Articles | Volume 11, issue 2
https://doi.org/10.5194/gmd-11-815-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-11-815-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper
| 
02 Mar 2018
Model description paper |
| 02 Mar 2018
A fire model with distinct crop, pasture, and non-agricultural burning: use of new data and a model-fitting algorithm for FINAL.1
Department of Ecology & Evolutionary Biology, Princeton University, Princeton, NJ, USA
Karlsruhe Institute of Technology, Institute of Meteorology and Climate Research/Atmospheric Environmental
Research, 82467 Garmisch-Partenkirchen, Germany
Daniel S. Ward
GFDL-Princeton University Cooperative Institute for Climate Science, Princeton, NJ, USA
now at: Karen Clark and Company, Boston, Massachusetts, USA
Sergey L. Malyshev
GFDL-Princeton University Cooperative Institute for Climate Science, Princeton, NJ, USA
Brian I. Magi
University of North Carolina at Charlotte, Geography and Earth Sciences Department, Charlotte, NC, USA
Elena Shevliakova
GFDL-Princeton University Cooperative Institute for Climate Science, Princeton, NJ, USA
Stephen W. Pacala
Department of Ecology & Evolutionary Biology, Princeton University, Princeton, NJ, USA
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Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-66, https://doi.org/10.5194/gmd-2023-66, 2023
Revised manuscript accepted for GMD
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Jianyong Ma, Stefan Olin, Peter Anthoni, Sam S. Rabin, Anita D. Bayer, Sylvia S. Nyawira, and Almut Arneth
Geosci. Model Dev., 15, 815–839, https://doi.org/10.5194/gmd-15-815-2022, https://doi.org/10.5194/gmd-15-815-2022, 2022
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The implementation of the biological N fixation process in LPJ-GUESS in this study provides an opportunity to quantify N fixation rates between legumes and to better estimate grain legume production on a global scale. It also helps to predict and detect the potential contribution of N-fixing plants as
green manureto reducing or removing the use of N fertilizer in global agricultural systems, considering different climate conditions, management practices, and land-use change scenarios.
Camelia-Eliza Telteu, Hannes Müller Schmied, Wim Thiery, Guoyong Leng, Peter Burek, Xingcai Liu, Julien Eric Stanislas Boulange, Lauren Seaby Andersen, Manolis Grillakis, Simon Newland Gosling, Yusuke Satoh, Oldrich Rakovec, Tobias Stacke, Jinfeng Chang, Niko Wanders, Harsh Lovekumar Shah, Tim Trautmann, Ganquan Mao, Naota Hanasaki, Aristeidis Koutroulis, Yadu Pokhrel, Luis Samaniego, Yoshihide Wada, Vimal Mishra, Junguo Liu, Petra Döll, Fang Zhao, Anne Gädeke, Sam S. Rabin, and Florian Herz
Geosci. Model Dev., 14, 3843–3878, https://doi.org/10.5194/gmd-14-3843-2021, https://doi.org/10.5194/gmd-14-3843-2021, 2021
Short summary
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We analyse water storage compartments, water flows, and human water use sectors included in 16 global water models that provide simulations for the Inter-Sectoral Impact Model Intercomparison Project phase 2b. We develop a standard writing style for the model equations. We conclude that even though hydrologic processes are often based on similar equations, in the end these equations have been adjusted, or the models have used different values for specific parameters or specific variables.
Stijn Hantson, Douglas I. Kelley, Almut Arneth, Sandy P. Harrison, Sally Archibald, Dominique Bachelet, Matthew Forrest, Thomas Hickler, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Lars Nieradzik, Sam S. Rabin, I. Colin Prentice, Tim Sheehan, Stephen Sitch, Lina Teckentrup, Apostolos Voulgarakis, and Chao Yue
Geosci. Model Dev., 13, 3299–3318, https://doi.org/10.5194/gmd-13-3299-2020, https://doi.org/10.5194/gmd-13-3299-2020, 2020
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Global fire–vegetation models are widely used, but there has been limited evaluation of how well they represent various aspects of fire regimes. Here we perform a systematic evaluation of simulations made by nine FireMIP models in order to quantify their ability to reproduce a range of fire and vegetation benchmarks. While some FireMIP models are better at representing certain aspects of the fire regime, no model clearly outperforms all other models across the full range of variables assessed.
Sam S. Rabin, Peter Alexander, Roslyn Henry, Peter Anthoni, Thomas A. M. Pugh, Mark Rounsevell, and Almut Arneth
Earth Syst. Dynam., 11, 357–376, https://doi.org/10.5194/esd-11-357-2020, https://doi.org/10.5194/esd-11-357-2020, 2020
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We modeled how agricultural performance and demand will shift as a result of climate change and population growth, and how the resulting adaptations will affect aspects of the Earth system upon which humanity depends. We found that the impacts of land use and management can have stronger impacts than climate change on some such
ecosystem services. The overall impacts are strongest in future scenarios with more severe climate change, high population growth, and/or resource-intensive lifestyles.
Fang Li, Maria Val Martin, Meinrat O. Andreae, Almut Arneth, Stijn Hantson, Johannes W. Kaiser, Gitta Lasslop, Chao Yue, Dominique Bachelet, Matthew Forrest, Erik Kluzek, Xiaohong Liu, Stephane Mangeon, Joe R. Melton, Daniel S. Ward, Anton Darmenov, Thomas Hickler, Charles Ichoku, Brian I. Magi, Stephen Sitch, Guido R. van der Werf, Christine Wiedinmyer, and Sam S. Rabin
Atmos. Chem. Phys., 19, 12545–12567, https://doi.org/10.5194/acp-19-12545-2019, https://doi.org/10.5194/acp-19-12545-2019, 2019
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Fire emissions are critical for atmospheric composition, climate, carbon cycle, and air quality. We provide the first global multi-model fire emission reconstructions for 1700–2012, including carbon and 33 species of trace gases and aerosols, based on the nine state-of-the-art global fire models that participated in FireMIP. We also provide information on the recent status and limitations of the model-based reconstructions and identify the main uncertainty sources in their long-term changes.
Derek T. Robinson, Alan Di Vittorio, Peter Alexander, Almut Arneth, C. Michael Barton, Daniel G. Brown, Albert Kettner, Carsten Lemmen, Brian C. O'Neill, Marco Janssen, Thomas A. M. Pugh, Sam S. Rabin, Mark Rounsevell, James P. Syvitski, Isaac Ullah, and Peter H. Verburg
Earth Syst. Dynam., 9, 895–914, https://doi.org/10.5194/esd-9-895-2018, https://doi.org/10.5194/esd-9-895-2018, 2018
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Understanding the complexity behind the rapid use of Earth’s resources requires modelling approaches that couple human and natural systems. We propose a framework that comprises the configuration, frequency of interaction, and coordination of communication between models along with eight lessons as guidelines to increase the success of coupled human–natural systems modelling initiatives. We also suggest a way to expedite model coupling and increase the longevity and interoperability of models.
Sam S. Rabin, Joe R. Melton, Gitta Lasslop, Dominique Bachelet, Matthew Forrest, Stijn Hantson, Jed O. Kaplan, Fang Li, Stéphane Mangeon, Daniel S. Ward, Chao Yue, Vivek K. Arora, Thomas Hickler, Silvia Kloster, Wolfgang Knorr, Lars Nieradzik, Allan Spessa, Gerd A. Folberth, Tim Sheehan, Apostolos Voulgarakis, Douglas I. Kelley, I. Colin Prentice, Stephen Sitch, Sandy Harrison, and Almut Arneth
Geosci. Model Dev., 10, 1175–1197, https://doi.org/10.5194/gmd-10-1175-2017, https://doi.org/10.5194/gmd-10-1175-2017, 2017
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Global vegetation models are important tools for understanding how the Earth system will change in the future, and fire is a critical process to include. A number of different methods have been developed to represent vegetation burning. This paper describes the protocol for the first systematic comparison of global fire models, which will allow the community to explore various drivers and evaluate what mechanisms are important for improving performance. It also includes equations for all models.
Stijn Hantson, Almut Arneth, Sandy P. Harrison, Douglas I. Kelley, I. Colin Prentice, Sam S. Rabin, Sally Archibald, Florent Mouillot, Steve R. Arnold, Paulo Artaxo, Dominique Bachelet, Philippe Ciais, Matthew Forrest, Pierre Friedlingstein, Thomas Hickler, Jed O. Kaplan, Silvia Kloster, Wolfgang Knorr, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Andrea Meyn, Stephen Sitch, Allan Spessa, Guido R. van der Werf, Apostolos Voulgarakis, and Chao Yue
Biogeosciences, 13, 3359–3375, https://doi.org/10.5194/bg-13-3359-2016, https://doi.org/10.5194/bg-13-3359-2016, 2016
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Our ability to predict the magnitude and geographic pattern of past and future fire impacts rests on our ability to model fire regimes. A large variety of models exist, and it is unclear which type of model or degree of complexity is required to model fire adequately at regional to global scales. In this paper we summarize the current state of the art in fire-regime modelling and model evaluation, and outline what lessons may be learned from the Fire Model Intercomparison Project – FireMIP.
S. S. Rabin, B. I. Magi, E. Shevliakova, and S. W. Pacala
Biogeosciences, 12, 6591–6604, https://doi.org/10.5194/bg-12-6591-2015, https://doi.org/10.5194/bg-12-6591-2015, 2015
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People worldwide use fire to manage agriculture, but often also suppress fire in the landscape surrounding their fields. Here, we estimate the net result of these effects of cropland and pasture on fire at a regional, monthly level. Pasture is shown, for the first time, to contribute strongly to global patterns of burning. Our results could be used to improve representations of burning in global vegetation and climate models, improving our understanding of how people affect the Earth system.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-66, https://doi.org/10.5194/gmd-2023-66, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Enrico Zorzetto, Sergey Malyshev, Nathaniel Chaney, David Paynter, Raymond Menzel, and Elena Shevliakova
Geosci. Model Dev., 16, 1937–1960, https://doi.org/10.5194/gmd-16-1937-2023, https://doi.org/10.5194/gmd-16-1937-2023, 2023
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In this paper we develop a methodology to model the spatial distribution of solar radiation received by land over mountainous terrain. The approach is designed to be used in Earth system models, where coarse grid cells hinder the description of fine-scale land–atmosphere interactions. We adopt a clustering algorithm to partition the land domain into a set of homogeneous sub-grid
tiles, and for each tile we evaluate solar radiation received by land based on terrain properties.
Zun Yin, Kirsten L. Findell, Paul Dirmeyer, Elena Shevliakova, Sergey Malyshev, Khaled Ghannam, Nina Raoult, and Zhihong Tan
Hydrol. Earth Syst. Sci., 27, 861–872, https://doi.org/10.5194/hess-27-861-2023, https://doi.org/10.5194/hess-27-861-2023, 2023
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Land–atmosphere (L–A) interactions typically focus on daytime processes connecting the land state with the overlying atmospheric boundary layer. However, much prior L–A work used monthly or daily means due to the lack of daytime-only data products. Here we show that monthly smoothing can significantly obscure the L–A coupling signal, and including nighttime information can mute or mask the daytime processes of interest. We propose diagnosing L–A coupling within models or archiving subdaily data.
Minjin Lee, Charles A. Stock, John P. Dunne, and Elena Shevliakova
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2022-236, https://doi.org/10.5194/gmd-2022-236, 2023
Revised manuscript under review for GMD
Short summary
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Modeling global freshwater solid and nutrient loads, in both magnitude and form, is imperative for understanding emerging eutrophication problems. Such efforts, however, have been challenged by the difficulty of balancing details of freshwater biogeochemical processes with limited knowledge, input and validation datasets. Here we develop a global freshwater model that resolves intertwined algae, solid, and nutrient dynamics and provide performance assessment against measurement-based estimates.
Ensheng Weng, Igor Aleinov, Ram Singh, Michael J. Puma, Sonali S. McDermid, Nancy Y. Kiang, Maxwell Kelley, Kevin Wilcox, Ray Dybzinski, Caroline E. Farrior, Stephen W. Pacala, and Benjamin I. Cook
Geosci. Model Dev., 15, 8153–8180, https://doi.org/10.5194/gmd-15-8153-2022, https://doi.org/10.5194/gmd-15-8153-2022, 2022
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We develop a demographic vegetation model to improve the representation of terrestrial vegetation dynamics and ecosystem biogeochemical cycles in the Goddard Institute for Space Studies ModelE. The individual-based competition for light and soil resources makes the modeling of eco-evolutionary optimality possible. This model will enable ModelE to simulate long-term biogeophysical and biogeochemical feedbacks between the climate system and land ecosystems at decadal to centurial temporal scales.
Jianyong Ma, Stefan Olin, Peter Anthoni, Sam S. Rabin, Anita D. Bayer, Sylvia S. Nyawira, and Almut Arneth
Geosci. Model Dev., 15, 815–839, https://doi.org/10.5194/gmd-15-815-2022, https://doi.org/10.5194/gmd-15-815-2022, 2022
Short summary
Short summary
The implementation of the biological N fixation process in LPJ-GUESS in this study provides an opportunity to quantify N fixation rates between legumes and to better estimate grain legume production on a global scale. It also helps to predict and detect the potential contribution of N-fixing plants as
green manureto reducing or removing the use of N fertilizer in global agricultural systems, considering different climate conditions, management practices, and land-use change scenarios.
Sian Kou-Giesbrecht, Sergey Malyshev, Isabel Martínez Cano, Stephen W. Pacala, Elena Shevliakova, Thomas A. Bytnerowicz, and Duncan N. L. Menge
Biogeosciences, 18, 4143–4183, https://doi.org/10.5194/bg-18-4143-2021, https://doi.org/10.5194/bg-18-4143-2021, 2021
Short summary
Short summary
Representing biological nitrogen fixation (BNF) is an important challenge for land models. We present a novel representation of BNF and updated nitrogen cycling in a land model. It includes a representation of asymbiotic BNF by soil microbes and the competitive dynamics between nitrogen-fixing and non-fixing plants. It improves estimations of major carbon and nitrogen pools and fluxes and their temporal dynamics in comparison to previous representations of BNF in land models.
Camelia-Eliza Telteu, Hannes Müller Schmied, Wim Thiery, Guoyong Leng, Peter Burek, Xingcai Liu, Julien Eric Stanislas Boulange, Lauren Seaby Andersen, Manolis Grillakis, Simon Newland Gosling, Yusuke Satoh, Oldrich Rakovec, Tobias Stacke, Jinfeng Chang, Niko Wanders, Harsh Lovekumar Shah, Tim Trautmann, Ganquan Mao, Naota Hanasaki, Aristeidis Koutroulis, Yadu Pokhrel, Luis Samaniego, Yoshihide Wada, Vimal Mishra, Junguo Liu, Petra Döll, Fang Zhao, Anne Gädeke, Sam S. Rabin, and Florian Herz
Geosci. Model Dev., 14, 3843–3878, https://doi.org/10.5194/gmd-14-3843-2021, https://doi.org/10.5194/gmd-14-3843-2021, 2021
Short summary
Short summary
We analyse water storage compartments, water flows, and human water use sectors included in 16 global water models that provide simulations for the Inter-Sectoral Impact Model Intercomparison Project phase 2b. We develop a standard writing style for the model equations. We conclude that even though hydrologic processes are often based on similar equations, in the end these equations have been adjusted, or the models have used different values for specific parameters or specific variables.
George C. Hurtt, Louise Chini, Ritvik Sahajpal, Steve Frolking, Benjamin L. Bodirsky, Katherine Calvin, Jonathan C. Doelman, Justin Fisk, Shinichiro Fujimori, Kees Klein Goldewijk, Tomoko Hasegawa, Peter Havlik, Andreas Heinimann, Florian Humpenöder, Johan Jungclaus, Jed O. Kaplan, Jennifer Kennedy, Tamás Krisztin, David Lawrence, Peter Lawrence, Lei Ma, Ole Mertz, Julia Pongratz, Alexander Popp, Benjamin Poulter, Keywan Riahi, Elena Shevliakova, Elke Stehfest, Peter Thornton, Francesco N. Tubiello, Detlef P. van Vuuren, and Xin Zhang
Geosci. Model Dev., 13, 5425–5464, https://doi.org/10.5194/gmd-13-5425-2020, https://doi.org/10.5194/gmd-13-5425-2020, 2020
Short summary
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To estimate the effects of human land use activities on the carbon–climate system, a new set of global gridded land use forcing datasets was developed to link historical land use data to eight future scenarios in a standard format required by climate models. This new generation of land use harmonization (LUH2) includes updated inputs, higher spatial resolution, more detailed land use transitions, and the addition of important agricultural management layers; it will be used for CMIP6 simulations.
Stijn Hantson, Douglas I. Kelley, Almut Arneth, Sandy P. Harrison, Sally Archibald, Dominique Bachelet, Matthew Forrest, Thomas Hickler, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Lars Nieradzik, Sam S. Rabin, I. Colin Prentice, Tim Sheehan, Stephen Sitch, Lina Teckentrup, Apostolos Voulgarakis, and Chao Yue
Geosci. Model Dev., 13, 3299–3318, https://doi.org/10.5194/gmd-13-3299-2020, https://doi.org/10.5194/gmd-13-3299-2020, 2020
Short summary
Short summary
Global fire–vegetation models are widely used, but there has been limited evaluation of how well they represent various aspects of fire regimes. Here we perform a systematic evaluation of simulations made by nine FireMIP models in order to quantify their ability to reproduce a range of fire and vegetation benchmarks. While some FireMIP models are better at representing certain aspects of the fire regime, no model clearly outperforms all other models across the full range of variables assessed.
Sam S. Rabin, Peter Alexander, Roslyn Henry, Peter Anthoni, Thomas A. M. Pugh, Mark Rounsevell, and Almut Arneth
Earth Syst. Dynam., 11, 357–376, https://doi.org/10.5194/esd-11-357-2020, https://doi.org/10.5194/esd-11-357-2020, 2020
Short summary
Short summary
We modeled how agricultural performance and demand will shift as a result of climate change and population growth, and how the resulting adaptations will affect aspects of the Earth system upon which humanity depends. We found that the impacts of land use and management can have stronger impacts than climate change on some such
ecosystem services. The overall impacts are strongest in future scenarios with more severe climate change, high population growth, and/or resource-intensive lifestyles.
Bing Pu, Paul Ginoux, Huan Guo, N. Christina Hsu, John Kimball, Beatrice Marticorena, Sergey Malyshev, Vaishali Naik, Norman T. O'Neill, Carlos Pérez García-Pando, Juliette Paireau, Joseph M. Prospero, Elena Shevliakova, and Ming Zhao
Atmos. Chem. Phys., 20, 55–81, https://doi.org/10.5194/acp-20-55-2020, https://doi.org/10.5194/acp-20-55-2020, 2020
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Dust emission initiates when surface wind velocities exceed a threshold depending on soil and surface characteristics and varying spatially and temporally. Climate models widely use wind erosion thresholds. The climatological monthly global distribution of the wind erosion threshold, Vthreshold, is retrieved using satellite and reanalysis products and improves the simulation of dust frequency, magnitude, and the seasonal cycle in the Geophysical Fluid Dynamics Laboratory land–atmosphere model.
Ensheng Weng, Ray Dybzinski, Caroline E. Farrior, and Stephen W. Pacala
Biogeosciences, 16, 4577–4599, https://doi.org/10.5194/bg-16-4577-2019, https://doi.org/10.5194/bg-16-4577-2019, 2019
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Our study illustrates that the competition processes for light and soil resources in a game-theoretic vegetation demographic model can substantially change the prediction of the contribution of ecosystems to the global carbon cycle. The model that tracks the competitive allocation strategies can generate significantly different ecosystem-level predictions than those with fixed allocation strategies.
Fang Li, Maria Val Martin, Meinrat O. Andreae, Almut Arneth, Stijn Hantson, Johannes W. Kaiser, Gitta Lasslop, Chao Yue, Dominique Bachelet, Matthew Forrest, Erik Kluzek, Xiaohong Liu, Stephane Mangeon, Joe R. Melton, Daniel S. Ward, Anton Darmenov, Thomas Hickler, Charles Ichoku, Brian I. Magi, Stephen Sitch, Guido R. van der Werf, Christine Wiedinmyer, and Sam S. Rabin
Atmos. Chem. Phys., 19, 12545–12567, https://doi.org/10.5194/acp-19-12545-2019, https://doi.org/10.5194/acp-19-12545-2019, 2019
Short summary
Short summary
Fire emissions are critical for atmospheric composition, climate, carbon cycle, and air quality. We provide the first global multi-model fire emission reconstructions for 1700–2012, including carbon and 33 species of trace gases and aerosols, based on the nine state-of-the-art global fire models that participated in FireMIP. We also provide information on the recent status and limitations of the model-based reconstructions and identify the main uncertainty sources in their long-term changes.
Isabel Martínez Cano, Helene C. Muller-Landau, S. Joseph Wright, Stephanie A. Bohlman, and Stephen W. Pacala
Biogeosciences, 16, 847–862, https://doi.org/10.5194/bg-16-847-2019, https://doi.org/10.5194/bg-16-847-2019, 2019
Fabien Paulot, Sergey Malyshev, Tran Nguyen, John D. Crounse, Elena Shevliakova, and Larry W. Horowitz
Atmos. Chem. Phys., 18, 17963–17978, https://doi.org/10.5194/acp-18-17963-2018, https://doi.org/10.5194/acp-18-17963-2018, 2018
Derek T. Robinson, Alan Di Vittorio, Peter Alexander, Almut Arneth, C. Michael Barton, Daniel G. Brown, Albert Kettner, Carsten Lemmen, Brian C. O'Neill, Marco Janssen, Thomas A. M. Pugh, Sam S. Rabin, Mark Rounsevell, James P. Syvitski, Isaac Ullah, and Peter H. Verburg
Earth Syst. Dynam., 9, 895–914, https://doi.org/10.5194/esd-9-895-2018, https://doi.org/10.5194/esd-9-895-2018, 2018
Short summary
Short summary
Understanding the complexity behind the rapid use of Earth’s resources requires modelling approaches that couple human and natural systems. We propose a framework that comprises the configuration, frequency of interaction, and coordination of communication between models along with eight lessons as guidelines to increase the success of coupled human–natural systems modelling initiatives. We also suggest a way to expedite model coupling and increase the longevity and interoperability of models.
Nathaniel W. Chaney, Marjolein H. J. Van Huijgevoort, Elena Shevliakova, Sergey Malyshev, Paul C. D. Milly, Paul P. G. Gauthier, and Benjamin N. Sulman
Hydrol. Earth Syst. Sci., 22, 3311–3330, https://doi.org/10.5194/hess-22-3311-2018, https://doi.org/10.5194/hess-22-3311-2018, 2018
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The petabytes of existing global environmental data provide an invaluable asset to improve the characterization of land heterogeneity in Earth system models. This study introduces a clustering algorithm that summarizes a domain's heterogeneity through spatially interconnected clusters. A series of land model simulations in central California using this approach illustrate the critical role that multi-scale heterogeneity can have on the macroscale water, energy, and carbon cycles.
Margreet J. E. van Marle, Silvia Kloster, Brian I. Magi, Jennifer R. Marlon, Anne-Laure Daniau, Robert D. Field, Almut Arneth, Matthew Forrest, Stijn Hantson, Natalie M. Kehrwald, Wolfgang Knorr, Gitta Lasslop, Fang Li, Stéphane Mangeon, Chao Yue, Johannes W. Kaiser, and Guido R. van der Werf
Geosci. Model Dev., 10, 3329–3357, https://doi.org/10.5194/gmd-10-3329-2017, https://doi.org/10.5194/gmd-10-3329-2017, 2017
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Fire emission estimates are a key input dataset for climate models. We have merged satellite information with proxy datasets and fire models to reconstruct fire emissions since 1750 AD. Our dataset indicates that, on a global scale, fire emissions were relatively constant over time. Since roughly 1950, declining emissions from savannas were approximately balanced by increased emissions from tropical deforestation zones.
Sam S. Rabin, Joe R. Melton, Gitta Lasslop, Dominique Bachelet, Matthew Forrest, Stijn Hantson, Jed O. Kaplan, Fang Li, Stéphane Mangeon, Daniel S. Ward, Chao Yue, Vivek K. Arora, Thomas Hickler, Silvia Kloster, Wolfgang Knorr, Lars Nieradzik, Allan Spessa, Gerd A. Folberth, Tim Sheehan, Apostolos Voulgarakis, Douglas I. Kelley, I. Colin Prentice, Stephen Sitch, Sandy Harrison, and Almut Arneth
Geosci. Model Dev., 10, 1175–1197, https://doi.org/10.5194/gmd-10-1175-2017, https://doi.org/10.5194/gmd-10-1175-2017, 2017
Short summary
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Global vegetation models are important tools for understanding how the Earth system will change in the future, and fire is a critical process to include. A number of different methods have been developed to represent vegetation burning. This paper describes the protocol for the first systematic comparison of global fire models, which will allow the community to explore various drivers and evaluate what mechanisms are important for improving performance. It also includes equations for all models.
David M. Lawrence, George C. Hurtt, Almut Arneth, Victor Brovkin, Kate V. Calvin, Andrew D. Jones, Chris D. Jones, Peter J. Lawrence, Nathalie de Noblet-Ducoudré, Julia Pongratz, Sonia I. Seneviratne, and Elena Shevliakova
Geosci. Model Dev., 9, 2973–2998, https://doi.org/10.5194/gmd-9-2973-2016, https://doi.org/10.5194/gmd-9-2973-2016, 2016
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Human land-use activities have resulted in large changes to the Earth's surface, with resulting implications for climate. In the future, land-use activities are likely to expand and intensify further to meet growing demands for food, fiber, and energy. The goal of LUMIP is to take the next steps in land-use change science, and enable, coordinate, and ultimately address the most important land-use science questions in more depth and sophistication than possible in a multi-model context to date.
Stijn Hantson, Almut Arneth, Sandy P. Harrison, Douglas I. Kelley, I. Colin Prentice, Sam S. Rabin, Sally Archibald, Florent Mouillot, Steve R. Arnold, Paulo Artaxo, Dominique Bachelet, Philippe Ciais, Matthew Forrest, Pierre Friedlingstein, Thomas Hickler, Jed O. Kaplan, Silvia Kloster, Wolfgang Knorr, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Andrea Meyn, Stephen Sitch, Allan Spessa, Guido R. van der Werf, Apostolos Voulgarakis, and Chao Yue
Biogeosciences, 13, 3359–3375, https://doi.org/10.5194/bg-13-3359-2016, https://doi.org/10.5194/bg-13-3359-2016, 2016
Short summary
Short summary
Our ability to predict the magnitude and geographic pattern of past and future fire impacts rests on our ability to model fire regimes. A large variety of models exist, and it is unclear which type of model or degree of complexity is required to model fire adequately at regional to global scales. In this paper we summarize the current state of the art in fire-regime modelling and model evaluation, and outline what lessons may be learned from the Fire Model Intercomparison Project – FireMIP.
Jennifer R. Marlon, Ryan Kelly, Anne-Laure Daniau, Boris Vannière, Mitchell J. Power, Patrick Bartlein, Philip Higuera, Olivier Blarquez, Simon Brewer, Tim Brücher, Angelica Feurdean, Graciela Gil Romera, Virginia Iglesias, S. Yoshi Maezumi, Brian Magi, Colin J. Courtney Mustaphi, and Tonishtan Zhihai
Biogeosciences, 13, 3225–3244, https://doi.org/10.5194/bg-13-3225-2016, https://doi.org/10.5194/bg-13-3225-2016, 2016
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We reconstruct spatiotemporal variations in biomass burning since the Last Glacial Maximum (LGM) using the Global Charcoal Database version 3 (including 736 records) and a method to grid the data. LGM to late Holocene burning broadly tracks global and regional climate changes over that interval. Human activities increase fire in the 1800s and then reduce it for most of the 20th century. Burning is now rapidly increasing, particularly in western North America and southeastern Australia.
S. S. Rabin, B. I. Magi, E. Shevliakova, and S. W. Pacala
Biogeosciences, 12, 6591–6604, https://doi.org/10.5194/bg-12-6591-2015, https://doi.org/10.5194/bg-12-6591-2015, 2015
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People worldwide use fire to manage agriculture, but often also suppress fire in the landscape surrounding their fields. Here, we estimate the net result of these effects of cropland and pasture on fire at a regional, monthly level. Pasture is shown, for the first time, to contribute strongly to global patterns of burning. Our results could be used to improve representations of burning in global vegetation and climate models, improving our understanding of how people affect the Earth system.
E. S. Weng, S. Malyshev, J. W. Lichstein, C. E. Farrior, R. Dybzinski, T. Zhang, E. Shevliakova, and S. W. Pacala
Biogeosciences, 12, 2655–2694, https://doi.org/10.5194/bg-12-2655-2015, https://doi.org/10.5194/bg-12-2655-2015, 2015
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We present a model, LM3-PPA, which simulates vegetation dynamics and biogeochemical processes by explicitly scaling from individual plants to ecosystems using the perfect plasticity approximation. It includes height-structured competition for light- and root-allocation-dependent competition for belowground resources. Because of the tractability of the PPA, the coupled LM3-PPA model is able to retain computational tractability, as well as close linkages to mathematically tractable special cases.
M. Lee, S. Malyshev, E. Shevliakova, P. C. D. Milly, and P. R. Jaffé
Biogeosciences, 11, 5809–5826, https://doi.org/10.5194/bg-11-5809-2014, https://doi.org/10.5194/bg-11-5809-2014, 2014
Z. M. Subin, P. C. D. Milly, B. N. Sulman, S. Malyshev, and E. Shevliakova
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-11-8443-2014, https://doi.org/10.5194/hessd-11-8443-2014, 2014
Preprint withdrawn
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We provide a framework for including the effects of fine-scale hydrology on biogeochemistry in Earth-system models (ESMs). We simulate a representative hillslope in each ESM grid cell. While including the hillslope does not change the average hydrology, it causes greater vegetation and soil carbon to accumulate in lowlands. This is important for understanding how soil carbon might be affected by climate change, particularly in wetlands.
K. E. O. Todd-Brown, J. T. Randerson, F. Hopkins, V. Arora, T. Hajima, C. Jones, E. Shevliakova, J. Tjiputra, E. Volodin, T. Wu, Q. Zhang, and S. D. Allison
Biogeosciences, 11, 2341–2356, https://doi.org/10.5194/bg-11-2341-2014, https://doi.org/10.5194/bg-11-2341-2014, 2014
Related subject area
Biogeosciences
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO, and NH3 emissions from enhanced rock weathering with croplands
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
The community-centered aquatic biogeochemistry model unified RIVE v1.0: a unified version for water column
Modeling of non-structural carbohydrate dynamics by the spatially explicit individual-based dynamic global vegetation model SEIB-DGVM (SEIB-DGVM-NSC version 1.0)
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
MEDFATE 2.9.3: a trait-enabled model to simulate Mediterranean forest function and dynamics at regional scales
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water and nitrogen perturbations
Modelling the role of livestock grazing in C and N cycling in grasslands with LPJmL5.0-grazing
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
Implementation of trait-based ozone plant sensitivity in the Yale Interactive terrestrial Biosphere model v1.0 to assess global vegetation damage
The Permafrost and Organic LayEr module for Forest Models (POLE-FM) 1.0
CompLaB v1.0: a scalable pore-scale model for flow, biogeochemistry, microbial metabolism, and biofilm dynamics
Validation of a new spatially explicit process-based model (HETEROFOR) to simulate structurally and compositionally complex forest stands in eastern North America
A Novel Eulerian Reaction-Transport Model to Simulate Age and Reactivity Continua Interacting with Mixing Processes
AgriCarbon-EO: v1.0.1: Large Scale and High Resolution Simulation of Carbon Fluxes by Assimilation of Sentinel-2 and Landsat-8 Reflectances using a Bayesian approach
Global agricultural ammonia emissions simulated with the ORCHIDEE land surface model
ForamEcoGEnIE 2.0: incorporating symbiosis and spine traits into a trait-based global planktic foraminiferal model
FABM-NflexPD 2.0: testing an instantaneous acclimation approach for modeling the implications of phytoplankton eco-physiology for the carbon and nutrient cycles
Evaluating the vegetation–atmosphere coupling strength of ORCHIDEE land surface model (v7266)
Non-Redfieldian carbon model for the Baltic Sea (ERGOM version 1.2) – implementation and budget estimates
Implementation of a new crop phenology and irrigation scheme in the ISBA land surface model using SURFEX_v8.1
Simulating long-term responses of soil organic matter turnover to substrate stoichiometry by abstracting fast and small-scale microbial processes: the Soil Enzyme Steady Allocation Model (SESAM; v3.0)
Modeling demographic-driven vegetation dynamics and ecosystem biogeochemical cycling in NASA GISS's Earth system model (ModelE-BiomeE v.1.0)
Forest fluxes and mortality response to drought: model description (ORCHIDEE-CAN-NHA r7236) and evaluation at the Caxiuanã drought experiment
Matrix representation of lateral soil movements: scaling and calibrating CE-DYNAM (v2) at a continental level
CANOPS-GRB v1.0: a new Earth system model for simulating the evolution of ocean–atmosphere chemistry over geologic timescales
Low sensitivity of three terrestrial biosphere models to soil texture over the South American tropics
FESDIA (v1.0): exploring temporal variations of sediment biogeochemistry under the influence of flood events using numerical modelling
Impact of changes in climate and CO2 on the carbon storage potential of vegetation under limited water availability using SEIB-DGVM version 3.02
FORCCHN V2.0: an individual-based model for predicting multiscale forest carbon dynamics
Climate and parameter sensitivity and induced uncertainties in carbon stock projections for European forests (using LPJ-GUESS 4.0)
Use of genetic algorithms for ocean model parameter optimisation: a case study using PISCES-v2_RC for North Atlantic particulate organic carbon
SurEau-Ecos v2.0: a trait-based plant hydraulics model for simulations of plant water status and drought-induced mortality at the ecosystem level
Improved representation of plant physiology in the JULES-vn5.6 land surface model: photosynthesis, stomatal conductance and thermal acclimation
Representation of the phosphorus cycle in the Joint UK Land Environment Simulator (vn5.5_JULES-CNP)
CLM5-FruitTree: a new sub-model for deciduous fruit trees in the Community Land Model (CLM5)
The impact of hurricane disturbances on a tropical forest: implementing a palm plant functional type and hurricane disturbance module in ED2-HuDi V1.0
A validation standard for area of habitat maps for terrestrial birds and mammals
Soil Cycles of Elements simulator for Predicting TERrestrial regulation of greenhouse gases: SCEPTER v0.9
Using terrestrial laser scanning to constrain forest ecosystem structure and functions in the Ecosystem Demography model (ED2.2)
A map of global peatland extent created using machine learning (Peat-ML)
Implementation and evaluation of the unified stomatal optimization approach in the Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
ECOSMO II(CHL): a marine biogeochemical model for the North Atlantic and the Arctic
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
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The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
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We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
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Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
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We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
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Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
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In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
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Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
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This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
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Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-135, https://doi.org/10.5194/gmd-2023-135, 2023
Revised manuscript accepted for GMD
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This paper presents unified RIVE v1.0, a unified version of aquatic biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganisms’ activities to describe full biogeochemical cycles in the water column (e.g. carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams, and public services.
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
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Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-107, https://doi.org/10.5194/gmd-2023-107, 2023
Revised manuscript accepted for GMD
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
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Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-74, https://doi.org/10.5194/gmd-2023-74, 2023
Revised manuscript accepted for GMD
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We develop a machine learning based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a lightweight way.
Jens Heinke, Susanne Rolinski, and Christoph Müller
Geosci. Model Dev., 16, 2455–2475, https://doi.org/10.5194/gmd-16-2455-2023, https://doi.org/10.5194/gmd-16-2455-2023, 2023
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We develop a livestock module for the global vegetation model LPJmL5.0 to simulate the impact of grazing dairy cattle on carbon and nitrogen cycles in grasslands. A novelty of the approach is that it accounts for the effect of feed quality on feed uptake and feed utilization by animals. The portioning of dietary nitrogen into milk, feces, and urine shows very good agreement with estimates obtained from animal trials.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-66, https://doi.org/10.5194/gmd-2023-66, 2023
Revised manuscript accepted for GMD
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina M. Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander W. Cheesman, Yansen Xu, and Maria Carolina Duran Rojas
Geosci. Model Dev., 16, 2261–2276, https://doi.org/10.5194/gmd-16-2261-2023, https://doi.org/10.5194/gmd-16-2261-2023, 2023
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Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained nor fully implemented in large-scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP, with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Winslow D. Hansen, Adrianna Foster, Benjamin Gaglioti, Rupert Seidl, and Werner Rammer
Geosci. Model Dev., 16, 2011–2036, https://doi.org/10.5194/gmd-16-2011-2023, https://doi.org/10.5194/gmd-16-2011-2023, 2023
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Permafrost and the thick soil-surface organic layers that insulate permafrost are important controls of boreal forest dynamics and carbon cycling. However, both are rarely included in process-based vegetation models used to simulate future ecosystem trajectories. To address this challenge, we developed a computationally efficient permafrost and soil organic layer module that operates at fine spatial (1 ha) and temporal (daily) resolutions.
Heewon Jung, Hyun-Seob Song, and Christof Meile
Geosci. Model Dev., 16, 1683–1696, https://doi.org/10.5194/gmd-16-1683-2023, https://doi.org/10.5194/gmd-16-1683-2023, 2023
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Microbial activity responsible for many chemical transformations depends on environmental conditions. These can vary locally, e.g., between poorly connected pores in porous media. We present a modeling framework that resolves such small spatial scales explicitly, accounts for feedback between transport and biogeochemical conditions, and can integrate state-of-the-art representations of microbes in a computationally efficient way, making it broadly applicable in science and engineering use cases.
Arthur Guignabert, Quentin Ponette, Frédéric André, Christian Messier, Philippe Nolet, and Mathieu Jonard
Geosci. Model Dev., 16, 1661–1682, https://doi.org/10.5194/gmd-16-1661-2023, https://doi.org/10.5194/gmd-16-1661-2023, 2023
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Spatially explicit and process-based models are useful to test innovative forestry practices under changing and uncertain conditions. However, their larger use is often limited by the restricted range of species and stand structures they can reliably account for. We therefore calibrated and evaluated such a model, HETEROFOR, for 23 species across southern Québec. Our results showed that the model is robust and can predict accurately both individual tree growth and stand dynamics in this region.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
EGUsphere, https://doi.org/10.5194/egusphere-2023-46, https://doi.org/10.5194/egusphere-2023-46, 2023
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Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, bottom trawling, etc. We derive equations for simulating the effect of mixing on central moments that describe the distributions. Then, we demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Rémy Fieuzal, and Eric Ceschia
EGUsphere, https://doi.org/10.5194/egusphere-2023-48, https://doi.org/10.5194/egusphere-2023-48, 2023
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Quantification of Carbon fluxes of crops is an essential brick for the construction of a Monitoring, Reporting and Verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates through an efficient Bayesian approach, high resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in-situ flux towers, yield maps, and analysed at regional scale.
Maureen Beaudor, Nicolas Vuichard, Juliette Lathière, Nikolaos Evangeliou, Martin Van Damme, Lieven Clarisse, and Didier Hauglustaine
Geosci. Model Dev., 16, 1053–1081, https://doi.org/10.5194/gmd-16-1053-2023, https://doi.org/10.5194/gmd-16-1053-2023, 2023
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Ammonia mainly comes from the agricultural sector, and its volatilization relies on environmental variables. Our approach aims at benefiting from an Earth system model framework to estimate it. By doing so, we represent a consistent spatial distribution of the emissions' response to environmental changes.
We greatly improved the seasonal cycle of emissions compared with previous work. In addition, our model includes natural soil emissions (that are rarely represented in modeling approaches).
Rui Ying, Fanny M. Monteiro, Jamie D. Wilson, and Daniela N. Schmidt
Geosci. Model Dev., 16, 813–832, https://doi.org/10.5194/gmd-16-813-2023, https://doi.org/10.5194/gmd-16-813-2023, 2023
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Planktic foraminifera are marine-calcifying zooplankton; their shells are widely used to measure past temperature and productivity. We developed ForamEcoGEnIE 2.0 to simulate the four subgroups of this organism. We found that the relative abundance distribution agrees with marine sediment core-top data and that carbon export and biomass are close to sediment trap and plankton net observations respectively. This model provides the opportunity to study foraminiferal ecology in any geological era.
Onur Kerimoglu, Markus Pahlow, Prima Anugerahanti, and Sherwood Lan Smith
Geosci. Model Dev., 16, 95–108, https://doi.org/10.5194/gmd-16-95-2023, https://doi.org/10.5194/gmd-16-95-2023, 2023
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In classical models that track the changes in the elemental composition of phytoplankton, additional state variables are required for each element resolved. In this study, we show how the behavior of such an explicit model can be approximated using an
instantaneous acclimationapproach, in which the elemental composition of the phytoplankton is assumed to adjust to an optimal value instantaneously. Through rigorous tests, we evaluate the consistency of this scheme.
Yuan Zhang, Devaraju Narayanappa, Philippe Ciais, Wei Li, Daniel Goll, Nicolas Vuichard, Martin G. De Kauwe, Laurent Li, and Fabienne Maignan
Geosci. Model Dev., 15, 9111–9125, https://doi.org/10.5194/gmd-15-9111-2022, https://doi.org/10.5194/gmd-15-9111-2022, 2022
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There are a few studies to examine if current models correctly represented the complex processes of transpiration. Here, we use a coefficient Ω, which indicates if transpiration is mainly controlled by vegetation processes or by turbulence, to evaluate the ORCHIDEE model. We found a good performance of ORCHIDEE, but due to compensation of biases in different processes, we also identified how different factors control Ω and where the model is wrong. Our method is generic to evaluate other models.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
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Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Arsène Druel, Simon Munier, Anthony Mucia, Clément Albergel, and Jean-Christophe Calvet
Geosci. Model Dev., 15, 8453–8471, https://doi.org/10.5194/gmd-15-8453-2022, https://doi.org/10.5194/gmd-15-8453-2022, 2022
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Crop phenology and irrigation is implemented into a land surface model able to work at a global scale. A case study is presented over Nebraska (USA). Simulations with and without the new scheme are compared to different satellite-based observations. The model is able to produce a realistic yearly irrigation water amount. The irrigation scheme improves the simulated leaf area index, gross primary productivity, evapotransipiration, and land surface temperature.
Thomas Wutzler, Lin Yu, Marion Schrumpf, and Sönke Zaehle
Geosci. Model Dev., 15, 8377–8393, https://doi.org/10.5194/gmd-15-8377-2022, https://doi.org/10.5194/gmd-15-8377-2022, 2022
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Soil microbes process soil organic matter and affect carbon storage and plant nutrition at the ecosystem scale. We hypothesized that decadal dynamics is constrained by the ratios of elements in litter inputs, microbes, and matter and that microbial community optimizes growth. This allowed the SESAM model to descibe decadal-term carbon sequestration in soils and other biogeochemical processes explicitly accounting for microbial processes but without its problematic fine-scale parameterization.
Ensheng Weng, Igor Aleinov, Ram Singh, Michael J. Puma, Sonali S. McDermid, Nancy Y. Kiang, Maxwell Kelley, Kevin Wilcox, Ray Dybzinski, Caroline E. Farrior, Stephen W. Pacala, and Benjamin I. Cook
Geosci. Model Dev., 15, 8153–8180, https://doi.org/10.5194/gmd-15-8153-2022, https://doi.org/10.5194/gmd-15-8153-2022, 2022
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We develop a demographic vegetation model to improve the representation of terrestrial vegetation dynamics and ecosystem biogeochemical cycles in the Goddard Institute for Space Studies ModelE. The individual-based competition for light and soil resources makes the modeling of eco-evolutionary optimality possible. This model will enable ModelE to simulate long-term biogeophysical and biogeochemical feedbacks between the climate system and land ecosystems at decadal to centurial temporal scales.
Yitong Yao, Emilie Joetzjer, Philippe Ciais, Nicolas Viovy, Fabio Cresto Aleina, Jerome Chave, Lawren Sack, Megan Bartlett, Patrick Meir, Rosie Fisher, and Sebastiaan Luyssaert
Geosci. Model Dev., 15, 7809–7833, https://doi.org/10.5194/gmd-15-7809-2022, https://doi.org/10.5194/gmd-15-7809-2022, 2022
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To facilitate more mechanistic modeling of drought effects on forest dynamics, our study implements a hydraulic module to simulate the vertical water flow, change in water storage and percentage loss of stem conductance (PLC). With the relationship between PLC and tree mortality, our model can successfully reproduce the large biomass drop observed under throughfall exclusion. Our hydraulic module provides promising avenues benefiting the prediction for mortality under future drought events.
Arthur Nicolaus Fendrich, Philippe Ciais, Emanuele Lugato, Marco Carozzi, Bertrand Guenet, Pasquale Borrelli, Victoria Naipal, Matthew McGrath, Philippe Martin, and Panos Panagos
Geosci. Model Dev., 15, 7835–7857, https://doi.org/10.5194/gmd-15-7835-2022, https://doi.org/10.5194/gmd-15-7835-2022, 2022
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Currently, spatially explicit models for soil carbon stock can simulate the impacts of several changes. However, they do not incorporate the erosion, lateral transport, and deposition (ETD) of soil material. The present work developed ETD formulation, illustrated model calibration and validation for Europe, and presented the results for a depositional site. We expect that our work advances ETD models' description and facilitates their reproduction and incorporation in land surface models.
Kazumi Ozaki, Devon B. Cole, Christopher T. Reinhard, and Eiichi Tajika
Geosci. Model Dev., 15, 7593–7639, https://doi.org/10.5194/gmd-15-7593-2022, https://doi.org/10.5194/gmd-15-7593-2022, 2022
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A new biogeochemical model (CANOPS-GRB v1.0) for assessing the redox stability and dynamics of the ocean–atmosphere system on geologic timescales has been developed. In this paper, we present a full description of the model and its performance. CANOPS-GRB is a useful tool for understanding the factors regulating atmospheric O2 level and has the potential to greatly refine our current understanding of Earth's oxygenation history.
Félicien Meunier, Wim Verbruggen, Hans Verbeeck, and Marc Peaucelle
Geosci. Model Dev., 15, 7573–7591, https://doi.org/10.5194/gmd-15-7573-2022, https://doi.org/10.5194/gmd-15-7573-2022, 2022
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Drought stress occurs in plants when water supply (i.e. root water uptake) is lower than the water demand (i.e. atmospheric demand). It is strongly related to soil properties and expected to increase in intensity and frequency in the tropics due to climate change. In this study, we show that contrary to the expectations, state-of-the-art terrestrial biosphere models are mostly insensitive to soil texture and hence probably inadequate to reproduce in silico the plant water status in drying soils.
Stanley I. Nmor, Eric Viollier, Lucie Pastor, Bruno Lansard, Christophe Rabouille, and Karline Soetaert
Geosci. Model Dev., 15, 7325–7351, https://doi.org/10.5194/gmd-15-7325-2022, https://doi.org/10.5194/gmd-15-7325-2022, 2022
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The coastal marine environment serves as a transition zone in the land–ocean continuum and is susceptible to episodic phenomena such as flash floods, which cause massive organic matter deposition. Here, we present a model of sediment early diagenesis that explicitly describes this type of deposition while also incorporating unique flood deposit characteristics. This model can be used to investigate the temporal evolution of marine sediments following abrupt changes in environmental conditions.
Shanlin Tong, Weiguang Wang, Jie Chen, Chong-Yu Xu, Hisashi Sato, and Guoqing Wang
Geosci. Model Dev., 15, 7075–7098, https://doi.org/10.5194/gmd-15-7075-2022, https://doi.org/10.5194/gmd-15-7075-2022, 2022
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Plant carbon storage potential is central to moderate atmospheric CO2 concentration buildup and mitigation of climate change. There is an ongoing debate about the main driver of carbon storage. To reconcile this discrepancy, we use SEIB-DGVM to investigate the trend and response mechanism of carbon stock fractions among water limitation regions. Results show that the impact of CO2 and temperature on carbon stock depends on water limitation, offering a new perspective on carbon–water coupling.
Jing Fang, Herman H. Shugart, Feng Liu, Xiaodong Yan, Yunkun Song, and Fucheng Lv
Geosci. Model Dev., 15, 6863–6872, https://doi.org/10.5194/gmd-15-6863-2022, https://doi.org/10.5194/gmd-15-6863-2022, 2022
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Our study provided a detailed description and a package of an individual tree-based carbon model, FORCCHN2. This model used non-structural carbohydrate (NSC) pools to couple tree growth and phenology. The model could reproduce daily carbon fluxes across Northern Hemisphere forests. Given the potential importance of the application of this model, there is substantial scope for using FORCCHN2 in fields as diverse as forest ecology, climate change, and carbon estimation.
Johannes Oberpriller, Christine Herschlein, Peter Anthoni, Almut Arneth, Andreas Krause, Anja Rammig, Mats Lindeskog, Stefan Olin, and Florian Hartig
Geosci. Model Dev., 15, 6495–6519, https://doi.org/10.5194/gmd-15-6495-2022, https://doi.org/10.5194/gmd-15-6495-2022, 2022
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Understanding uncertainties of projected ecosystem dynamics under environmental change is of immense value for research and climate change policy. Here, we analyzed these across European forests. We find that uncertainties are dominantly induced by parameters related to water, mortality, and climate, with an increasing importance of climate from north to south. These results highlight that climate not only contributes uncertainty but also modifies uncertainties in other ecosystem processes.
Marcus Falls, Raffaele Bernardello, Miguel Castrillo, Mario Acosta, Joan Llort, and Martí Galí
Geosci. Model Dev., 15, 5713–5737, https://doi.org/10.5194/gmd-15-5713-2022, https://doi.org/10.5194/gmd-15-5713-2022, 2022
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This paper describes and tests a method which uses a genetic algorithm (GA), a type of optimisation algorithm, on an ocean biogeochemical model. The aim is to produce a set of numerical parameters that best reflect the observed data of particulate organic carbon in a specific region of the ocean. We show that the GA can provide optimised model parameters in a robust and efficient manner and can also help detect model limitations, ultimately leading to a reduction in the model uncertainties.
Julien Ruffault, François Pimont, Hervé Cochard, Jean-Luc Dupuy, and Nicolas Martin-StPaul
Geosci. Model Dev., 15, 5593–5626, https://doi.org/10.5194/gmd-15-5593-2022, https://doi.org/10.5194/gmd-15-5593-2022, 2022
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A widespread increase in tree mortality has been observed around the globe, and this trend is likely to continue because of ongoing climate change. Here we present SurEau-Ecos, a trait-based plant hydraulic model to predict tree desiccation and mortality. SurEau-Ecos can help determine the areas and ecosystems that are most vulnerable to drying conditions.
Rebecca J. Oliver, Lina M. Mercado, Doug B. Clark, Chris Huntingford, Christopher M. Taylor, Pier Luigi Vidale, Patrick C. McGuire, Markus Todt, Sonja Folwell, Valiyaveetil Shamsudheen Semeena, and Belinda E. Medlyn
Geosci. Model Dev., 15, 5567–5592, https://doi.org/10.5194/gmd-15-5567-2022, https://doi.org/10.5194/gmd-15-5567-2022, 2022
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We introduce new representations of plant physiological processes into a land surface model. Including new biological understanding improves modelled carbon and water fluxes for the present in tropical and northern-latitude forests. Future climate simulations demonstrate the sensitivity of photosynthesis to temperature is important for modelling carbon cycle dynamics in a warming world. Accurate representation of these processes in models is necessary for robust predictions of climate change.
Mahdi André Nakhavali, Lina M. Mercado, Iain P. Hartley, Stephen Sitch, Fernanda V. Cunha, Raffaello di Ponzio, Laynara F. Lugli, Carlos A. Quesada, Kelly M. Andersen, Sarah E. Chadburn, Andy J. Wiltshire, Douglas B. Clark, Gyovanni Ribeiro, Lara Siebert, Anna C. M. Moraes, Jéssica Schmeisk Rosa, Rafael Assis, and José L. Camargo
Geosci. Model Dev., 15, 5241–5269, https://doi.org/10.5194/gmd-15-5241-2022, https://doi.org/10.5194/gmd-15-5241-2022, 2022
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In tropical ecosystems, the availability of rock-derived elements such as P can be very low. Thus, without a representation of P cycling, tropical forest responses to rising atmospheric CO2 conditions in areas such as Amazonia remain highly uncertain. We introduced P dynamics and its interactions with the N and P cycles into the JULES model. Our results highlight the potential for high P limitation and therefore lower CO2 fertilization capacity in the Amazon forest with low-fertility soils.
Olga Dombrowski, Cosimo Brogi, Harrie-Jan Hendricks Franssen, Damiano Zanotelli, and Heye Bogena
Geosci. Model Dev., 15, 5167–5193, https://doi.org/10.5194/gmd-15-5167-2022, https://doi.org/10.5194/gmd-15-5167-2022, 2022
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Soil carbon storage and food production of fruit orchards will be influenced by climate change. However, they lack representation in models that study such processes. We developed and tested a new sub-model, CLM5-FruitTree, that describes growth, biomass distribution, and management practices in orchards. The model satisfactorily predicted yield and exchange of carbon, energy, and water in an apple orchard and can be used to study land surface processes in fruit orchards at different scales.
Jiaying Zhang, Rafael L. Bras, Marcos Longo, and Tamara Heartsill Scalley
Geosci. Model Dev., 15, 5107–5126, https://doi.org/10.5194/gmd-15-5107-2022, https://doi.org/10.5194/gmd-15-5107-2022, 2022
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We implemented hurricane disturbance in a vegetation dynamics model and calibrated the model with observations of a tropical forest. We used the model to study forest recovery from hurricane disturbance and found that a single hurricane disturbance enhances AGB and BA in the long term compared with a no-hurricane situation. The model developed and results presented in this study can be utilized to understand the impact of hurricane disturbances on forest recovery under the changing climate.
Prabhat Raj Dahal, Maria Lumbierres, Stuart H. M. Butchart, Paul F. Donald, and Carlo Rondinini
Geosci. Model Dev., 15, 5093–5105, https://doi.org/10.5194/gmd-15-5093-2022, https://doi.org/10.5194/gmd-15-5093-2022, 2022
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This paper describes the validation of area of habitat (AOH) maps produced for terrestrial birds and mammals. The main objective was to assess the accuracy of the maps based on independent data. We used open access data from repositories, such as ebird and gbif to check if our maps were a better reflection of species' distribution than random. When points were not available we used logistic models to validate the AOH maps. The majority of AOH maps were found to have a high accuracy.
Yoshiki Kanzaki, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 15, 4959–4990, https://doi.org/10.5194/gmd-15-4959-2022, https://doi.org/10.5194/gmd-15-4959-2022, 2022
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Increasing carbon dioxide in the atmosphere is an urgent issue in the coming century. Enhanced rock weathering in soils can be one of the most efficient C capture strategies. On the basis as a weathering simulator, the newly developed SCEPTER model implements bio-mixing by fauna/humans and enables organic matter and crushed rocks/minerals at the soil surface with an option to track their particle size distributions. Those features can be useful for evaluating the carbon capture efficiency.
Félicien Meunier, Sruthi M. Krishna Moorthy, Marc Peaucelle, Kim Calders, Louise Terryn, Wim Verbruggen, Chang Liu, Ninni Saarinen, Niall Origo, Joanne Nightingale, Mathias Disney, Yadvinder Malhi, and Hans Verbeeck
Geosci. Model Dev., 15, 4783–4803, https://doi.org/10.5194/gmd-15-4783-2022, https://doi.org/10.5194/gmd-15-4783-2022, 2022
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We integrated state-of-the-art observations of the structure of the vegetation in a temperate forest to constrain a vegetation model that aims to reproduce such an ecosystem in silico. We showed that the use of this information helps to constrain the model structure, its critical parameters, as well as its initial state. This research confirms the critical importance of the representation of the vegetation structure in vegetation models and proposes a method to overcome this challenge.
Joe R. Melton, Ed Chan, Koreen Millard, Matthew Fortier, R. Scott Winton, Javier M. Martín-López, Hinsby Cadillo-Quiroz, Darren Kidd, and Louis V. Verchot
Geosci. Model Dev., 15, 4709–4738, https://doi.org/10.5194/gmd-15-4709-2022, https://doi.org/10.5194/gmd-15-4709-2022, 2022
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Peat-ML is a high-resolution global peatland extent map generated using machine learning techniques. Peatlands are important in the global carbon and water cycles, but their extent is poorly known. We generated Peat-ML using drivers of peatland formation including climate, soil, geomorphology, and vegetation data, and we train the model with regional peatland maps. Our accuracy estimation approaches suggest Peat-ML is of similar or higher quality than other available peatland mapping products.
Qianyu Li, Shawn P. Serbin, Julien Lamour, Kenneth J. Davidson, Kim S. Ely, and Alistair Rogers
Geosci. Model Dev., 15, 4313–4329, https://doi.org/10.5194/gmd-15-4313-2022, https://doi.org/10.5194/gmd-15-4313-2022, 2022
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Stomatal conductance is the rate of water release from leaves’ pores. We implemented an optimal stomatal conductance model in a vegetation model. We then tested and compared it with the existing empirical model in terms of model responses to key environmental variables. We also evaluated the model with measurements at a tropical forest site. Our study suggests that the parameterization of conductance models and current model response to drought are the critical areas for improving models.
Veli Çağlar Yumruktepe, Annette Samuelsen, and Ute Daewel
Geosci. Model Dev., 15, 3901–3921, https://doi.org/10.5194/gmd-15-3901-2022, https://doi.org/10.5194/gmd-15-3901-2022, 2022
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We describe the coupled bio-physical model ECOSMO II(CHL), which is used for regional configurations for the North Atlantic and the Arctic hind-casting and operational purposes. The model is consistent with the large-scale climatological nutrient settings and is capable of representing regional and seasonal changes, and model primary production agrees with previous measurements. For the users of this model, this paper provides the underlying science, model evaluation and its development.
Cited articles
Aldersley, A., Murray, S. J., and Cornell, S. E.: Global and regional analysis of climate and human drivers of wildfire, Sci. Total Environ., 409, 3472–3481, https://doi.org/10.1016/j.scitotenv.2011.05.032, 2011.
Archibald, S., Roy, D. P., van Wilgen, B. W., and Scholes, R.: What limits fire? An examination of drivers of burnt area in Southern Africa, Glob. Change Biol., 15, 613–630, https://doi.org/10.1111/j.1365-2486.2008.01754.x, 2009.
Archibald, S., Lehmann, C. E. R., Gomez-Dans, J. L., and Bradstock, R. A.: Defining pyromes and global syndromes of fire regimes, P. Natl. Acad. Sci. USA, 110, 6442–6447, https://doi.org/10.1073/pnas.1211466110, 2013.
Arora, V. K. and Boer, G. J.: Fire as an interactive component of dynamic vegetation models, J. Geophys. Res., 110, G02008, https://doi.org/10.1029/2005JG000042, 2005.
Balch, J. K., Nepstad, D. C., Brando, P. M., Curran, L. M., Portela, O., de Carvalho, O., and Lefebvre, P.: Negative fire feedback in a transitional forest of southeastern Amazonia, Glob. Change Biol., 14, 2276–2287, https://doi.org/10.1111/j.1365-2486.2008.01655.x, 2008.
Bistinas, I., Harrison, S. P., Prentice, I. C., and Pereira, J. M. C.: Causal relationships versus emergent patterns in the global controls of fire frequency, Biogeosciences, 11, 5087–5101, https://doi.org/10.5194/bg-11-5087-2014, 2014.
Bond, W. J. and Kelley, J. E.: Fire as a global “herbivore”: the ecology and evolution of flammable ecosystems, Trends Ecol. Evol., 20, 387–394, https://doi.org/10.1016/j.tree.2005.04.025, 2005.
Bowman, D. M. J. S., Balch, J. K., Artaxo, P., Bond, W. J., Cochrane, M. A., D'antonio, C. M., DeFries, R., Johnston, F. H., Keeley, J. E., and Krawchuk, M. A.: The human dimension of fire regimes on Earth, J. Biogeogr., 38, 2223–2236, 2011.
Bryant, B. P. and Westerling, A. L.: Scenarios for future wildfire risk in California: links between changing demography, land use, climate, and wildfire, Environmetrics, 25, 454–471, https://doi.org/10.1002/env.2280, 2014.
Cecil, D. J., Buechler, D. E., and Blakeslee, R. J.: Gridded lightning climatology from TRMM-LIS and OTD: Dataset description, Atmos. Res., 135–136, 404–414, https://doi.org/10.1016/j.atmosres.2012.06.028, 2014.
Ciais, P., Sabine, C., Bala, G., Bopp, L., Brovkin, V., Canadell, J., Chhabra, A., DeFries, R., Galloway, J., Heimann, M., Jones, C., Le Quéré, C., Myneni, R., Piao, S., and Thornton, P.: Carbon and Other Biogeochemical Cycles, in: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, edited by: Stocker, T. F., Qin, D., Plattner, G.-K., Tignor, M., Allen, S. K., Boschung, J., Nauels, A., Xia, Y., Bex, V., and Midgley, P. M., Cambridge, United Kingdom and New York, NY, USA, 2013.
Doerr, S. H. and Santín, C.: Wildfire: A burning issue for insurers?, Tech. rep., available at: https://www.lloyds.com/news-and-insight/risk-insight/library/natural-environment/wildfire-report (last access: 7 November 2015), 2013.
Dunne, J. P., John, J. G., Shevliakova, E., Stouffer, R., Krasting, J. P., Malyshev, S., Milly, P. C. D., Sentman, L., Adcroft, A. J., Cooke, W., Dunne, K., Griffies, S. M., Hallberg, R. W., Harrison, M. J., Levy, H., Wittenberg, A. T., Phillips, P. J., and Zadeh, N.: GFDL's ESM2 Global Coupled Climate–Carbon Earth System Models. Part II: Carbon System Formulation and Baseline Simulation Characteristics, J. Climate, 26, 2247–2267, https://doi.org/10.1175/JCLI-D-12-00150.1, 2013.
Flannigan, M. D., Krawchuk, M., and de Groot, W. J.: Implications of changing climate for global wildland fire, Int. J. Wildland Fire, 18, 483–507, 2009.
Giglio, L., Randerson, J. T., van der Werf, G. R., Kasibhatla, P. S., Collatz, G. J., Morton, D. C., and DeFries, R. S.: Assessing variability and long-term trends in burned area by merging multiple satellite fire products, Biogeosciences, 7, 1171–1186, https://doi.org/10.5194/bg-7-1171-2010, 2010.
Gillett, N. P., Weaver, A. J., Zwiers, F. W., and Flannigan, M. D.: Detecting the effect of climate change on Canadian forest fires, Geophys. Res. Lett., 31, L18211, https://doi.org/10.1029/2004GL020876, 2004.
Haberl, H., Erb, K. H., and Krausmann, F.: Human appropriation of net primary production (HANPP), available at: http://isecoeco.org/pdf/2007_march_hanpp.pdf (last access: 6 April 2016), 2007.
Hahn, M. B., Gangnon, R. E., Barcellos, C., Asner, G. P., and Patz, J. A.: Influence of Deforestation, Logging, and Fire on Malaria in the Brazilian Amazon, PLoS One, 9, e85725, https://doi.org/10.1371/journal.pone.0085725.t003, 2014.
Hanna, M. M., Steyn-Ross, D. A., and Steyn-Ross, M.: Estimating Biomass for New Zealand Pasture Using Optical Remote Sensing Techniques, Geocarto Int., 14, 89–94, https://doi.org/10.1080/10106049908542121, 1999.
Hantson, S., Lasslop, G., Kloster, S., and Chuvieco, E.: Anthropogenic effects on global mean fire size, Int. J. Wildland Fire, 24, 589–596, https://doi.org/10.1071/WF14208, 2015.
Hantson, S., Arneth, A., Harrison, S. P., Kelley, D. I., Prentice, I. C., Rabin, S. S., Archibald, S., Mouillot, F., Arnold, S. R., Artaxo, P., Bachelet, D., Ciais, P., Forrest, M., Friedlingstein, P., Hickler, T., Kaplan, J. O., Kloster, S., Knorr, W., Lasslop, G., Li, F., Mangeon, S., Melton, J. R., Meyn, A., Sitch, S., Spessa, A., van der Werf, G. R., Voulgarakis, A., and Yue, C.: The status and challenge of global fire modelling, Biogeosciences, 13, 3359-3375, https://doi.org/10.5194/bg-13-3359-2016, 2016.
Hurtt, G. C., Chini, L. P., Frolking, S., Betts, R. A., Feddema, J., Fischer, G., Fisk, J. P., Hibbard, K., Houghton, R. A., Janetos, A., Jones, C. D., Kindermann, G., Kinoshita, T., Klein Goldewijk, K., Riahi, K., Shevliakova, E., Smith, S., Stehfest, E., Thomson, A., Thornton, P., van Vuuren, D. P., and Wang, Y. P.: Harmonization of land-use scenarios for the period 1500–2100: 600 years of global gridded annual land-use transitions, wood harvest, and resulting secondary lands, Climatic Change, 109, 117–161, https://doi.org/10.1007/s10584-011-0153-2, 2011.
Johnston, F. H., Henderson, S. B., Chen, Y., Randerson, J. T., Marlier, M. E., DeFries, R. S., Kinney, P. L., Bowman, D. M. J. S., and Brauer, M.: Estimated global mortality attributable to smoke from landscape fires, Environ. Health Persp., 120, 695–701, https://doi.org/10.1289/ehp.1104422, 2012.
Kagunyu, A., Wandibba, S., and Wanjohi, J. G.: The use of indigenous climate forecasting methods by the pastoralists of Northern Kenya, Pastoralism, 6, 1–6, https://doi.org/10.1186/s13570-016-0054-0, 2016.
Kauffman, J. B. and Cummings, D.: Fire in the Brazilian Amazon 2. Biomass, nutrient pools and losses in cattle pastures, Oecologia, 113, 415–427, 1998.
Kelley, D. I., Prentice, I. C., Harrison, S. P., Wang, H., Simard, M., Fisher, J. B., and Willis, K. O.: A comprehensive benchmarking system for evaluating global vegetation models, Biogeosciences, 10, 3313–3340, https://doi.org/10.5194/bg-10-3313-2013, 2013.
Klein Goldewijk, K., Beusen, A., Van Drecht, G., and De Vos, M.: The HYDE 3.1 spatially explicit database of human-induced global land-use change over the past 12,000 years, Global Ecol. Biogeogr., 20, 73–86, https://doi.org/10.1111/j.1466-8238.2010.00587.x, 2010.
Knorr, W., Kaminski, T., Arneth, A., and Weber, U.: Impact of human population density on fire frequency at the global scale, Biogeosciences, 11, 1085–1102, https://doi.org/10.5194/bg-11-1085-2014, 2014.
Korovin, G. N.: Analysis of the distribution of forest fires in Russia, in: Fire in Ecosystems of Boreal Eurasia, edited by: Goldammer, J. G. and Furyaev, V. V., Dordrecht, The Netherlands, 112–128, 1996.
Krause, A., Kloster, S., Wilkenskjeld, S., and Paeth, H.: The sensitivity of global wildfires to simulated past, present, and future lightning frequency, J. Geophys. Res.-Biogeo., 119, 312–322, https://doi.org/10.1002/(ISSN)2169-8961, 2014.
Krausmann, F., Erb, K.-H., Gingrich, S., Lauk, C., and Haberl, H.: Global patterns of socioeconomic biomass flows in the year 2000: A comprehensive assessment of supply, consumption and constraints, Ecol. Econ., 65, 471–487, https://doi.org/10.1016/j.ecolecon.2007.07.012, 2008.
Laris, P.: Burning the seasonal mosaic: Preventative burning strategies in the wooded savanna of southern Mali, Hum. Ecol., 30, 155–186, 2002.
Laris, P.: Humanizing Savanna Biogeography: Linking Human Practices with Ecological Patterns in a Frequently Burned Savanna of Southern Mali, Ann. Assoc. Am. Geogr., 101, 1067–1088, https://doi.org/10.1080/00045608.2011.560063, 2011.
Laurance, W. and Williamson, G.: Positive feedbacks among forest fragmentation, drought, and climate change in the Amazon, Conserv. Biol., 15, 1529–1535, 2001.
Lehsten, V., Harmand, P., Palumbo, I., and Arneth, A.: Modelling burned area in Africa, Biogeosciences, 7, 3199–3214, https://doi.org/10.5194/bg-7-3199-2010, 2010.
Le Page, Y., Oom, D., Silva, J. M. N., Jönsson, P., and Pereira, J. M. C.: Seasonality of vegetation fires as modified by human action: Observing the deviation from eco-climatic fire regimes, Global Ecol. Biogeogr., 19, 575–588, https://doi.org/10.1111/j.1466-8238.2010.00525.x, 2010.
Le Page, Y., Morton, D., Bond-Lamberty, B., Pereira, J. M. C., and Hurtt, G.: HESFIRE: a global fire model to explore the role of anthropogenic and weather drivers, Biogeosciences, 12, 887–903, https://doi.org/10.5194/bg-12-887-2015, 2015.
Levenberg, K.: A method for the solution of certain non-linear problems in least squares, Q. Appl. Math., 2, 164–168, 1944.
Li, F., Zeng, X. D., and Levis, S.: A process-based fire parameterization of intermediate complexity in a Dynamic Global Vegetation Model, Biogeosciences, 9, 2761-2780, https://doi.org/10.5194/bg-9-2761-2012, 2012.
Li, F., Levis, S., and Ward, D. S.: Quantifying the role of fire in the Earth system – Part 1: Improved global fire modeling in the Community Earth System Model (CESM1), Biogeosciences, 10, 2293–2314, https://doi.org/10.5194/bg-10-2293-2013, 2013.
Magi, B. I., Rabin, S., Shevliakova, E., and Pacala, S.: Separating agricultural and non-agricultural fire seasonality at regional scales, Biogeosciences, 9, 3003–3012, https://doi.org/10.5194/bg-9-3003-2012, 2012.
Marlier, M. E., DeFries, R. S., Voulgarakis, A., Kinney, P. L., Randerson, J. T., Shindell, D. T., Chen, Y., and Faluvegi, G.: El Niño and health risks from landscape fire emissions in southeast Asia, Nat. Clim. Change, 3, 131–136, https://doi.org/10.1038/nclimate1658, 2012.
Marquardt, D. W.: An Algorithm for Least-Squares Estimation of Nonlinear Parameters, J. Soc. Ind. Appl. Math., 11, 431–441, https://doi.org/10.1137/0111030, 1963.
Meinshausen, M., Smith, S. J., Calvin, K., Daniel, J. S., Kainuma, M. L. T., Lamarque, J.-F., Matsumoto, K., Montzka, S. A., Raper, S. C. B., Riahi, K., Thomson, A., Velders, G. J. M., and van Vuuren, D. P.: The RCP greenhouse gas concentrations and their extensions from 1765 to 2300, Climatic Change, 109, 213–241, https://doi.org/10.1007/s10584-011-0156-z, 2011.
Melton, J. R. and Arora, V. K.: Competition between plant functional types in the Canadian Terrestrial Ecosystem Model (CTEM) v. 2.0, Geosci. Model Dev., 9, 323–361, https://doi.org/10.5194/gmd-9-323-2016, 2016.
Nielsen, H. B.: Damping parameter in Marquardt's method, Tech. Rep. IMM-REP-1999-05, Lyngby, Denmark, 1999.
Nielsen, H. B.: marquardt.m, p. 2, available at: http://www2.imm.dtu.dk/projects/hbn_software/marquardt.m (last access: 22 Fenruary 2018), 2001.
Ottmar, R. D., Vihnanek, R. E., Miranda, H. S., Sato, M. N., and Andrade, S. M. A.: Stereo Photo Series for Quantifying Cerrado Fuels in Central Brazil, Volume I, Tech. Rep. Gen. Tech. Rep. PNW-GTR-519, 2001.
Pechony, O. and Shindell, D. T.: Fire parameterization on a global scale, J. Geophys. Res., 114, D16115, https://doi.org/10.1029/2009JD011927, 2009.
Pfeiffer, M., Spessa, A., and Kaplan, J. O.: A model for global biomass burning in preindustrial time: LPJ-LMfire (v1.0), Geosci. Model Dev., 6, 643–685, https://doi.org/10.5194/gmd-6-643-2013, 2013.
Porter, J. R., Xie, L., Challinor, A. J., Cochrane, K., Howden, S. M., Iqbal, M. M., Lobell, D. B., and Travasso, M. I.: Food Security and Food Production Systems, in: Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, edited by Field, C. B., Barros, V. R., Dokken, D. J., Mach, K. J., Mastrandrea, M. D., Bilir, T. E., Chatterjee, M., Ebi, K. L., Estrada, Y. O., Genova, R. C., Girma, B., Kissel, E. S., Levy, A. N., MacCracken, S., Mastrandrea, P. R., and White, L. L., Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 485–533, 2014.
Prentice, S. and Mackerras, D.: The ratio of cloud to cloud-ground lightning flashes in thunderstorms, J. Appl. Meteorol., 16, 1–6, 1977.
Rabin, S. S.: FINAL, pp. 1–2, https://doi.org/10.5281/zenodo.574451, available at: https://github.com/samsrabin/FINAL, 2017.
Rabin, S. S., Magi, B. I., Shevliakova, E., and Pacala, S. W.: Quantifying regional, time-varying effects of cropland and pasture on vegetation fire, Biogeosciences, 12, 6591–6604, https://doi.org/10.5194/bg-12-6591-2015, 2015.
Rabin, S. S., Melton, J. R., Lasslop, G., Bachelet, D., Forrest, M., Hantson, S., Kaplan, J. O., Li, F., Mangeon, S., Ward, D. S., Yue, C., Arora, V. K., Hickler, T., Kloster, S., Knorr, W., Nieradzik, L., Spessa, A., Folberth, G. A., Sheehan, T., Voulgarakis, A., Kelley, D. I., Prentice, I. C., Sitch, S., Harrison, S., and Arneth, A.: The Fire Modeling Intercomparison Project (FireMIP), phase 1: experimental and analytical protocols with detailed model descriptions, Geosci. Model Dev., 10, 1175–1197, https://doi.org/10.5194/gmd-10-1175-2017, 2017.
Ramankutty, N., Evan, A. T., Monfreda, C., and Foley, J. A.: Farming the planet: 1. Geographic distribution of global agricultural lands in the year 2000, Global Biogeochem. Cy., 22, GB1003, https://doi.org/10.1029/2007GB002952, 2008.
Randerson, J. T., Chen, Y., van der Werf, G. R., Rogers, B. M., and Morton, D. C.: Global burned area and biomass burning emissions from small fires, J. Geophys. Res., 117, G04012, https://doi.org/10.1029/2012JG002128, 2012.
Savadogo, P., Zida, D., Sawadogo, L., Tiveau, D., Tigabu, M., and Odén, P. C.: Fuel and fire characteristics in savanna–woodland of West Africa in relation to grazing and dominant grass type, Int. J. Wildland Fire, 16, 531–539, https://doi.org/10.1071/WF07011, 2007.
Sheffield, J., Goteti, G., and Wood, E. F.: Development of a 50-year high-resolution global dataset of meteorological forcings for land surface modeling, J. Climate, 19, 3088–3111, https://doi.org/10.1175/JCLI3790.1, 2006.
Shevliakova, E., Pacala, S. W., Malyshev, S., Hurtt, G. C., Milly, P. C. D., Caspersen, J. P., Sentman, L. T., Fisk, J. P., Wirth, C., and Crevoisier, C.: Carbon cycling under 300 years of land use change: Importance of the secondary vegetation sink, Global Biogeochem. Cy., 23, GB2022, https://doi.org/10.1029/2007GB003176, 2009.
Staver, A. C., Archibald, S., and Levin, S.: Tree cover in sub-Saharan Africa: rainfall and fire constrain forest and savanna as alternative stable states, Ecology, 92, 1063–1072, 2011.
Stocks, B. J., Mason, J. A., Todd, J. B., Bosch, E. M., Wotton, B. M., Amiro, B. D., Flannigan, M. D., Hirsch, K. G., Logan, K. A., Martell, D. L., and Skinner, W. R.: Large forest fires in Canada, 1959–1997, J. Geophys. Res., 108, 8149, https://doi.org/10.1029/2001JD000484, 2003.
Sulman, B. N., Phillips, R. P., Oishi, A. C., Shevliakova, E., and Pacala, S. W.: Microbe-driven turnover offsets mineral-mediated storage of soil carbon under elevated CO2, Nat. Clim. Change, 4, 1099–1102, https://doi.org/10.1038/nclimate2436, 2014.
Thonicke, K., Spessa, A., Prentice, I. C., Harrison, S. P., Dong, L., and Carmona-Moreno, C.: The influence of vegetation, fire spread and fire behaviour on biomass burning and trace gas emissions: results from a process-based model, Biogeosciences, 7, 1991–2011, https://doi.org/10.5194/bg-7-1991-2010, 2010.
Transtrum, M. K. and Sethna, J. P.: Improvements to the Levenberg-Marquardt algorithm for nonlinear least-squares minimization, available at: http://arxiv.org/abs/1201.5885 (last access: 18 November 2015), 2012.
Uhl, C. and Buschbacher, R.: A disturbing synergism between cattle ranch burning practices and selective tree harvesting in the eastern Amazon, Biotropica, 17, 265–268, 1985.
Uhl, C. and Kauffman, J.: Deforestation, fire susceptibility, and potential tree responses to fire in the eastern Amazon, Ecology, 71, 437–449, 1990.
van der Werf, G. R., Randerson, J. T., Giglio, L., Collatz, G. J., Kasibhatla, P. S., and Arellano Jr., A. F.: Interannual variability in global biomass burning emissions from 1997 to 2004, Atmos. Chem. Phys., 6, 3423–3441, https://doi.org/10.5194/acp-6-3423-2006, 2006.
van der Werf, G. R., Randerson, J. T., Giglio, L., Collatz, G. J., Mu, M., Kasibhatla, P. S., Morton, D. C., DeFries, R. S., Jin, Y., and van Leeuwen, T. T.: Global fire emissions and the contribution of deforestation, savanna, forest, agricultural, and peat fires (1997–2009), Atmos. Chem. Phys., 10, 11707–11735, https://doi.org/10.5194/acp-10-11707-2010, 2010.
van Vuuren, D. P., Lucas, P. L., and Hilderink, H.: Downscaling drivers of global environmental change: Enabling use of global SRES scenarios at the national and grid levels, Global Environ. Chang., 17, 114–130, https://doi.org/10.1016/j.gloenvcha.2006.04.004, 2007.
van Wagner, C. E.: A simple fire-growth model, Forest. Chron., 45, 103–104, https://doi.org/10.5558/tfc45103-2, 1969.
Venevsky, S., Thonicke, K., Sitch, S., and Cramer, W.: Simulating fire regimes in human-dominated ecosystems: Iberian Peninsula case study, Glob. Change Biol., 8, 984–998, 2002.
Ward, D. S., Kloster, S., Mahowald, N. M., Rogers, B. M., Randerson, J. T., and Hess, P. G.: The changing radiative forcing of fires: global model estimates for past, present and future, Atmos. Chem. Phys., 12, 10857–10886, https://doi.org/10.5194/acp-12-10857-2012, 2012.
Westerling, A. L., Hidalgo, H. G., Cayan, D. R., and Swetnam, T. W.: Warming and earlier spring increase western U.S. forest wildfire activity., Science, 313, 940–943, https://doi.org/10.1126/science.1128834, 2006.
Wirsenius, S.: Human Use of Land and Organic Materials: Modeling the Turnover of Biomass in the Global Food System, PhD thesis, Department of Physical Resource Theory, Chalmers University of Technology and Göteborg University, Göteburg, Sweden, 2000.
Yevich, R. and Logan, J. A.: An assessment of biofuel use and burning of agricultural waste in the developing world, Global Biogeochem. Cy., 17, 1095, https://doi.org/10.1029/2002GB001952, 2003.
Zhang, Y., Fu, R., Yu, H., Dickinson, R. E., Juarez, R. N., Chin, M., and Wang, H.: A regional climate model study of how biomass burning aerosol impacts land-atmosphere interactions over the Amazon, J. Geophys. Res., 113, D14S15, https://doi.org/10.1029/2007JD009449, 2008.
Short summary
This paper describes a new fire model that for the first time simulates how fire is used on cropland and pasture in the modern day, as imposed using a recently developed dataset. A non-agricultural fire module is fit algorithmically against non-agricultural burned area. Fitting improves performance and the general global pattern of fire is represented, but some gaps remain. The novel separation of agricultural burning from other fire may necessitate new design thinking in the future.
This paper describes a new fire model that for the first time simulates how fire is used on...
