Articles | Volume 19, issue 19
https://doi.org/10.5194/gmd-19-9301-2026
© Author(s) 2026. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-19-9301-2026
© Author(s) 2026. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
02 Oct 2026
Model description paper |
| 02 Oct 2026
| 02 Oct 2026
ShyBFM v1.0: unstructured grid advection-diffusion-reaction modelling for coastal biogeochemical processes
Jacopo Alessandri
CORRESPONDING AUTHOR
CMCC Foundation – Euro-Mediterranean Center on Climate Change, Lecce, Italy
Giulia Bonino
CMCC Foundation – Euro-Mediterranean Center on Climate Change, Lecce, Italy
Tomas Lovato
CMCC Foundation – Euro-Mediterranean Center on Climate Change, Lecce, Italy
Momme Butenschön
CMCC Foundation – Euro-Mediterranean Center on Climate Change, Lecce, Italy
Lorenzo Mentaschi
Department of Physics and Astronomy (DIFA), University of Bologna, Bologna, Italy
Giorgia Verri
CMCC Foundation – Euro-Mediterranean Center on Climate Change, Lecce, Italy
Ivan Federico
CMCC Foundation – Euro-Mediterranean Center on Climate Change, Lecce, Italy
Nadia Pinardi
Department of Physics and Astronomy (DIFA), University of Bologna, Bologna, Italy
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Paolo Oddo, Mario Adani, Francesco Carere, Andrea Cipollone, Anna Chiara Goglio, Eric Jansen, Ali Aydogdu, Francesca Mele, Italo Epicoco, Jenny Pistoia, Emanuela Clementi, Nadia Pinardi, and Simona Masina
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Seimur Shirinov, Ivan Federico, Simone Bonamano, Salvatore Causio, Nicolás Biocca, Viviana Piermattei, Daniele Piazzolla, Jacopo Alessandri, Lorenzo Mentaschi, Giovanni Coppini, Marco Marcelli, and Nadia Pinardi
Nat. Hazards Earth Syst. Sci., 25, 3737–3758, https://doi.org/10.5194/nhess-25-3737-2025, https://doi.org/10.5194/nhess-25-3737-2025, 2025
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Salvatore Causio, Seimur Shirinov, Ivan Federico, Giovanni De Cillis, Emanuela Clementi, Lorenzo Mentaschi, and Giovanni Coppini
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Ocean Sci., 20, 1513–1526, https://doi.org/10.5194/os-20-1513-2024, https://doi.org/10.5194/os-20-1513-2024, 2024
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Bart van den Hurk, Nadia Pinardi, Alexander Bisaro, Giulia Galluccio, José A. Jiménez, Kate Larkin, Angélique Melet, Lavinia Giulia Pomarico, Kristin Richter, Kanika Singh, Roderik van de Wal, and Gundula Winter
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Nadia Pinardi, Bart van den Hurk, Michael Depuydt, Thorsten Kiefer, Petra Manderscheid, Lavinia Giulia Pomarico, and Kanika Singh
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State Planet, 3-slre1, 3, https://doi.org/10.5194/sp-3-slre1-3-2024, https://doi.org/10.5194/sp-3-slre1-3-2024, 2024
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Dimitra Denaxa, Gerasimos Korres, Giulia Bonino, Simona Masina, and Maria Hatzaki
State Planet, 4-osr8, 11, https://doi.org/10.5194/sp-4-osr8-11-2024, https://doi.org/10.5194/sp-4-osr8-11-2024, 2024
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Ronan McAdam, Giulia Bonino, Emanuela Clementi, and Simona Masina
State Planet, 4-osr8, 13, https://doi.org/10.5194/sp-4-osr8-13-2024, https://doi.org/10.5194/sp-4-osr8-13-2024, 2024
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In the summer of 2022, a regional short-term forecasting system was able to predict the onset, spread, peaks, and decay of a record-breaking marine heatwave in the Mediterranean Sea up to 10 d in advance. Satellite data show that the event was record-breaking in terms of basin-wide intensity and duration. This study demonstrates the potential of state-of-the-art forecasting systems to provide early warning of marine heatwaves for marine activities (e.g. conservation and aquaculture).
Bethany McDonagh, Emanuela Clementi, Anna Chiara Goglio, and Nadia Pinardi
Ocean Sci., 20, 1051–1066, https://doi.org/10.5194/os-20-1051-2024, https://doi.org/10.5194/os-20-1051-2024, 2024
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Tides in the Mediterranean Sea are typically of low amplitude, but twin experiments with and without tides demonstrate that tides affect the circulation directly at scales away from those of the tides. Analysis of the energy changes due to tides shows that they enhance existing oscillations, and internal tides interact with other internal waves. Tides also increase the mixed layer depth and enhance deep water formation in key regions. Internal tides are widespread in the Mediterranean Sea.
Roberta Benincasa, Giovanni Liguori, Nadia Pinardi, and Hans von Storch
Ocean Sci., 20, 1003–1012, https://doi.org/10.5194/os-20-1003-2024, https://doi.org/10.5194/os-20-1003-2024, 2024
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Ocean dynamics result from the interplay of internal processes and external inputs, primarily from the atmosphere. It is crucial to discern between these factors to gauge the ocean's intrinsic predictability and to be able to attribute a signal under study to either external factors or internal variability. Employing a simple analysis, we successfully characterized this variability in the Mediterranean Sea and compared it with the oceanic response induced by atmospheric conditions.
Giulia Bonino, Giuliano Galimberti, Simona Masina, Ronan McAdam, and Emanuela Clementi
Ocean Sci., 20, 417–432, https://doi.org/10.5194/os-20-417-2024, https://doi.org/10.5194/os-20-417-2024, 2024
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This study employs machine learning to predict marine heatwaves (MHWs) in the Mediterranean Sea. MHWs have far-reaching impacts on society and ecosystems. Using data from ESA and ECMWF, the research develops accurate prediction models for sea surface temperature (SST) and MHWs across the region. Notably, machine learning methods outperform existing forecasting systems, showing promise in early MHW predictions. The study also highlights the importance of solar radiation as a predictor of SST.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Giovanni Coppini, Emanuela Clementi, Gianpiero Cossarini, Stefano Salon, Gerasimos Korres, Michalis Ravdas, Rita Lecci, Jenny Pistoia, Anna Chiara Goglio, Massimiliano Drudi, Alessandro Grandi, Ali Aydogdu, Romain Escudier, Andrea Cipollone, Vladyslav Lyubartsev, Antonio Mariani, Sergio Cretì, Francesco Palermo, Matteo Scuro, Simona Masina, Nadia Pinardi, Antonio Navarra, Damiano Delrosso, Anna Teruzzi, Valeria Di Biagio, Giorgio Bolzon, Laura Feudale, Gianluca Coidessa, Carolina Amadio, Alberto Brosich, Arnau Miró, Eva Alvarez, Paolo Lazzari, Cosimo Solidoro, Charikleia Oikonomou, and Anna Zacharioudaki
Ocean Sci., 19, 1483–1516, https://doi.org/10.5194/os-19-1483-2023, https://doi.org/10.5194/os-19-1483-2023, 2023
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The paper presents the Mediterranean Forecasting System evolution and performance developed in the framework of the Copernicus Marine Service.
Alban Planchat, Lester Kwiatkowski, Laurent Bopp, Olivier Torres, James R. Christian, Momme Butenschön, Tomas Lovato, Roland Séférian, Matthew A. Chamberlain, Olivier Aumont, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, Tatiana Ilyina, Hiroyuki Tsujino, Kristen M. Krumhardt, Jörg Schwinger, Jerry Tjiputra, John P. Dunne, and Charles Stock
Biogeosciences, 20, 1195–1257, https://doi.org/10.5194/bg-20-1195-2023, https://doi.org/10.5194/bg-20-1195-2023, 2023
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Ocean alkalinity is critical to the uptake of atmospheric carbon and acidification in surface waters. We review the representation of alkalinity and the associated calcium carbonate cycle in Earth system models. While many parameterizations remain present in the latest generation of models, there is a general improvement in the simulated alkalinity distribution. This improvement is related to an increase in the export of biotic calcium carbonate, which closer resembles observations.
Giulia Bonino, Simona Masina, Giuliano Galimberti, and Matteo Moretti
Earth Syst. Sci. Data, 15, 1269–1285, https://doi.org/10.5194/essd-15-1269-2023, https://doi.org/10.5194/essd-15-1269-2023, 2023
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We present a unique observational dataset of marine heat wave (MHW) macroevents and their characteristics over southern Europe and western Asian (SEWA) basins in the SEWA-MHW dataset. This dataset is the first effort in the literature to archive extremely hot sea surface temperature macroevents. The advantages of the availability of SEWA-MHWs are avoiding the waste of computational resources to detect MHWs and building a consistent framework which would increase comparability among MHW studies.
Umesh Pranavam Ayyappan Pillai, Nadia Pinardi, Ivan Federico, Salvatore Causio, Francesco Trotta, Silvia Unguendoli, and Andrea Valentini
Nat. Hazards Earth Syst. Sci., 22, 3413–3433, https://doi.org/10.5194/nhess-22-3413-2022, https://doi.org/10.5194/nhess-22-3413-2022, 2022
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The study presents the application of high-resolution coastal modelling for wave hindcasting on the Emilia-Romagna coastal belt. The generated coastal databases which provide an understanding of the prevailing wind-wave characteristics can aid in predicting coastal impacts.
Giulia Bonino, Doroteaciro Iovino, Laurent Brodeau, and Simona Masina
Geosci. Model Dev., 15, 6873–6889, https://doi.org/10.5194/gmd-15-6873-2022, https://doi.org/10.5194/gmd-15-6873-2022, 2022
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The sea surface temperature (SST) is highly influenced by the transfer of energy driven by turbulent air–sea fluxes (TASFs). In the NEMO ocean general circulation model, TASFs are computed by means of bulk formulas. Bulk formulas require the choice of a given bulk parameterization, which influences the magnitudes of the TASFs. Our results show that parameterization-related SST differences are primarily sensitive to the wind stress differences across parameterizations.
Marco Reale, Gianpiero Cossarini, Paolo Lazzari, Tomas Lovato, Giorgio Bolzon, Simona Masina, Cosimo Solidoro, and Stefano Salon
Biogeosciences, 19, 4035–4065, https://doi.org/10.5194/bg-19-4035-2022, https://doi.org/10.5194/bg-19-4035-2022, 2022
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Future projections under the RCP8.5 and RCP4.5 emission scenarios of the Mediterranean Sea biogeochemistry at the end of the 21st century show different levels of decline in nutrients, oxygen and biomasses and an acidification of the water column. The signal intensity is stronger under RCP8.5 and in the eastern Mediterranean. Under RCP4.5, after the second half of the 21st century, biogeochemical variables show a recovery of the values observed at the beginning of the investigated period.
Giorgio Micaletto, Ivano Barletta, Silvia Mocavero, Ivan Federico, Italo Epicoco, Giorgia Verri, Giovanni Coppini, Pasquale Schiano, Giovanni Aloisio, and Nadia Pinardi
Geosci. Model Dev., 15, 6025–6046, https://doi.org/10.5194/gmd-15-6025-2022, https://doi.org/10.5194/gmd-15-6025-2022, 2022
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The full exploitation of supercomputing architectures requires a deep revision of the current climate models. This paper presents the parallelization of the three-dimensional hydrodynamic model SHYFEM (System of HydrodYnamic Finite Element Modules). Optimized numerical libraries were used to partition the model domain and solve the sparse linear system of equations in parallel. The performance assessment demonstrates a good level of scalability with a realistic configuration used as a benchmark.
Enrico Scoccimarro, Daniele Peano, Silvio Gualdi, Alessio Bellucci, Tomas Lovato, Pier Giuseppe Fogli, and Antonio Navarra
Geosci. Model Dev., 15, 1841–1854, https://doi.org/10.5194/gmd-15-1841-2022, https://doi.org/10.5194/gmd-15-1841-2022, 2022
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This study evaluated the ability of the CMCC-CM2 climate model participating to the last CMIP6 effort, in representing extreme events of precipitation and temperature at the daily and 6-hourly frequencies. The 1/4° resolution version of the atmospheric model provides better results than the version at 1° resolution for temperature extremes, at both time frequencies. For precipitation extremes, especially at the daily time frequency, the higher resolution does not improve model results.
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Short summary
Coastal seas are strongly shaped by complex coastlines, shallow depths, and inputs from rivers, which influence marine life and water quality. This study introduces a new high-resolution modelling system that combines ocean circulation and marine ecosystem processes on unstructured grids. Applied to the northern Adriatic Sea, the model realistically captures seasonal changes in key biogeochemical variables, offering improved tools to support coastal environmental management.
Coastal seas are strongly shaped by complex coastlines, shallow depths, and inputs from rivers,...
