Articles | Volume 8, issue 8
Geosci. Model Dev., 8, 2399–2417, 2015
https://doi.org/10.5194/gmd-8-2399-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Geosci. Model Dev., 8, 2399–2417, 2015
https://doi.org/10.5194/gmd-8-2399-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Development and technical paper 05 Aug 2015
Development and technical paper | 05 Aug 2015
The Yale Interactive terrestrial Biosphere model version 1.0: description, evaluation and implementation into NASA GISS ModelE2
X. Yue and N. Unger
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Jasdeep Singh Anand, Alessandro Anav, Marcello Vitale, Daniele Peano, Nadine Unger, Xu Yue, Robert J. Parker, and Hartmut Boesch
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-125, https://doi.org/10.5194/bg-2021-125, 2021
Preprint under review for BG
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Ozone damages plants, which prevents them from absorbing CO2 from the atmosphere. This poses a potential threat to preventing dangerous climate change. In this work, satellite observations of forest cover, ozone, climate, and growing season are combined with an empirical model to estimate the carbon lost due to ozone exposure over Europe. The estimated carbon losses agree well with prior modelled estimates, showing for the first time that satellites can be used to better understand this effect.
Yadong Lei, Xu Yue, Hong Liao, Lin Zhang, Yang Yang, Hao Zhou, Chenguang Tian, Cheng Gong, Yimian Ma, Lan Gao, and Yang Cao
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2020-1264, https://doi.org/10.5194/acp-2020-1264, 2021
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We present the first estimate of ozone enhancement by fire emissions through ozone-vegetation interactions using a fully coupled chemistry–vegetation model (GC-YIBs). In fire-prone areas, fire-induced ozone causes a positive feedback to surface ozone mainly because of the inhibition effects on stomatal conductance.
Pierre Friedlingstein, Michael O'Sullivan, Matthew W. Jones, Robbie M. Andrew, Judith Hauck, Are Olsen, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Corinne Le Quéré, Josep G. Canadell, Philippe Ciais, Robert B. Jackson, Simone Alin, Luiz E. O. C. Aragão, Almut Arneth, Vivek Arora, Nicholas R. Bates, Meike Becker, Alice Benoit-Cattin, Henry C. Bittig, Laurent Bopp, Selma Bultan, Naveen Chandra, Frédéric Chevallier, Louise P. Chini, Wiley Evans, Liesbeth Florentie, Piers M. Forster, Thomas Gasser, Marion Gehlen, Dennis Gilfillan, Thanos Gkritzalis, Luke Gregor, Nicolas Gruber, Ian Harris, Kerstin Hartung, Vanessa Haverd, Richard A. Houghton, Tatiana Ilyina, Atul K. Jain, Emilie Joetzjer, Koji Kadono, Etsushi Kato, Vassilis Kitidis, Jan Ivar Korsbakken, Peter Landschützer, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Zhu Liu, Danica Lombardozzi, Gregg Marland, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Yosuke Niwa, Kevin O'Brien, Tsuneo Ono, Paul I. Palmer, Denis Pierrot, Benjamin Poulter, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Adam J. P. Smith, Adrienne J. Sutton, Toste Tanhua, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Guido van der Werf, Nicolas Vuichard, Anthony P. Walker, Rik Wanninkhof, Andrew J. Watson, David Willis, Andrew J. Wiltshire, Wenping Yuan, Xu Yue, and Sönke Zaehle
Earth Syst. Sci. Data, 12, 3269–3340, https://doi.org/10.5194/essd-12-3269-2020, https://doi.org/10.5194/essd-12-3269-2020, 2020
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The Global Carbon Budget 2020 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Cheng Gong, Yadong Lei, Yimian Ma, Xu Yue, and Hong Liao
Atmos. Chem. Phys., 20, 3841–3857, https://doi.org/10.5194/acp-20-3841-2020, https://doi.org/10.5194/acp-20-3841-2020, 2020
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We evaluate ozone–vegetation feedback using a fully coupled chemistry–carbon–climate global model (ModelE2-YIBs). Ozone damage to photosynthesis, stomatal conductance, and isoprene emissions parameterized by different schemes and sensitivities is jointly considered. In general, surface ozone concentrations are increased due to ozone–vegetation interactions, especially over the regions with a high ambient ozone level such as the eastern US, eastern China, and western Europe.
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Geosci. Model Dev., 13, 1137–1153, https://doi.org/10.5194/gmd-13-1137-2020, https://doi.org/10.5194/gmd-13-1137-2020, 2020
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We coupled a dynamic vegetation model YIBs with the chemical transport model GEOS-Chem to develop a new tool for studying interactions between atmospheric chemistry and biosphere. Within this framework, leaf area index and stomatal conductance are predicted for chemical simulations. In turn, surface ozone causes negative impacts to plant growth and the consequent dry deposition. Such interactions are important for air pollution prediction but ignored in most of current chemical models.
Xu Yue, Hong Liao, Huijun Wang, Tianyi Zhang, Nadine Unger, Stephen Sitch, Zhaozhong Feng, and Jia Yang
Atmos. Chem. Phys., 20, 2353–2366, https://doi.org/10.5194/acp-20-2353-2020, https://doi.org/10.5194/acp-20-2353-2020, 2020
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We explore ecosystem responses in China to 1.5 °C global warming under stabilized versus transient pathways. Remarkably, GPP shows 30 % higher enhancement in the stabilized than the transient pathway because of the lower ozone (smaller damages to photosynthesis) and fewer aerosols (higher light availability) in the former pathway. Our analyses suggest that an associated reduction of CO2 and pollution emissions brings more benefits to ecosystems in China via 1.5 °C global warming.
Xu Yue, Susanna Strada, Nadine Unger, and Aihui Wang
Atmos. Chem. Phys., 17, 13699–13719, https://doi.org/10.5194/acp-17-13699-2017, https://doi.org/10.5194/acp-17-13699-2017, 2017
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Climate change will significantly increase wildfire emissions in boreal North America by the midcentury, leading to increased surface ozone and atmospheric aerosols. These air pollutants can affect vegetation photosynthesis through stomatal uptake (for ozone) and radiative and climatic perturbations (for aerosols). Using a carbon–chemistry–climate model, we estimate trivial ozone vegetation damages but significant aerosol-induced reduction in ecosystem productivity by the 2050s.
Xu Yue, Nadine Unger, Kandice Harper, Xiangao Xia, Hong Liao, Tong Zhu, Jingfeng Xiao, Zhaozhong Feng, and Jing Li
Atmos. Chem. Phys., 17, 6073–6089, https://doi.org/10.5194/acp-17-6073-2017, https://doi.org/10.5194/acp-17-6073-2017, 2017
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While it is widely recognized that air pollutants adversely affect human health and climate change, their impacts on the regional carbon balance are less well understood. We apply an Earth system model to quantify the combined effects of ozone and aerosol particles on net primary production in China. Ozone vegetation damage dominates over the aerosol effects, leading to a substantial net suppression of land carbon uptake in the present and future worlds.
Xu Yue and Nadine Unger
Atmos. Chem. Phys., 17, 1329–1342, https://doi.org/10.5194/acp-17-1329-2017, https://doi.org/10.5194/acp-17-1329-2017, 2017
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We study aerosol effects on net primary productivity (NPP) in China through perturbations in diffuse and direct radiation. Regional NPP responses are diverse, depending on local aerosol optical depth (AOD) and cloud amount. Two AOD threshold maps are derived to determine the potential for aerosol diffuse fertilization effects. The net impact of aerosol pollution is limited in China due to dense cloud cover, as well as the offset between regional fertilization and inhibition on NPP.
X. Yue, N. Unger, and Y. Zheng
Atmos. Chem. Phys., 15, 11931–11948, https://doi.org/10.5194/acp-15-11931-2015, https://doi.org/10.5194/acp-15-11931-2015, 2015
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We estimate decadal trends in land carbon fluxes and emissions of biogenic volatile organic compounds (BVOCs) during 1982-2011, with a focus on the feedback from biosphere (such as tree growth and phenology). Increases of LAI at peak season accounts for ~25% of the trends in GPP and isoprene emissions at the northern lands. However, phenological change alone does not promote regional carbon uptake and BVOC emissions.
X. Yue, L. J. Mickley, J. A. Logan, R. C. Hudman, M. V. Martin, and R. M. Yantosca
Atmos. Chem. Phys., 15, 10033–10055, https://doi.org/10.5194/acp-15-10033-2015, https://doi.org/10.5194/acp-15-10033-2015, 2015
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Based on simulated meteorology from 13 GCMs, we projected future wildfire activity in Alaskan and Canadian ecoregions by the mid-century. The most robust change is the increase of 150-390% in area burned over Alaska and western Canada. The models also predict an increase of 45-90% in the central and southern Canadian ecoregions, but a decrease of up to 50% in northern Canada. We further quantify how the changes in wildfire emissions may affect ozone concentrations in North America.
X. Yue, N. Unger, T. F. Keenan, X. Zhang, and C. S. Vogel
Biogeosciences, 12, 4693–4709, https://doi.org/10.5194/bg-12-4693-2015, https://doi.org/10.5194/bg-12-4693-2015, 2015
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We performed model inter-comparison and selected the best model capturing the spatial and temporal variations of observations to predict trends of forest phenology over the past 3 decades. Our results show that phenological trends, which are dominantly driven by temperature changes, are not uniform over the contiguous USA, with a significant spring advance in the east, an autumn delay in the northeast and west, but no evidence of change elsewhere.
L. Zhang, D. J. Jacob, X. Yue, N. V. Downey, D. A. Wood, and D. Blewitt
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Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-125, https://doi.org/10.5194/bg-2021-125, 2021
Preprint under review for BG
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Ozone damages plants, which prevents them from absorbing CO2 from the atmosphere. This poses a potential threat to preventing dangerous climate change. In this work, satellite observations of forest cover, ozone, climate, and growing season are combined with an empirical model to estimate the carbon lost due to ozone exposure over Europe. The estimated carbon losses agree well with prior modelled estimates, showing for the first time that satellites can be used to better understand this effect.
Yadong Lei, Xu Yue, Hong Liao, Lin Zhang, Yang Yang, Hao Zhou, Chenguang Tian, Cheng Gong, Yimian Ma, Lan Gao, and Yang Cao
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2020-1264, https://doi.org/10.5194/acp-2020-1264, 2021
Revised manuscript accepted for ACP
Short summary
Short summary
We present the first estimate of ozone enhancement by fire emissions through ozone-vegetation interactions using a fully coupled chemistry–vegetation model (GC-YIBs). In fire-prone areas, fire-induced ozone causes a positive feedback to surface ozone mainly because of the inhibition effects on stomatal conductance.
Pierre Friedlingstein, Michael O'Sullivan, Matthew W. Jones, Robbie M. Andrew, Judith Hauck, Are Olsen, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Corinne Le Quéré, Josep G. Canadell, Philippe Ciais, Robert B. Jackson, Simone Alin, Luiz E. O. C. Aragão, Almut Arneth, Vivek Arora, Nicholas R. Bates, Meike Becker, Alice Benoit-Cattin, Henry C. Bittig, Laurent Bopp, Selma Bultan, Naveen Chandra, Frédéric Chevallier, Louise P. Chini, Wiley Evans, Liesbeth Florentie, Piers M. Forster, Thomas Gasser, Marion Gehlen, Dennis Gilfillan, Thanos Gkritzalis, Luke Gregor, Nicolas Gruber, Ian Harris, Kerstin Hartung, Vanessa Haverd, Richard A. Houghton, Tatiana Ilyina, Atul K. Jain, Emilie Joetzjer, Koji Kadono, Etsushi Kato, Vassilis Kitidis, Jan Ivar Korsbakken, Peter Landschützer, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Zhu Liu, Danica Lombardozzi, Gregg Marland, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Yosuke Niwa, Kevin O'Brien, Tsuneo Ono, Paul I. Palmer, Denis Pierrot, Benjamin Poulter, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Adam J. P. Smith, Adrienne J. Sutton, Toste Tanhua, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Guido van der Werf, Nicolas Vuichard, Anthony P. Walker, Rik Wanninkhof, Andrew J. Watson, David Willis, Andrew J. Wiltshire, Wenping Yuan, Xu Yue, and Sönke Zaehle
Earth Syst. Sci. Data, 12, 3269–3340, https://doi.org/10.5194/essd-12-3269-2020, https://doi.org/10.5194/essd-12-3269-2020, 2020
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The Global Carbon Budget 2020 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
João C. Teixeira, Gerd Folberth, Fiona M. O'Connor, Nadine Unger, and Apostolos Voulgarakis
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-298, https://doi.org/10.5194/gmd-2020-298, 2020
Revised manuscript under review for GMD
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Fire constitutes a key process in the Earth System being driven by climate as well as affecting climate. However, studies on the effects of fires on atmospheric composition and climate have been limited to date. This work implements and assesses the coupling of an interactive fire model on atmospheric composition comparing it to an offline approach. This approach shows a good performance at a global scale. However, regional scale limitations lead to bias in modelling fire emissions.
Cheng Gong, Yadong Lei, Yimian Ma, Xu Yue, and Hong Liao
Atmos. Chem. Phys., 20, 3841–3857, https://doi.org/10.5194/acp-20-3841-2020, https://doi.org/10.5194/acp-20-3841-2020, 2020
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We evaluate ozone–vegetation feedback using a fully coupled chemistry–carbon–climate global model (ModelE2-YIBs). Ozone damage to photosynthesis, stomatal conductance, and isoprene emissions parameterized by different schemes and sensitivities is jointly considered. In general, surface ozone concentrations are increased due to ozone–vegetation interactions, especially over the regions with a high ambient ozone level such as the eastern US, eastern China, and western Europe.
Yadong Lei, Xu Yue, Hong Liao, Cheng Gong, and Lin Zhang
Geosci. Model Dev., 13, 1137–1153, https://doi.org/10.5194/gmd-13-1137-2020, https://doi.org/10.5194/gmd-13-1137-2020, 2020
Short summary
Short summary
We coupled a dynamic vegetation model YIBs with the chemical transport model GEOS-Chem to develop a new tool for studying interactions between atmospheric chemistry and biosphere. Within this framework, leaf area index and stomatal conductance are predicted for chemical simulations. In turn, surface ozone causes negative impacts to plant growth and the consequent dry deposition. Such interactions are important for air pollution prediction but ignored in most of current chemical models.
Xu Yue, Hong Liao, Huijun Wang, Tianyi Zhang, Nadine Unger, Stephen Sitch, Zhaozhong Feng, and Jia Yang
Atmos. Chem. Phys., 20, 2353–2366, https://doi.org/10.5194/acp-20-2353-2020, https://doi.org/10.5194/acp-20-2353-2020, 2020
Short summary
Short summary
We explore ecosystem responses in China to 1.5 °C global warming under stabilized versus transient pathways. Remarkably, GPP shows 30 % higher enhancement in the stabilized than the transient pathway because of the lower ozone (smaller damages to photosynthesis) and fewer aerosols (higher light availability) in the former pathway. Our analyses suggest that an associated reduction of CO2 and pollution emissions brings more benefits to ecosystems in China via 1.5 °C global warming.
Kandice L. Harper and Nadine Unger
Atmos. Chem. Phys., 18, 16931–16952, https://doi.org/10.5194/acp-18-16931-2018, https://doi.org/10.5194/acp-18-16931-2018, 2018
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Chemistry–climate modeling finds that the induced global-mean ozone forcing for 1990–2010 maritime Southeast Asian land cover change, including expansion of high-isoprene-emitting oil palm plantations, is +9.2 mW m−2. Regional land cover change drove stronger global-mean ozone enhancements in the upper troposphere than in the lower troposphere. The results indicate that this mechanism of ozone forcing may increase in importance in future years if regional oil palm expansion continues unabated.
Kandice L. Harper, Yiqi Zheng, and Nadine Unger
Geosci. Model Dev., 11, 4417–4434, https://doi.org/10.5194/gmd-11-4417-2018, https://doi.org/10.5194/gmd-11-4417-2018, 2018
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Multiple datasets and an optimization process based on atmospheric modeling are used to develop an updated spatially explicit inventory of contemporary natural methane fluxes and advance the representation of interactive methane in the ModelE2-YIBs global chemistry–climate model. Simulations using interactive methane can provide an improved understanding of chemistry–climate interactions. Strong model–measurement agreement is found for both the distribution and lifetime of atmospheric methane.
Yaoxian Huang, Nadine Unger, Trude Storelvmo, Kandice Harper, Yiqi Zheng, and Chris Heyes
Atmos. Chem. Phys., 18, 5219–5233, https://doi.org/10.5194/acp-18-5219-2018, https://doi.org/10.5194/acp-18-5219-2018, 2018
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We apply a global 3-D climate model to quantify the climate impacts of carbonaceous aerosols from solid fuel cookstove emissions. Without black carbon (BC) serving as ice nuclei (IN), global and Indian solid fuel cookstove aerosol emissions have net global cooling impacts. However, when BC acts as IN, the net sign of radiative impacts of carbonaceous aerosols from solid fuel cookstove emissions varies with the choice of maximum freezing efficiency of BC during ice cloud formation.
Jingqiu Mao, Annmarie Carlton, Ronald C. Cohen, William H. Brune, Steven S. Brown, Glenn M. Wolfe, Jose L. Jimenez, Havala O. T. Pye, Nga Lee Ng, Lu Xu, V. Faye McNeill, Kostas Tsigaridis, Brian C. McDonald, Carsten Warneke, Alex Guenther, Matthew J. Alvarado, Joost de Gouw, Loretta J. Mickley, Eric M. Leibensperger, Rohit Mathur, Christopher G. Nolte, Robert W. Portmann, Nadine Unger, Mika Tosca, and Larry W. Horowitz
Atmos. Chem. Phys., 18, 2615–2651, https://doi.org/10.5194/acp-18-2615-2018, https://doi.org/10.5194/acp-18-2615-2018, 2018
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This paper is aimed at discussing progress in evaluating, diagnosing, and improving air quality and climate modeling using comparisons to SAS observations as a guide to thinking about improvements to mechanisms and parameterizations in models.
Xu Yue, Susanna Strada, Nadine Unger, and Aihui Wang
Atmos. Chem. Phys., 17, 13699–13719, https://doi.org/10.5194/acp-17-13699-2017, https://doi.org/10.5194/acp-17-13699-2017, 2017
Short summary
Short summary
Climate change will significantly increase wildfire emissions in boreal North America by the midcentury, leading to increased surface ozone and atmospheric aerosols. These air pollutants can affect vegetation photosynthesis through stomatal uptake (for ozone) and radiative and climatic perturbations (for aerosols). Using a carbon–chemistry–climate model, we estimate trivial ozone vegetation damages but significant aerosol-induced reduction in ecosystem productivity by the 2050s.
Xu Yue, Nadine Unger, Kandice Harper, Xiangao Xia, Hong Liao, Tong Zhu, Jingfeng Xiao, Zhaozhong Feng, and Jing Li
Atmos. Chem. Phys., 17, 6073–6089, https://doi.org/10.5194/acp-17-6073-2017, https://doi.org/10.5194/acp-17-6073-2017, 2017
Short summary
Short summary
While it is widely recognized that air pollutants adversely affect human health and climate change, their impacts on the regional carbon balance are less well understood. We apply an Earth system model to quantify the combined effects of ozone and aerosol particles on net primary production in China. Ozone vegetation damage dominates over the aerosol effects, leading to a substantial net suppression of land carbon uptake in the present and future worlds.
Xu Yue and Nadine Unger
Atmos. Chem. Phys., 17, 1329–1342, https://doi.org/10.5194/acp-17-1329-2017, https://doi.org/10.5194/acp-17-1329-2017, 2017
Short summary
Short summary
We study aerosol effects on net primary productivity (NPP) in China through perturbations in diffuse and direct radiation. Regional NPP responses are diverse, depending on local aerosol optical depth (AOD) and cloud amount. Two AOD threshold maps are derived to determine the potential for aerosol diffuse fertilization effects. The net impact of aerosol pollution is limited in China due to dense cloud cover, as well as the offset between regional fertilization and inhibition on NPP.
Susanna Strada and Nadine Unger
Atmos. Chem. Phys., 16, 4213–4234, https://doi.org/10.5194/acp-16-4213-2016, https://doi.org/10.5194/acp-16-4213-2016, 2016
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We apply a global Earth system model to quantify the direct impacts of anthropogenic aerosols on gross primary productivity (GPP) and isoprene emission. On the global scale, GPP and isoprene emission are not sensitive to pollution aerosols, while at the regional scale they show a robust but opposite sensitivity to pollution aerosols. We posit that anthropogenic aerosols affect land carbon fluxes (GPP and isoprene emission) via radiative and thermal mechanisms that vary across regions.
Y. Zheng, N. Unger, A. Hodzic, L. Emmons, C. Knote, S. Tilmes, J.-F. Lamarque, and P. Yu
Atmos. Chem. Phys., 15, 13487–13506, https://doi.org/10.5194/acp-15-13487-2015, https://doi.org/10.5194/acp-15-13487-2015, 2015
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Nitrogen oxides (NOx) play an important but complex role in secondary organic aerosol (SOA) formation. In this study we update the SOA scheme in a global 3-D chemistry-climate model by implementing a 4-product volatility basis set (VBS) framework with NOx-dependent yields and simplified aging parameterizations. We find that the SOA decrease in response to a 50% reduction in anthropogenic NOx emissions is limited due to the buffering in different chemical pathways.
X. Yue, N. Unger, and Y. Zheng
Atmos. Chem. Phys., 15, 11931–11948, https://doi.org/10.5194/acp-15-11931-2015, https://doi.org/10.5194/acp-15-11931-2015, 2015
Short summary
Short summary
We estimate decadal trends in land carbon fluxes and emissions of biogenic volatile organic compounds (BVOCs) during 1982-2011, with a focus on the feedback from biosphere (such as tree growth and phenology). Increases of LAI at peak season accounts for ~25% of the trends in GPP and isoprene emissions at the northern lands. However, phenological change alone does not promote regional carbon uptake and BVOC emissions.
X. Yue, L. J. Mickley, J. A. Logan, R. C. Hudman, M. V. Martin, and R. M. Yantosca
Atmos. Chem. Phys., 15, 10033–10055, https://doi.org/10.5194/acp-15-10033-2015, https://doi.org/10.5194/acp-15-10033-2015, 2015
Short summary
Short summary
Based on simulated meteorology from 13 GCMs, we projected future wildfire activity in Alaskan and Canadian ecoregions by the mid-century. The most robust change is the increase of 150-390% in area burned over Alaska and western Canada. The models also predict an increase of 45-90% in the central and southern Canadian ecoregions, but a decrease of up to 50% in northern Canada. We further quantify how the changes in wildfire emissions may affect ozone concentrations in North America.
X. Yue, N. Unger, T. F. Keenan, X. Zhang, and C. S. Vogel
Biogeosciences, 12, 4693–4709, https://doi.org/10.5194/bg-12-4693-2015, https://doi.org/10.5194/bg-12-4693-2015, 2015
Short summary
Short summary
We performed model inter-comparison and selected the best model capturing the spatial and temporal variations of observations to predict trends of forest phenology over the past 3 decades. Our results show that phenological trends, which are dominantly driven by temperature changes, are not uniform over the contiguous USA, with a significant spring advance in the east, an autumn delay in the northeast and west, but no evidence of change elsewhere.
Y. Zheng, N. Unger, M. P. Barkley, and X. Yue
Atmos. Chem. Phys., 15, 8559–8576, https://doi.org/10.5194/acp-15-8559-2015, https://doi.org/10.5194/acp-15-8559-2015, 2015
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We apply two global observational data sets, gross primary productivity (GPP) and tropospheric formaldehyde column variability (HCHOv), to probe isoprene emission variability on large spatiotemporal scales. GPP and HCHOv are decoupled or weakly anticorrelated in regions and seasons when isoprene emission is high. Isoprene emission models that include soil moisture dependence demonstrate greater skill in reproducing observed seasonal GPP-HCHOv correlations in the southeast US and the Amazon.
X. Yue and N. Unger
Atmos. Chem. Phys., 14, 9137–9153, https://doi.org/10.5194/acp-14-9137-2014, https://doi.org/10.5194/acp-14-9137-2014, 2014
L. Zhang, D. J. Jacob, X. Yue, N. V. Downey, D. A. Wood, and D. Blewitt
Atmos. Chem. Phys., 14, 5295–5309, https://doi.org/10.5194/acp-14-5295-2014, https://doi.org/10.5194/acp-14-5295-2014, 2014
N. Unger, K. Harper, Y. Zheng, N. Y. Kiang, I. Aleinov, A. Arneth, G. Schurgers, C. Amelynck, A. Goldstein, A. Guenther, B. Heinesch, C. N. Hewitt, T. Karl, Q. Laffineur, B. Langford, K. A. McKinney, P. Misztal, M. Potosnak, J. Rinne, S. Pressley, N. Schoon, and D. Serça
Atmos. Chem. Phys., 13, 10243–10269, https://doi.org/10.5194/acp-13-10243-2013, https://doi.org/10.5194/acp-13-10243-2013, 2013
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WAP-1D-VAR v1.0: Development and Evaluation of a One-Dimensional Variational Data Assimilation Model for the Marine Ecosystem Along the West Antarctic Peninsula
CoupModel (v6.0): an ecosystem model for coupled phosphorus, nitrogen, and carbon dynamics – evaluated against empirical data from a climatic and fertility gradient in Sweden
Improving the representation of cropland sites in the Community Land Model (CLM) version 5.0
Numerical model to simulate long-term soil organic carbon and ground ice budget with permafrost and ice sheets (SOC-ICE-v1.0)
Calibrating soybean parameters in JULES 5.0 from the US-Ne2/3 FLUXNET sites and the SoyFACE-O3 experiment
Radiation model for the Baltic Sea with an explicit CDOM state variable: a case study with Model ERGOM (version 1.2)
Modeling long-term fire impact on ecosystem characteristics and surface energy using a process-based vegetation–fire model SSiB4/TRIFFID-Fire v1.0
Energy, water and carbon exchanges in managed forest ecosystems: description, sensitivity analysis and evaluation of the INRAE GO+ model, version 3.0
Improving Yasso15 soil carbon model estimates with ensemble adjustment Kalman filter state data assimilation
Oceanic and atmospheric methane cycling in the cGENIE Earth system model – release v0.9.14
Modeling the impacts of diffuse light fraction on photosynthesis in ORCHIDEE (v5453) land surface model
Description and evaluation of the process-based forest model 4C v2.2 at four European forest sites
SCOPE 2.0: A model to simulate vegetated land surface fluxes and satellite signals
A multi-isotope model for simulating soil organic carbon cycling in eroding landscapes (WATEM_C v1.0)
One-dimensional models of radiation transfer in heterogeneous canopies: a review, re-evaluation, and improved model
An improved mechanistic model for ammonia volatilization in Earth system models: Flow of Agricultural Nitrogen version 2 (FANv2)
Stoichiometrically coupled carbon and nitrogen cycling in the MIcrobial-MIneral Carbon Stabilization model version 1.0 (MIMICS-CN v1.0)
Short-term forecasting of regional biospheric CO2 fluxes in Europe using a light-use-efficiency model (VPRM, MPI-BGC version 1.2)
FLiES-SIF version 1.0: three-dimensional radiative transfer model for estimating solar induced fluorescence
The importance of management information and soil moisture representation for simulating tillage effects on N2O emissions in LPJmL5.0-tillage
Evaluation of CH4MODwetland and Terrestrial Ecosystem Model (TEM) used to estimate global CH4 emissions from natural wetlands
Simulating stable carbon isotopes in the ocean component of the FAMOUS general circulation model with MOSES1 (XOAVI)
Quantitative assessment of fire and vegetation properties in simulations with fire-enabled vegetation models from the Fire Model Intercomparison Project
Marine biogeochemical cycling and oceanic CO2 uptake simulated by the NUIST Earth System Model version 3 (NESM v3)
CLASSIC v1.0: the open-source community successor to the Canadian Land Surface Scheme (CLASS) and the Canadian Terrestrial Ecosystem Model (CTEM) – Part 1: Model framework and site-level performance
HR3DHG version 1: modeling the spatiotemporal dynamics of mercury in the Augusta Bay (southern Italy)
Using the International Tree-Ring Data Bank (ITRDB) records as century-long benchmarks for land-surface models
BPOP-v1 model: exploring the impact of changes in the biological pump on the shelf sea and ocean nutrient and redox state
P-model v1.0: an optimality-based light use efficiency model for simulating ecosystem gross primary production
HETEROFOR 1.0: a spatially explicit model for exploring the response of structurally complex forests to uncertain future conditions – Part 2: Phenology and water cycle
Dynamic upscaling of decomposition kinetics for carbon cycling models
CE-DYNAM (v1): a spatially explicit process-based carbon erosion scheme for use in Earth system models
A coupled pelagic–benthic–sympagic biogeochemical model for the Bering Sea: documentation and validation of the BESTNPZ model (v2019.08.23) within a high-resolution regional ocean model
FORests and HYdrology under Climate Change in Switzerland v1.0: a spatially distributed model combining hydrology and forest dynamics
ORCHIDEE MICT-LEAK (r5459), a global model for the production, transport, and transformation of dissolved organic carbon from Arctic permafrost regions – Part 2: Model evaluation over the Lena River basin
GLOBAL-FATE (version 1.0.0): A geographical information system (GIS)-based model for assessing contaminants fate in the global river network
A comparative assessment of the uncertainties of global surface ocean CO2 estimates using a machine-learning ensemble (CSIR-ML6 version 2019a) – have we hit the wall?
Guy Munhoven
Geosci. Model Dev., 14, 4225–4240, https://doi.org/10.5194/gmd-14-4225-2021, https://doi.org/10.5194/gmd-14-4225-2021, 2021
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SolveSAPHE (Munhoven, 2013) was the first package to calculate pH reliably from any physically sensible pair of total alkalinity (AlkT) and dissolved inorganic carbon (CT) data and to do so in an autonomous and efficient way. Here, we extend it to use CO2, HCO3 or CO3 instead of CT. For each one of these pairs, the new SolveSAPHE calculates all of the possible pH values (0, 1, or 2), again without any prior knowledge of the solutions.
Jaber Rahimi, Expedit Evariste Ago, Augustine Ayantunde, Sina Berger, Jan Bogaert, Klaus Butterbach-Bahl, Bernard Cappelaere, Jean-Martial Cohard, Jérôme Demarty, Abdoul Aziz Diouf, Ulrike Falk, Edwin Haas, Pierre Hiernaux, David Kraus, Olivier Roupsard, Clemens Scheer, Amit Kumar Srivastava, Torbern Tagesson, and Rüdiger Grote
Geosci. Model Dev., 14, 3789–3812, https://doi.org/10.5194/gmd-14-3789-2021, https://doi.org/10.5194/gmd-14-3789-2021, 2021
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West African Sahelian and Sudanian ecosystems are important regions for global carbon exchange, and they provide valuable food and fodder resources. Therefore, we simulated net ecosystem exchange and aboveground biomass of typical ecosystems in this region with an improved process-based biogeochemical model, LandscapeDNDC. Carbon stocks and exchange rates were particularly correlated with the abundance of trees. Grass and crop yields increased under humid climatic conditions.
Lauric Cécillon, François Baudin, Claire Chenu, Bent T. Christensen, Uwe Franko, Sabine Houot, Eva Kanari, Thomas Kätterer, Ines Merbach, Folkert van Oort, Christopher Poeplau, Juan Carlos Quezada, Florence Savignac, Laure N. Soucémarianadin, and Pierre Barré
Geosci. Model Dev., 14, 3879–3898, https://doi.org/10.5194/gmd-14-3879-2021, https://doi.org/10.5194/gmd-14-3879-2021, 2021
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Partitioning soil organic carbon (SOC) into fractions that are stable or active on a century scale is key for more accurate models of the carbon cycle. Here, we describe the second version of a machine-learning model, named PARTYsoc, which reliably predicts the proportion of the centennially stable SOC fraction at its northwestern European validation sites with Cambisols and Luvisols, the two dominant soil groups in this region, fostering modelling works of SOC dynamics.
Leah Birch, Christopher R. Schwalm, Sue Natali, Danica Lombardozzi, Gretchen Keppel-Aleks, Jennifer Watts, Xin Lin, Donatella Zona, Walter Oechel, Torsten Sachs, Thomas Andrew Black, and Brendan M. Rogers
Geosci. Model Dev., 14, 3361–3382, https://doi.org/10.5194/gmd-14-3361-2021, https://doi.org/10.5194/gmd-14-3361-2021, 2021
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The high-latitude landscape or Arctic–boreal zone has been warming rapidly, impacting the carbon balance both regionally and globally. Given the possible global effects of climate change, it is important to have accurate climate model simulations. We assess the simulation of the Arctic–boreal carbon cycle in the Community Land Model (CLM 5.0). We find biases in both the timing and magnitude photosynthesis. We then use observational data to improve the simulation of the carbon cycle.
Alexey N. Shiklomanov, Michael C. Dietze, Istem Fer, Toni Viskari, and Shawn P. Serbin
Geosci. Model Dev., 14, 2603–2633, https://doi.org/10.5194/gmd-14-2603-2021, https://doi.org/10.5194/gmd-14-2603-2021, 2021
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Airborne and satellite images are a great resource for calibrating and evaluating computer models of ecosystems. Typically, researchers derive ecosystem properties from these images and then compare models against these derived properties. Here, we present an alternative approach where we modify a model to predict what the satellite would see more directly. We then show how this approach can be used to calibrate model parameters using airborne data from forest sites in the northeastern US.
Leonardo Calle and Benjamin Poulter
Geosci. Model Dev., 14, 2575–2601, https://doi.org/10.5194/gmd-14-2575-2021, https://doi.org/10.5194/gmd-14-2575-2021, 2021
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We developed a model to simulate and track the age of ecosystems on Earth. We found that the effect of ecosystem age on net primary production and ecosystem respiration is as important as climate in large areas of every vegetated continent. The LPJ-wsl v2.0 age-class model simulates dynamic age-class distributions on Earth and represents another step forward towards understanding the role of demography in global ecosystems.
Christian Seiler, Joe R. Melton, Vivek K. Arora, and Libo Wang
Geosci. Model Dev., 14, 2371–2417, https://doi.org/10.5194/gmd-14-2371-2021, https://doi.org/10.5194/gmd-14-2371-2021, 2021
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This study evaluates how well the CLASSIC land surface model reproduces the energy, water, and carbon cycle when compared against a wide range of global observations. Special attention is paid to how uncertainties in the data used to drive and evaluate the model affect model skill. Our results show the importance of incorporating uncertainties when evaluating land surface models and that failing to do so may potentially misguide future model development.
Yuan Zhang, Olivier Boucher, Philippe Ciais, Laurent Li, and Nicolas Bellouin
Geosci. Model Dev., 14, 2029–2039, https://doi.org/10.5194/gmd-14-2029-2021, https://doi.org/10.5194/gmd-14-2029-2021, 2021
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We investigated different methods to reconstruct spatiotemporal distribution of the fraction of diffuse radiation (Fdf) to qualify the aerosol impacts on GPP using the ORCHIDEE_DF land surface model. We find that climatological-averaging methods which dampen the variability of Fdf can cause significant bias in the modeled diffuse radiation impacts on GPP. Better methods to reconstruct Fdf are recommended.
Guillaume Le Gland, Sergio M. Vallina, S. Lan Smith, and Pedro Cermeño
Geosci. Model Dev., 14, 1949–1985, https://doi.org/10.5194/gmd-14-1949-2021, https://doi.org/10.5194/gmd-14-1949-2021, 2021
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We present an ecological model called SPEAD wherein various phytoplankton compete for nutrients. Phytoplankton in SPEAD are characterized by two continuously distributed traits: optimal temperature and nutrient half-saturation. Trait diversity is sustained by allowing the traits to mutate at each generation. We show that SPEAD agrees well with a more classical discrete model for only a fraction of the cost. We also identify realistic values for the mutation rates to be used in future models.
Magnus Dahler Norling, Leah Amber Jackson-Blake, José-Luis Guerrero Calidonio, and James Edward Sample
Geosci. Model Dev., 14, 1885–1897, https://doi.org/10.5194/gmd-14-1885-2021, https://doi.org/10.5194/gmd-14-1885-2021, 2021
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In order to allow researchers to quickly prototype and build models of natural systems, we have created the Mobius framework. Such models can, for instance, be used to ask questions about what the impacts of land-use changes are to water quality in a river or lake, or the response of biogeochemical systems to climate change. The Mobius framework makes it quick to build models that run fast, which enables the user to explore many different scenarios and model formulations.
Xin Huang, Dan Lu, Daniel M. Ricciuto, Paul J. Hanson, Andrew D. Richardson, Xuehe Lu, Ensheng Weng, Sheng Nie, Lifen Jiang, Enqing Hou, Igor F. Steinmacher, and Yiqi Luo
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2021-33, https://doi.org/10.5194/gmd-2021-33, 2021
Revised manuscript accepted for GMD
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In the data-rich era, data assimilation is widely used to integrate abundant observations into models to reduce uncertainty in ecological forecasting. However, applications of data assimilation are restricted by highly technical requirements. To alleviate this technical burden, we developed a model-independent data assimilation (MIDA) module which is friendly to ecologists with limited programming skills. MIDA also supports flexible switch of different models or observations in DA analysis.
Bruno Ringeval, Christoph Müller, Thomas A. M. Pugh, Nathaniel D. Mueller, Philippe Ciais, Christian Folberth, Wenfeng Liu, Philippe Debaeke, and Sylvain Pellerin
Geosci. Model Dev., 14, 1639–1656, https://doi.org/10.5194/gmd-14-1639-2021, https://doi.org/10.5194/gmd-14-1639-2021, 2021
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We assess how and why global gridded crop models (GGCMs) differ in their simulation of potential yield. We build a GCCM emulator based on generic formalism and fit its parameters against aboveground biomass and yield at harvest simulated by eight GGCMs. Despite huge differences between GGCMs, we show that the calibration of a few key parameters allows the emulator to reproduce the GGCM simulations. Our simple but mechanistic model could help to improve the global simulation of potential yield.
Yunfei Wang, Yijian Zeng, Lianyu Yu, Peiqi Yang, Christiaan Van der Tol, Qiang Yu, Xiaoliang Lü, Huanjie Cai, and Zhongbo Su
Geosci. Model Dev., 14, 1379–1407, https://doi.org/10.5194/gmd-14-1379-2021, https://doi.org/10.5194/gmd-14-1379-2021, 2021
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This study integrates photosynthesis and transfer of energy, mass, and momentum in the soil–plant–atmosphere continuum system, via a simplified 1D root growth model. The results indicated that the simulation of land surface fluxes was significantly improved by considering the root water uptake, especially when vegetation was experiencing severe water stress. This finding highlights the importance of enhanced soil heat and moisture transfer in simulating ecosystem functioning.
Hyewon Heather Kim, Ya-Wei Luo, Hugh W. Ducklow, Oscar M. Schofield, Deborah K. Steinberg, and Scott C. Doney
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-375, https://doi.org/10.5194/gmd-2020-375, 2021
Revised manuscript accepted for GMD
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The West Antarctic Peninsula (WAP) is a rapidly warming region, revealed by multi-decadal observations. Despite the region being data-rich, there is a lack of focus on ecosystem model development. Here, we introduce a data assimilation ecosystem model for the WAP region. Experiments by assimilating data from an example growth season capture key WAP features. This study enables us to glue the snapshots from available data sets together to explain the observations in the WAP.
Hongxing He, Per-Erik Jansson, and Annemieke I. Gärdenäs
Geosci. Model Dev., 14, 735–761, https://doi.org/10.5194/gmd-14-735-2021, https://doi.org/10.5194/gmd-14-735-2021, 2021
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This study presents the integration of the phosphorus (P) cycle into CoupModel (v6.0, Coup-CNP). The extended Coup-CNP, which explicitly considers the symbiosis between soil microbes and plant roots, enables simulations of coupled C, N, and P dynamics for terrestrial ecosystems. Simulations from the new Coup-CNP model provide strong evidence that P fluxes need to be further considered in studies of how ecosystems and C turnover react to climate change.
Theresa Boas, Heye Bogena, Thomas Grünwald, Bernard Heinesch, Dongryeol Ryu, Marius Schmidt, Harry Vereecken, Andrew Western, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 14, 573–601, https://doi.org/10.5194/gmd-14-573-2021, https://doi.org/10.5194/gmd-14-573-2021, 2021
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In this study we were able to significantly improve CLM5 model performance for European cropland sites by adding a winter wheat representation, specific plant parameterizations for important cash crops, and a cover-cropping and crop rotation subroutine to its crop module. Our modifications should be applied in future studies of CLM5 to improve regional yield predictions and to better understand large-scale impacts of agricultural management on carbon, water, and energy fluxes.
Kazuyuki Saito, Hirokazu Machiya, Go Iwahana, Tokuta Yokohata, and Hiroshi Ohno
Geosci. Model Dev., 14, 521–542, https://doi.org/10.5194/gmd-14-521-2021, https://doi.org/10.5194/gmd-14-521-2021, 2021
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Soil organic carbon (SOC) and ground ice (ICE) are essential but under-documented information to assess the circum-Arctic permafrost degradation impacts. A simple numerical model of essential SOC and ICE dynamics, developed and integrated north of 50° N for 125,000 years since the last interglacial, reconstructed the history and 1° distribution of SOC and ICE consistent with current knowledge, together with successful demonstration of climatic and topographical controls on SOC evolution.
Felix Leung, Karina Williams, Stephen Sitch, Amos P. K. Tai, Andy Wiltshire, Jemma Gornall, Elizabeth A. Ainsworth, Timothy Arkebauer, and David Scoby
Geosci. Model Dev., 13, 6201–6213, https://doi.org/10.5194/gmd-13-6201-2020, https://doi.org/10.5194/gmd-13-6201-2020, 2020
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Ground-level ozone (O3) is detrimental to plant productivity and crop yield. Currently, the Joint UK Land Environment Simulator (JULES) includes a representation of crops (JULES-crop). The parameters for O3 damage in soybean in JULES-crop were calibrated against photosynthesis measurements from the Soybean Free Air Concentration Enrichment (SoyFACE). The result shows good performance for yield, and it helps contribute to understanding of the impacts of climate and air pollution on food security.
Thomas Neumann, Sampsa Koponen, Jenni Attila, Carsten Brockmann, Kari Kallio, Mikko Kervinen, Constant Mazeran, Dagmar Müller, Petra Philipson, Susanne Thulin, Sakari Väkevä, and Pasi Ylöstalo
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-318, https://doi.org/10.5194/gmd-2020-318, 2020
Revised manuscript accepted for GMD
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The Baltic Sea is heavily impacted by surrounding land. Therefore, the concentration of colored dissolved organic matter (CDOM) of terrestrial origin is relatively high and impacts the light penetration depth. Estimating a correct light climate is essential for ecosystem models. In this study, a method is developed to derive riverine CDOM from earth observation methods. The data are used as boundary conditions for an ecosystem model and the advantage over former approaches is shown.
Huilin Huang, Yongkang Xue, Fang Li, and Ye Liu
Geosci. Model Dev., 13, 6029–6050, https://doi.org/10.5194/gmd-13-6029-2020, https://doi.org/10.5194/gmd-13-6029-2020, 2020
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We developed a fire-coupled dynamic vegetation model that captures the spatial distribution, temporal variability, and especially the seasonal variability of fire regimes. The fire model is applied to assess the long-term fire impact on ecosystems and surface energy. We find that fire is an important determinant of the structure and function of the tropical savanna. By changing the vegetation composition and ecosystem characteristics, fire significantly alters surface energy balance.
Virginie Moreaux, Simon Martel, Alexandre Bosc, Delphine Picart, David Achat, Christophe Moisy, Raphael Aussenac, Christophe Chipeaux, Jean-Marc Bonnefond, Soisick Figuères, Pierre Trichet, Rémi Vezy, Vincent Badeau, Bernard Longdoz, André Granier, Olivier Roupsard, Manuel Nicolas, Kim Pilegaard, Giorgio Matteucci, Claudy Jolivet, Andrew T. Black, Olivier Picard, and Denis Loustau
Geosci. Model Dev., 13, 5973–6009, https://doi.org/10.5194/gmd-13-5973-2020, https://doi.org/10.5194/gmd-13-5973-2020, 2020
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The model GO+ describes the functioning of managed forests based upon biophysical and biogeochemical processes. It accounts for the impacts of forest operations on energy, water and carbon exchanges within the soil–vegetation–atmosphere continuum. It includes versatile descriptions of management operations. Its sensitivity and uncertainty are detailed and predictions are compared with observations about mass and energy exchanges, hydrological data, and tree growth variables from different sites.
Toni Viskari, Maisa Laine, Liisa Kulmala, Jarmo Mäkelä, Istem Fer, and Jari Liski
Geosci. Model Dev., 13, 5959–5971, https://doi.org/10.5194/gmd-13-5959-2020, https://doi.org/10.5194/gmd-13-5959-2020, 2020
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The research here established whether a Bayesian statistical method called state data assimilation could be used to improve soil organic carbon (SOC) forecasts. Our test case was a fallow experiment where SOC content was measured over several decades from a plot where all vegetation was removed. Our results showed that state data assimilation improved projections and allowed for the detailed model state be updated with coarse total carbon measurements.
Christopher T. Reinhard, Stephanie L. Olson, Sandra Kirtland Turner, Cecily Pälike, Yoshiki Kanzaki, and Andy Ridgwell
Geosci. Model Dev., 13, 5687–5706, https://doi.org/10.5194/gmd-13-5687-2020, https://doi.org/10.5194/gmd-13-5687-2020, 2020
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We provide documentation and testing of new developments for the oceanic and atmospheric methane cycles in the cGENIE Earth system model. The model is designed to explore Earth's methane cycle across a wide range of timescales and scenarios, in particular assessing the mean climate state and climate perturbations in Earth's deep past. We further document the impact of atmospheric oxygen levels and ocean chemistry on fluxes of methane to the atmosphere from the ocean biosphere.
Yuan Zhang, Ana Bastos, Fabienne Maignan, Daniel Goll, Olivier Boucher, Laurent Li, Alessandro Cescatti, Nicolas Vuichard, Xiuzhi Chen, Christof Ammann, M. Altaf Arain, T. Andrew Black, Bogdan Chojnicki, Tomomichi Kato, Ivan Mammarella, Leonardo Montagnani, Olivier Roupsard, Maria J. Sanz, Lukas Siebicke, Marek Urbaniak, Francesco Primo Vaccari, Georg Wohlfahrt, Will Woodgate, and Philippe Ciais
Geosci. Model Dev., 13, 5401–5423, https://doi.org/10.5194/gmd-13-5401-2020, https://doi.org/10.5194/gmd-13-5401-2020, 2020
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We improved the ORCHIDEE LSM by distinguishing diffuse and direct light in canopy and evaluated the new model with observations from 159 sites. Compared with the old model, the new model has better sunny GPP and reproduced the diffuse light fertilization effect observed at flux sites. Our simulations also indicate different mechanisms causing the observed GPP enhancement under cloudy conditions at different times. The new model has the potential to study large-scale impacts of aerosol changes.
Petra Lasch-Born, Felicitas Suckow, Christopher P. O. Reyer, Martin Gutsch, Chris Kollas, Franz-Werner Badeck, Harald K. M. Bugmann, Rüdiger Grote, Cornelia Fürstenau, Marcus Lindner, and Jörg Schaber
Geosci. Model Dev., 13, 5311–5343, https://doi.org/10.5194/gmd-13-5311-2020, https://doi.org/10.5194/gmd-13-5311-2020, 2020
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The process-based model 4C has been developed to study climate impacts on forests and is now freely available as an open-source tool. This paper provides a comprehensive description of the 4C version (v2.2) for scientific users of the model and presents an evaluation of 4C. The evaluation focused on forest growth, carbon water, and heat fluxes. We conclude that 4C is widely applicable, reliable, and ready to be released to the scientific community to use and further develop the model.
Peiqi Yang, Egor Prikaziuk, Wout Verhoef, and Christiaan van der Tol
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-251, https://doi.org/10.5194/gmd-2020-251, 2020
Revised manuscript accepted for GMD
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Since the first publication 11 years ago, the SCOPE model has been applied in remote sensing studies of solar-induced chlorophyll fluorescence (SIF), energy balance fluxes, gross primary productivity (GPP) and directional thermal signals. Here we present a thoroughly revised version, SCOPE 2.0, which features a number of new elements.
Zhengang Wang, Jianxiu Qiu, and Kristof Van Oost
Geosci. Model Dev., 13, 4977–4992, https://doi.org/10.5194/gmd-13-4977-2020, https://doi.org/10.5194/gmd-13-4977-2020, 2020
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This study developed a spatially distributed carbon cycling model applicable in an eroding landscape. It includes all three carbon isotopes so that it is able to represent the carbon isotopic compositions. The model is able to represent the observations that eroding area is enriched in 13C and depleted of 14C compared to depositional area. Our simulations show that the spatial variability of carbon isotopic properties in an eroding landscape is mainly caused by the soil redistribution.
Brian N. Bailey, María A. Ponce de León, and E. Scott Krayenhoff
Geosci. Model Dev., 13, 4789–4808, https://doi.org/10.5194/gmd-13-4789-2020, https://doi.org/10.5194/gmd-13-4789-2020, 2020
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Numerous models of plant radiation interception based on a range of assumptions are available in the literature, but the importance of each assumption is not well understood. In this work, we evaluate several assumptions common in simple models of radiation interception in canopies with widely spaced plants by comparing against a detailed 3-D model. This yielded a simple model based on readily measurable parameters that could accurately predict interception for a wide range of architectures.
Julius Vira, Peter Hess, Jeff Melkonian, and William R. Wieder
Geosci. Model Dev., 13, 4459–4490, https://doi.org/10.5194/gmd-13-4459-2020, https://doi.org/10.5194/gmd-13-4459-2020, 2020
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Mostly emitted by the agricultural sector, ammonia has an important role in atmospheric chemistry. We developed a model to simulate how ammonia emissions respond to changes in temperature and soil moisture, and we evaluated agricultural ammonia emissions globally. The simulated emissions agree with earlier estimates over many regions, but the results highlight the variability of ammonia emissions and suggest that emissions in warm climates may be higher than previously thought.
Emily Kyker-Snowman, William R. Wieder, Serita D. Frey, and A. Stuart Grandy
Geosci. Model Dev., 13, 4413–4434, https://doi.org/10.5194/gmd-13-4413-2020, https://doi.org/10.5194/gmd-13-4413-2020, 2020
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Microbes drive carbon (C) and nitrogen (N) transformations in soil, and soil models have started to include explicit microbial physiology and functioning to try to reduce uncertainty in soil–climate feedbacks. Here, we add N cycling to a microbially explicit soil C model and reproduce C and N dynamics in soil during litter decomposition across a range of sites. We discuss model-generated hypotheses about soil C and N cycling and highlight the need for landscape-scale model evaluation data.
Jinxuan Chen, Christoph Gerbig, Julia Marshall, and Kai Uwe Totsche
Geosci. Model Dev., 13, 4091–4106, https://doi.org/10.5194/gmd-13-4091-2020, https://doi.org/10.5194/gmd-13-4091-2020, 2020
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One of the essential challenge for atmospheric CO2 forecasting is predicting CO2 flux variation on synoptic timescale. For CAMS CO2 forecast, a process-based vegetation model is used.
In this research we evaluate another type of model (i.e., the light-use-efficiency model VPRM), which is a data-driven approach and thus ideal for realistic estimation, on its ability of flux prediction. Errors from different sources are assessed, and overall the model is capable of CO2 flux prediction.
Yuma Sakai, Hideki Kobayashi, and Tomomichi Kato
Geosci. Model Dev., 13, 4041–4066, https://doi.org/10.5194/gmd-13-4041-2020, https://doi.org/10.5194/gmd-13-4041-2020, 2020
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Chlorophyll fluorescence is one of the energy release pathways of excess incident light in the photosynthetic process. The canopy-scale Sun-induced chlorophyll fluorescence (SIF), which potentially provides a direct pathway to link leaf-level photosynthesis to global GPP, can be observed from satellites. We develop the three-dimensional Monte Carlo plant canopy radiative transfer model to understand the biological and physical mechanisms behind SIF emission from complex forest canopies.
Femke Lutz, Stephen Del Grosso, Stephen Ogle, Stephen Williams, Sara Minoli, Susanne Rolinski, Jens Heinke, Jetse J. Stoorvogel, and Christoph Müller
Geosci. Model Dev., 13, 3905–3923, https://doi.org/10.5194/gmd-13-3905-2020, https://doi.org/10.5194/gmd-13-3905-2020, 2020
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Previous findings have shown deviations between the LPJmL5.0-tillage model and results from meta-analyses on global estimates of tillage effects on N2O emissions. By comparing model results with observational data of four experimental sites and outputs from field-scale DayCent model simulations, we show that advancing information on agricultural management, as well as the representation of soil moisture dynamics, improves LPJmL5.0-tillage and the estimates of tillage effects on N2O emissions.
Tingting Li, Yanyu Lu, Lingfei Yu, Wenjuan Sun, Qing Zhang, Wen Zhang, Guocheng Wang, Zhangcai Qin, Lijun Yu, Hailing Li, and Ran Zhang
Geosci. Model Dev., 13, 3769–3788, https://doi.org/10.5194/gmd-13-3769-2020, https://doi.org/10.5194/gmd-13-3769-2020, 2020
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Reliable models are required to estimate global wetland CH4 emissions, which are the largest and most uncertain source of atmospheric CH4. This paper evaluated CH4MODwetland and TEM models against CH4 measurements from different continents and wetland types. Based on best-model performance, we estimated 117–125 Tg yr−1 of global CH4 emissions from wetlands for the period 2000–2010. Efforts should be made to reduce estimate uncertainties for different wetland types and regions.
Jennifer E. Dentith, Ruza F. Ivanovic, Lauren J. Gregoire, Julia C. Tindall, and Laura F. Robinson
Geosci. Model Dev., 13, 3529–3552, https://doi.org/10.5194/gmd-13-3529-2020, https://doi.org/10.5194/gmd-13-3529-2020, 2020
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We have added a new tracer (13C) into the ocean of the FAMOUS climate model to study large-scale circulation and the marine carbon cycle. The model captures the large-scale spatial pattern of observations but the simulated values are consistently higher than observed. In the first instance, our new tracer is therefore useful for recalibrating the physical and biogeochemical components of the model.
Stijn Hantson, Douglas I. Kelley, Almut Arneth, Sandy P. Harrison, Sally Archibald, Dominique Bachelet, Matthew Forrest, Thomas Hickler, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Lars Nieradzik, Sam S. Rabin, I. Colin Prentice, Tim Sheehan, Stephen Sitch, Lina Teckentrup, Apostolos Voulgarakis, and Chao Yue
Geosci. Model Dev., 13, 3299–3318, https://doi.org/10.5194/gmd-13-3299-2020, https://doi.org/10.5194/gmd-13-3299-2020, 2020
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Global fire–vegetation models are widely used, but there has been limited evaluation of how well they represent various aspects of fire regimes. Here we perform a systematic evaluation of simulations made by nine FireMIP models in order to quantify their ability to reproduce a range of fire and vegetation benchmarks. While some FireMIP models are better at representing certain aspects of the fire regime, no model clearly outperforms all other models across the full range of variables assessed.
Yifei Dai, Long Cao, and Bin Wang
Geosci. Model Dev., 13, 3119–3144, https://doi.org/10.5194/gmd-13-3119-2020, https://doi.org/10.5194/gmd-13-3119-2020, 2020
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NESM v3 is one of the CMIP6 registered Earth system models. We evaluate its ocean carbon cycle component and present its present-day and future oceanic CO2 uptake based on the CMIP6 historical and SSP5–8.5 scenarios. We hope that this paper can serve as a documentation of the marine biogeochemical cycle in NESM v3. Also, the model defects found and their underlying causes analyzed in this paper could help users and further model development.
Joe R. Melton, Vivek K. Arora, Eduard Wisernig-Cojoc, Christian Seiler, Matthew Fortier, Ed Chan, and Lina Teckentrup
Geosci. Model Dev., 13, 2825–2850, https://doi.org/10.5194/gmd-13-2825-2020, https://doi.org/10.5194/gmd-13-2825-2020, 2020
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We transitioned the CLASS-CTEM land surface model to an open-source community model format by modernizing the code base to make the model easier to use and understand, providing a complete software environment to run the model within, developing a benchmarking suite for model evaluation, and creating an infrastructure to support community involvement. The new model, the Canadian Land Surface Scheme including Biogeochemical Cycles (CLASSIC), is now available for the community to use and develop.
Giovanni Denaro, Daniela Salvagio Manta, Alessandro Borri, Maria Bonsignore, Davide Valenti, Enza Quinci, Andrea Cucco, Bernardo Spagnolo, Mario Sprovieri, and Andrea De Gaetano
Geosci. Model Dev., 13, 2073–2093, https://doi.org/10.5194/gmd-13-2073-2020, https://doi.org/10.5194/gmd-13-2073-2020, 2020
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The HR3DHG (high-resolution 3D mercury model) investigates the spatiotemporal behavior, in seawater and marine sediments, of three mercury species (elemental, inorganic, and organic mercury) in a highly polluted marine environment (Augusta Bay, southern Italy). The model shows fair agreement with the experimental data collected during six different oceanographic cruises and can possibly be used for a detailed exploration of the effects of climate change on mercury distribution.
Jina Jeong, Jonathan Barichivich, Philippe Peylin, Vanessa Haverd, Matthew J. McGrath, Nicolas Vuichard, Michael N. Evans, Flurin Babst, and Sebastiaan Luyssaert
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-29, https://doi.org/10.5194/gmd-2020-29, 2020
Revised manuscript accepted for GMD
Elisa Lovecchio and Timothy M. Lenton
Geosci. Model Dev., 13, 1865–1883, https://doi.org/10.5194/gmd-13-1865-2020, https://doi.org/10.5194/gmd-13-1865-2020, 2020
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We present here the newly developed BPOP box model. BPOP is aimed at studying the impact of large-scale changes in the biological pump, i.e. the cycle of production, export and remineralization of the marine organic matter, on the nutrient and oxygen concentrations in the shelf and open ocean. This model has been developed to investigate the global consequences of the evolution of larger and heavier phytoplankton cells but can be applied to a variety of past and future case studies.
Benjamin D. Stocker, Han Wang, Nicholas G. Smith, Sandy P. Harrison, Trevor F. Keenan, David Sandoval, Tyler Davis, and I. Colin Prentice
Geosci. Model Dev., 13, 1545–1581, https://doi.org/10.5194/gmd-13-1545-2020, https://doi.org/10.5194/gmd-13-1545-2020, 2020
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Estimating terrestrial photosynthesis relies on satellite data of vegetation cover and models simulating the efficiency by which light absorbed by vegetation is used for CO2 assimilation. This paper presents the P-model, a light use efficiency model derived from a carbon–water optimality principle, and evaluates its predictions of ecosystem-level photosynthesis against globally distributed observations. The model is implemented and openly accessible as an R package (rpmodel).
Louis de Wergifosse, Frédéric André, Nicolas Beudez, François de Coligny, Hugues Goosse, François Jonard, Quentin Ponette, Hugues Titeux, Caroline Vincke, and Mathieu Jonard
Geosci. Model Dev., 13, 1459–1498, https://doi.org/10.5194/gmd-13-1459-2020, https://doi.org/10.5194/gmd-13-1459-2020, 2020
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Given their key role in the simulation of climate impacts on tree growth, phenological and water balance processes must be integrated in models simulating forest dynamics under a changing environment. Here, we describe these processes integrated in HETEROFOR, a model accounting simultaneously for the functional, structural and spatial complexity to explore the forest response to forestry practices. The model evaluation using phenological and soil water content observations is quite promising.
Arjun Chakrawal, Anke M. Herrmann, John Koestel, Jerker Jarsjö, Naoise Nunan, Thomas Kätterer, and Stefano Manzoni
Geosci. Model Dev., 13, 1399–1429, https://doi.org/10.5194/gmd-13-1399-2020, https://doi.org/10.5194/gmd-13-1399-2020, 2020
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Soils are heterogeneous, which results in a nonuniform spatial distribution of substrates and the microorganisms feeding on them. Our results show that the variability in the spatial distribution of substrates and microorganisms at the pore scale is crucial because it affects how fast substrates are used by microorganisms and thus the decomposition rate observed at the soil core scale. This work provides a methodology to include microscale heterogeneity in soil carbon cycling models.
Victoria Naipal, Ronny Lauerwald, Philippe Ciais, Bertrand Guenet, and Yilong Wang
Geosci. Model Dev., 13, 1201–1222, https://doi.org/10.5194/gmd-13-1201-2020, https://doi.org/10.5194/gmd-13-1201-2020, 2020
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In this study we present the Carbon Erosion DYNAMics model (CE-DYNAM) that links sediment dynamics resulting from water erosion with the soil carbon cycle along a cascade of hillslopes, floodplains, and rivers. The model can simulate the removal of soil and carbon from eroding areas and their destination at regional scale. We calibrated and validated the model for the Rhine catchment, and we show that soil erosion is a potential large net carbon sink over the period 1850–2005.
Kelly Kearney, Albert Hermann, Wei Cheng, Ivonne Ortiz, and Kerim Aydin
Geosci. Model Dev., 13, 597–650, https://doi.org/10.5194/gmd-13-597-2020, https://doi.org/10.5194/gmd-13-597-2020, 2020
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We describe an ecosystem model for the Bering Sea. Biological components in the Bering Sea can be found in the water column, on and within the bottom sediments, and within the porous lower layer of seasonal sea ice. This model simulates the exchange of material between nutrients and plankton within all three environments. Here, we thoroughly document the model and assess its skill in capturing key biophysical features across the Bering Sea.
Matthias J. R. Speich, Massimiliano Zappa, Marc Scherstjanoi, and Heike Lischke
Geosci. Model Dev., 13, 537–564, https://doi.org/10.5194/gmd-13-537-2020, https://doi.org/10.5194/gmd-13-537-2020, 2020
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Climate change is expected to substantially affect natural processes, and simulation models are a valuable tool to anticipate these changes. In this study, we combine two existing models that each describe one aspect of the environment: forest dynamics and the terrestrial water cycle. The coupled model better described observed patterns in vegetation structure. We also found that including the effect of water availability on tree height and rooting depth improved the model.
Simon P. K. Bowring, Ronny Lauerwald, Bertrand Guenet, Dan Zhu, Matthieu Guimberteau, Pierre Regnier, Ardalan Tootchi, Agnès Ducharne, and Philippe Ciais
Geosci. Model Dev., 13, 507–520, https://doi.org/10.5194/gmd-13-507-2020, https://doi.org/10.5194/gmd-13-507-2020, 2020
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In this second part of the study, we performed simulations of the carbon and water budget of the Lena catchment with the land surface model ORCHIDEE MICT-LEAK, enabled to simulate dissolved organic carbon (DOC) production in soils and its transport and fate in high-latitude inland waters. We compare simulations using this model to existing data sources to show that it is capable of reproducing dissolved carbon fluxes of potentially great importance for the future of the global permafrost.
Carme Font, Francesco Bregoli, Vicenç Acuña, Sergi Sabater, and Rafael Marcé
Geosci. Model Dev., 12, 5213–5228, https://doi.org/10.5194/gmd-12-5213-2019, https://doi.org/10.5194/gmd-12-5213-2019, 2019
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GLOBAL-FATE is an open-source, multiplatform, and flexible model that simulates the fate of pharmaceutical-like compounds in the global river network. The model considers the consumption of pharmaceuticals by humans, differentiates between pharmaceutical load treated in wastewater treatment plants from that directly delivered to streams and rivers, and integrates lakes and reservoirs in calculations. GLOBAL-FATE is a powerful tool for pollutant impact studies at the global scale.
Luke Gregor, Alice D. Lebehot, Schalk Kok, and Pedro M. Scheel Monteiro
Geosci. Model Dev., 12, 5113–5136, https://doi.org/10.5194/gmd-12-5113-2019, https://doi.org/10.5194/gmd-12-5113-2019, 2019
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The ocean plays a vital role in mitigating climate change by taking up atmospheric carbon dioxide (CO2). Historically sparse ship-based measurements of surface ocean CO2 make direct estimates of CO2 exchange changes unreliable. We introduce a machine-learning ensemble approach to fill these observational gaps. Our method performs incrementally better relative to past methods, leading to our hypothesis that we are perhaps reaching the limitation of machine-learning algorithms' capability.
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Liu, H., Tian, F., Hu, H. C., Hu, H. P., and Sivapalan, M.: Soil moisture controls on patterns of grass green-up in Inner Mongolia: an index based approach, Hydrol. Earth Syst. Sci., 17, 805–815, https://doi.org/10.5194/hess-17-805-2013, 2013.
Lombardozzi, D., Sparks, J. P., and Bonan, G.: Integrating O3 influences on terrestrial processes: photosynthetic and stomatal response data available for regional and global modeling, Biogeosciences, 10, 6815–6831, https://doi.org/10.5194/bg-10-6815-2013, 2013.
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Short summary
The Yale Interactive terrestrial Biosphere model (YIBs) predicts land carbon fluxes and tree growth based on mature schemes but with special updates in phenology, ozone vegetation damage, and photosynthetic-dependent biogenic volatile organic compounds. Evaluations with data from 145 flux tower sites and multiple satellite products show that the model predicts reasonable magnitude, seasonality, and spatial distribution of land carbon fluxes.
The Yale Interactive terrestrial Biosphere model (YIBs) predicts land carbon fluxes and tree...
