Articles | Volume 18, issue 10
https://doi.org/10.5194/gmd-18-2891-2025
https://doi.org/10.5194/gmd-18-2891-2025
Development and technical paper
 | 
19 May 2025
Development and technical paper |  | 19 May 2025

Positive matrix factorization of large real-time atmospheric mass spectrometry datasets using error-weighted randomized hierarchical alternating least squares

Benjamin C. Sapper, Sean Youn, Daven K. Henze, Manjula Canagaratna, Harald Stark, and Jose L. Jimenez

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Cited articles

Bergstra, J., Breuleux, O., Bastien, F., Lamblin, P., Pascanu, R., Desjardins, G., Turian, J., Warde-Farley, D., and Bengio, Y.: Theano: A CPU and GPU math compiler in Python, Proceedings of the 9th Python in Science Conference, 18–24, https://doi.org/10.25080/Majora-92bf1922-003, 2010. a
Boutsidis, C. and Gallopoulos, E.: SVD based initialization: A head start for nonnegative matrix factorization, Pattern Recognition, 41, 1350–1362, https://doi.org/10.1016/j.patcog.2007.09.010, 2008. a, b
Cichocki, A. and Phan, A.-H.: Fast Local Algorithms for Large Scale Nonnegative Matrix and Tensor Factorizations, IEICE Transactions, 92-A, 708–721, https://doi.org/10.1587/transfun.E92.A.708, 2009. a
Cichocki, A., Zdunek, R., Phan, A. H., and Amari, S.-I.: Alternating Least Squares and Related Algorithms for NMF and SCA Problems, in: Nonnegative Matrix and Tensor Factorizations, chap. 4, John Wiley & Sons, Ltd, 203–266, ISBN 9780470747278, https://doi.org/10.1002/9780470747278.ch4, 2009. a
Eckart, C. and Young, G.: The approximation of one matrix by another of lower rank, Psychometrika, 1, 211–218, https://doi.org/10.1007/BF02288367, 1936. a
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Short summary
Positive matrix factorization (PMF) has been used by atmospheric scientists to extract underlying factors present in large datasets. This paper presents a new technique for error-weighted PMF that drastically reduces the computational costs of previously developed algorithms. We use this technique to deliver interpretable factors and solution diagnostics from an atmospheric chemistry dataset.
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