Articles | Volume 7, issue 3
https://doi.org/10.5194/gmd-7-1211-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-7-1211-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Development and technical paper
| 
27 Jun 2014
Development and technical paper |
| 27 Jun 2014
Uncertainties in estimating regional methane emissions from rice paddies due to data scarcity in the modeling approach
LAPC, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
Q. Zhang
LAPC, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
University of Chinese Academy of Sciences, Beijing, 100049, China
Y. Huang
LVEC, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
T. T. Li
LAPC, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
J. Y. Bian
LAPC, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
Faculty of Resources and Environmental Science, Hubei University, Wuhan, 430062, China
P. F. Han
LAPC, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
University of Chinese Academy of Sciences, Beijing, 100049, China
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Methane (CH4) is a potent greenhouse gas. Northern China contributes a large proportion of CH4 emissions yet large observation gaps are existed. Here we compiled a comprehensive dataset which is publicly available including ground-based, satellite-based, inventory and modeling results, to show the CH4 concentrations, enhancements and spatial-temporal variations. The data can benefit the research community, and policy makers for future observations, atmospheric inversions and policy-making.
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Spatial soil organic carbon (SOC) data is critical for predictions in carbon climate feedbacks and future climate trends, but no conclusion has yet been reached on which dataset to be used for specific purposes. We evaluated the SOC estimates from five widely used global soil datasets and a regional permafrost dataset, and identify uncertainties of SOC estimates by region, biome, and data sources, hoping to help improve SOC/soil data in the future.
Xiaohui Lin, Wen Zhang, Monica Crippa, Shushi Peng, Pengfei Han, Ning Zeng, Lijun Yu, and Guocheng Wang
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CH4 is a potent greenhouse gas, and China’s anthropogenic CH4 emissions account for a large proportion of global total emissions. However, the existing estimates either focus on a specific sector or lag behind real time by several years. We collected and analyzed 12 datasets and compared them to reveal the spatiotemporal changes and their uncertainties. We further estimated the emissions from 1990–2019, and the estimates showed a robust trend in recent years when compared to top-down results.
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We simulate the spatiotemporal dynamics of aboveground biomass (AGB) in Inner Mongolian grasslands using a machine-learning-based approach. Under climate change, on average, compared with the historical AGB (average of 1981–2019), the AGB at the end of this century (average of 2080–2100) would decrease by 14 % under RCP4.5 and 28 % under RCP8.5. The decrease in AGB might be mitigated or even reversed by positive carbon dioxide enrichment effects on plant growth.
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Reliable models are required to estimate global wetland CH4 emissions, which are the largest and most uncertain source of atmospheric CH4. This paper evaluated CH4MODwetland and TEM models against CH4 measurements from different continents and wetland types. Based on best-model performance, we estimated 117–125 Tg yr−1 of global CH4 emissions from wetlands for the period 2000–2010. Efforts should be made to reduce estimate uncertainties for different wetland types and regions.
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Cropland soil carbon sequestration contribute to not only climate change mitigation but also to sustainable agricultural production. This paper investigates soil carbon dynamics across the global main cereal cropping systems at a fine spatial resolution, using a modeling approach based on state-of-the-art databases of soil and climate. The key environmental controls on soil carbon changes were also identified.
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Regional estimated uncertainties originate from methodological failures, errors, and supporting data insufficiency. A case study showed that the fallacy of the CH4MOD contributed 56.6 % to the uncertainty of a national inventory, with the remaining 43.4 % attributed to the scarcity of model inputs. We also revealed a dilemma between model performance and data availability: a model with better performance may reduce uncertainty from model fallacy but increases the uncertainty from data scarcity.
T. Li, W. Zhang, Q. Zhang, Y. Lu, G. Wang, Z. Niu, M. Raivonen, and T. Vesala
Biogeosciences, 12, 6853–6868, https://doi.org/10.5194/bg-12-6853-2015, https://doi.org/10.5194/bg-12-6853-2015, 2015
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Natural wetlands in China have experienced extensive conversion and climate warming, which makes the estimation of methane emission from wetlands highly uncertain. In this paper, we simulated an increase of 25.5% in national CH4 fluxes from 1950 to 2010, which was mainly induced by climate warming. Although climate warming has accelerated CH4 fluxes, the total amount of national CH4 emissions decreased by approximately 2.35 Tg (1.91－2.81 Tg), due to a large wetland loss of 17.0 million ha.
Zhen Zhang, Benjamin Poulter, Joe R. Melton, William J. Riley, George H. Allen, David J. Beerling, Philippe Bousquet, Josep G. Canadell, Etienne Fluet-Chouinard, Philippe Ciais, Nicola Gedney, Peter O. Hopcroft, Akihiko Ito, Robert B. Jackson, Atul K. Jain, Katherine Jensen, Fortunat Joos, Thomas Kleinen, Sara H. Knox, Tingting Li, Xin Li, Xiangyu Liu, Kyle McDonald, Gavin McNicol, Paul A. Miller, Jurek Müller, Prabir K. Patra, Changhui Peng, Shushi Peng, Zhangcai Qin, Ryan M. Riggs, Marielle Saunois, Qing Sun, Hanqin Tian, Xiaoming Xu, Yuanzhi Yao, Yi Xi, Wenxin Zhang, Qing Zhu, Qiuan Zhu, and Qianlai Zhuang
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This study assesses global methane emissions from wetlands between 2000 and 2020 using multiple models. We found that wetland emissions increased by 6–7 Tg CH4 yr-1 in the 2010s compared to the 2000s. Rising temperatures primarily drove this increase, while changes in precipitation and CO2 levels also played roles. Our findings highlight the importance of wetlands in the global methane budget and the need for continuous monitoring to understand their impact on climate change.
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Methane (CH4) is a potent greenhouse gas. Northern China contributes a large proportion of CH4 emissions yet large observation gaps are existed. Here we compiled a comprehensive dataset which is publicly available including ground-based, satellite-based, inventory and modeling results, to show the CH4 concentrations, enhancements and spatial-temporal variations. The data can benefit the research community, and policy makers for future observations, atmospheric inversions and policy-making.
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Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2022-232, https://doi.org/10.5194/essd-2022-232, 2022
Manuscript not accepted for further review
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Spatial soil organic carbon (SOC) data is critical for predictions in carbon climate feedbacks and future climate trends, but no conclusion has yet been reached on which dataset to be used for specific purposes. We evaluated the SOC estimates from five widely used global soil datasets and a regional permafrost dataset, and identify uncertainties of SOC estimates by region, biome, and data sources, hoping to help improve SOC/soil data in the future.
Xiaohui Lin, Wen Zhang, Monica Crippa, Shushi Peng, Pengfei Han, Ning Zeng, Lijun Yu, and Guocheng Wang
Earth Syst. Sci. Data, 13, 1073–1088, https://doi.org/10.5194/essd-13-1073-2021, https://doi.org/10.5194/essd-13-1073-2021, 2021
Short summary
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CH4 is a potent greenhouse gas, and China’s anthropogenic CH4 emissions account for a large proportion of global total emissions. However, the existing estimates either focus on a specific sector or lag behind real time by several years. We collected and analyzed 12 datasets and compared them to reveal the spatiotemporal changes and their uncertainties. We further estimated the emissions from 1990–2019, and the estimates showed a robust trend in recent years when compared to top-down results.
Guocheng Wang, Zhongkui Luo, Yao Huang, Wenjuan Sun, Yurong Wei, Liujun Xiao, Xi Deng, Jinhuan Zhu, Tingting Li, and Wen Zhang
Atmos. Chem. Phys., 21, 3059–3071, https://doi.org/10.5194/acp-21-3059-2021, https://doi.org/10.5194/acp-21-3059-2021, 2021
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We simulate the spatiotemporal dynamics of aboveground biomass (AGB) in Inner Mongolian grasslands using a machine-learning-based approach. Under climate change, on average, compared with the historical AGB (average of 1981–2019), the AGB at the end of this century (average of 2080–2100) would decrease by 14 % under RCP4.5 and 28 % under RCP8.5. The decrease in AGB might be mitigated or even reversed by positive carbon dioxide enrichment effects on plant growth.
Tingting Li, Yanyu Lu, Lingfei Yu, Wenjuan Sun, Qing Zhang, Wen Zhang, Guocheng Wang, Zhangcai Qin, Lijun Yu, Hailing Li, and Ran Zhang
Geosci. Model Dev., 13, 3769–3788, https://doi.org/10.5194/gmd-13-3769-2020, https://doi.org/10.5194/gmd-13-3769-2020, 2020
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Reliable models are required to estimate global wetland CH4 emissions, which are the largest and most uncertain source of atmospheric CH4. This paper evaluated CH4MODwetland and TEM models against CH4 measurements from different continents and wetland types. Based on best-model performance, we estimated 117–125 Tg yr−1 of global CH4 emissions from wetlands for the period 2000–2010. Efforts should be made to reduce estimate uncertainties for different wetland types and regions.
Guocheng Wang, Wen Zhang, Wenjuan Sun, Tingting Li, and Pengfei Han
Atmos. Chem. Phys., 17, 11849–11859, https://doi.org/10.5194/acp-17-11849-2017, https://doi.org/10.5194/acp-17-11849-2017, 2017
Short summary
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Cropland soil carbon sequestration contribute to not only climate change mitigation but also to sustainable agricultural production. This paper investigates soil carbon dynamics across the global main cereal cropping systems at a fine spatial resolution, using a modeling approach based on state-of-the-art databases of soil and climate. The key environmental controls on soil carbon changes were also identified.
Wen Zhang, Wenjuan Sun, and Tingting Li
Biogeosciences, 14, 163–176, https://doi.org/10.5194/bg-14-163-2017, https://doi.org/10.5194/bg-14-163-2017, 2017
Short summary
Short summary
Regional estimated uncertainties originate from methodological failures, errors, and supporting data insufficiency. A case study showed that the fallacy of the CH4MOD contributed 56.6 % to the uncertainty of a national inventory, with the remaining 43.4 % attributed to the scarcity of model inputs. We also revealed a dilemma between model performance and data availability: a model with better performance may reduce uncertainty from model fallacy but increases the uncertainty from data scarcity.
T. Li, W. Zhang, Q. Zhang, Y. Lu, G. Wang, Z. Niu, M. Raivonen, and T. Vesala
Biogeosciences, 12, 6853–6868, https://doi.org/10.5194/bg-12-6853-2015, https://doi.org/10.5194/bg-12-6853-2015, 2015
Short summary
Short summary
Natural wetlands in China have experienced extensive conversion and climate warming, which makes the estimation of methane emission from wetlands highly uncertain. In this paper, we simulated an increase of 25.5% in national CH4 fluxes from 1950 to 2010, which was mainly induced by climate warming. Although climate warming has accelerated CH4 fluxes, the total amount of national CH4 emissions decreased by approximately 2.35 Tg (1.91－2.81 Tg), due to a large wetland loss of 17.0 million ha.
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-170, https://doi.org/10.5194/gmd-2024-170, 2024
Revised manuscript accepted for GMD
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Wildfires release large amounts of greenhouse gases, contributing to global warming. We developed a new model that provides near-real-time estimates of wildfire emissions in China. Our model improves the accuracy of burned area measurements and incorporates advanced data in fuel loads and emission factors. We found that most emissions come from agricultural fires, while emissions from forests and grasslands are decreasing. This model will help reduce the environmental impacts of wildfires.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
EGUsphere, https://doi.org/10.5194/egusphere-2024-2592, https://doi.org/10.5194/egusphere-2024-2592, 2024
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Our study maps global nitrogen (N) and phosphorus (P) availability and how they’ve changed from 1901 to 2018. We found that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation has increased, especially in the tropics, while N limitation has decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
EGUsphere, https://doi.org/10.5194/egusphere-2024-1914, https://doi.org/10.5194/egusphere-2024-1914, 2024
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Under climate change, the conditions for wildfires to form are becoming more frequent in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a crucial platform for future developments.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, Luke Smallmann, Susan Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zähle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek El-Madany, Mirco Migliavacca, Marika Honkanen, Yann Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaetan Pique, Amanda Ojasalo, Shaun Quegan, Peter Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
EGUsphere, https://doi.org/10.5194/egusphere-2024-1534, https://doi.org/10.5194/egusphere-2024-1534, 2024
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When it comes to climate change, the land surfaces are where the vast majority of impacts happen. The task of monitoring those across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us see what changes on our lands.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
EGUsphere, https://doi.org/10.5194/egusphere-2024-1542, https://doi.org/10.5194/egusphere-2024-1542, 2024
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Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical process-based model developed to represent the global SIF observed by GOSAT. Our model simulation reproduced the global distribution and seasonal variations of GOSAT SIF. The model can be utilized to improve photosynthetic process through the combination of biogeochemical modeling and GOSAT SIF.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-53, https://doi.org/10.5194/gmd-2024-53, 2024
Revised manuscript accepted for GMD
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We describe and test the size-based NUM model, that define organisms by a single set of parameters, on planktonic unicellular ecosystems in a eutrophic and an oligotrophic site. Results show both sites can be modelled with similar parameters, and a robust performance over a wide range of parameters. The study show that the NUM model is useful for non-experts and applicable for modelling domains with limited ecosystem data. It holds promise for evolutionary scenarios and deep-time climate models.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
EGUsphere, https://doi.org/10.5194/egusphere-2024-1360, https://doi.org/10.5194/egusphere-2024-1360, 2024
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Our research uses deep learning to predict organic carbon stocks in ocean sediments, crucial for understanding their role in the global carbon cycle. By analyzing over 22,000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate the top 10 cm of ocean sediments hold about 171 petagrams of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
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This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
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We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
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Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
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The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
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We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Cited articles
Aumann, G., Ebner, H., and Tang, L.: Automatic derivation of skeleton lines from digitized contours. J. Photogr. Remote Sens., 46, 259–268, 1991.
Cai, Z. C.: A category for estimate of CH4 emission from rice paddy fields in China, Nutr. Cycl. Agroecosys., 49, 171–179, 1997.
Commission of The First National Pollution Source Census Data Compilation of China (CFPC): Datasets of China Pollution Source Census, China Environmental Science Press, Beijing, China, 2011.
Editorial Board of China Agriculture Yearbook (EBCAY): China Agriculture Yearbook, China Agriculture Press, Beijing, China, 2011.
Frolking, S., Qiu, J., Boles, S., Xiao, X., Liu, J., Zhuang, Y., Li, C., and Qin, X.: Combining remote sensing and ground census data to develop new maps of the distribution of rice agriculture in China, Global Biogeochem. Cy., 16, 1091, https://doi.org/10.1029/2001GB001425, 2002.
Goovaerts, P.: Geostatistical modelling of uncertainty in soil sciences, Geoderma, 103, 3–26, 2001.
Han, X., Liu, X., Gao, L., and Li, L.: Climatic zonification of cropping system in China, in: Multiple cropping systems in China, edited by: Han, X. and Liu, X., China Agriculture University Press, Beijing, 28–46, 1987 (in Chinese).
Harvey, L. D. D.: Up scaling in global change research, Clim. Change., 44, 225–263, 2000.
Huang, Y., Sass, R. L., and Fisher, F. M.: Methane emission from Texas rice paddy soils1 Quantitative multi-year dependence of CH4 emission on soil, cultivar and grain yield, Glob. Change Biol., 3, 479–489, 1997.
Huang, Y., Sass, R. L., and Fisher, F. M.: A semi−empirical model of methane emission from flooded rice paddy soils, Glob. Change Biol., 4, 247–268, 1998a.
Huang, Y., Sass, R. L., and Fisher, F. M.: Model estimates of methane emission from irrigated rice cultivation of China, Glob. Change Biol., 4, 809–821, 1998b.
Huang, Y., Zhang, W., Zheng, X., Li, J., and Yu, Y.: Modeling methane emission from rice paddies with various agricultural practices, J. Geophys. Res., 109, D08113, https://doi.org/10.1029/2003JD004401, 2004.
Huang, Y., Zhang, W., Zheng, X., Han, S., and Yu, Y.: Estimates of methane emissions from Chinese rice paddies by linking a model to GIS database, Acta Ecol. Sinica, 26, 980–987, 2006.
Huang, Y., Zhang, W., Sun, W., and Zheng, X.: Net primary production of Chinese croplands from 1955 to 1999, Ecol. Appl., 17, 692–701, 2007.
IPCC (Intergovernmental Panel on Climate Change): IPCC Good Practice Guidance and Uncertainty Management in National Greenhouse Gas Inventories, edited by: Penman, J., Habetsion, S., Abel, K., Eggleston, S., and Pullus, T., IPCC/OECD/IEA/IGES, Hayama, Japan, 2000.
Kennedy, M. C. and O'Hagan, A.: Bayesian calibration of computer models, J. R. Stat. Soc. B., 63, 425–464, 2011.
Khalil, M. A. K. and Butenhoff, C. L.: Spatial variability of methane emission from rice fields and implications for experimental design, J. Geophys. Res., 113, G00A09, https://doi.org/10.1029/2007JG000517, 2008.
King, A. W., Johnson, A. R., and O'Neill, R. V.: Transmutation and functional representation of heterogeneous landscapes, Landscape Ecol., 5, 239–253, 1991.
Li, C., Qiu, J., Frolking, S., Xiao, X., Salas, W., Moore, B., Boles, S., Huang, Y., and Sass, R.: Reduced methane emissions from large-scale changes in water management of China's rice paddies during 1980–2000, Geophys. Res. Lett., 29, 1972, https://doi.org/10.1029/2002GL015370, 2002.
Li, C., Mosier, A., Wassmann, R., Cai, Z., Zheng, X., Huang, Y., Tsuruta, H., Boonjawat, J., and Lantin, R.: Modeling greenhouse gas emissions from rice-based production systems: Sensitivity and up scaling, Global Biogeochem. Cy., 18, GB1043, https://doi.org/10.1029/2003GB002045, 2004.
Matthews, R. B., Wassmann, R., Knox, J. W., and Buendia, L. V.: Using a Crop/Soil Simulation Model and GIS Techniques to Assess Methane Emissions from Rice Fields in Asia, IV, Upscaling to National Levels, Nutr. Cycl. Agroecosys., 58, 210–217, 2000.
Oberthür, T., Goovaerts, P., and Dobermann, A.: mapping soil texture classes using field texturing, particle size distribution and local knowledge by both conventional and geostatistical methods, Eur. J. Soil Sci., 50, 457–479, 1999.
Ogle, S., Breidt, F., Eve, M., and Paustian, K.: Uncertainty in estimating land use and management impacts on soil organic carbon storage for US agricultural lands between 1982 and 1997, Glob. Change Biol., 9, 1521–1542, 2003.
Ogle, S., Breidt, F., Easter, M., Williams, S., Killian, K., and Paustian, K.: Scale and uncertainty in modeled soil organic carbon stock changes for US croplands using a process-based model, Glob. Change Biol., 16, 810–822, 2010.
Peng, S., Li, D., Xu, J., Ding, J., He, Y., and Yu, J.: Effect of Water-Saving Irrigation on the Law of CH4 Emission from Paddy Field, Environ. Sci., 28, 9–13, 2007.
Ren, W., Tian, H., Xu, X., Liu, M., Lu, C., Chen, G., Melillo, J., Reilly, J., and Liu, J.: Spatial and temporal patterns of CO2 and CH4 fluxes in China's croplands in response to multifactor environmental changes, Tellus B, 63, 222–240, https://doi.org/10.1111/j.1600-0889.2010.00522.x, 2011.
Ross, S. M.: A First Course in Probability, 7th Edn., Pearson Education Inc. Prentice Hall, 355–358, 2006.
Shi, X., Yu, D., Warner, E. D., Pan, X., Peterson, G. W., Gong, Z., and Weindorf, D. C.: Soil database of 1:1,000,000 digital soil survey and reference system of the Chinese genetic soil classification system, Soil Survey Horizons, 45, 129–136, 2004.
Shi, X., Yu, D., Yang, G., Wang, H., Sun, W., Guo, H., and Gong, Z.: Cross-reference benchmarks for translating the genetic soil classification of China into the Chinese soil taxonomy. Pedosphere, 16, 147–153, 2006.
Singh, S., Kumar, S., and Jain, M. C.: Methane emission from two India soil planted with different rice cultivars, Biol. Fertility Soil., 25, 285–289, 1997.
van Bodegom, P. M., Leffelaar, P. A., Stams, A. J. M., and Wassmann, R.: Modeling methane emissions from rice fields: Variability, uncertainty, and sensitivity analysis of processes involved, Nutr. Cyc. Agroecosys., 58, 231–248, 2000.
van Bodegom, P. M., Verburg, P. H., Stein, A., Adiningsih, S., and Denier van der Gon, H. A. C.: Effects of interpolation and data resolution on methane emission estimation from rice paddies, Environ. Ecol. Stat., 9, 5–26, 2002.
Verburg, P. H., van Bodegom, P. M., Denier van der Gon, H. A. C., Bergsma, A., and van Breemen, N.: Upscaling regional emissions of greenhouse gases from rice cultivation: methods and sources of uncertainty, Plant Ecol., 182, 89–106, 2006.
Wang, B., Neue, H. U., and Sanmote, H. P.: Effect of cultivar difference, "IR72", "IR69958" and "Dular") on methane emission, Agr. Ecosys. Environ. 62, 31–40, 1997.
Wassmann, R., Neue, H. U., Alberto, M. C. R., Lantin, R. S., Bueno, C., Llenaresas, D., Arah, J. R. M., Papen, H., Rennenberg, H., and Seiler, W.: Flux and pools of methane in wetland rice soils with varying organic inputs, Environ. Monit. Assess., 42, 163–173, 1996.
Xie, B., Zhou, Z., Zheng, X., Zhang, W., and Zhu, J.: Modeling methane emissions from paddy rice fields under elevated atmospheric carbon dioxide conditions, Adv. Atmos. Sci., 27, 100–114, 2010.
Yan, X., Cai, Z., Ohara, T., and Akimoto, H.: Methane emission from rice fields in mainland China: Amount and seasonal and spatial distribution, J. Geophys. Res., 108, 4505, https://doi.org/10.1029/2002JD003182, 2003.
Yao, H., Huang, Y., and Chen, Z.: Estimation of methane from rice paddies in mainland China, Global Biogeochem. Cy., 10, 641–649, 1996.
Yu, Y., Huang, Y., and Zhang, W.: Modelling soil organic carbon change in croplands of China, 1980–2009, Global Planet. Change, 82–83, 115–128, 2012.
Zhang, F., Wang, D., and Qiu, B.: Map of Agro-Climate in China, Science Press, Beijing, China, 1987 (in Chinese).
Zhang, W., Yu, Y., Huang, Y., Li, T., and Wang, P.: Modeling methane emissions from irrigated rice cultivation in China from 1960 to 2050, Glob. Change Biol., 17, 3511–3523, 2011.
Zhao, Q. and Li, Q.: Presents and prospects of crop straw application in southern China, in: Mechanism and Techniques in Straw Application, edited by: Liu, X., Gao, W., and Zhu, W., China Agricultural Science and Technology Press, Beijing, China, 138–146, 2001 (in Chinese).
