temperature and drought, using data collected from an Amazonian forest. This study concludes that model consistencies in the responses of net canopy carbon production to temperature and precipitation change were the result of inconsistently modelled leaf-scale process responses and substantial variation in modelled leaf area responses.
A. A. Bloom and M. Williams
Biogeosciences, 12, 1299–1315, https://doi.org/10.5194/bg-12-1299-2015, https://doi.org/10.5194/bg-12-1299-2015, 2015
D. Slevin, S. F. B. Tett, and M. Williams
Geosci. Model Dev., 8, 295–316, https://doi.org/10.5194/gmd-8-295-2015, https://doi.org/10.5194/gmd-8-295-2015, 2015
G. B. Bonan, M. Williams, R. A. Fisher, and K. W. Oleson
Geosci. Model Dev., 7, 2193–2222, https://doi.org/10.5194/gmd-7-2193-2014, https://doi.org/10.5194/gmd-7-2193-2014, 2014
R. Q. Thomas and M. Williams
Geosci. Model Dev., 7, 2015–2037, https://doi.org/10.5194/gmd-7-2015-2014, https://doi.org/10.5194/gmd-7-2015-2014, 2014
G. Xenakis and M. Williams
Geosci. Model Dev., 7, 1519–1533, https://doi.org/10.5194/gmd-7-1519-2014, https://doi.org/10.5194/gmd-7-1519-2014, 2014
T. L. Smallman, M. Williams, and J. B. Moncrieff
Biogeosciences, 11, 735–747, https://doi.org/10.5194/bg-11-735-2014, https://doi.org/10.5194/bg-11-735-2014, 2014
T. L. Smallman, J. B. Moncrieff, and M. Williams
Geosci. Model Dev., 6, 1079–1093, https://doi.org/10.5194/gmd-6-1079-2013, https://doi.org/10.5194/gmd-6-1079-2013, 2013
Related subject area
Biogeosciences
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Quantifying the role of ozone-caused damage to vegetation in the Earth system: A new parameterization scheme for photosynthetic and stomatal responses
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
DeepPhenoMem V1.0: Deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
Exploring the Potential of History Matching for Land Surface Model Calibration
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
EAT v0.9.6: a 1D testbed for physical-biogeochemical data assimilation in natural waters
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water, and nitrogen perturbations
A novel Eulerian model based on central moments to simulate age and reactivity continua interacting with mixing processes
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO, and NH3 emissions from enhanced rock weathering with croplands
Assimilation of Carbonyl Sulfide (COS) fluxes within the adjoint-based data assimilation system–Nanjing University Carbon Assimilation System (NUCAS v1.0)
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
Modeling of non-structural carbohydrate dynamics by the spatially explicit individual-based dynamic global vegetation model SEIB-DGVM (SEIB-DGVM-NSC version 1.0)
Implementing a coral reef CaCO3 production module in the iLOVECLIM climate model
MEDFATE 2.9.3: a trait-enabled model to simulate Mediterranean forest function and dynamics at regional scales
Modelling the role of livestock grazing in C and N cycling in grasslands with LPJmL5.0-grazing
Implementation of trait-based ozone plant sensitivity in the Yale Interactive terrestrial Biosphere model v1.0 to assess global vegetation damage
The Permafrost and Organic LayEr module for Forest Models (POLE-FM) 1.0
CompLaB v1.0: a scalable pore-scale model for flow, biogeochemistry, microbial metabolism, and biofilm dynamics
Validation of a new spatially explicit process-based model (HETEROFOR) to simulate structurally and compositionally complex forest stands in eastern North America
Global agricultural ammonia emissions simulated with the ORCHIDEE land surface model
ForamEcoGEnIE 2.0: incorporating symbiosis and spine traits into a trait-based global planktic foraminiferal model
FABM-NflexPD 2.0: testing an instantaneous acclimation approach for modeling the implications of phytoplankton eco-physiology for the carbon and nutrient cycles
Evaluating the vegetation–atmosphere coupling strength of ORCHIDEE land surface model (v7266)
Non-Redfieldian carbon model for the Baltic Sea (ERGOM version 1.2) – implementation and budget estimates
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-6, https://doi.org/10.5194/gmd-2024-6, 2024
Revised manuscript accepted for GMD
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This study introduces a new scheme to simulate surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal response to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander Winkler
EGUsphere, https://doi.org/10.5194/egusphere-2024-464, https://doi.org/10.5194/egusphere-2024-464, 2024
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Our study employs Long Short-Term Memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlocking the secrets of vegetation phenology responses to climate change with deep learning techniques.
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
EGUsphere, https://doi.org/10.5194/egusphere-2023-2996, https://doi.org/10.5194/egusphere-2023-2996, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. Here we test a technique called “History matching” against more common approaches. This method adapts well to these models, helping better understand how they work and therefore how to make them more realistic.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-242, https://doi.org/10.5194/gmd-2023-242, 2024
Revised manuscript accepted for GMD
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems as the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
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This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-238, https://doi.org/10.5194/gmd-2023-238, 2023
Revised manuscript accepted for GMD
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through “data assimilation”, which blends numerical models and observations. Here, we present EAT, a flexible and efficient testbed that allows any scientist to explore and further develop the state-of-the-art in data assimilation.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
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We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
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Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
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The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
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We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
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Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
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We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
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Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
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In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
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Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
EGUsphere, https://doi.org/10.5194/egusphere-2023-1955, https://doi.org/10.5194/egusphere-2023-1955, 2023
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In this work, Nanjing University Carbon Assimilation System (NUCAS) was developed. Data assimilation experiments were conducted to demonstrate the robustness and to investigate the feasibility and applicability of NUCAS. The assimilation of COS significantly improved the model performance in gross primary productivity, sensible heat, latent heat and even soil moisture, demonstrating that COS can provide strong constraints on parameters relevant to water, energy and carbon processes.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
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This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
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Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
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Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
EGUsphere, https://doi.org/10.5194/egusphere-2023-1162, https://doi.org/10.5194/egusphere-2023-1162, 2023
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon-climate model and its validation in comparison to existing modern data.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
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Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
Jens Heinke, Susanne Rolinski, and Christoph Müller
Geosci. Model Dev., 16, 2455–2475, https://doi.org/10.5194/gmd-16-2455-2023, https://doi.org/10.5194/gmd-16-2455-2023, 2023
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We develop a livestock module for the global vegetation model LPJmL5.0 to simulate the impact of grazing dairy cattle on carbon and nitrogen cycles in grasslands. A novelty of the approach is that it accounts for the effect of feed quality on feed uptake and feed utilization by animals. The portioning of dietary nitrogen into milk, feces, and urine shows very good agreement with estimates obtained from animal trials.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina M. Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander W. Cheesman, Yansen Xu, and Maria Carolina Duran Rojas
Geosci. Model Dev., 16, 2261–2276, https://doi.org/10.5194/gmd-16-2261-2023, https://doi.org/10.5194/gmd-16-2261-2023, 2023
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Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained nor fully implemented in large-scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP, with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Winslow D. Hansen, Adrianna Foster, Benjamin Gaglioti, Rupert Seidl, and Werner Rammer
Geosci. Model Dev., 16, 2011–2036, https://doi.org/10.5194/gmd-16-2011-2023, https://doi.org/10.5194/gmd-16-2011-2023, 2023
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Permafrost and the thick soil-surface organic layers that insulate permafrost are important controls of boreal forest dynamics and carbon cycling. However, both are rarely included in process-based vegetation models used to simulate future ecosystem trajectories. To address this challenge, we developed a computationally efficient permafrost and soil organic layer module that operates at fine spatial (1 ha) and temporal (daily) resolutions.
Heewon Jung, Hyun-Seob Song, and Christof Meile
Geosci. Model Dev., 16, 1683–1696, https://doi.org/10.5194/gmd-16-1683-2023, https://doi.org/10.5194/gmd-16-1683-2023, 2023
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Microbial activity responsible for many chemical transformations depends on environmental conditions. These can vary locally, e.g., between poorly connected pores in porous media. We present a modeling framework that resolves such small spatial scales explicitly, accounts for feedback between transport and biogeochemical conditions, and can integrate state-of-the-art representations of microbes in a computationally efficient way, making it broadly applicable in science and engineering use cases.
Arthur Guignabert, Quentin Ponette, Frédéric André, Christian Messier, Philippe Nolet, and Mathieu Jonard
Geosci. Model Dev., 16, 1661–1682, https://doi.org/10.5194/gmd-16-1661-2023, https://doi.org/10.5194/gmd-16-1661-2023, 2023
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Spatially explicit and process-based models are useful to test innovative forestry practices under changing and uncertain conditions. However, their larger use is often limited by the restricted range of species and stand structures they can reliably account for. We therefore calibrated and evaluated such a model, HETEROFOR, for 23 species across southern Québec. Our results showed that the model is robust and can predict accurately both individual tree growth and stand dynamics in this region.
Maureen Beaudor, Nicolas Vuichard, Juliette Lathière, Nikolaos Evangeliou, Martin Van Damme, Lieven Clarisse, and Didier Hauglustaine
Geosci. Model Dev., 16, 1053–1081, https://doi.org/10.5194/gmd-16-1053-2023, https://doi.org/10.5194/gmd-16-1053-2023, 2023
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Ammonia mainly comes from the agricultural sector, and its volatilization relies on environmental variables. Our approach aims at benefiting from an Earth system model framework to estimate it. By doing so, we represent a consistent spatial distribution of the emissions' response to environmental changes.
We greatly improved the seasonal cycle of emissions compared with previous work. In addition, our model includes natural soil emissions (that are rarely represented in modeling approaches).
Rui Ying, Fanny M. Monteiro, Jamie D. Wilson, and Daniela N. Schmidt
Geosci. Model Dev., 16, 813–832, https://doi.org/10.5194/gmd-16-813-2023, https://doi.org/10.5194/gmd-16-813-2023, 2023
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Planktic foraminifera are marine-calcifying zooplankton; their shells are widely used to measure past temperature and productivity. We developed ForamEcoGEnIE 2.0 to simulate the four subgroups of this organism. We found that the relative abundance distribution agrees with marine sediment core-top data and that carbon export and biomass are close to sediment trap and plankton net observations respectively. This model provides the opportunity to study foraminiferal ecology in any geological era.
Onur Kerimoglu, Markus Pahlow, Prima Anugerahanti, and Sherwood Lan Smith
Geosci. Model Dev., 16, 95–108, https://doi.org/10.5194/gmd-16-95-2023, https://doi.org/10.5194/gmd-16-95-2023, 2023
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In classical models that track the changes in the elemental composition of phytoplankton, additional state variables are required for each element resolved. In this study, we show how the behavior of such an explicit model can be approximated using an
instantaneous acclimationapproach, in which the elemental composition of the phytoplankton is assumed to adjust to an optimal value instantaneously. Through rigorous tests, we evaluate the consistency of this scheme.
Yuan Zhang, Devaraju Narayanappa, Philippe Ciais, Wei Li, Daniel Goll, Nicolas Vuichard, Martin G. De Kauwe, Laurent Li, and Fabienne Maignan
Geosci. Model Dev., 15, 9111–9125, https://doi.org/10.5194/gmd-15-9111-2022, https://doi.org/10.5194/gmd-15-9111-2022, 2022
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There are a few studies to examine if current models correctly represented the complex processes of transpiration. Here, we use a coefficient Ω, which indicates if transpiration is mainly controlled by vegetation processes or by turbulence, to evaluate the ORCHIDEE model. We found a good performance of ORCHIDEE, but due to compensation of biases in different processes, we also identified how different factors control Ω and where the model is wrong. Our method is generic to evaluate other models.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
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Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Cited articles
Beers, C., Ciais, P.,
Reichstein, M., Baldocchi, D., Law, B. E., Papale, D, Soussana, J.
F., Ammann, C., Buchmann, N., Frank, D., Gianelle, D., Janssens, I. A, Knohl,
A., Koestner, B., Moors, E., Roupsard, O., Verbeeck, H., Vesala, T., Williams, C. A., and Wohlfahrt, G.: Temporal and among-site variability of inherent water use efficiency at the ecosystem level, Global Biogeochem. Cy., 23, GB2018, https://doi.org/10.1029/2008GB003233, 2009. a, b
Bloom, A. A., Exbrayat, J.-F., van der Velde, I. R., Feng, L., and Williams, M.: The decadal state of the terrestrial carbon cycle: Global
retrievals of terrestrial carbon allocation, pools, and residence times,
P. Natl. Acad. Sci. USA, 113, 1285–1290,
https://doi.org/10.1073/pnas.1515160113, 2016. a, b, c, d, e, f, g, h
Blyth, E. M. and Daamen, C. C.: The accuracy of simple soil water models in climate forecasting, Hydrol. Earth Syst. Sci., 1, 241–248, https://doi.org/10.5194/hess-1-241-1997, 1997. a
Bonan, G. B. and Doney, S. C.: Climate, ecosystems, and planetary futures: The challenge to predict life in Earth system models,
Science, 359, 6375, https://doi.org/10.1126/science.aam8328, 2008. a, b, c
Bonan, G. B., Williams, M., Fisher, R. A., and Oleson, K. W.: Modeling stomatal conductance in the earth system: linking leaf water-use efficiency and water transport along the soil–plant–atmosphere continuum, Geosci. Model Dev., 7, 2193–2222, https://doi.org/10.5194/gmd-7-2193-2014, 2014. a, b, c, d, e, f, g, h, i, j, k, l, m, n, o
Bonan, G. B., Patton, E. G., Harman, I. N., Oleson, K. W., Finnigan, J. J., Lu, Y., and Burakowski, E. A.: Modeling canopy-induced turbulence in the Earth system: a unified parameterization of turbulent exchange within plant canopies and the roughness sublayer (CLM-ml v0), Geosci. Model Dev., 11, 1467–1496, https://doi.org/10.5194/gmd-11-1467-2018, 2018. a
Buckley, T. N., Cescatti, A., and Farquhar, G. D.: What does optimization theory actually predict about crown profiles of photosynthetic capacity when models incorporate greater realism?, Plant Cell Environ., 36,
1547–1563, https://doi.org/10.1111/pce.12091, 2013. a
Chen, F., Crow, W. T., Bindlish, R., Colliander, A., Burgin, M. S., Asanuma, J., and Aida, K.: Global-scale evaluation of SMAP, SMOIS, ASCAT soil moisture products, Remote Sens. Environ., 214,
1–13, https://doi.org/10.1016/j.rse.2018.05.008, 2018. a
Coble, A. P., VanderWall, B., Mau, A., and Cavaleri, M. A.: How vertical patterns in leaf traits shift seasonally and the implications for modelling canopy photosynthesis in a temperate deciduous forest, Tree Physiol., 36,
1077–1091, https://doi.org/https://doi.org/10.1093/treephys/tpw043, 2016. a
Collatz, G., Ball, J., Grivet, C., and Berry, J.:
Physiological and environmental-regulation of stomatal conductance, photosynthesis and transpiration – a model that includes laminar
boundary-layer, Agr. Forest Meteorol., 54, 107–136, https://doi.org/10.1016/0168-1923(91)90002-8, 1991. a
Dee, D. P., Uppala, S. M., Simmons, A. J., Berrisford, P., Poli, P., Kobayashi,
S., Andrae, U., Balmaseda, M. A., Balsamo, G., Bauer, P., Bechtold, P., Beljaars, A. C. M., van de Berg, L., Bidlot, J., Bormann, N., Delsol, C., Dragani, R., Fuentes, M., Geer, A. J., Haimberger, L., Healy, S. B., Hersbach, H., Hólm, E. V., Isaksen, L.,
Kållberg, P., Köhler, M., Matricardi, M., McNally, A. P., Monge-Sanz, B. M., Morcrette, J.-J., Park, B.-K., Peubey, C., de
Rosnay, P., Tavolato, C., Thépaut, J.-N., and Vitart, F.: The ERA-Interim reanalysis: configuration and performance of the data assimilation
system, Q. J. Roy. Meteor. Soc., 137, 553–597, https://doi.org/10.1002/qj.828, 2011. a, b, c
Fan, Y., Miguez-Macho, G., Jobbágy, E. G., Jackson, R. B., and Otero-Casal, C.: Hydrologic regulation of plant rooting depth, P. Natl. Acad. Sci. USA, 114, 10572–10577, https://doi.org/10.1073/pnas.1712381114, 2017. a
Fer, I., Kelly, R., Moorcroft, P. R., Richardson, A. D., Cowdery, E. M., and Dietze, M. C.: Linking big models to big data: efficient ecosystem model calibration through Bayesian model emulation, Biogeosciences, 15, 5801–5830, https://doi.org/10.5194/bg-15-5801-2018, 2018. a
Fisher, R. A., Williams, M., Do Vale, R. L., Da Costa, A. L., and Meir, P.:
Evidence from Amazonian forests is consistent with isohydric control of leaf water potential, Plant Cell Environ., 29, 151–165, https://doi.org/10.1111/j.1365-3040.2005.01407.x, 2006. a
Fisher, R. A., Williams, M., Da Costa, A. L., Malhi, Y., Da Costa, R. F., Almeida, S. and Meir, P.:
The response of an Eastern Amazonian rain forest to drought stress: results and modelling analyses from a throughfall exclusion experiment, Glob. Change Biol., 13, 2361–2378, https://doi.org/10.1111/j.1365-2486.2007.01417.x, 2007. a
Fox, A., Williams, M., Richardson, A. D., Cameron, D., Gove, J. H., Quaife, T., Ricciuto, D., Reichstein, M., Tomelleri, E., Trudinger, C. M., and Van Wijk, M. T.:
The REFLEX project: Comparing different algorithms and implementations
for the inversion of a terrestrial ecosystem model against eddy
covariance data,
Agr. Forest Meteorol., 149, 1597–1615, 2009. a
Ghimire, B., Riley, W. J., Koven, C. D., Kattge, J., Rodgers, A., Reich, P., and Wright, I. J.: A global trait-based approach to estimate leaf nitrogen functional allocation from observations, Ecol. Appl., 27, 1421–1434, 2017.
Harman, I. N. and Finnigan, J. J.: A simple unified theory for flow in
the canopy and roughness sublayer, Bound.-Lay. Meteorol., 123,
339–363, 2007.
Harper, A. B., Cox, P. M., Friedlingstein, P., Wiltshire, A. J., Jones, C. D., Sitch, S., Mercado, L. M., Groenendijk, M., Robertson, E., Kattge, J., Bönisch, G., Atkin, O. K., Bahn, M., Cornelissen, J., Niinemets, Ü., Onipchenko, V., Peñuelas, J., Poorter, L., Reich, P. B., Soudzilovskaia, N. A., and Bodegom, P. V.: Improved representation of plant functional types and physiology in the Joint UK Land Environment Simulator (JULES v4.2) using plant trait information, Geosci. Model Dev., 9, 2415–2440, https://doi.org/10.5194/gmd-9-2415-2016, 2016. a
Hiederer, R., and Köchy, M., Global soil organic carbon estimates and
the harmonized world soil database, EUR, 79, ISBN: 978-92-79-23108-7,
https://doi.org/10.2788/13267, 2011. a, b
Johnson, D. M., Berry, Z. C., Baker, K. V., Smith, D. D., McCulloch, K. A., and Domec, J. C.: Leaf hydraulic parameters are more plastic in species that experience a wider range of leaf water potentials, Funct. Ecol., 32, 894–903, 2018. a
Jung, M., Reichstein, M., Margolis, H. A., Cescatti,
A., Richardson, A. D., Arain, M. A., Arneth,
A., Bernhofer, C., Bonal, D., Chen, J.,
Gianelle, D., Gobron, N., Kiely, G., Kutsch,
W., Lasslop, G., Law, B. E., Lindroth, A.,
Merbold, L., Montagnani, L., Moors, E. J., Papale,
D., Sottocornola, M., Vaccari, F., and Williams,
C.: Global patterns of land-atmosphere fluxes of carbon dioxide, latent
heat, and sensible heat derived from eddy covariance, satellite, and
meteorological observations, J. Geophys. Res-Biogeo., 116, G00J07, https://doi.org/10.1029/2010JG001566, 2011. a, b, c
Kaimal, J. C. and Finnigan, J. J.: Atmospheric Boundary Layer Flows: Their Structure
and Measurement, Oxford University Press, 200 Madison Avenue, NY 10016, USA and Oxford University, Oxford UK, 1994. a
Kattge, J., Dìaz, S., Lavorel, S., Prentice, I. C., Leadley, P., Bönisch, G., Garnier, E., Westoby, M., Reich, P. B., Wright, I. J., Cornelissen, J. H. C., Violle, C., Harrison, S. P., Van Bodegom, P. M., Reichstein, M., Enquist, B. J., Soudzilovskaia, N. A., Ackerly, D. D., Anand, M., Atkin, O., Bahn M., Baker, T. R., Baldocchi, D., Bekker, R., Blanco, C. C., Blonder, B., Bond W. J., Bradstock, R., Bunker, D. E., Casanoves, F., Cavender-Bares, J., Chambers, J. Q., Chapin III, F. S., Chave, J., Coomes, D., Cornwell, W. K., Craine, J. M., Dobrin, B. H., Duarte, L., Durka, W., Elser, J., Esser, G., Estiarte, M., Fagan W. F., Fang, J., Fernàndez-Mèndez, F., Fidelis, A., Finegan, B., Flores, O., Ford, H., Frank, D., Freschet, G. T., Fyllas, N. M., Gallagher, R. V., Green, W. A., Gutierrez, A. G., Hickler, T., Higgins, S. I., Hodgson, J. G., Jalili, A., Jansen, S., Joly, C. A., Kerkhoff, A. J., Kirkup, D., Kitajima, K., Kleyer, M., Klotz, S., Knops, J. M. H., Kramer, K., Kühn, I., Kurokawa, H., Laughlin, D., Lee, T. D., Leishman, M., Lens, F., Lenz, T., Lewis, S. L., Lloyd, J., Llisià, J., Louault, F., Ma, S., Mahecha, M. D., Manning, P., Massad, T., Medlyn, B. E., Messier, J., Moles, A. T., Müller, S. C., Nadrowski, K., Naeem, S., Niinemets, Ü., Nöllert, S., Nüske, A., Ogaya, R., Oleksyn, J., Onipchenko, V. G., Onoda, Y., Ordoñez, J., Overbeck, G., Ozinga, W. A., Patiño, S., Paula, S., Pausas, J. G., Peñuelas, J., Phillips, O. L., Pillar, V., Poorter, H., Poorter, L., Poschlod, P., Prinzing, A., Proulx, R., Rammig, A., Reinsch, S., Reu, B., Sack, L., Salgado-Negret, B., Sardans, J., Shiodera, S., Shipley, B., Siefert, A., Sosinski, E., Soussana, J.-F., Swaine, E., Swenson, N., Thompson, K., Thornton, P., Waldram, M., Weiher, E., White, M., White, S., Wright, S. J., Yguel, B., Zaehle, S., Zanne, A. E., and Wirth, C.: TRY? a global database of plant traits, Glob. Change Biol., 17, 2905–2935, https://doi.org/10.1111/j.1365-2486.2011.02451.x, 2011. a, b
Keenan, T. F., Hollinger, D. Y., Bohrer, G., Dragoni, D., Munger, J. W., Schmid, H. P., and Richardson, A. D.: Increase in forest water-use efficiency as atmospheric carbon dioxide concentrations rise, Nature, 499, 7458, https://doi.org/10.1038/nature12291, 2013. a
Knauer, J., Zaehle, S.,
Reichstein, M., Medlyn, B. E., Forkel, M., Hagemann, S., and Werner, C.: The response of ecosystem water-use efficiency to rising atmospheric CO2
concentrations: sensitivity and large-scale biogeochemical implications, New Phytol., 213, 1654-1666, https://doi.org/10.1111/nph.14288, 2017.
Krinner, G., Viovy, N., de Noblet-Ducoudre, N., Ogee, J.,
Polcher, J., Friedlingstein, P., Ciais, P., Sitch, S., and Prentice,
I. C.: A dynamic global vegetation model for studies of the coupled atmosphere-biosphere system, Global Biogeochem. Cy., 19, GB1015, https://doi.org/10.1029/2003GB002199, 2005. a
Kuppel, S., Peylin, P., Chevallier, F., Bacour, C., Maignan, F., and Richardson, A. D.: Constraining a global ecosystem model with multi-site eddy-covariance data, Biogeosciences, 9, 3757–3776, https://doi.org/10.5194/bg-9-3757-2012, 2012. a
Le Quéré, C., Moriarty, R., Andrew, R. M., Canadell, J. G., Sitch, S., Korsbakken, J. I., Friedlingstein, P., Peters, G. P., Andres, R. J., Boden, T. A., Houghton, R. A., House, J. I., Keeling, R. F., Tans, P., Arneth, A., Bakker, D. C. E., Barbero, L., Bopp, L., Chang, J., Chevallier, F., Chini, L. P., Ciais, P., Fader, M., Feely, R. A., Gkritzalis, T., Harris, I., Hauck, J., Ilyina, T., Jain, A. K., Kato, E., Kitidis, V., Klein Goldewijk, K., Koven, C., Landschützer, P., Lauvset, S. K., Lefèvre, N., Lenton, A., Lima, I. D., Metzl, N., Millero, F., Munro, D. R., Murata, A., Nabel, J. E. M. S., Nakaoka, S., Nojiri, Y., O'Brien, K., Olsen, A., Ono, T., Pérez, F. F., Pfeil, B., Pierrot, D., Poulter, B., Rehder, G., Rödenbeck, C., Saito, S., Schuster, U., Schwinger, J., Séférian, R., Steinhoff, T., Stocker, B. D., Sutton, A. J., Takahashi, T., Tilbrook, B., van der Laan-Luijkx, I. T., van der Werf, G. R., van Heuven, S., Vandemark, D., Viovy, N., Wiltshire, A., Zaehle, S., and Zeng, N.: Global Carbon Budget 2015, Earth Syst. Sci. Data, 7, 349–396, https://doi.org/10.5194/essd-7-349-2015, 2015. a
López-Blanco, E., Lund, M., Christensen, T. R., Tamstorf, M. P., Smallman, T. L., Slevin, D., Westergaard-Nielsen, A., Hansen, B. U., Abermann, J., and Williams, M.:
Plant Traits are Key Determinants in Buffering the Meteorological Sensitivity of Net Carbon Exchanges of Arctic Tundra, J. Geophys. Res.-Biogeo., 123, 2675–2694, https://doi.org/10.1029/2018JG004386, 2018. a
Martens, B., Miralles, D. G., Lievens, H., van der Schalie, R., de Jeu, R. A. M., Fernández-Prieto, D., Beck, H. E., Dorigo, W. A., and Verhoest, N. E. C.: GLEAM v3: satellite-based land evaporation and root-zone soil moisture, Geosci. Model Dev., 10, 1903–1925, https://doi.org/10.5194/gmd-10-1903-2017, 2017. a, b, c, d
Mauder, M., Cuntz, M., Drüe, C., Graf, A., Rebmann, C., Schmid, H. P., Schmidt, M., and Steinbrecher, R.: A strategy for quality and uncertainty assessment of long-term eddy-covariance measurement, Agr. Forest Meteorol., 169, 122–135, 2013. a
Medlyn, B. E, Duursma, R. A., Eamus, D., Ellsworth, D. S., Prentice, I. C., Barton, C. V. M., Crous, K. Y., De Angelis, P., Freeman, M., and Wingate, L.: Reconciling the optimal and empirical approaches to modelling stomatal conductance, Glob. Change Biol., 17, 6, 2134–2144, https://doi.org/10.1111/j.1365-2486.2010.02375.x, 2011. a
Monteith, J. L.: Evaporation and environment, in: Symposia of the Society for Experimental Biology, 19, Cambridge University Press, Cambridge, 205–234, 1965. a
Mu, Q., Zhao, M., and Running, S. W.: Improvements to a MODIS global terrestrial evapotranspiration algorithm, Remote. Sens. Environ., 115, 1781–1800, https://doi.org/10.1016/j.rse.2011.02.019, 2011. a, b, c, d
Niu, G. Y. and Yang, Z. L.: Effects of vegetation canopy processes on snow surface energy and
mass,J. Geophys. Res., 109, D23111, https://doi.org/10.1029/2004JD004884, 2004. a
Nolan, R. H., Tarin, T., Santini, N. S., McAdam, S. A. M., Ruman, R., and Eamus, D.: Differences in osmotic adjustment, foliar abscisic acid dynamics, and stomatal regulation between an isohydric and anisohydric
woody angiosperm during drought, Plant Cell Environ., 40, 1365–3040, https://doi.org/10.1111/pce.13077, 2017. a
Oleson, K. W., Lawrence, D. M., Bonan, G. B., Flanner, M. G., Kluzek, E. K., Lawrence, P. J., Levis, S., Swenson, S. C., and
Thornton, P. E.: Technical Description of version 4.0 of the Community Land
Model (CLM), NCAR/TN-478+STR, Climate and Global
Dynamics Division, National Center for Atmospheric Research, Boulder, Colorado, 2010. a
Poyatos, R., Granda, V., Molowny-Horas, R., Mencuccini, M., Steppe, K., and Martinez-Vilalta, J.: SAPFLUXNET: towards a global database of sap flow measurements, Tree Physiol., 36,
1449–1455, https://doi.org/10.1093/treephys/tpw110, 2016. a
Priestley, C. H. B. and Taylor, R. J.: On the assessment of surface heat flux and evaporation using large-scale parameters, Mon. Weather Rev., 100, 81–92, 1992. a
Qin, Z., Berliner, P., and Karnieli, A.: Numerical solution of
a complete surface energy balance model for simulation of heat fluxes and surface temperature under bare soil environment,
Appl. Math. Comput., 130, 171–200, 2002.
Raoult, N. M., Jupp, T. E., Cox, P. M., and Luke, C. M.: Land-surface parameter optimisation using data assimilation techniques: the adJULES system V1.0, Geosci. Model Dev., 9, 2833–2852, https://doi.org/10.5194/gmd-9-2833-2016, 2016. a
Scartazza, A., Di Baccio, D., Bertolotto, P., Gavrichkova, O., and Matteucci, G.: Investigating the European beech (Fagus sylvatica L.) leaf characteristics along the vertical canopy profile: leaf structure, photosynthetic capacity, light energy dissipation and photoprotection mechanisms, Tree Physiol., 36,
1060–1076, https://doi.org/10.1093/treephys/tpw038, 2016. a
Smallman, T. L. and Williams, M.: Aggregated Canopy Model for Gross Primary Productivity and Evapotranspiration (Version 1), [software], University of Edinburgh, National Centre for Earth Observation and School of GeoSciences, https://doi.org/10.7488/ds/2480, 2018. a
Smallman, T. L. and Williams, M.: WeatherGenerator v1, commit 7ec78dc, https://github.com/GCEL/WeatherGenerator_v1/commit/7ec78dc94ca2bafe0d03e1ab04623ca9adbc334b, 2019. a
Smallman, T. L., Moncrieff, J. B., and Williams, M.: WRFv3.2-SPAv2: development and validation of a coupled ecosystem–atmosphere model, scaling from surface fluxes of CO2 and energy to atmospheric profiles, Geosci. Model Dev., 6, 1079–1093, https://doi.org/10.5194/gmd-6-1079-2013, 2013. a, b, c, d, e, f, g, h, i, j, k
Smallman, T. L., Williams, M., and Moncrieff, J. B.: Can seasonal and interannual variation in landscape CO2 fluxes be detected by atmospheric observations of CO2 concentrations made at a tall tower?, Biogeosciences, 11, 735–747, https://doi.org/10.5194/bg-11-735-2014, 2014. a
Smallman, T. L., Exbrayat, J.-F., Mencuccini, M., Bloom, A. A., and Williams, M.: Assimilation of repeated woody biomass observations constrains decadal ecosystem carbon cycle uncertainty in aggrading forests, J. Geophys. Res.-Biogeo., 122, 528–545, https://doi.org/10.1002/2016JG003520, 2017. a, b
Stoy, P. C., Katul, G. G., Siqueira, M. B. S., Juang, J.-Y., Novick, K. A., Uebelherr, J. M., and Oren, R.: An evaluation of models for partitioning
eddy covariance-measured net ecosystem exchange into photosynthesis and
respiration, Agr. Forest Meteorol.,
141, 2–18, https://doi.org/10.1016/j.agrformet.2006.09.001, 2006. a
Sun, Y., Gu, L., Dickinson, R. E., Norby, R. J., Pallardy, S. G., and Hoffman, F. M.: Impact of mesophyll diffusion on estimated global land CO2 fertilization, P. Natl. Acad. Sci. USA, 111, 15774–15779, https://doi.org/10.1073/pnas.1418075111, 2014. a
Sus, O., Williams, M., Bernhofer, C., Beziat, P., Buchmann, N., Ceschia, E., Doherty, R., Eugster, W.,
Gruenwald, T., Kutsch, W., Smith, P., and Wattenbach, M.: A linked carbon cycle and crop developmental model: description and
evaluation against measurements of carbon fluxes and carbon stocks at several European agricultural sites, Agr. Ecosyst. Environ.,
139, 402–418, 2010. a, b
Swann, A. L. S., Hoffman, F. M., Koven, C. D., and Randerson, J. T.: Plant responses to increasing CO2 reduce estimates of climate impacts on drought severity, P. Natl. Acad. Sci. USA, 113, 10019–10024,
https://doi.org/10.1073/pnas.1604581113, 2016.
Thomas, R. Q. and Williams, M.: A model using marginal efficiency of investment to analyze carbon and nitrogen interactions in terrestrial ecosystems (ACONITE Version 1), Geosci. Model Dev., 7, 2015–2037, https://doi.org/10.5194/gmd-7-2015-2014, 2014. a
Tuzet, A., Perrier, A., and Leuning, R.: A coupled model of
stomatal conductance, photosynthesis and transpiration, Plant Cell Environ., 26, 1097–1116,
https://doi.org/10.1046/j.1365-3040.2003.01035.x, 2003. a, b
Wang, L., Zhu, H., Lin, A., Zou, L., Qin, W., and Du, Q.: Evaluation of the Latest MODIS GPP Products across Multiple Biomes Using Global Eddy Covariance Flux Data, Remote Sensing, 9, 418, https://doi.org/10.3390/rs9050418, 2017. a, b, c, d
Way, D. A., Oren, R., and Kroner, Y.: The space-time continuum: the effects of elevated CO2 and temperature on trees and the importance of scaling, Plant Cell Environ., 38,
991–1007, https://doi.org/10.1111/pce.12527, 2015. a
Wei, Z., Yoshimura, K., Wang, L., Miralles, D. G., Jasechko, S., and Lee, X.: Revisiting the contribution of transpiration to global terrestrial evapotranspiration, Geophys. Res. Lett., 44,
2792–2801, https://doi.org/10.1002/2016GL072235, 2017. a, b
Williams, M., Rastetter, E. B., Fernandes, D. N., Goulden, M. L., Wofsy, S. C., Shaver, G. R.,
Melillo, J. M., Munger, J. W., Fan, S. M., and Nadelhoffer, K. J.: Modelling the soil-plant-atmosphere continuum in a Quercus-Acer
stand at Harvard Forest: the regulation of stomatal conductance by light, nitrogen and soil/plant hydraulic properties, Plant Cell Environ., 19, 911–927, 1996. a, b, c, d, e, f, g, h, i, j
Williams, M., Malhi, Y.,
Nobre, A., Rastetter, E., Grace, J., and Pereira, M.: Seasonal variation in
net carbon exchange and evapotranspiration in a Brazilian rain forest:
a modelling analysis, Plant Cell Environ., 21, 953–968,
https://doi.org/10.1046/j.1365-3040.1998.00339.x, 1998. a, b, c, d
Williams, M., Eugster, W.,
Rastetter, E., McFadden, J., and Chapin, F.: The controls on net ecosystem
productivity along an Arctic transect: a model comparison with flux
measurements, Glob. Change Biol., 6, 116–126, 2000.
Wright, I. J., Reich, P. B.,
Westoby, M., Ackerly, D. D., Baruch Z., Bongers, F., Cavender-Bares, J., Chapin T., Cornelissen, J. H. C., Diemer, M., Flexas, J., Garnier, E, Groom, P. K., Gulias, J,
Hikosaka, K., Lamont, B. B., Lee, T., Lee, W., Lusk, C., Midgley, J. J. Navas, M.-L, Niinemets, U., Oleksyn, J., Osada, N., Poorter, H., Poot, P., Prior, L., Pyankov, V. I.,
Roumet, C., Thomas, S. C., Tjoelker, M. G., Veneklaas, E. J., and Villar, R.: The worldwide leaf economics spectrum, Nature, 424, 821–827, https://doi.org/10.1038/nature02403, 2004. a
Yan, K., Park, T., Yan, G., Liu, Z., Yang, B., Chen, C., Nemani, R. R., Knyazikhin, Y., and Myneni, R. B.: Evaluation of MODIS LAI/FPAR Product Collection 6. Part 2: Validation and Intercomparison, Remote Sensing, 8, 460, https://doi.org/10.3390/rs8060460, 2016. a, b
Ziehn, T., Scholze, M., and Knorr, W.: On the capability of Monte Carlo
and adjoint inversion techniques to derive posterior parameter uncertainties
in terrestrial ecosystem models, Global Biogeochem. Cy.,
26, GB3025, https://doi.org/10.1029/2011GB004185, 2012. a
Short summary
Photosynthesis and evapotranspiration are processes with global significance for climate, carbon and water cycling. Process-orientated simulation of these processes and their interactions have till now come at high computational cost. Here we present a new coupled model of intermediate complexity operating at orders of magnitude greater speed. Independent evaluation at FLUXNET sites for a single, global parameterization shows good agreement, with a typical R2 value of ~ 0.60.
Photosynthesis and evapotranspiration are processes with global significance for climate, carbon...
