Articles | Volume 7, issue 5
Geosci. Model Dev., 7, 2393–2408, 2014
https://doi.org/10.5194/gmd-7-2393-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue: The Transport Matrix Method (TMM) for ocean biogeochemical...
Geosci. Model Dev., 7, 2393–2408, 2014
https://doi.org/10.5194/gmd-7-2393-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Methods for assessment of models 16 Oct 2014
Methods for assessment of models | 16 Oct 2014
Methods to evaluate CaCO3 cycle modules in coupled global biogeochemical ocean models
W. Koeve et al.
Related authors
Karin Kvale, David P. Keller, Wolfgang Koeve, Katrin J. Meissner, Chris Somes, Wanxuan Yao, and Andreas Oschlies
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-235, https://doi.org/10.5194/gmd-2020-235, 2020
Revised manuscript under review for GMD
Short summary
Short summary
We present a new model of biological marine silicate cycling for the University of Victoria Earth System Climate Model (UVic ESCM). This new model adds diatoms, which are a key aspect of the biological carbon pump, to an existing ecosystem model. Our modifications change how the model responds to warming, with net primary production declining more strongly than in previous versions. Diatoms in particular are simulated to decline with climate warming due to their high nutrient requirements.
Iris Kriest, Paul Kähler, Wolfgang Koeve, Karin Kvale, Volkmar Sauerland, and Andreas Oschlies
Biogeosciences, 17, 3057–3082, https://doi.org/10.5194/bg-17-3057-2020, https://doi.org/10.5194/bg-17-3057-2020, 2020
Short summary
Short summary
Constants of global biogeochemical ocean models are often tuned
by handto match observations of nutrients or oxygen. We investigate the effect of this tuning by optimising six constants of a global biogeochemical model, simulated in five different offline circulations. Optimal values for three constants adjust to distinct features of the circulation applied and can afterwards be swapped among the circulations, without losing too much of the model's fit to observed quantities.
Fabian Reith, Wolfgang Koeve, David P. Keller, Julia Getzlaff, and Andreas Oschlies
Earth Syst. Dynam., 10, 711–727, https://doi.org/10.5194/esd-10-711-2019, https://doi.org/10.5194/esd-10-711-2019, 2019
Short summary
Short summary
This modeling study is the first one to look at the suitability and collateral effects of direct CO2 injection into the deep ocean as a means to bridge the gap between CO2 emissions and climate impacts of an intermediate CO2 emission scenario and a temperature target on a millennium timescale, such as the 1.5 °C climate target of the Paris Agreement.
Tronje P. Kemena, Angela Landolfi, Andreas Oschlies, Klaus Wallmann, and Andrew W. Dale
Earth Syst. Dynam., 10, 539–553, https://doi.org/10.5194/esd-10-539-2019, https://doi.org/10.5194/esd-10-539-2019, 2019
Short summary
Short summary
Oceanic deoxygenation is driven by climate change in several areas of the global ocean. Measurements indicate that ocean volumes with very low oxygen levels expand, with consequences for marine organisms and fishery. We found climate-change-driven phosphorus (P) input in the ocean is hereby an important driver for deoxygenation on longer timescales with effects in the next millennia.
W. Koeve, H. Wagner, P. Kähler, and A. Oschlies
Geosci. Model Dev., 8, 2079–2094, https://doi.org/10.5194/gmd-8-2079-2015, https://doi.org/10.5194/gmd-8-2079-2015, 2015
Short summary
Short summary
The natural abundance of 14C in CO2 dissolved in seawater is often used to evaluate circulation and age in the ocean and in ocean models. We study limitations of using natural 14C to determine the time elapsed since water had contact with the atmosphere. We find that, globally, bulk 14C age is dominated by two equally important components, (1) the time component of circulation and (2) the “preformed 14C-age”. Considering preformed 14C-age is critical for an assessment of circulation in models.
O. Duteil, W. Koeve, A. Oschlies, D. Bianchi, E. Galbraith, I. Kriest, and R. Matear
Biogeosciences, 10, 7723–7738, https://doi.org/10.5194/bg-10-7723-2013, https://doi.org/10.5194/bg-10-7723-2013, 2013
Pierre Damien, Julio Sheinbaum, Orens Pasqueron de Fommervault, Julien Jouanno, Lorena Linacre, and Olaf Duteil
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-490, https://doi.org/10.5194/bg-2020-490, 2021
Revised manuscript under review for BG
Short summary
Short summary
The Gulf of Mexico deep waters are relatively poor in phytoplankton biomass due to low levels of nutrient in the upper layers. Using modelling techniques, we find that the long-living anticyclonic Loop Current Eddies that are shed episodically from the Yucatan Channel strongly shape the distribution of phytoplanktons and, more importantly, stimulate their growth. This results from the contribution of multiple mechanisms of physical-biogeochemical interactions discussed in this study.
Mariana Hill Cruz, Iris Kriest, Yonss Saranga José, Rainer Kiko, Helena Hauss, and Andreas Oschlies
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-417, https://doi.org/10.5194/bg-2020-417, 2020
Preprint under review for BG
Short summary
Short summary
In this study we use a regional biogeochemical model of the Eastern Tropical South Pacific Ocean to implicitly simulate the effect that fluctuations in populations of small pelagic fish, such as anchovy and sardine, may have on the biogeochemistry of the Northern Humboldt Current System. To do so, we vary the zooplankton mortality in the model, under the assumption that these fishes eat zooplankton. We also evaluate the model for the first time against mesozooplankton observations.
Tim Rixen, Greg Cowie, Birgit Gaye, Joaquim Goes, Helga do Rosário Gomes, Raleigh R. Hood, Zouhair Lachkar, Henrike Schmidt, Joachim Segschneider, and Arvind Singh
Biogeosciences, 17, 6051–6080, https://doi.org/10.5194/bg-17-6051-2020, https://doi.org/10.5194/bg-17-6051-2020, 2020
Short summary
Short summary
The northern Indian Ocean hosts an extensive oxygen minimum zone (OMZ), which intensified due to human-induced global changes. This includes the occurrence of anoxic events on the Indian shelf and affects benthic ecosystems and the pelagic ecosystem structure in the Arabian Sea. Consequences for biogeochemical cycles are unknown, which, in addition to the poor representation of mesoscale features, reduces the reliability of predictions of the future OMZ development in the northern Indian Ocean.
Chia-Te Chien, Markus Pahlow, Markus Schartau, and Andreas Oschlies
Geosci. Model Dev., 13, 4691–4712, https://doi.org/10.5194/gmd-13-4691-2020, https://doi.org/10.5194/gmd-13-4691-2020, 2020
Short summary
Short summary
We demonstrate sensitivities of tracers to parameters of a new optimality-based plankton–ecosystem model (OPEM) in the UVic-ESCM. We find that changes in phytoplankton subsistence nitrogen quota strongly impact the nitrogen inventory, nitrogen fixation, and elemental stoichiometry of ordinary phytoplankton and diazotrophs. We introduce a new likelihood-based metric for model calibration, and it shows the capability of constraining globally averaged oxygen, nitrate, and DIC concentrations.
Markus Pahlow, Chia-Te Chien, Lionel A. Arteaga, and Andreas Oschlies
Geosci. Model Dev., 13, 4663–4690, https://doi.org/10.5194/gmd-13-4663-2020, https://doi.org/10.5194/gmd-13-4663-2020, 2020
Short summary
Short summary
The stoichiometry of marine biotic processes is important for the regulation of atmospheric CO2 and hence the global climate. We replace a simplistic, fixed-stoichiometry plankton module in an Earth system model with an optimal-regulation model with variable stoichiometry. Our model compares better to the observed carbon transfer from the surface to depth and surface nutrient distributions. This work could aid our ability to describe and project the role of marine ecosystems in the Earth system.
Nadine Mengis, David P. Keller, Andrew H. MacDougall, Michael Eby, Nesha Wright, Katrin J. Meissner, Andreas Oschlies, Andreas Schmittner, Alexander J. MacIsaac, H. Damon Matthews, and Kirsten Zickfeld
Geosci. Model Dev., 13, 4183–4204, https://doi.org/10.5194/gmd-13-4183-2020, https://doi.org/10.5194/gmd-13-4183-2020, 2020
Short summary
Short summary
In this paper, we evaluate the newest version of the University of Victoria Earth System Climate Model (UVic ESCM 2.10). Combining recent model developments as a joint effort, this version is to be used in the next phase of model intercomparison and climate change studies. The UVic ESCM 2.10 is capable of reproducing changes in historical temperature and carbon fluxes well. Additionally, the model is able to reproduce the three-dimensional distribution of many ocean tracers.
Karin Kvale, David P. Keller, Wolfgang Koeve, Katrin J. Meissner, Chris Somes, Wanxuan Yao, and Andreas Oschlies
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-235, https://doi.org/10.5194/gmd-2020-235, 2020
Revised manuscript under review for GMD
Short summary
Short summary
We present a new model of biological marine silicate cycling for the University of Victoria Earth System Climate Model (UVic ESCM). This new model adds diatoms, which are a key aspect of the biological carbon pump, to an existing ecosystem model. Our modifications change how the model responds to warming, with net primary production declining more strongly than in previous versions. Diatoms in particular are simulated to decline with climate warming due to their high nutrient requirements.
Sabine Mathesius, Julia Getzlaff, Heiner Dietze, Andreas Oschlies, and Markus Schartau
Earth Syst. Sci. Data, 12, 1775–1787, https://doi.org/10.5194/essd-12-1775-2020, https://doi.org/10.5194/essd-12-1775-2020, 2020
Short summary
Short summary
Controlled manipulation of environmental conditions within large enclosures in the ocean, pelagic mesocosms, has become a standard method to explore responses of marine plankton communities to anthropogenic change. Among the challenges of interpreting mesocosm data is the often uncertain role of vertical mixing. This study introduces a mesocosm mixing model that is able to estimate vertical diffusivities and thus provides a tool for future mesocosm data analyses that account for mixing.
Iris Kriest, Paul Kähler, Wolfgang Koeve, Karin Kvale, Volkmar Sauerland, and Andreas Oschlies
Biogeosciences, 17, 3057–3082, https://doi.org/10.5194/bg-17-3057-2020, https://doi.org/10.5194/bg-17-3057-2020, 2020
Short summary
Short summary
Constants of global biogeochemical ocean models are often tuned
by handto match observations of nutrients or oxygen. We investigate the effect of this tuning by optimising six constants of a global biogeochemical model, simulated in five different offline circulations. Optimal values for three constants adjust to distinct features of the circulation applied and can afterwards be swapped among the circulations, without losing too much of the model's fit to observed quantities.
Jaard Hauschildt, Soeren Thomsen, Vincent Echevin, Andreas Oschlies, Yonss Saranga José, Gerd Krahmann, Laura A. Bristow, and Gaute Lavik
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-112, https://doi.org/10.5194/bg-2020-112, 2020
Revised manuscript under review for BG
Short summary
Short summary
In this paper we quantify the subduction of upwelled nitrate due to physical processes on the order of several kilometers in the coastal upwelling off Peru and its effect on primary production. We also compare the prepresentation of these processes in a high-resolution simulation (~2.5 km) with a more coarsely resolved simulation (~12 km). To do this, we combine high-resolution shipboard observations of physical and biogeochemical parameters with a complex biogeochemical model configuration.
Olaf Duteil, Ivy Frenger, and Julia Getzlaff
Ocean Sci. Discuss., https://doi.org/10.5194/os-2020-17, https://doi.org/10.5194/os-2020-17, 2020
Preprint under review for OS
Short summary
Short summary
Tropical oxygen minimum zones expanded during the last decades. One of the process responsible of the supply of oxygen in the eastern tropical regions is the transport of oxygen-rich water masses originating from the high latitudes. We highlight that most of current climate numerical models present strong biases : high latitude and tropical oxygen levels are too low and the deep currents systems are too weak. These biases need to be reduced to perform reliable projections in a changing climate.
Fabian Reith, Wolfgang Koeve, David P. Keller, Julia Getzlaff, and Andreas Oschlies
Earth Syst. Dynam., 10, 711–727, https://doi.org/10.5194/esd-10-711-2019, https://doi.org/10.5194/esd-10-711-2019, 2019
Short summary
Short summary
This modeling study is the first one to look at the suitability and collateral effects of direct CO2 injection into the deep ocean as a means to bridge the gap between CO2 emissions and climate impacts of an intermediate CO2 emission scenario and a temperature target on a millennium timescale, such as the 1.5 °C climate target of the Paris Agreement.
Tronje P. Kemena, Angela Landolfi, Andreas Oschlies, Klaus Wallmann, and Andrew W. Dale
Earth Syst. Dynam., 10, 539–553, https://doi.org/10.5194/esd-10-539-2019, https://doi.org/10.5194/esd-10-539-2019, 2019
Short summary
Short summary
Oceanic deoxygenation is driven by climate change in several areas of the global ocean. Measurements indicate that ocean volumes with very low oxygen levels expand, with consequences for marine organisms and fishery. We found climate-change-driven phosphorus (P) input in the ocean is hereby an important driver for deoxygenation on longer timescales with effects in the next millennia.
Daniela Niemeyer, Iris Kriest, and Andreas Oschlies
Biogeosciences, 16, 3095–3111, https://doi.org/10.5194/bg-16-3095-2019, https://doi.org/10.5194/bg-16-3095-2019, 2019
Short summary
Short summary
Recent studies suggest spatial variations of the marine particle flux length scale. Using a global biogeochemical ocean model, we investigate whether changes in particle size and size-dependent sinking can explain this variation. We address uncertainties by varying aggregate properties and circulation. Both aspects have an impact on the representation of nutrients, oxygen and oxygen minimum zones. The formation and sinking of large aggregates in productive areas lead to deeper flux penetration.
Malte Heinemann, Joachim Segschneider, and Birgit Schneider
Geosci. Model Dev., 12, 1869–1883, https://doi.org/10.5194/gmd-12-1869-2019, https://doi.org/10.5194/gmd-12-1869-2019, 2019
Short summary
Short summary
Ocean CO2 uptake played a crucial role for the global cooling during ice ages. Dust formation, e.g. by ice scraping over bedrock, potentially contributed to this CO2 uptake because (1) the iron in the dust is a fertilizer and (2) the heavy dust particles can accelerate sinking organic matter (ballasting hypothesis). This study tests the glacial dust ballasting hypothesis for the first time, using an ocean model. It turns out, however, that the ballasting effect probably played a minor role.
Yonss Saranga José, Lothar Stramma, Sunke Schmidtko, and Andreas Oschlies
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-155, https://doi.org/10.5194/bg-2019-155, 2019
Revised manuscript accepted for BG
Short summary
Short summary
In situ observations along the Peruvian and Chilean coasts have exhibited variability in the water column oxygen concentration. This variability, which is attributed to the El Niño Southern Oscillation (ENSO), might have implication on the vertical extension of the Eastern Tropical South Pacific (ETSP) oxygen minimum zone. Here using a coupled physical-biogeochemical model, we provide new insights into how ENSO variability affects the vertical extension of the oxygen-poor waters of the ETSP.
Olaf Duteil, Andreas Oschlies, and Claus W. Böning
Biogeosciences, 15, 7111–7126, https://doi.org/10.5194/bg-15-7111-2018, https://doi.org/10.5194/bg-15-7111-2018, 2018
Short summary
Short summary
Oxygen-depleted regions of the Pacific Ocean are currently expanding, which is threatening marine habitats. Based on numerical simulations, we show that the decrease in the intensity of the trade winds and the subsequent slowdown of the oceanic currents lead to a reduction in oxygen supply. Our study suggests that the prevailing positive conditions of the Pacific Decadal Oscillation since 1975, a major source of natural variability, may explain a significant part of the current deoxygenation.
Marine Bretagnon, Aurélien Paulmier, Véronique Garçon, Boris Dewitte, Séréna Illig, Nathalie Leblond, Laurent Coppola, Fernando Campos, Federico Velazco, Christos Panagiotopoulos, Andreas Oschlies, J. Martin Hernandez-Ayon, Helmut Maske, Oscar Vergara, Ivonne Montes, Philippe Martinez, Edgardo Carrasco, Jacques Grelet, Olivier Desprez-De-Gesincourt, Christophe Maes, and Lionel Scouarnec
Biogeosciences, 15, 5093–5111, https://doi.org/10.5194/bg-15-5093-2018, https://doi.org/10.5194/bg-15-5093-2018, 2018
Short summary
Short summary
In oxygen minimum zone, the fate of the organic matter is a key question as the low oxygen condition would preserve the OM and thus enhance the biological carbon pump while the high microbial activity would foster the remineralisation and the greenhouse gases emission. To investigate this paradigm, sediment traps were deployed off Peru. We pointed out the influence of the oxygenation as well as the organic matter quantity and quality on the carbon transfer efficiency in the oxygen minimum zone.
Joachim Segschneider, Birgit Schneider, and Vyacheslav Khon
Biogeosciences, 15, 3243–3266, https://doi.org/10.5194/bg-15-3243-2018, https://doi.org/10.5194/bg-15-3243-2018, 2018
Short summary
Short summary
To gain a better understanding of climate and marine biogeochemistry variations over the last 9500 years (the Holocene), we performed non-accelerated model simulations with a global coupled climate and biogeochemistry model forced by orbital parameters and atmospheric greenhouse gases. One main outcome is an increase in the volume of the eastern equatorial Pacific oxygen minimum zone, driven by a slowdown of the large-scale circulation.
Volkmar Sauerland, Ulrike Löptien, Claudine Leonhard, Andreas Oschlies, and Anand Srivastav
Geosci. Model Dev., 11, 1181–1198, https://doi.org/10.5194/gmd-11-1181-2018, https://doi.org/10.5194/gmd-11-1181-2018, 2018
Short summary
Short summary
We present a concept to prove that a parametric model is well calibrated, i.e., that changes of its free parameters cannot lead to a much better model–data misfit anymore. The intention is motivated by the fact that calibrating global biogeochemical ocean models is important for assessment and inter-model comparison but computationally expensive.
Birgit Gaye, Anna Böll, Joachim Segschneider, Nicole Burdanowitz, Kay-Christian Emeis, Venkitasubramani Ramaswamy, Niko Lahajnar, Andreas Lückge, and Tim Rixen
Biogeosciences, 15, 507–527, https://doi.org/10.5194/bg-15-507-2018, https://doi.org/10.5194/bg-15-507-2018, 2018
Short summary
Short summary
The Arabian Sea has one of the most severe oxygen minima of the world's oceans between about 100 and 1200 m of water depth and is therefore a major oceanic nitrogen sink. Stable nitrogen isotopic ratios in sediments record changes in oxygen concentrations and were studied for the last 25 kyr. Oxygen concentrations dropped at the end of the last glacial and became further reduced during the Holocene, probably due to the increasing age of the low-oxygen water mass.
Nadine Mengis, David P. Keller, and Andreas Oschlies
Earth Syst. Dynam., 9, 15–31, https://doi.org/10.5194/esd-9-15-2018, https://doi.org/10.5194/esd-9-15-2018, 2018
Short summary
Short summary
The Systematic Correlation Matrix Evaluation (SCoMaE) method applies statistical information to systematically select, transparent, nonredundant indicators for a comprehensive assessment of the Earth system state. We show that due to changing climate forcing, such as anthropogenic climate change, the ad hoc assessment indicators might need to be reevaluated. Within an iterative process, this method would allow us to select scientifically consistent and societally relevant assessment indicators.
Karin F. Kvale, Samar Khatiwala, Heiner Dietze, Iris Kriest, and Andreas Oschlies
Geosci. Model Dev., 10, 2425–2445, https://doi.org/10.5194/gmd-10-2425-2017, https://doi.org/10.5194/gmd-10-2425-2017, 2017
Short summary
Short summary
Computer models of ocean biology and chemistry are becoming increasingly complex, and thus more expensive, to run. One solution is to approximate the behaviour of the ocean physics and store that information outside of the model. That
offlineinformation can then be used to calculate a steady-state solution from the model's biology and chemistry, without waiting for a traditional
onlineintegration to complete. We show this offline method reproduces online results and is 100 times faster.
James C. Orr, Raymond G. Najjar, Olivier Aumont, Laurent Bopp, John L. Bullister, Gokhan Danabasoglu, Scott C. Doney, John P. Dunne, Jean-Claude Dutay, Heather Graven, Stephen M. Griffies, Jasmin G. John, Fortunat Joos, Ingeborg Levin, Keith Lindsay, Richard J. Matear, Galen A. McKinley, Anne Mouchet, Andreas Oschlies, Anastasia Romanou, Reiner Schlitzer, Alessandro Tagliabue, Toste Tanhua, and Andrew Yool
Geosci. Model Dev., 10, 2169–2199, https://doi.org/10.5194/gmd-10-2169-2017, https://doi.org/10.5194/gmd-10-2169-2017, 2017
Short summary
Short summary
The Ocean Model Intercomparison Project (OMIP) is a model comparison effort under Phase 6 of the Coupled Model Intercomparison Project (CMIP6). Its physical component is described elsewhere in this special issue. Here we describe its ocean biogeochemical component (OMIP-BGC), detailing simulation protocols and analysis diagnostics. Simulations focus on ocean carbon, other biogeochemical tracers, air-sea exchange of CO2 and related gases, and chemical tracers used to evaluate modeled circulation.
Daniela Niemeyer, Tronje P. Kemena, Katrin J. Meissner, and Andreas Oschlies
Earth Syst. Dynam., 8, 357–367, https://doi.org/10.5194/esd-8-357-2017, https://doi.org/10.5194/esd-8-357-2017, 2017
Markus Schartau, Philip Wallhead, John Hemmings, Ulrike Löptien, Iris Kriest, Shubham Krishna, Ben A. Ward, Thomas Slawig, and Andreas Oschlies
Biogeosciences, 14, 1647–1701, https://doi.org/10.5194/bg-14-1647-2017, https://doi.org/10.5194/bg-14-1647-2017, 2017
Short summary
Short summary
Plankton models have become an integral part in marine ecosystem and biogeochemical research. These models differ in complexity and in their number of parameters. How values are assigned to parameters is essential. An overview of major methodologies of parameter estimation is provided. Aspects of parameter identification in the literature are diverse. Individual findings could be better synthesized if notation and expertise of the different scientific communities would be reasonably merged.
Yonss Saranga José, Heiner Dietze, and Andreas Oschlies
Biogeosciences, 14, 1349–1364, https://doi.org/10.5194/bg-14-1349-2017, https://doi.org/10.5194/bg-14-1349-2017, 2017
Short summary
Short summary
This study aims to investigate the diverse subsurface nutrient patterns observed within anticyclonic eddies in the upwelling system off Peru. Two simulated anticyclonic eddies with opposing subsurface nitrate concentrations were analysed. The results show that diverse nutrient patterns within anticyclonic eddies are related to the presence of water mass from different origins at different depths, responding to variations in depth of the circulation strength at the edge of the eddy.
Iris Kriest, Volkmar Sauerland, Samar Khatiwala, Anand Srivastav, and Andreas Oschlies
Geosci. Model Dev., 10, 127–154, https://doi.org/10.5194/gmd-10-127-2017, https://doi.org/10.5194/gmd-10-127-2017, 2017
Short summary
Short summary
Global biogeochemical ocean models are subject to a high level of parametric uncertainty. This may be of consequence for their skill with respect to accurately describing features of the present ocean and their sensitivity to possible environmental changes. We present the first results from a framework that combines an offline biogeochemical tracer transport model with an estimation of distribution algorithm, calibrating six biogeochemical model parameters against observed oxygen and nutrients.
Fabian Reith, David P. Keller, and Andreas Oschlies
Earth Syst. Dynam., 7, 797–812, https://doi.org/10.5194/esd-7-797-2016, https://doi.org/10.5194/esd-7-797-2016, 2016
Bei Su, Markus Pahlow, and Andreas Oschlies
Biogeosciences, 13, 4985–5001, https://doi.org/10.5194/bg-13-4985-2016, https://doi.org/10.5194/bg-13-4985-2016, 2016
Short summary
Short summary
Previously identified positive feedbacks within the nitrogen cycle in the eastern tropical South Pacific (ETSP) have challenged our understanding of the observed dynamics and stability of the nitrogen inventory. We present a box model analysis of the biological and biogeochemical relations in the ETSP among nitrogen deposition, benthic denitrification and phosphate regeneration. Our results suggest dominant stabilizing feedbacks tending to keep a balanced nitrogen inventory in the ETSP.
Roland Séférian, Marion Gehlen, Laurent Bopp, Laure Resplandy, James C. Orr, Olivier Marti, John P. Dunne, James R. Christian, Scott C. Doney, Tatiana Ilyina, Keith Lindsay, Paul R. Halloran, Christoph Heinze, Joachim Segschneider, Jerry Tjiputra, Olivier Aumont, and Anastasia Romanou
Geosci. Model Dev., 9, 1827–1851, https://doi.org/10.5194/gmd-9-1827-2016, https://doi.org/10.5194/gmd-9-1827-2016, 2016
Short summary
Short summary
This paper explores how the large diversity in spin-up protocols used for ocean biogeochemistry in CMIP5 models contributed to inter-model differences in modeled fields. We show that a link between spin-up duration and skill-score metrics emerges from both individual IPSL-CM5A-LR's results and an ensemble of CMIP5 models. Our study suggests that differences in spin-up protocols constitute a source of inter-model uncertainty which would require more attention in future intercomparison exercises.
I. Kriest and A. Oschlies
Geosci. Model Dev., 8, 2929–2957, https://doi.org/10.5194/gmd-8-2929-2015, https://doi.org/10.5194/gmd-8-2929-2015, 2015
Short summary
Short summary
We use a global model of oceanic P, N, and O2 cycles to investigate consequences of uncertainties in description of organic matter sinking, remineralization, denitrification, and N2-Fixation. After all biogeochemical and physical processes have been spun-up into a dynamically consistent steady-state, particle sinking and oxidant affinities of aerobic and anaerobic remineralization determine the extent of oxygen minimum zones, global nitrogen fluxes, and the oceanic nitrogen inventory.
W. Koeve, H. Wagner, P. Kähler, and A. Oschlies
Geosci. Model Dev., 8, 2079–2094, https://doi.org/10.5194/gmd-8-2079-2015, https://doi.org/10.5194/gmd-8-2079-2015, 2015
Short summary
Short summary
The natural abundance of 14C in CO2 dissolved in seawater is often used to evaluate circulation and age in the ocean and in ocean models. We study limitations of using natural 14C to determine the time elapsed since water had contact with the atmosphere. We find that, globally, bulk 14C age is dominated by two equally important components, (1) the time component of circulation and (2) the “preformed 14C-age”. Considering preformed 14C-age is critical for an assessment of circulation in models.
L. Nickelsen, D. P. Keller, and A. Oschlies
Geosci. Model Dev., 8, 1357–1381, https://doi.org/10.5194/gmd-8-1357-2015, https://doi.org/10.5194/gmd-8-1357-2015, 2015
Short summary
Short summary
In this paper we find that including the marine cycle of the phytoplankton nutrient iron in a global climate model improves the agreement between observed and simulated nutrient concentrations in the ocean and that a better description of the source of iron from the sediment to the ocean is more important than that of iron-containing dust deposition. Finally, we find that the response of the iron cycle to climate warming affects the phytoplankton growth and nutrient cycles.
C. Le Quéré, R. Moriarty, R. M. Andrew, G. P. Peters, P. Ciais, P. Friedlingstein, S. D. Jones, S. Sitch, P. Tans, A. Arneth, T. A. Boden, L. Bopp, Y. Bozec, J. G. Canadell, L. P. Chini, F. Chevallier, C. E. Cosca, I. Harris, M. Hoppema, R. A. Houghton, J. I. House, A. K. Jain, T. Johannessen, E. Kato, R. F. Keeling, V. Kitidis, K. Klein Goldewijk, C. Koven, C. S. Landa, P. Landschützer, A. Lenton, I. D. Lima, G. Marland, J. T. Mathis, N. Metzl, Y. Nojiri, A. Olsen, T. Ono, S. Peng, W. Peters, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. E. Salisbury, U. Schuster, J. Schwinger, R. Séférian, J. Segschneider, T. Steinhoff, B. D. Stocker, A. J. Sutton, T. Takahashi, B. Tilbrook, G. R. van der Werf, N. Viovy, Y.-P. Wang, R. Wanninkhof, A. Wiltshire, and N. Zeng
Earth Syst. Sci. Data, 7, 47–85, https://doi.org/10.5194/essd-7-47-2015, https://doi.org/10.5194/essd-7-47-2015, 2015
Short summary
Short summary
Carbon dioxide (CO2) emissions from human activities (burning fossil fuels and cement production, deforestation and other land-use change) are set to rise again in 2014.
This study (updated yearly) makes an accurate assessment of anthropogenic CO2 emissions and their redistribution between the atmosphere, ocean, and terrestrial biosphere in order to better understand the global carbon cycle, support the development of climate policies, and project future climate change.
B. Su, M. Pahlow, H. Wagner, and A. Oschlies
Biogeosciences, 12, 1113–1130, https://doi.org/10.5194/bg-12-1113-2015, https://doi.org/10.5194/bg-12-1113-2015, 2015
Short summary
Short summary
A box model of the eastern tropical South Pacific oxygen minimum zone suggests that anaerobic water-column remineralization rates have to be slower than aerobic remineralization in order to explain the relatively high values of observed nitrate concentrations. Lateral oxygen supply sufficient to oxidize about one-fifth of the export production is required to prevent an anoxic deep ocean. Under these circumstances, the region can be a net source of fixed nitrogen to the surrounding ocean.
A. E. F. Prowe, M. Pahlow, S. Dutkiewicz, and A. Oschlies
Biogeosciences, 11, 3397–3407, https://doi.org/10.5194/bg-11-3397-2014, https://doi.org/10.5194/bg-11-3397-2014, 2014
C. Le Quéré, G. P. Peters, R. J. Andres, R. M. Andrew, T. A. Boden, P. Ciais, P. Friedlingstein, R. A. Houghton, G. Marland, R. Moriarty, S. Sitch, P. Tans, A. Arneth, A. Arvanitis, D. C. E. Bakker, L. Bopp, J. G. Canadell, L. P. Chini, S. C. Doney, A. Harper, I. Harris, J. I. House, A. K. Jain, S. D. Jones, E. Kato, R. F. Keeling, K. Klein Goldewijk, A. Körtzinger, C. Koven, N. Lefèvre, F. Maignan, A. Omar, T. Ono, G.-H. Park, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. Schwinger, J. Segschneider, B. D. Stocker, T. Takahashi, B. Tilbrook, S. van Heuven, N. Viovy, R. Wanninkhof, A. Wiltshire, and S. Zaehle
Earth Syst. Sci. Data, 6, 235–263, https://doi.org/10.5194/essd-6-235-2014, https://doi.org/10.5194/essd-6-235-2014, 2014
I. Kriest and A. Oschlies
Biogeosciences, 10, 8401–8422, https://doi.org/10.5194/bg-10-8401-2013, https://doi.org/10.5194/bg-10-8401-2013, 2013
O. Duteil, W. Koeve, A. Oschlies, D. Bianchi, E. Galbraith, I. Kriest, and R. Matear
Biogeosciences, 10, 7723–7738, https://doi.org/10.5194/bg-10-7723-2013, https://doi.org/10.5194/bg-10-7723-2013, 2013
C. J. Somes, A. Oschlies, and A. Schmittner
Biogeosciences, 10, 5889–5910, https://doi.org/10.5194/bg-10-5889-2013, https://doi.org/10.5194/bg-10-5889-2013, 2013
V. Cocco, F. Joos, M. Steinacher, T. L. Frölicher, L. Bopp, J. Dunne, M. Gehlen, C. Heinze, J. Orr, A. Oschlies, B. Schneider, J. Segschneider, and J. Tjiputra
Biogeosciences, 10, 1849–1868, https://doi.org/10.5194/bg-10-1849-2013, https://doi.org/10.5194/bg-10-1849-2013, 2013
F. Joos, R. Roth, J. S. Fuglestvedt, G. P. Peters, I. G. Enting, W. von Bloh, V. Brovkin, E. J. Burke, M. Eby, N. R. Edwards, T. Friedrich, T. L. Frölicher, P. R. Halloran, P. B. Holden, C. Jones, T. Kleinen, F. T. Mackenzie, K. Matsumoto, M. Meinshausen, G.-K. Plattner, A. Reisinger, J. Segschneider, G. Shaffer, M. Steinacher, K. Strassmann, K. Tanaka, A. Timmermann, and A. J. Weaver
Atmos. Chem. Phys., 13, 2793–2825, https://doi.org/10.5194/acp-13-2793-2013, https://doi.org/10.5194/acp-13-2793-2013, 2013
A. Landolfi, H. Dietze, W. Koeve, and A. Oschlies
Biogeosciences, 10, 1351–1363, https://doi.org/10.5194/bg-10-1351-2013, https://doi.org/10.5194/bg-10-1351-2013, 2013
M. El Jarbi, J. Rückelt, T. Slawig, and A. Oschlies
Biogeosciences, 10, 1169–1182, https://doi.org/10.5194/bg-10-1169-2013, https://doi.org/10.5194/bg-10-1169-2013, 2013
J. Segschneider, A. Beitsch, C. Timmreck, V. Brovkin, T. Ilyina, J. Jungclaus, S. J. Lorenz, K. D. Six, and D. Zanchettin
Biogeosciences, 10, 669–687, https://doi.org/10.5194/bg-10-669-2013, https://doi.org/10.5194/bg-10-669-2013, 2013
L. M. Zamora, A. Oschlies, H. W. Bange, K. B. Huebert, J. D. Craig, A. Kock, and C. R. Löscher
Biogeosciences, 9, 5007–5022, https://doi.org/10.5194/bg-9-5007-2012, https://doi.org/10.5194/bg-9-5007-2012, 2012
Related subject area
Biogeosciences
CoupModel (v6.0): an ecosystem model for coupled phosphorus, nitrogen, and carbon dynamics – evaluated against empirical data from a climatic and fertility gradient in Sweden
Improving the representation of cropland sites in the Community Land Model (CLM) version 5.0
Numerical model to simulate long-term soil organic carbon and ground ice budget with permafrost and ice sheets (SOC-ICE-v1.0)
Calibrating soybean parameters in JULES 5.0 from the US-Ne2/3 FLUXNET sites and the SoyFACE-O3 experiment
Modeling long-term fire impact on ecosystem characteristics and surface energy using a process-based vegetation–fire model SSiB4/TRIFFID-Fire v1.0
Energy, water and carbon exchanges in managed forest ecosystems: description, sensitivity analysis and evaluation of the INRAE GO+ model, version 3.0
Improving Yasso15 soil carbon model estimates with ensemble adjustment Kalman filter state data assimilation
Oceanic and atmospheric methane cycling in the cGENIE Earth system model – release v0.9.14
Modeling the impacts of diffuse light fraction on photosynthesis in ORCHIDEE (v5453) land surface model
Description and evaluation of the process-based forest model 4C v2.2 at four European forest sites
A multi-isotope model for simulating soil organic carbon cycling in eroding landscapes (WATEM_C v1.0)
One-dimensional models of radiation transfer in heterogeneous canopies: a review, re-evaluation, and improved model
An improved mechanistic model for ammonia volatilization in Earth system models: Flow of Agricultural Nitrogen version 2 (FANv2)
Stoichiometrically coupled carbon and nitrogen cycling in the MIcrobial-MIneral Carbon Stabilization model version 1.0 (MIMICS-CN v1.0)
Short-term forecasting of regional biospheric CO2 fluxes in Europe using a light-use-efficiency model (VPRM, MPI-BGC version 1.2)
FLiES-SIF version 1.0: three-dimensional radiative transfer model for estimating solar induced fluorescence
The importance of management information and soil moisture representation for simulating tillage effects on N2O emissions in LPJmL5.0-tillage
Evaluation of CH4MODwetland and Terrestrial Ecosystem Model (TEM) used to estimate global CH4 emissions from natural wetlands
Simulating stable carbon isotopes in the ocean component of the FAMOUS general circulation model with MOSES1 (XOAVI)
Quantitative assessment of fire and vegetation properties in simulations with fire-enabled vegetation models from the Fire Model Intercomparison Project
Marine biogeochemical cycling and oceanic CO2 uptake simulated by the NUIST Earth System Model version 3 (NESM v3)
CLASSIC v1.0: the open-source community successor to the Canadian Land Surface Scheme (CLASS) and the Canadian Terrestrial Ecosystem Model (CTEM) – Part 1: Model framework and site-level performance
Potential yield simulated by Global Gridded Crop Models: a process-based emulator to explain their differences
Integrated Modeling of Photosynthesis and Transfer of Energy, Mass and Momentum in the Soil-Plant-Atmosphere Continuum System
Rapid development of fast and flexible environmental models: The Mobius framework v1.0
HR3DHG version 1: modeling the spatiotemporal dynamics of mercury in the Augusta Bay (southern Italy)
BPOP-v1 model: exploring the impact of changes in the biological pump on the shelf sea and ocean nutrient and redox state
P-model v1.0: an optimality-based light use efficiency model for simulating ecosystem gross primary production
HETEROFOR 1.0: a spatially explicit model for exploring the response of structurally complex forests to uncertain future conditions – Part 2: Phenology and water cycle
Dynamic upscaling of decomposition kinetics for carbon cycling models
CE-DYNAM (v1): a spatially explicit process-based carbon erosion scheme for use in Earth system models
A coupled pelagic–benthic–sympagic biogeochemical model for the Bering Sea: documentation and validation of the BESTNPZ model (v2019.08.23) within a high-resolution regional ocean model
FORests and HYdrology under Climate Change in Switzerland v1.0: a spatially distributed model combining hydrology and forest dynamics
ORCHIDEE MICT-LEAK (r5459), a global model for the production, transport, and transformation of dissolved organic carbon from Arctic permafrost regions – Part 2: Model evaluation over the Lena River basin
GLOBAL-FATE (version 1.0.0): A geographical information system (GIS)-based model for assessing contaminants fate in the global river network
A comparative assessment of the uncertainties of global surface ocean CO2 estimates using a machine-learning ensemble (CSIR-ML6 version 2019a) – have we hit the wall?
Improving the LPJmL4-SPITFIRE vegetation–fire model for South America using satellite data
Accounting for carbon and nitrogen interactions in the global terrestrial ecosystem model ORCHIDEE (trunk version, rev 4999): multi-scale evaluation of gross primary production
A new model of the coupled carbon, nitrogen, and phosphorus cycles in the terrestrial biosphere (QUINCY v1.0; revision 1996)
Modelling biomass burning emissions and the effect of spatial resolution: a case study for Africa based on the Global Fire Emissions Database (GFED)
A lattice-automaton bioturbation simulator with coupled physics, chemistry, and biology in marine sediments (eLABS v0.2)
The biophysics, ecology, and biogeochemistry of functionally diverse, vertically and horizontally heterogeneous ecosystems: the Ecosystem Demography model, version 2.2 – Part 1: Model description
The biophysics, ecology, and biogeochemistry of functionally diverse, vertically and horizontally heterogeneous ecosystems: the Ecosystem Demography model, version 2.2 – Part 2: Model evaluation for tropical South America
Identification of key parameters controlling demographically structured vegetation dynamics in a land surface model: CLM4.5(FATES)
Parameter calibration and stomatal conductance formulation comparison for boreal forests with adaptive population importance sampler in the land surface model JSBACH
Evaluation of leaf-level optical properties employed in land surface models
ORCHIDEE MICT-LEAK (r5459), a global model for the production, transport, and transformation of dissolved organic carbon from Arctic permafrost regions – Part 1: Rationale, model description, and simulation protocol
Modelling northern peatland area and carbon dynamics since the Holocene with the ORCHIDEE-PEAT land surface model (SVN r5488)
Simulating the effect of tillage practices with the global ecosystem model LPJmL (version 5.0-tillage)
Description and validation of an intermediate complexity model for ecosystem photosynthesis and evapotranspiration: ACM-GPP-ETv1
Hongxing He, Per-Erik Jansson, and Annemieke I. Gärdenäs
Geosci. Model Dev., 14, 735–761, https://doi.org/10.5194/gmd-14-735-2021, https://doi.org/10.5194/gmd-14-735-2021, 2021
Short summary
Short summary
This study presents the integration of the phosphorus (P) cycle into CoupModel (v6.0, Coup-CNP). The extended Coup-CNP, which explicitly considers the symbiosis between soil microbes and plant roots, enables simulations of coupled C, N, and P dynamics for terrestrial ecosystems. Simulations from the new Coup-CNP model provide strong evidence that P fluxes need to be further considered in studies of how ecosystems and C turnover react to climate change.
Theresa Boas, Heye Bogena, Thomas Grünwald, Bernard Heinesch, Dongryeol Ryu, Marius Schmidt, Harry Vereecken, Andrew Western, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 14, 573–601, https://doi.org/10.5194/gmd-14-573-2021, https://doi.org/10.5194/gmd-14-573-2021, 2021
Short summary
Short summary
In this study we were able to significantly improve CLM5 model performance for European cropland sites by adding a winter wheat representation, specific plant parameterizations for important cash crops, and a cover-cropping and crop rotation subroutine to its crop module. Our modifications should be applied in future studies of CLM5 to improve regional yield predictions and to better understand large-scale impacts of agricultural management on carbon, water, and energy fluxes.
Kazuyuki Saito, Hirokazu Machiya, Go Iwahana, Tokuta Yokohata, and Hiroshi Ohno
Geosci. Model Dev., 14, 521–542, https://doi.org/10.5194/gmd-14-521-2021, https://doi.org/10.5194/gmd-14-521-2021, 2021
Short summary
Short summary
Soil organic carbon (SOC) and ground ice (ICE) are essential but under-documented information to assess the circum-Arctic permafrost degradation impacts. A simple numerical model of essential SOC and ICE dynamics, developed and integrated north of 50° N for 125,000 years since the last interglacial, reconstructed the history and 1° distribution of SOC and ICE consistent with current knowledge, together with successful demonstration of climatic and topographical controls on SOC evolution.
Felix Leung, Karina Williams, Stephen Sitch, Amos P. K. Tai, Andy Wiltshire, Jemma Gornall, Elizabeth A. Ainsworth, Timothy Arkebauer, and David Scoby
Geosci. Model Dev., 13, 6201–6213, https://doi.org/10.5194/gmd-13-6201-2020, https://doi.org/10.5194/gmd-13-6201-2020, 2020
Short summary
Short summary
Ground-level ozone (O3) is detrimental to plant productivity and crop yield. Currently, the Joint UK Land Environment Simulator (JULES) includes a representation of crops (JULES-crop). The parameters for O3 damage in soybean in JULES-crop were calibrated against photosynthesis measurements from the Soybean Free Air Concentration Enrichment (SoyFACE). The result shows good performance for yield, and it helps contribute to understanding of the impacts of climate and air pollution on food security.
Huilin Huang, Yongkang Xue, Fang Li, and Ye Liu
Geosci. Model Dev., 13, 6029–6050, https://doi.org/10.5194/gmd-13-6029-2020, https://doi.org/10.5194/gmd-13-6029-2020, 2020
Short summary
Short summary
We developed a fire-coupled dynamic vegetation model that captures the spatial distribution, temporal variability, and especially the seasonal variability of fire regimes. The fire model is applied to assess the long-term fire impact on ecosystems and surface energy. We find that fire is an important determinant of the structure and function of the tropical savanna. By changing the vegetation composition and ecosystem characteristics, fire significantly alters surface energy balance.
Virginie Moreaux, Simon Martel, Alexandre Bosc, Delphine Picart, David Achat, Christophe Moisy, Raphael Aussenac, Christophe Chipeaux, Jean-Marc Bonnefond, Soisick Figuères, Pierre Trichet, Rémi Vezy, Vincent Badeau, Bernard Longdoz, André Granier, Olivier Roupsard, Manuel Nicolas, Kim Pilegaard, Giorgio Matteucci, Claudy Jolivet, Andrew T. Black, Olivier Picard, and Denis Loustau
Geosci. Model Dev., 13, 5973–6009, https://doi.org/10.5194/gmd-13-5973-2020, https://doi.org/10.5194/gmd-13-5973-2020, 2020
Short summary
Short summary
The model GO+ describes the functioning of managed forests based upon biophysical and biogeochemical processes. It accounts for the impacts of forest operations on energy, water and carbon exchanges within the soil–vegetation–atmosphere continuum. It includes versatile descriptions of management operations. Its sensitivity and uncertainty are detailed and predictions are compared with observations about mass and energy exchanges, hydrological data, and tree growth variables from different sites.
Toni Viskari, Maisa Laine, Liisa Kulmala, Jarmo Mäkelä, Istem Fer, and Jari Liski
Geosci. Model Dev., 13, 5959–5971, https://doi.org/10.5194/gmd-13-5959-2020, https://doi.org/10.5194/gmd-13-5959-2020, 2020
Short summary
Short summary
The research here established whether a Bayesian statistical method called state data assimilation could be used to improve soil organic carbon (SOC) forecasts. Our test case was a fallow experiment where SOC content was measured over several decades from a plot where all vegetation was removed. Our results showed that state data assimilation improved projections and allowed for the detailed model state be updated with coarse total carbon measurements.
Christopher T. Reinhard, Stephanie L. Olson, Sandra Kirtland Turner, Cecily Pälike, Yoshiki Kanzaki, and Andy Ridgwell
Geosci. Model Dev., 13, 5687–5706, https://doi.org/10.5194/gmd-13-5687-2020, https://doi.org/10.5194/gmd-13-5687-2020, 2020
Short summary
Short summary
We provide documentation and testing of new developments for the oceanic and atmospheric methane cycles in the cGENIE Earth system model. The model is designed to explore Earth's methane cycle across a wide range of timescales and scenarios, in particular assessing the mean climate state and climate perturbations in Earth's deep past. We further document the impact of atmospheric oxygen levels and ocean chemistry on fluxes of methane to the atmosphere from the ocean biosphere.
Yuan Zhang, Ana Bastos, Fabienne Maignan, Daniel Goll, Olivier Boucher, Laurent Li, Alessandro Cescatti, Nicolas Vuichard, Xiuzhi Chen, Christof Ammann, M. Altaf Arain, T. Andrew Black, Bogdan Chojnicki, Tomomichi Kato, Ivan Mammarella, Leonardo Montagnani, Olivier Roupsard, Maria J. Sanz, Lukas Siebicke, Marek Urbaniak, Francesco Primo Vaccari, Georg Wohlfahrt, Will Woodgate, and Philippe Ciais
Geosci. Model Dev., 13, 5401–5423, https://doi.org/10.5194/gmd-13-5401-2020, https://doi.org/10.5194/gmd-13-5401-2020, 2020
Short summary
Short summary
We improved the ORCHIDEE LSM by distinguishing diffuse and direct light in canopy and evaluated the new model with observations from 159 sites. Compared with the old model, the new model has better sunny GPP and reproduced the diffuse light fertilization effect observed at flux sites. Our simulations also indicate different mechanisms causing the observed GPP enhancement under cloudy conditions at different times. The new model has the potential to study large-scale impacts of aerosol changes.
Petra Lasch-Born, Felicitas Suckow, Christopher P. O. Reyer, Martin Gutsch, Chris Kollas, Franz-Werner Badeck, Harald K. M. Bugmann, Rüdiger Grote, Cornelia Fürstenau, Marcus Lindner, and Jörg Schaber
Geosci. Model Dev., 13, 5311–5343, https://doi.org/10.5194/gmd-13-5311-2020, https://doi.org/10.5194/gmd-13-5311-2020, 2020
Short summary
Short summary
The process-based model 4C has been developed to study climate impacts on forests and is now freely available as an open-source tool. This paper provides a comprehensive description of the 4C version (v2.2) for scientific users of the model and presents an evaluation of 4C. The evaluation focused on forest growth, carbon water, and heat fluxes. We conclude that 4C is widely applicable, reliable, and ready to be released to the scientific community to use and further develop the model.
Zhengang Wang, Jianxiu Qiu, and Kristof Van Oost
Geosci. Model Dev., 13, 4977–4992, https://doi.org/10.5194/gmd-13-4977-2020, https://doi.org/10.5194/gmd-13-4977-2020, 2020
Short summary
Short summary
This study developed a spatially distributed carbon cycling model applicable in an eroding landscape. It includes all three carbon isotopes so that it is able to represent the carbon isotopic compositions. The model is able to represent the observations that eroding area is enriched in 13C and depleted of 14C compared to depositional area. Our simulations show that the spatial variability of carbon isotopic properties in an eroding landscape is mainly caused by the soil redistribution.
Brian N. Bailey, María A. Ponce de León, and E. Scott Krayenhoff
Geosci. Model Dev., 13, 4789–4808, https://doi.org/10.5194/gmd-13-4789-2020, https://doi.org/10.5194/gmd-13-4789-2020, 2020
Short summary
Short summary
Numerous models of plant radiation interception based on a range of assumptions are available in the literature, but the importance of each assumption is not well understood. In this work, we evaluate several assumptions common in simple models of radiation interception in canopies with widely spaced plants by comparing against a detailed 3-D model. This yielded a simple model based on readily measurable parameters that could accurately predict interception for a wide range of architectures.
Julius Vira, Peter Hess, Jeff Melkonian, and William R. Wieder
Geosci. Model Dev., 13, 4459–4490, https://doi.org/10.5194/gmd-13-4459-2020, https://doi.org/10.5194/gmd-13-4459-2020, 2020
Short summary
Short summary
Mostly emitted by the agricultural sector, ammonia has an important role in atmospheric chemistry. We developed a model to simulate how ammonia emissions respond to changes in temperature and soil moisture, and we evaluated agricultural ammonia emissions globally. The simulated emissions agree with earlier estimates over many regions, but the results highlight the variability of ammonia emissions and suggest that emissions in warm climates may be higher than previously thought.
Emily Kyker-Snowman, William R. Wieder, Serita D. Frey, and A. Stuart Grandy
Geosci. Model Dev., 13, 4413–4434, https://doi.org/10.5194/gmd-13-4413-2020, https://doi.org/10.5194/gmd-13-4413-2020, 2020
Short summary
Short summary
Microbes drive carbon (C) and nitrogen (N) transformations in soil, and soil models have started to include explicit microbial physiology and functioning to try to reduce uncertainty in soil–climate feedbacks. Here, we add N cycling to a microbially explicit soil C model and reproduce C and N dynamics in soil during litter decomposition across a range of sites. We discuss model-generated hypotheses about soil C and N cycling and highlight the need for landscape-scale model evaluation data.
Jinxuan Chen, Christoph Gerbig, Julia Marshall, and Kai Uwe Totsche
Geosci. Model Dev., 13, 4091–4106, https://doi.org/10.5194/gmd-13-4091-2020, https://doi.org/10.5194/gmd-13-4091-2020, 2020
Short summary
Short summary
One of the essential challenge for atmospheric CO2 forecasting is predicting CO2 flux variation on synoptic timescale. For CAMS CO2 forecast, a process-based vegetation model is used.
In this research we evaluate another type of model (i.e., the light-use-efficiency model VPRM), which is a data-driven approach and thus ideal for realistic estimation, on its ability of flux prediction. Errors from different sources are assessed, and overall the model is capable of CO2 flux prediction.
Yuma Sakai, Hideki Kobayashi, and Tomomichi Kato
Geosci. Model Dev., 13, 4041–4066, https://doi.org/10.5194/gmd-13-4041-2020, https://doi.org/10.5194/gmd-13-4041-2020, 2020
Short summary
Short summary
Chlorophyll fluorescence is one of the energy release pathways of excess incident light in the photosynthetic process. The canopy-scale Sun-induced chlorophyll fluorescence (SIF), which potentially provides a direct pathway to link leaf-level photosynthesis to global GPP, can be observed from satellites. We develop the three-dimensional Monte Carlo plant canopy radiative transfer model to understand the biological and physical mechanisms behind SIF emission from complex forest canopies.
Femke Lutz, Stephen Del Grosso, Stephen Ogle, Stephen Williams, Sara Minoli, Susanne Rolinski, Jens Heinke, Jetse J. Stoorvogel, and Christoph Müller
Geosci. Model Dev., 13, 3905–3923, https://doi.org/10.5194/gmd-13-3905-2020, https://doi.org/10.5194/gmd-13-3905-2020, 2020
Short summary
Short summary
Previous findings have shown deviations between the LPJmL5.0-tillage model and results from meta-analyses on global estimates of tillage effects on N2O emissions. By comparing model results with observational data of four experimental sites and outputs from field-scale DayCent model simulations, we show that advancing information on agricultural management, as well as the representation of soil moisture dynamics, improves LPJmL5.0-tillage and the estimates of tillage effects on N2O emissions.
Tingting Li, Yanyu Lu, Lingfei Yu, Wenjuan Sun, Qing Zhang, Wen Zhang, Guocheng Wang, Zhangcai Qin, Lijun Yu, Hailing Li, and Ran Zhang
Geosci. Model Dev., 13, 3769–3788, https://doi.org/10.5194/gmd-13-3769-2020, https://doi.org/10.5194/gmd-13-3769-2020, 2020
Short summary
Short summary
Reliable models are required to estimate global wetland CH4 emissions, which are the largest and most uncertain source of atmospheric CH4. This paper evaluated CH4MODwetland and TEM models against CH4 measurements from different continents and wetland types. Based on best-model performance, we estimated 117–125 Tg yr−1 of global CH4 emissions from wetlands for the period 2000–2010. Efforts should be made to reduce estimate uncertainties for different wetland types and regions.
Jennifer E. Dentith, Ruza F. Ivanovic, Lauren J. Gregoire, Julia C. Tindall, and Laura F. Robinson
Geosci. Model Dev., 13, 3529–3552, https://doi.org/10.5194/gmd-13-3529-2020, https://doi.org/10.5194/gmd-13-3529-2020, 2020
Short summary
Short summary
We have added a new tracer (13C) into the ocean of the FAMOUS climate model to study large-scale circulation and the marine carbon cycle. The model captures the large-scale spatial pattern of observations but the simulated values are consistently higher than observed. In the first instance, our new tracer is therefore useful for recalibrating the physical and biogeochemical components of the model.
Stijn Hantson, Douglas I. Kelley, Almut Arneth, Sandy P. Harrison, Sally Archibald, Dominique Bachelet, Matthew Forrest, Thomas Hickler, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Lars Nieradzik, Sam S. Rabin, I. Colin Prentice, Tim Sheehan, Stephen Sitch, Lina Teckentrup, Apostolos Voulgarakis, and Chao Yue
Geosci. Model Dev., 13, 3299–3318, https://doi.org/10.5194/gmd-13-3299-2020, https://doi.org/10.5194/gmd-13-3299-2020, 2020
Short summary
Short summary
Global fire–vegetation models are widely used, but there has been limited evaluation of how well they represent various aspects of fire regimes. Here we perform a systematic evaluation of simulations made by nine FireMIP models in order to quantify their ability to reproduce a range of fire and vegetation benchmarks. While some FireMIP models are better at representing certain aspects of the fire regime, no model clearly outperforms all other models across the full range of variables assessed.
Yifei Dai, Long Cao, and Bin Wang
Geosci. Model Dev., 13, 3119–3144, https://doi.org/10.5194/gmd-13-3119-2020, https://doi.org/10.5194/gmd-13-3119-2020, 2020
Short summary
Short summary
NESM v3 is one of the CMIP6 registered Earth system models. We evaluate its ocean carbon cycle component and present its present-day and future oceanic CO2 uptake based on the CMIP6 historical and SSP5–8.5 scenarios. We hope that this paper can serve as a documentation of the marine biogeochemical cycle in NESM v3. Also, the model defects found and their underlying causes analyzed in this paper could help users and further model development.
Joe R. Melton, Vivek K. Arora, Eduard Wisernig-Cojoc, Christian Seiler, Matthew Fortier, Ed Chan, and Lina Teckentrup
Geosci. Model Dev., 13, 2825–2850, https://doi.org/10.5194/gmd-13-2825-2020, https://doi.org/10.5194/gmd-13-2825-2020, 2020
Short summary
Short summary
We transitioned the CLASS-CTEM land surface model to an open-source community model format by modernizing the code base to make the model easier to use and understand, providing a complete software environment to run the model within, developing a benchmarking suite for model evaluation, and creating an infrastructure to support community involvement. The new model, the Canadian Land Surface Scheme including Biogeochemical Cycles (CLASSIC), is now available for the community to use and develop.
Bruno Ringeval, Christoph Müller, Thomas A.M. Pugh, Nathaniel D. Mueller, Philippe Ciais, Christian Folberth, Wenfeng Liu, Philippe Debaeke, and Sylvain Pellerin
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-113, https://doi.org/10.5194/gmd-2020-113, 2020
Revised manuscript accepted for GMD
Short summary
Short summary
We assess how and why Global Gridded Crop Models (GGCMs) differ in their simulation of potential yield. We build an emulator of GGCMs based on generic formalism, and fit its parameters against aboveground biomass and yield at harvest simulated by 8 GGCMs. Despite huge differences between GGCMs, we show that the calibration of few key parameters allows the emulator to reproduce the GGCM simulations. Our simple but mechanistic model would help to improve the global simulation of potential yield.
Yunfei Wang, Yijian Zeng, Lianyu Yu, Peiqi Yang, Christiaan Van de Tol, Huanjie Cai, and Zhongbo Su
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-85, https://doi.org/10.5194/gmd-2020-85, 2020
Revised manuscript accepted for GMD
Short summary
Short summary
This study integrates photosynthesis and transfer of energy, mass, and momentum in the soil-plant-atmosphere continuum system, via a simplified 1D root growth model. The results indicated that the simulation of land surface fluxes was significantly improved due to considering the root water uptake, especially when vegetation is experiencing severe water stress. This finding highlights the importance of enhanced soil heat and moisture transfer on simulating ecosystem functioning.
Magnus Dahler Norling, Leah Amber Jackson-Blake, José-Luis Guerrero Calidonio, and James Edward Sample
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-26, https://doi.org/10.5194/gmd-2020-26, 2020
Revised manuscript accepted for GMD
Short summary
Short summary
In order for researchers to more quickly prototype and build models of natural systems we have created the Mobius framework. Such models can for instance be used to ask questions about what the impacts of land use changes are to water quality in a river or lake, or the response of biological systems to climate change etc. The Mobius framework makes it quick to build models that run fast, which enables the user to explore many different scenarios and model formulations.
Giovanni Denaro, Daniela Salvagio Manta, Alessandro Borri, Maria Bonsignore, Davide Valenti, Enza Quinci, Andrea Cucco, Bernardo Spagnolo, Mario Sprovieri, and Andrea De Gaetano
Geosci. Model Dev., 13, 2073–2093, https://doi.org/10.5194/gmd-13-2073-2020, https://doi.org/10.5194/gmd-13-2073-2020, 2020
Short summary
Short summary
The HR3DHG (high-resolution 3D mercury model) investigates the spatiotemporal behavior, in seawater and marine sediments, of three mercury species (elemental, inorganic, and organic mercury) in a highly polluted marine environment (Augusta Bay, southern Italy). The model shows fair agreement with the experimental data collected during six different oceanographic cruises and can possibly be used for a detailed exploration of the effects of climate change on mercury distribution.
Elisa Lovecchio and Timothy M. Lenton
Geosci. Model Dev., 13, 1865–1883, https://doi.org/10.5194/gmd-13-1865-2020, https://doi.org/10.5194/gmd-13-1865-2020, 2020
Short summary
Short summary
We present here the newly developed BPOP box model. BPOP is aimed at studying the impact of large-scale changes in the biological pump, i.e. the cycle of production, export and remineralization of the marine organic matter, on the nutrient and oxygen concentrations in the shelf and open ocean. This model has been developed to investigate the global consequences of the evolution of larger and heavier phytoplankton cells but can be applied to a variety of past and future case studies.
Benjamin D. Stocker, Han Wang, Nicholas G. Smith, Sandy P. Harrison, Trevor F. Keenan, David Sandoval, Tyler Davis, and I. Colin Prentice
Geosci. Model Dev., 13, 1545–1581, https://doi.org/10.5194/gmd-13-1545-2020, https://doi.org/10.5194/gmd-13-1545-2020, 2020
Short summary
Short summary
Estimating terrestrial photosynthesis relies on satellite data of vegetation cover and models simulating the efficiency by which light absorbed by vegetation is used for CO2 assimilation. This paper presents the P-model, a light use efficiency model derived from a carbon–water optimality principle, and evaluates its predictions of ecosystem-level photosynthesis against globally distributed observations. The model is implemented and openly accessible as an R package (rpmodel).
Louis de Wergifosse, Frédéric André, Nicolas Beudez, François de Coligny, Hugues Goosse, François Jonard, Quentin Ponette, Hugues Titeux, Caroline Vincke, and Mathieu Jonard
Geosci. Model Dev., 13, 1459–1498, https://doi.org/10.5194/gmd-13-1459-2020, https://doi.org/10.5194/gmd-13-1459-2020, 2020
Short summary
Short summary
Given their key role in the simulation of climate impacts on tree growth, phenological and water balance processes must be integrated in models simulating forest dynamics under a changing environment. Here, we describe these processes integrated in HETEROFOR, a model accounting simultaneously for the functional, structural and spatial complexity to explore the forest response to forestry practices. The model evaluation using phenological and soil water content observations is quite promising.
Arjun Chakrawal, Anke M. Herrmann, John Koestel, Jerker Jarsjö, Naoise Nunan, Thomas Kätterer, and Stefano Manzoni
Geosci. Model Dev., 13, 1399–1429, https://doi.org/10.5194/gmd-13-1399-2020, https://doi.org/10.5194/gmd-13-1399-2020, 2020
Short summary
Short summary
Soils are heterogeneous, which results in a nonuniform spatial distribution of substrates and the microorganisms feeding on them. Our results show that the variability in the spatial distribution of substrates and microorganisms at the pore scale is crucial because it affects how fast substrates are used by microorganisms and thus the decomposition rate observed at the soil core scale. This work provides a methodology to include microscale heterogeneity in soil carbon cycling models.
Victoria Naipal, Ronny Lauerwald, Philippe Ciais, Bertrand Guenet, and Yilong Wang
Geosci. Model Dev., 13, 1201–1222, https://doi.org/10.5194/gmd-13-1201-2020, https://doi.org/10.5194/gmd-13-1201-2020, 2020
Short summary
Short summary
In this study we present the Carbon Erosion DYNAMics model (CE-DYNAM) that links sediment dynamics resulting from water erosion with the soil carbon cycle along a cascade of hillslopes, floodplains, and rivers. The model can simulate the removal of soil and carbon from eroding areas and their destination at regional scale. We calibrated and validated the model for the Rhine catchment, and we show that soil erosion is a potential large net carbon sink over the period 1850–2005.
Kelly Kearney, Albert Hermann, Wei Cheng, Ivonne Ortiz, and Kerim Aydin
Geosci. Model Dev., 13, 597–650, https://doi.org/10.5194/gmd-13-597-2020, https://doi.org/10.5194/gmd-13-597-2020, 2020
Short summary
Short summary
We describe an ecosystem model for the Bering Sea. Biological components in the Bering Sea can be found in the water column, on and within the bottom sediments, and within the porous lower layer of seasonal sea ice. This model simulates the exchange of material between nutrients and plankton within all three environments. Here, we thoroughly document the model and assess its skill in capturing key biophysical features across the Bering Sea.
Matthias J. R. Speich, Massimiliano Zappa, Marc Scherstjanoi, and Heike Lischke
Geosci. Model Dev., 13, 537–564, https://doi.org/10.5194/gmd-13-537-2020, https://doi.org/10.5194/gmd-13-537-2020, 2020
Short summary
Short summary
Climate change is expected to substantially affect natural processes, and simulation models are a valuable tool to anticipate these changes. In this study, we combine two existing models that each describe one aspect of the environment: forest dynamics and the terrestrial water cycle. The coupled model better described observed patterns in vegetation structure. We also found that including the effect of water availability on tree height and rooting depth improved the model.
Simon P. K. Bowring, Ronny Lauerwald, Bertrand Guenet, Dan Zhu, Matthieu Guimberteau, Pierre Regnier, Ardalan Tootchi, Agnès Ducharne, and Philippe Ciais
Geosci. Model Dev., 13, 507–520, https://doi.org/10.5194/gmd-13-507-2020, https://doi.org/10.5194/gmd-13-507-2020, 2020
Short summary
Short summary
In this second part of the study, we performed simulations of the carbon and water budget of the Lena catchment with the land surface model ORCHIDEE MICT-LEAK, enabled to simulate dissolved organic carbon (DOC) production in soils and its transport and fate in high-latitude inland waters. We compare simulations using this model to existing data sources to show that it is capable of reproducing dissolved carbon fluxes of potentially great importance for the future of the global permafrost.
Carme Font, Francesco Bregoli, Vicenç Acuña, Sergi Sabater, and Rafael Marcé
Geosci. Model Dev., 12, 5213–5228, https://doi.org/10.5194/gmd-12-5213-2019, https://doi.org/10.5194/gmd-12-5213-2019, 2019
Short summary
Short summary
GLOBAL-FATE is an open-source, multiplatform, and flexible model that simulates the fate of pharmaceutical-like compounds in the global river network. The model considers the consumption of pharmaceuticals by humans, differentiates between pharmaceutical load treated in wastewater treatment plants from that directly delivered to streams and rivers, and integrates lakes and reservoirs in calculations. GLOBAL-FATE is a powerful tool for pollutant impact studies at the global scale.
Luke Gregor, Alice D. Lebehot, Schalk Kok, and Pedro M. Scheel Monteiro
Geosci. Model Dev., 12, 5113–5136, https://doi.org/10.5194/gmd-12-5113-2019, https://doi.org/10.5194/gmd-12-5113-2019, 2019
Short summary
Short summary
The ocean plays a vital role in mitigating climate change by taking up atmospheric carbon dioxide (CO2). Historically sparse ship-based measurements of surface ocean CO2 make direct estimates of CO2 exchange changes unreliable. We introduce a machine-learning ensemble approach to fill these observational gaps. Our method performs incrementally better relative to past methods, leading to our hypothesis that we are perhaps reaching the limitation of machine-learning algorithms' capability.
Markus Drüke, Matthias Forkel, Werner von Bloh, Boris Sakschewski, Manoel Cardoso, Mercedes Bustamante, Jürgen Kurths, and Kirsten Thonicke
Geosci. Model Dev., 12, 5029–5054, https://doi.org/10.5194/gmd-12-5029-2019, https://doi.org/10.5194/gmd-12-5029-2019, 2019
Short summary
Short summary
This work shows the successful application of a systematic model–data integration setup, as well as the implementation of a new fire danger formulation, in order to optimize a process-based fire-enabled dynamic global vegetation model. We have demonstrated a major improvement in the fire representation within LPJmL4-SPITFIRE in terms of the spatial pattern and the interannual variability of burned area in South America as well as in the modelling of biomass and the distribution of plant types.
Nicolas Vuichard, Palmira Messina, Sebastiaan Luyssaert, Bertrand Guenet, Sönke Zaehle, Josefine Ghattas, Vladislav Bastrikov, and Philippe Peylin
Geosci. Model Dev., 12, 4751–4779, https://doi.org/10.5194/gmd-12-4751-2019, https://doi.org/10.5194/gmd-12-4751-2019, 2019
Short summary
Short summary
In this research, we present a new version of the global terrestrial ecosystem model ORCHIDEE in which carbon and nitrogen cycles are coupled. We evaluate its skills at simulating primary production at 78 sites and at a global scale. Based on a set of additional simulations in which carbon and nitrogen cycles are coupled and uncoupled, we show that the functional responses of the model with carbon–nitrogen interactions better agree with our current understanding of photosynthesis.
Tea Thum, Silvia Caldararu, Jan Engel, Melanie Kern, Marleen Pallandt, Reiner Schnur, Lin Yu, and Sönke Zaehle
Geosci. Model Dev., 12, 4781–4802, https://doi.org/10.5194/gmd-12-4781-2019, https://doi.org/10.5194/gmd-12-4781-2019, 2019
Short summary
Short summary
To predict the response of the vegetation to climate change, we need global models that describe the relevant processes taking place in the vegetation. Recently, we have obtained more in-depth understanding of vegetation processes and the role of nutrients in the biogeochemical cycles. We have developed a new global vegetation model that includes carbon, water, nitrogen, and phosphorus cycles. We show that the model is successful in evaluation against a wide range of observations.
Dave van Wees and Guido R. van der Werf
Geosci. Model Dev., 12, 4681–4703, https://doi.org/10.5194/gmd-12-4681-2019, https://doi.org/10.5194/gmd-12-4681-2019, 2019
Short summary
Short summary
For this paper, a novel high spatial-resolution fire emission model based on the Global Fire Emissions Database (GFED) modelling framework was developed and compared to a coarser-resolution version of the same model. Our findings highlight the importance of fine spatial resolution when modelling global-scale fire emissions, especially considering the comparison of model pixels to individual field measurements and the model representation of heterogeneity in the landscape.
Yoshiki Kanzaki, Bernard P. Boudreau, Sandra Kirtland Turner, and Andy Ridgwell
Geosci. Model Dev., 12, 4469–4496, https://doi.org/10.5194/gmd-12-4469-2019, https://doi.org/10.5194/gmd-12-4469-2019, 2019
Short summary
Short summary
This paper provides eLABS, an extension of the lattice-automaton bioturbation simulator LABS. In our new model, the benthic animal behavior interacts and changes dynamically with oxygen and organic matter concentrations and the water flows caused by benthic animals themselves, in a 2-D marine-sediment grid. The model can address the mechanisms behind empirical observations of bioturbation based on the interactions between physical, chemical and biological aspects of marine sediment.
Marcos Longo, Ryan G. Knox, David M. Medvigy, Naomi M. Levine, Michael C. Dietze, Yeonjoo Kim, Abigail L. S. Swann, Ke Zhang, Christine R. Rollinson, Rafael L. Bras, Steven C. Wofsy, and Paul R. Moorcroft
Geosci. Model Dev., 12, 4309–4346, https://doi.org/10.5194/gmd-12-4309-2019, https://doi.org/10.5194/gmd-12-4309-2019, 2019
Short summary
Short summary
Our paper describes the Ecosystem Demography model. This computer program calculates how plants and ground exchange heat, water, and carbon with the air, and how plants grow, reproduce and die in different climates. Most models simplify forests to an average big tree. We consider that tall, deep-rooted trees get more light and water than small plants, and that some plants can with shade and drought. This diversity helps us to better explain how plants live and interact with the atmosphere.
Marcos Longo, Ryan G. Knox, Naomi M. Levine, Abigail L. S. Swann, David M. Medvigy, Michael C. Dietze, Yeonjoo Kim, Ke Zhang, Damien Bonal, Benoit Burban, Plínio B. Camargo, Matthew N. Hayek, Scott R. Saleska, Rodrigo da Silva, Rafael L. Bras, Steven C. Wofsy, and Paul R. Moorcroft
Geosci. Model Dev., 12, 4347–4374, https://doi.org/10.5194/gmd-12-4347-2019, https://doi.org/10.5194/gmd-12-4347-2019, 2019
Short summary
Short summary
The Ecosystem Demography model calculates the fluxes of heat, water, and carbon between plants and ground and the air, and the life cycle of plants in different climates. To test if our calculations were reasonable, we compared our results with field and satellite measurements. Our model predicts well the extent of the Amazon forest, how much light forests absorb, and how much water forests release to the air. However, it must improve the tree growth rates and how fast dead plants decompose.
Elias C. Massoud, Chonggang Xu, Rosie A. Fisher, Ryan G. Knox, Anthony P. Walker, Shawn P. Serbin, Bradley O. Christoffersen, Jennifer A. Holm, Lara M. Kueppers, Daniel M. Ricciuto, Liang Wei, Daniel J. Johnson, Jeffrey Q. Chambers, Charlie D. Koven, Nate G. McDowell, and Jasper A. Vrugt
Geosci. Model Dev., 12, 4133–4164, https://doi.org/10.5194/gmd-12-4133-2019, https://doi.org/10.5194/gmd-12-4133-2019, 2019
Short summary
Short summary
We conducted a comprehensive sensitivity analysis to understand behaviors of a demographic vegetation model within a land surface model. By running the model 5000 times with changing input parameter values, we found that (1) the photosynthetic capacity controls carbon fluxes, (2) the allometry is important for tree growth, and (3) the targeted carbon storage is important for tree survival. These results can provide guidance on improved model parameterization for a better fit to observations.
Jarmo Mäkelä, Jürgen Knauer, Mika Aurela, Andrew Black, Martin Heimann, Hideki Kobayashi, Annalea Lohila, Ivan Mammarella, Hank Margolis, Tiina Markkanen, Jouni Susiluoto, Tea Thum, Toni Viskari, Sönke Zaehle, and Tuula Aalto
Geosci. Model Dev., 12, 4075–4098, https://doi.org/10.5194/gmd-12-4075-2019, https://doi.org/10.5194/gmd-12-4075-2019, 2019
Short summary
Short summary
We assess the differences of six stomatal conductance formulations, embedded into a land–vegetation model JSBACH, on 10 boreal coniferous evergreen forest sites. We calibrate the model parameters using all six functions in a multi-year experiment, as well as for a separate drought event at one of the sites, using the adaptive population importance sampler. The analysis reveals weaknesses in the stomatal conductance formulation-dependent model behaviour that we are able to partially amend.
Titta Majasalmi and Ryan M. Bright
Geosci. Model Dev., 12, 3923–3938, https://doi.org/10.5194/gmd-12-3923-2019, https://doi.org/10.5194/gmd-12-3923-2019, 2019
Short summary
Short summary
Many land surface models rely on solutions derived from two-stream approximations utilizing leaf-level optical properties, many of which have not been formally reviewed or published. Using plant functional type groupings of the Community Land Model (CLM), we found large deviations between measured and CLM default near-infrared optical properties, implying that the modeled shortwave radiation budget including surface albedo may be expected to change after updating the biased parameters.
Simon P. K. Bowring, Ronny Lauerwald, Bertrand Guenet, Dan Zhu, Matthieu Guimberteau, Ardalan Tootchi, Agnès Ducharne, and Philippe Ciais
Geosci. Model Dev., 12, 3503–3521, https://doi.org/10.5194/gmd-12-3503-2019, https://doi.org/10.5194/gmd-12-3503-2019, 2019
Short summary
Short summary
Few Earth system models represent permafrost soil biogeochemistry, contributing to uncertainty in estimating its response and that of the planet to warming. Because the permafrost contains over double the carbon in the present atmosphere, its fate as it is
unlockedby warming is globally significant. One way it can be mobilised is into rivers, the sea, or the atmosphere: a vector previously ignored in climate modelling. We present a model scheme for resolving this vector at a global scale.
Chunjing Qiu, Dan Zhu, Philippe Ciais, Bertrand Guenet, Shushi Peng, Gerhard Krinner, Ardalan Tootchi, Agnès Ducharne, and Adam Hastie
Geosci. Model Dev., 12, 2961–2982, https://doi.org/10.5194/gmd-12-2961-2019, https://doi.org/10.5194/gmd-12-2961-2019, 2019
Short summary
Short summary
We present a model that can simulate the dynamics of peatland area extent and the vertical buildup of peat. The model is validated across a range of northern peatland sites and over the Northern Hemisphere (> 30° N). It is able to reproduce the spatial extent of northern peatlands and peat carbon accumulation over the Holocene.
Femke Lutz, Tobias Herzfeld, Jens Heinke, Susanne Rolinski, Sibyll Schaphoff, Werner von Bloh, Jetse J. Stoorvogel, and Christoph Müller
Geosci. Model Dev., 12, 2419–2440, https://doi.org/10.5194/gmd-12-2419-2019, https://doi.org/10.5194/gmd-12-2419-2019, 2019
Short summary
Short summary
Tillage practices are under-represented in global biogeochemical models so that assessments of agricultural greenhouse gas emissions and climate mitigation options are hampered. We describe the implementation of tillage modules into the model LPJmL5.0, including multiple feedbacks between soil water, nitrogen, and productivity. By comparing simulation results with observational data, we show that the model can reproduce reported tillage effects on carbon and water dynamics and crop yields.
Thomas Luke Smallman and Mathew Williams
Geosci. Model Dev., 12, 2227–2253, https://doi.org/10.5194/gmd-12-2227-2019, https://doi.org/10.5194/gmd-12-2227-2019, 2019
Short summary
Short summary
Photosynthesis and evapotranspiration are processes with global significance for climate, carbon and water cycling. Process-orientated simulation of these processes and their interactions have till now come at high computational cost. Here we present a new coupled model of intermediate complexity operating at orders of magnitude greater speed. Independent evaluation at FLUXNET sites for a single, global parameterization shows good agreement, with a typical R2 value of ~ 0.60.
Cited articles
Anderson, L. A. and Sarmiento, J. L.: Redfield ratios of remineralization determined by nutrient data analysis, Global Biogeochem. Cy., 8, 65–80, 1994.
Anonymous: Interactive comment on "Evaluating CaCO3-cycle modules in coupled global biogeochemical ocean models" by W. Koeve et al., Geosci. Model Dev. Discuss., 6, 6117-6155, https://doi.org/10.5194/gmdd-6-6117-2013, 2013.
Antonov, J. I., Seidov, D., Boyer, T. P., Locarnini, R. A., Mishonov, A. V., Garcia, H. E., Baranova, O. K., Zweng, M. M., and Johnson, D. R.: World Ocean Atlas 2009, vol. 2: Salinity, NOAA Atlas NESDIS 69, US Government Printing Office, Washington, DC, 184 pp., 2010.
Aumont, O. and Bopp, L.: Globalizing results from ocean in situ iron fertilization studies, Global Biogeochem. Cy.,
Berelson, W. M., Balch, W. M., Najjar, R., Feely, R. A., Sabine, C., and Lee, K.: Relating estimates of CaCO3 production, export, and dissolution in the water column to measurements of CaCO3 rain into sediment traps and dissolution on the sea floor: a revised global carbonate budget, Global Biogeochem. Cy., 21, GB1024, https://doi.org/10.1029/2006GB002803, 2007.
Broecker, W. S.: "NO", a conservative water-mass tracer, Earth Planet. Sc. Lett., 23, 100–107, 1974.
Cai, W.-J., Hu, X., and Juang, W.-J., Jiang, L. Q., Wang, Y., Peng, T.-H., and Zhang, X.: Alkalinity distribution in the western North Atlantic Ocean margins, J. Geophys. Res., 115, C08014, https://doi.org/10.1029/2009JC005482, 2010.
Chen, G.-T. and Millero, F. J.: Gradual increase of oceanic CO2, Nature,
Chung, S.-N., Lee, K., Feely, R. A., Sabine, C. L., Millero, F. J., Wanninkhof, R., Bullister, J. L., Key, R. M., and Peng, T.-H.: Calcium carbonate budget in the Atlantic Ocean based on water column inorganic carbon chemistry, Global Biogeochem. Cy., 17, 1093, https://doi.org/10.1029/2002GB002001, 2003.
Doney, S. C., Lindsay, K., Caldeira, K., Campin, J.-M., Drange, H., Dutay, J.-C., Follows, M., Gao, Y., Gnanadesikan, A., Gruber, N., Ishida, A., Joos, F., Madec, G., Maier-Reimer, E., Marschall, J. C., Matear, R. J., Monfray, P., Mouchet, A., Najjar, R., Orr, J. C., Plattner, G.-K., Sarmiento, J., Schlitzer, R., Slater, R., Totterdell, I. J., Weirig, M.-F., Yamanaka, Y., and Yool, A.: Evaluating global ocean carbon models: the importance of realistic physics, Global Biogeochem. Cy., 18, GB3017, https://doi.org/10.1029/2003GB002150, 2004.
Dunne, J. P., Hales, B., andToggweiler, J. R.: Global calcite cycling constrained by sediment preservation controls, Global Biogeochem. Cy., 26, GB3023, https://doi.org/10.1029/2010GB003935, 2012.
Duteil, O., Koeve, W., Oschlies, A., Aumont, O., Bianchi, D., Bopp, L., Galbraith, E., Matear, R., Moore, J. K., Sarmiento, J. L., and Segschneider, J.: Preformed and regenerated phosphate in ocean general circulation models: can right total concentrations be wrong?, Biogeosciences, 9, 1797–1807, https://doi.org/10.5194/bg-9-1797-2012, 2012.
Duteil, O., Koeve, W., Oschlies, A., Bianchi, D., Kriest, I., Galbraith, E., and Matear, R.: A new estimate of ocean oxygen utilization points to a reduced rate of respiration in the ocean interior, Biogeosciences, 10, 7723–7738, https://doi.org/10.5194/bg-10-7723-7738, 2013.
Feely, R. A., Sabine, C. L., Lee, K., Millero, F. J., Lamb, M. F., Greeley, D., Bullister, J. L., Key, R. M., Peng, T.-H., Kozyr, A., Ono, T., and Wong, C. S.: In situ calcium carbonate dissolution in the Pacific Ocean, Global Biogeochem. Cy., 16, 1144, https://doi.org/10.1029/2002GB001866, 2002.
Friis, K.: A review of marine anthropogenic CO2 definitions: introducing a thermodynamic appraoch based on observations, Tellus B,
Friis, K., Körtzinger, A., and Wallace, D. W. R.: A concept study on the use and misuse of salinity-normalised alkalinity data, Geophys. Res. Lett.,
Friis, K., Najjar, R. G., Follows, M. J., Dutkiewicz, S., Körtzinger, A., and Johnson, K. M.: Dissolution of calcium carbonate: observations and model results in the subpolar North Atlantic, Biogeosciences, 4, 205–213, https://doi.org/10.5194/bg-4-205-2007, 2007.
Gehlen, M., Gangstø, R., Schneider, B., Bopp, L., Aumont, O., and Ethe, C.: The fate of pelagic CaCO3 production in a high CO2 ocean: a model study, Biogeosciences, 4, 505–519, https://doi.org/10.5194/bg-4-505-2007, 2007.
Howard, M. T., Winguth, A. M. E., Klaas, C., and Maier-Reimer, E.: Sensitivity of ocean carbon tracer distributions to particulate organic flux parameterizations, Global Biogeochem. Cy.,
Ilyina, T., Zeebe, R. E., Maier-Reimer, E., and Heinze, C.: Early detection of ocean acidification effects on marine calcification, Global Biogeochem. Cy.,
Ito, T., Follows, M. J., and Boyle, E. A.: Is AOU a good measure of respiration in the ocean?, Geophys. Res. Lett.,
Kanamori, S. and Ikegami, H.: Calcium–alkalinity relationship in the North Pacific, J. Oceanogr. Soc. Jpn., 38, 57–62, 1982.
Karstensen, J. and Tomczak, M.: Age determination of mixed water masses using CFC and oxygen data, J. Geophys. Res., 103, 18599–18609, 1998.
Key, R. M., Kozyr, A., Sabine, C. L., Lee, K., Wanninkhof, R., Bullister, J. L., Feely, R. A., Millero, F. J., Mordy, C., and Peng, T.-H.: A global ocean carbon climatology: results from Global Data Analysis Project (GLODAP), Global Biogeochem. Cy., 18, GB4031, https://doi.org/10.1029/2004GB002247, 2004.
Khatiwala, S.: A computational framework for simulation of biogeochemical tracers in the ocean, Global Biogeochem. Cy., 21, GB3001, https://doi.org/10.1029/2007GB002923, 2007.
Khatiwala, S., Visbeck, M., and Cane, M. A.: Accelerated simulation of passive tracers in ocean circulation models, Ocean Model., 9, 51–69, 2005.
Khatiwala, S., Primeau, F., and Holzer, M.: Ventilation of the deep ocean constrained with tracer observations and implications for radiocarbon estimates of ideal mean age, Earth Planet. Sc. Lett., 325, 116–125, 2012.
Koeve, W.: Spring bloom carbon to nitrogen ratio of net community production in the temperate N. Atlantic, Deep-Sea Res. Pt. I, 51, 1579–1600, 2004.
Koeve, W.: Stoichiometry of the biological pump in the North Atlantic – constraints from climatological data, Global Biogeochem. Cy., GB3018, https://doi.org/10.1029/2004GB002407, 2006.
Koeve, W., Wagner, H., Kähler, P., and Oschlies, A.: 14C-ages in global ocean circulation models, Geosci. Model Dev. Discuss., submitted, 2014.
Körtzinger, A., Koeve, W., Kähler, P., and Mintrop, L.: C : N ratios in the mixed layer during the productive season in the northeast Atlantic ocean, Deep-Sea Res. Pt. I,
Kriest, I., Khatiwala, S., and Oschlies, A.: Towards and assessment of simple global marine biogeochemical models of different complexity, Prog. Oceanogr., 86, 337–360, 2010.
Kriest, I., Oschlies, A., and Khatiwala, S.: Sensitivity analysis of simple global marine biogeochemical models, Global Biogeochem. Cy, 26, GB2029, https://doi.org/10.1029/2011GB004072, 2012.
Marshall, J. and Speer, K.: Closure of the meridional overturning circulation through Southern Ocean upwelling, Nat. Geosci.,
Marshall, J., Adcroft, A., Hill, C., Perelman, L., and Heisey, C.: A finite-volume, incompressible navier-stokes model for studies of the ocean on parallel computers, J. Geophys. Res., 102, 5733–5752, 1997.
Martin, J. H., Knauer, G. A., Karl, D. M., and Broenkow, W. W.: VERTEX: carbon cycling in the northeast Pacific, Deep-Sea Res., 34, 267–285, 1987.
Matsumoto, K. and Gruber, N.: How accurate is the estimation of anthropogenic carbon in the ocean? An evaluation of the $\Delta \chemC^\ast$ method, Global Biogeochem. Cy.,
Maier-Reimer, E., Kriest, I., Segschneider, J., and Wetzel, P.: The Hamburg ocean carbon cycle model HAMOCC5.1. Technical description, Release 1.1. Berichte zur Erdsystemforschung, 14/2005, Max-Planck-Institut für Meteorologie, 2005.
Morse, J. W. and Arvidson, R. S.: The dissolution kinetics of major sedimentary carbonate minerals, Earth-Sci. Rev., 58, 51-84, 2002.
Najjar, R. G., Jin, X., Louanchi, F., Aumont, O., Caldeira, K., Doney, C. S., Dutay, J.-C., Follows, M., Gruber, N., Joos, F., Lindsay, K., Maier-Reimer, E., Matear, R. J., Matsumoto, K., Monfray, P., Mouchet, A., Orr, J. C., Plattner, G.-K., Sarmiento, J. L., Schlitzer, R., Slater, R. D., Wierig, M.-F., Yamanaka, Y., and Yool, A.: Impact of circulation on export production, dissolved organic matter, and dissolved oxygen in the ocean: results from phase II of the Ocean Carbon-cycle Model Intercomparison Project (OCMIP-2), Global Biogeochem. Cy., 21, GB3007, https://doi.org/10.1029/2006GB002857, 2007.
Omta, A. W., Goodwin, P., and Follow, M. J.: Multiple regimes of air-sea carbon partitioning identified from constant-alkalinity buffer factors, Global Biogeochem. Cy.,
Omta, A. W., Dutkiewicz, S., and Follows, M. J.: Dependence of the ocean-atmosphere partitioning of carbon on temperature and alkalinity, Global Biogeochem. Cy., 25, GB1003, https://doi.org/10.1029/2010GB003839, 2011.
Oschlies, A., Schulz, K. G., Riebesell, U., and Schmittner, A.: Simulated 21st centuryís increase in oceanic suboxia by CO2-enhanced biotic carbon export, Global Biogeochem. Cy.,
Pytkowicz, R. M.: On the apparent oxygen utilization and the preformed phosphate in the oceans, Limnol. Oceanogr., 16, 39–42, 1971.
Redfield, A. C., Ketchum, B. H., and Richards, F. A.: The influence of organisms on the composition of sea-water, in: The Sea, vol. 2, edited by: Hill, M. N., Whiley-Intersciences, New York, 26–77, 1963.
Ridgwell, A., Zondervan, I., Hargreaves, J. C., Bijma, J., and Lenton, T. M.: Assessing the potential long-term increase of oceanic fossil fuel CO2 uptake due to CO2-calcification feedback, Biogeosciences, 4, 481–492, https://doi.org/10.5194/bg-4-481-2007, 2007.
Robbins, P. E.: Oceanic carbon transport carried by freshwater divergence: are salinity normalizations useful?, J. Geophys. Res., 106, 30939–30946, 2001.
Sabine, C. L., Key, R. M., Feely, R. A., and Greeley, D.: Inorganic carbon in the Indian Ocean: distribution and dissolution processes, Global Biogeochem. Cy., 16, 1067, https://doi.org/10.1029/2002GB001869, 2002.
Sabine, C. L., Feely, R. A., Gruber, N., Key, R. M., Lee, K., Bullister, J. L., Wanninkhof, R., Wong, C. S., Wallace, D. W. R., Tilbrook, B., Millero, F. J., Peng., T.-H., Kozyr, A., Ono, T., and Rios, A. F.: The oceanic sink for anthropogenic CO2, Science, 305, 367–371, 2004.
Sarmiento, J. L., Dunne, J., Gnanadesikan, A., Key, R. M., Matsumoto, K., and Slater, R.: A new estimate of the CaCO3 to organic carbon export ratio, Global Biogeochem. Cy., 16, GB1107, https://doi.org/10.1029/2002GB001919, 2002.
Sarmiento, J. L. and Gruber, N.: Ocean Biogeochemical Dynamics, Princeton University Press, Princeton and Oxford, 503 pp., 2006
Schmittner, A., Oschlies, A., Giraud, X., Eby, M., and Simmons, H. L.: A global model of the marine ecosystem for long-term simulations: sensitivity to ocean mixing, buoyancy forcing, particle sinking, and dissolved organic matter cycling, Global Biogeochem. Cy., 19, GB3004, https://doi.org/10.1029/2004GB002283, 2005.
Séférian, R., Bopp, L., Gehlen, M., Orr, J. C., Ethé, C., Cadule, P., Aumont, O., Mélia, D. S. Y., Voldoire, A., and Madec, G.: Skill assessment of three earth system models with common marine biogeochemistry, Clim. Dynam., 40, 2549–2573, https://doi.org/10.1007/s00382-012-1362-8, 2013.
Schneider, B., Bopp, L., and Gehlen, M.: Assessing the sensitivity of modeled air-sea CO2 exchange to the remineralization depth of particulate organic and inorganic carbon, Global Biogeochem. Cy., 22, GB3021, https://doi.org/10.1029/2007GB003100, 2008.
Wolf-Gladrow, D. A., Zeebe, R. E., Klaas, C., Körtzinger, A., and Dickson, A. G.: Total alkalinity: the explicit conservative expression and its application to biogeochemical processes, Mar. Chem.,
