Articles | Volume 17, issue 6
https://doi.org/10.5194/gmd-17-2325-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-17-2325-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
| 
21 Mar 2024
Development and technical paper |
| 21 Mar 2024
| 21 Mar 2024
Tomofast-x 2.0: an open-source parallel code for inversion of potential field data with topography using wavelet compression
Centre for Exploration Targeting (School of Earth Sciences), The University of Western Australia, 35 Stirling Highway, Crawley, 6009 WA, Australia
Mineral Exploration Cooperative Research Centre, The University of Western Australia, 35 Stirling Highway, Crawley, 6009 WA, Australia
Kim Frankcombe
ExploreGeo, P.O. Box 1191, Wangara DC, 6947 WA, Australia
Taige Liu
ExploreGeo, P.O. Box 1191, Wangara DC, 6947 WA, Australia
Jeremie Giraud
Centre for Exploration Targeting (School of Earth Sciences), The University of Western Australia, 35 Stirling Highway, Crawley, 6009 WA, Australia
Université de Lorraine, CNRS, GeoRessources, 54000 Nancy, France
Roland Martin
Geosciences Environnement Toulouse, CNRS UMR, 5563 Toulouse, France
Mark Jessell
Centre for Exploration Targeting (School of Earth Sciences), The University of Western Australia, 35 Stirling Highway, Crawley, 6009 WA, Australia
Mineral Exploration Cooperative Research Centre, The University of Western Australia, 35 Stirling Highway, Crawley, 6009 WA, Australia
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We review different techniques to model the Earth's subsurface from geophysical data (gravity field anomaly, magnetic field anomaly) using geological models and measurements of the rocks' properties. We show examples of application using idealised examples reproducing realistic features and provide theoretical details of the open-source algorithm we use.
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Evren Pakyuz-Charrier, Mark Jessell, Jérémie Giraud, Mark Lindsay, and Vitaliy Ogarko
Solid Earth, 10, 1663–1684, https://doi.org/10.5194/se-10-1663-2019, https://doi.org/10.5194/se-10-1663-2019, 2019
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Mark Jessell, Jiateng Guo, Yunqiang Li, Mark Lindsay, Richard Scalzo, Jérémie Giraud, Guillaume Pirot, Ed Cripps, and Vitaliy Ogarko
Earth Syst. Sci. Data, 14, 381–392, https://doi.org/10.5194/essd-14-381-2022, https://doi.org/10.5194/essd-14-381-2022, 2022
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the answer. We present a suite of synthetic 3D geological models with their gravity and magnetic responses that allow researchers to test their methods on a whole range of geologically plausible models, thus overcoming one of the fundamental limitations of automation studies.
Ranee Joshi, Kavitha Madaiah, Mark Jessell, Mark Lindsay, and Guillaume Pirot
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We have developed a software that allows the user to extract and standardize drill hole information from legacy datasets and/or different drilling campaigns. It also provides functionality to upscale the lithological information. These functionalities were possible by developing thesauri to identify and group geological terminologies together.
Jérémie Giraud, Vitaliy Ogarko, Roland Martin, Mark Jessell, and Mark Lindsay
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We review different techniques to model the Earth's subsurface from geophysical data (gravity field anomaly, magnetic field anomaly) using geological models and measurements of the rocks' properties. We show examples of application using idealised examples reproducing realistic features and provide theoretical details of the open-source algorithm we use.
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Solid Earth, 12, 2387–2406, https://doi.org/10.5194/se-12-2387-2021, https://doi.org/10.5194/se-12-2387-2021, 2021
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Lachlan Grose, Laurent Ailleres, Gautier Laurent, Guillaume Caumon, Mark Jessell, and Robin Armit
Geosci. Model Dev., 14, 6197–6213, https://doi.org/10.5194/gmd-14-6197-2021, https://doi.org/10.5194/gmd-14-6197-2021, 2021
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Mark Jessell, Vitaliy Ogarko, Yohan de Rose, Mark Lindsay, Ranee Joshi, Agnieszka Piechocka, Lachlan Grose, Miguel de la Varga, Laurent Ailleres, and Guillaume Pirot
Geosci. Model Dev., 14, 5063–5092, https://doi.org/10.5194/gmd-14-5063-2021, https://doi.org/10.5194/gmd-14-5063-2021, 2021
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We have developed software that allows the user to extract sufficient information from unmodified digital maps and associated datasets that we are able to use to automatically build 3D geological models. By automating the process we are able to remove human bias from the procedure, which makes the workflow reproducible.
Lachlan Grose, Laurent Ailleres, Gautier Laurent, and Mark Jessell
Geosci. Model Dev., 14, 3915–3937, https://doi.org/10.5194/gmd-14-3915-2021, https://doi.org/10.5194/gmd-14-3915-2021, 2021
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Jérémie Giraud, Mark Lindsay, Mark Jessell, and Vitaliy Ogarko
Solid Earth, 11, 419–436, https://doi.org/10.5194/se-11-419-2020, https://doi.org/10.5194/se-11-419-2020, 2020
Short summary
Short summary
We propose a methodology for the identification of rock types using geophysical and geological information. It relies on an algorithm used in machine learning called
self-organizing maps, to which we add plausibility filters to ensure that the results respect base geological rules and geophysical measurements. Application in the Yerrida Basin (Western Australia) reveals that the thinning of prospective greenstone belts at depth could be due to deep structures not seen from surface.
Evren Pakyuz-Charrier, Mark Jessell, Jérémie Giraud, Mark Lindsay, and Vitaliy Ogarko
Solid Earth, 10, 1663–1684, https://doi.org/10.5194/se-10-1663-2019, https://doi.org/10.5194/se-10-1663-2019, 2019
Short summary
Short summary
This paper improves the Monte Carlo simulation for uncertainty propagation (MCUP) method for 3-D geological modeling. Topological heterogeneity is observed in the model suite. The study demonstrates that such heterogeneity arises from piecewise nonlinearity inherent to 3-D geological models and contraindicates use of global uncertainty estimation methods. Topological-clustering-driven uncertainty estimation is proposed as a demonstrated alternative to address plausible model heterogeneity.
Jeremie Giraud, Mark Lindsay, Vitaliy Ogarko, Mark Jessell, Roland Martin, and Evren Pakyuz-Charrier
Solid Earth, 10, 193–210, https://doi.org/10.5194/se-10-193-2019, https://doi.org/10.5194/se-10-193-2019, 2019
Short summary
Short summary
We propose the quantitative integration of geology and geophysics in an algorithm integrating the probability of observation of rocks with gravity data to improve subsurface imaging. This allows geophysical modelling to adjust models preferentially in the least certain areas while honouring geological information and geophysical data. We validate our algorithm using an idealized case and apply it to the Yerrida Basin (Australia), where we can recover the geometry of buried greenstone belts.
Evren Pakyuz-Charrier, Mark Lindsay, Vitaliy Ogarko, Jeremie Giraud, and Mark Jessell
Solid Earth, 9, 385–402, https://doi.org/10.5194/se-9-385-2018, https://doi.org/10.5194/se-9-385-2018, 2018
Short summary
Short summary
MCUE is a method that produces probabilistic 3-D geological models by sampling from distributions that represent the uncertainty of the initial input dataset. This process generates numerous plausible datasets used to produce a range of statistically plausible 3-D models which are combined into a single probabilistic model. In this paper, improvements to distribution selection and parameterization for input uncertainty are proposed.
Xiaojun Feng, Enyuan Wang, Jérôme Ganne, Roland Martin, and Mark W. Jessell
Solid Earth Discuss., https://doi.org/10.5194/se-2017-142, https://doi.org/10.5194/se-2017-142, 2018
Preprint withdrawn
J. Florian Wellmann, Sam T. Thiele, Mark D. Lindsay, and Mark W. Jessell
Geosci. Model Dev., 9, 1019–1035, https://doi.org/10.5194/gmd-9-1019-2016, https://doi.org/10.5194/gmd-9-1019-2016, 2016
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We often obtain knowledge about the subsurface in the form of structural geological models, as a basis for subsurface usage or resource extraction. Here, we provide a modelling code to construct such models on the basis of significant deformational events in geological history, encapsulated in kinematic equations. Our methods simplify complex dynamic processes, but enable us to evaluate how events interact, and finally how certain we are about predictions of structures in the subsurface.
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Advanced compression techniques can drastically reduce the size of meteorological datasets (by 5x to 150x) without compromising the data's scientific value. We developed a user-friendly tool called 'enstools-compression' that makes this compression simple for Earth scientists. This tool works seamlessly with common weather and climate data formats. Our work shows that lossy compression can significantly improve how researchers store and analyze large meteorological datasets.
Mohamad Hakam Shams Eddin and Juergen Gall
Geosci. Model Dev., 17, 2987–3023, https://doi.org/10.5194/gmd-17-2987-2024, https://doi.org/10.5194/gmd-17-2987-2024, 2024
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In this study, we use deep learning and a climate simulation to predict the vegetation health as it would be observed from satellites. We found that the developed model can help to identify regions with a high risk of agricultural drought. The main applications of this study are to estimate vegetation products for periods where no satellite data are available and to forecast the future vegetation response to climate change based on climate scenarios.
Jonathan Hobbs, Matthias Katzfuss, Hai Nguyen, Vineet Yadav, and Junjie Liu
Geosci. Model Dev., 17, 1133–1151, https://doi.org/10.5194/gmd-17-1133-2024, https://doi.org/10.5194/gmd-17-1133-2024, 2024
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The cycling of carbon among the land, oceans, and atmosphere is a closely monitored process in the global climate system. These exchanges between the atmosphere and the surface can be quantified using a combination of atmospheric carbon dioxide observations and computer models. This study presents a statistical method for investigating the similarities and differences in the estimated surface–atmosphere carbon exchange when different computer model assumptions are invoked.
Jiateng Guo, Zhibin Liu, Xulei Wang, Lixin Wu, Shanjun Liu, and Yunqiang Li
Geosci. Model Dev., 17, 847–864, https://doi.org/10.5194/gmd-17-847-2024, https://doi.org/10.5194/gmd-17-847-2024, 2024
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This study proposes a 3D and temporally dynamic (4D) geological modeling method. Several simulation and actual cases show that the 4D spatial and temporal evolution of regional geological formations can be modeled easily using this method with smooth boundaries. The 4D modeling system can dynamically present the regional geological evolution process under the timeline, which will be helpful to the research and teaching on the formation of typical and complex geological features.
Catherine O. de Burgh-Day and Tennessee Leeuwenburg
Geosci. Model Dev., 16, 6433–6477, https://doi.org/10.5194/gmd-16-6433-2023, https://doi.org/10.5194/gmd-16-6433-2023, 2023
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Machine learning (ML) is an increasingly popular tool in the field of weather and climate modelling. While ML has been used in this space for a long time, it is only recently that ML approaches have become competitive with more traditional methods. In this review, we have summarized the use of ML in weather and climate modelling over time; provided an overview of key ML concepts, methodologies, and terms; and suggested promising avenues for further research.
Danica L. Lombardozzi, William R. Wieder, Negin Sobhani, Gordon B. Bonan, David Durden, Dawn Lenz, Michael SanClements, Samantha Weintraub-Leff, Edward Ayres, Christopher R. Florian, Kyla Dahlin, Sanjiv Kumar, Abigail L. S. Swann, Claire M. Zarakas, Charles Vardeman, and Valerio Pascucci
Geosci. Model Dev., 16, 5979–6000, https://doi.org/10.5194/gmd-16-5979-2023, https://doi.org/10.5194/gmd-16-5979-2023, 2023
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We present a novel cyberinfrastructure system that uses National Ecological Observatory Network measurements to run Community Terrestrial System Model point simulations in a containerized system. The simple interface and tutorials expand access to data and models used in Earth system research by removing technical barriers and facilitating research, educational opportunities, and community engagement. The NCAR–NEON system enables convergence of climate and ecological sciences.
Qianqian Han, Yijian Zeng, Lijie Zhang, Calimanut-Ionut Cira, Egor Prikaziuk, Ting Duan, Chao Wang, Brigitta Szabó, Salvatore Manfreda, Ruodan Zhuang, and Bob Su
Geosci. Model Dev., 16, 5825–5845, https://doi.org/10.5194/gmd-16-5825-2023, https://doi.org/10.5194/gmd-16-5825-2023, 2023
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Using machine learning, we estimated global surface soil moisture (SSM) to aid in understanding water, energy, and carbon exchange. Ensemble models outperformed individual algorithms in predicting SSM under different climates. The best-performing ensemble included K-neighbours Regressor, Random Forest Regressor, and Extreme Gradient Boosting. This is important for hydrological and climatological applications such as water cycle monitoring, irrigation management, and crop yield prediction.
Xiaoyi Shao, Siyuan Ma, and Chong Xu
Geosci. Model Dev., 16, 5113–5129, https://doi.org/10.5194/gmd-16-5113-2023, https://doi.org/10.5194/gmd-16-5113-2023, 2023
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Scientific understandings of the distribution of coseismic landslides, followed by emergency and medium- and long-term risk assessment, can reduce landslide risk. The aim of this study is to propose an improved three-stage spatial prediction strategy and develop corresponding hazard assessment software called Mat.LShazard V1.0, which provides a new application tool for coseismic landslide disaster prevention and mitigation in different stages.
Junda Zhan, Sensen Wu, Jin Qi, Jindi Zeng, Mengjiao Qin, Yuanyuan Wang, and Zhenhong Du
Geosci. Model Dev., 16, 2777–2794, https://doi.org/10.5194/gmd-16-2777-2023, https://doi.org/10.5194/gmd-16-2777-2023, 2023
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We develop a generalized spatial autoregressive neural network model used for three-dimensional spatial interpolation. Taking the different changing trend of geographic elements along various directions into consideration, the model defines spatial distance in a generalized way and integrates it into the process of spatial interpolation with the theories of spatial autoregression and neural network. Compared with traditional methods, the model achieves better performance and is more adaptable.
Dominikus Heinzeller, Ligia Bernardet, Grant Firl, Man Zhang, Xia Sun, and Michael Ek
Geosci. Model Dev., 16, 2235–2259, https://doi.org/10.5194/gmd-16-2235-2023, https://doi.org/10.5194/gmd-16-2235-2023, 2023
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The Common Community Physics Package is a collection of physical atmospheric parameterizations for use in Earth system models and a framework that couples the physics to a host model’s dynamical core. A primary goal for this effort is to facilitate research and development of physical parameterizations and physics–dynamics coupling methods while offering capabilities for numerical weather prediction operations, for example in the upcoming implementation of the Global Forecast System (GFS) v17.
Tobias Tesch, Stefan Kollet, and Jochen Garcke
Geosci. Model Dev., 16, 2149–2166, https://doi.org/10.5194/gmd-16-2149-2023, https://doi.org/10.5194/gmd-16-2149-2023, 2023
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A recent statistical approach for studying relations in the Earth system is to train deep learning (DL) models to predict Earth system variables given one or several others and use interpretable DL to analyze the relations learned by the models. Here, we propose to combine the approach with a theorem from causality research to ensure that the deep learning model learns causal rather than spurious relations. As an example, we apply the method to study soil-moisture–precipitation coupling.
Yao Hu, Chirantan Ghosh, and Siamak Malakpour-Estalaki
Geosci. Model Dev., 16, 1925–1936, https://doi.org/10.5194/gmd-16-1925-2023, https://doi.org/10.5194/gmd-16-1925-2023, 2023
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Data-driven models (DDMs) gain popularity in earth and environmental systems, thanks in large part to advancements in data collection techniques and artificial intelligence (AI). The performance of these models is determined by the underlying machine learning (ML) algorithms. In this study, we develop a framework to improve the model performance by optimizing ML algorithms and demonstrate the effectiveness of the framework using a DDM to predict edge-of-field runoff in the Maumee domain, USA.
Ruidong Li, Ting Sun, Fuqiang Tian, and Guang-Heng Ni
Geosci. Model Dev., 16, 751–778, https://doi.org/10.5194/gmd-16-751-2023, https://doi.org/10.5194/gmd-16-751-2023, 2023
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We developed SHAFTS (Simultaneous building Height And FootprinT extraction from Sentinel imagery), a multi-task deep-learning-based Python package, to estimate average building height and footprint from Sentinel imagery. Evaluation in 46 cities worldwide shows that SHAFTS achieves significant improvement over existing machine-learning-based methods.
Feng Yin, Philip E. Lewis, and Jose L. Gómez-Dans
Geosci. Model Dev., 15, 7933–7976, https://doi.org/10.5194/gmd-15-7933-2022, https://doi.org/10.5194/gmd-15-7933-2022, 2022
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The proposed SIAC atmospheric correction method provides consistent surface reflectance estimations from medium spatial-resolution satellites (Sentinel 2 and Landsat 8) with per-pixel uncertainty information. The outputs from SIAC have been validated against a wide range of ground measurements, and it shows that SIAC can provide accurate estimations of both surface reflectance and atmospheric parameters, with meaningful uncertainty information.
Martina Stockhause and Michael Lautenschlager
Geosci. Model Dev., 15, 6047–6058, https://doi.org/10.5194/gmd-15-6047-2022, https://doi.org/10.5194/gmd-15-6047-2022, 2022
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The Data Distribution Centre (DDC) of the Intergovernmental Panel on Climate Change (IPCC) celebrates its 25th anniversary in 2022. DDC Partner DKRZ has supported the IPCC Assessments and preserved the quality-assured, citable climate model data underpinning the Assessment Reports over these years over the long term. With the introduction of the IPCC FAIR Guidelines into the current AR6, the value of DDC services has been recognized. However, DDC sustainability remains unresolved.
Daiane Iglesia Dolci, Felipe A. G. Silva, Pedro S. Peixoto, and Ernani V. Volpe
Geosci. Model Dev., 15, 5857–5881, https://doi.org/10.5194/gmd-15-5857-2022, https://doi.org/10.5194/gmd-15-5857-2022, 2022
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We investigate and compare the theoretical and computational characteristics of several absorbing boundary conditions (ABCs) for the full-waveform inversion (FWI) problem. The different ABCs are implemented in an optimized computational framework called Devito. The computational efficiency and memory requirements of the ABC methods are evaluated in the forward and adjoint wave propagators, from simple to realistic velocity models.
Mauro Rossi, Txomin Bornaetxea, and Paola Reichenbach
Geosci. Model Dev., 15, 5651–5666, https://doi.org/10.5194/gmd-15-5651-2022, https://doi.org/10.5194/gmd-15-5651-2022, 2022
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LAND-SUITE is a software package designed to support landslide susceptibility zonation. The software integrates, extends, and completes LAND-SE (Rossi et al., 2010; Rossi and Reichenbach, 2016). The software is implemented in R, a free software environment for statistical computing and graphics, and gives expert users the possibility to perform easier, more flexible, and more informed statistically based landslide susceptibility applications and zonations.
Ashesh Chattopadhyay, Mustafa Mustafa, Pedram Hassanzadeh, Eviatar Bach, and Karthik Kashinath
Geosci. Model Dev., 15, 2221–2237, https://doi.org/10.5194/gmd-15-2221-2022, https://doi.org/10.5194/gmd-15-2221-2022, 2022
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There is growing interest in data-driven weather forecasting, i.e., to predict the weather by using a deep neural network that learns from the evolution of past atmospheric patterns. Here, we propose three components to add to the current data-driven weather forecast models to improve their performance. These components involve a feature that incorporates physics into the neural network, a method to add data assimilation, and an algorithm to use several different time intervals in the forecast.
Paul F. Baumeister and Lars Hoffmann
Geosci. Model Dev., 15, 1855–1874, https://doi.org/10.5194/gmd-15-1855-2022, https://doi.org/10.5194/gmd-15-1855-2022, 2022
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The efficiency of the numerical simulation of radiative transport is shown on modern server-class graphics cards (GPUs). The low-cost prefactor on GPUs compared to general-purpose processors (CPUs) enables future large retrieval campaigns for multi-channel data from infrared sounders aboard low-orbit satellites. The validated research software JURASSIC is available in the public domain.
Gregory E. Tucker, Eric W. H. Hutton, Mark D. Piper, Benjamin Campforts, Tian Gan, Katherine R. Barnhart, Albert J. Kettner, Irina Overeem, Scott D. Peckham, Lynn McCready, and Jaia Syvitski
Geosci. Model Dev., 15, 1413–1439, https://doi.org/10.5194/gmd-15-1413-2022, https://doi.org/10.5194/gmd-15-1413-2022, 2022
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Scientists use computer simulation models to understand how Earth surface processes work, including floods, landslides, soil erosion, river channel migration, ocean sedimentation, and coastal change. Research benefits when the software for simulation modeling is open, shared, and coordinated. The Community Surface Dynamics Modeling System (CSDMS) is a US-based facility that supports research by providing community support, computing tools and guidelines, and educational resources.
Danilo César de Mello, Gustavo Vieira Veloso, Marcos Guedes de Lana, Fellipe Alcantara de Oliveira Mello, Raul Roberto Poppiel, Diego Ribeiro Oquendo Cabrero, Luis Augusto Di Loreto Di Raimo, Carlos Ernesto Gonçalves Reynaud Schaefer, Elpídio Inácio Fernandes Filho, Emilson Pereira Leite, and José Alexandre Melo Demattê
Geosci. Model Dev., 15, 1219–1246, https://doi.org/10.5194/gmd-15-1219-2022, https://doi.org/10.5194/gmd-15-1219-2022, 2022
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We used soil parent material, terrain attributes, and geophysical data from the soil surface to test and compare different and unprecedented geophysical sensor combination, as well as different machine learning algorithms to model and predict several soil attributes. Also, we analyzed the importance of pedoenvironmental variables. The soil attributes were modeled throughout different machine learning algorithms and related to different geophysical sensor combinations.
Duncan Watson-Parris, Andrew Williams, Lucia Deaconu, and Philip Stier
Geosci. Model Dev., 14, 7659–7672, https://doi.org/10.5194/gmd-14-7659-2021, https://doi.org/10.5194/gmd-14-7659-2021, 2021
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The Earth System Emulator (ESEm) provides a fast and flexible framework for emulating a wide variety of Earth science datasets and tools for constraining (or tuning) models of any complexity. Three distinct use cases are presented that demonstrate the utility of ESEm and provide some insight into the use of machine learning for emulation in these different settings. The open-source Python package is freely available so that it might become a valuable tool for the community.
Chongyang Wang, Li Wang, Danni Wang, Dan Li, Chenghu Zhou, Hao Jiang, Qiong Zheng, Shuisen Chen, Kai Jia, Yangxiaoyue Liu, Ji Yang, Xia Zhou, and Yong Li
Geosci. Model Dev., 14, 6833–6846, https://doi.org/10.5194/gmd-14-6833-2021, https://doi.org/10.5194/gmd-14-6833-2021, 2021
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The turbidity maximum zone (TMZ) is a special phenomenon in estuaries worldwide. However, the extraction methods and criteria used to describe the TMZ vary significantly both spatially and temporally. This study proposes an new index, the turbidity maximum zone index, based on the corresponding relationship of total suspended solid concentration and Chl a concentration, which could better extract TMZs in different estuaries and on different dates.
Ranee Joshi, Kavitha Madaiah, Mark Jessell, Mark Lindsay, and Guillaume Pirot
Geosci. Model Dev., 14, 6711–6740, https://doi.org/10.5194/gmd-14-6711-2021, https://doi.org/10.5194/gmd-14-6711-2021, 2021
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We have developed a software that allows the user to extract and standardize drill hole information from legacy datasets and/or different drilling campaigns. It also provides functionality to upscale the lithological information. These functionalities were possible by developing thesauri to identify and group geological terminologies together.
David Meyer, Thomas Nagler, and Robin J. Hogan
Geosci. Model Dev., 14, 5205–5215, https://doi.org/10.5194/gmd-14-5205-2021, https://doi.org/10.5194/gmd-14-5205-2021, 2021
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A major limitation in training machine-learning emulators is often caused by the lack of data. This paper presents a cheap way to increase the size of training datasets using statistical techniques and thereby improve the performance of machine-learning emulators.
Mark Jessell, Vitaliy Ogarko, Yohan de Rose, Mark Lindsay, Ranee Joshi, Agnieszka Piechocka, Lachlan Grose, Miguel de la Varga, Laurent Ailleres, and Guillaume Pirot
Geosci. Model Dev., 14, 5063–5092, https://doi.org/10.5194/gmd-14-5063-2021, https://doi.org/10.5194/gmd-14-5063-2021, 2021
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We have developed software that allows the user to extract sufficient information from unmodified digital maps and associated datasets that we are able to use to automatically build 3D geological models. By automating the process we are able to remove human bias from the procedure, which makes the workflow reproducible.
Martí Bosch, Maxence Locatelli, Perrine Hamel, Roy P. Remme, Jérôme Chenal, and Stéphane Joost
Geosci. Model Dev., 14, 3521–3537, https://doi.org/10.5194/gmd-14-3521-2021, https://doi.org/10.5194/gmd-14-3521-2021, 2021
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The article presents a novel approach to simulate urban heat mitigation from land use/land cover data based on three biophysical mechanisms: tree shade, evapotranspiration and albedo. An automated procedure is proposed to calibrate the model parameters to best fit temperature observations from monitoring stations. A case study in Lausanne, Switzerland, shows that the approach outperforms regressions based on satellite data and provides valuable insights into design heat mitigation policies.
Quang-Van Doan, Hiroyuki Kusaka, Takuto Sato, and Fei Chen
Geosci. Model Dev., 14, 2097–2111, https://doi.org/10.5194/gmd-14-2097-2021, https://doi.org/10.5194/gmd-14-2097-2021, 2021
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This study proposes a novel structural self-organizing map (S-SOM) algorithm. The superiority of S-SOM is that it can better recognize the difference (or similarity) among spatial (or temporal) data used for training and thus improve the clustering quality compared to traditional SOM algorithms.
Batunacun, Ralf Wieland, Tobia Lakes, and Claas Nendel
Geosci. Model Dev., 14, 1493–1510, https://doi.org/10.5194/gmd-14-1493-2021, https://doi.org/10.5194/gmd-14-1493-2021, 2021
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Extreme gradient boosting (XGBoost) can provide alternative insights that conventional land-use models are unable to generate. Shapley additive explanations (SHAP) can interpret the results of the purely data-driven approach. XGBoost achieved similar and robust simulation results. SHAP values were useful for analysing the complex relationship between the different drivers of grassland degradation.
Juan A. Añel, Michael García-Rodríguez, and Javier Rodeiro
Geosci. Model Dev., 14, 923–934, https://doi.org/10.5194/gmd-14-923-2021, https://doi.org/10.5194/gmd-14-923-2021, 2021
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This work shows that it continues to be hard, if not impossible, to obtain some of the most used climate models worldwide. We reach this conclusion through a systematic study and encourage all development teams and research centres to make public the models they use to produce scientific results.
Prabhat, Karthik Kashinath, Mayur Mudigonda, Sol Kim, Lukas Kapp-Schwoerer, Andre Graubner, Ege Karaismailoglu, Leo von Kleist, Thorsten Kurth, Annette Greiner, Ankur Mahesh, Kevin Yang, Colby Lewis, Jiayi Chen, Andrew Lou, Sathyavat Chandran, Ben Toms, Will Chapman, Katherine Dagon, Christine A. Shields, Travis O'Brien, Michael Wehner, and William Collins
Geosci. Model Dev., 14, 107–124, https://doi.org/10.5194/gmd-14-107-2021, https://doi.org/10.5194/gmd-14-107-2021, 2021
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Detecting extreme weather events is a crucial step in understanding how they change due to climate change. Deep learning (DL) is remarkable at pattern recognition; however, it works best only when labeled datasets are available. We create
ClimateNet– an expert-labeled curated dataset – to train a DL model for detecting weather events and predicting changes in extreme precipitation. This work paves the way for DL-based automated, high-fidelity, and highly precise analytics of climate data.
Xiang Que, Xiaogang Ma, Chao Ma, and Qiyu Chen
Geosci. Model Dev., 13, 6149–6164, https://doi.org/10.5194/gmd-13-6149-2020, https://doi.org/10.5194/gmd-13-6149-2020, 2020
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This paper presents a spatiotemporal weighted regression (STWR) model for exploring nonstationary spatiotemporal processes in nature and socioeconomics. A value change rate is introduced in the temporal kernel, which presents significant model fitting and accuracy in both simulated and real-world data. STWR fully incorporates observed data in the past and outperforms geographic temporal weighted regression (GTWR) and geographic weighted regression (GWR) models in several experiments.
Sheri Mickelson, Alice Bertini, Gary Strand, Kevin Paul, Eric Nienhouse, John Dennis, and Mariana Vertenstein
Geosci. Model Dev., 13, 5567–5581, https://doi.org/10.5194/gmd-13-5567-2020, https://doi.org/10.5194/gmd-13-5567-2020, 2020
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Every generation of MIP exercises introduces new layers of complexity and an exponential growth in the amount of data requested. CMIP6 required us to develop a new tool chain and forced us to change our methodologies. The new methods discussed in this paper provided us with an 18 times faster speedup over our existing methods. This allowed us to meet our deadlines and we were able to publish more than half a million data sets on the Earth System Grid Federation (ESGF) for the CMIP6 project.
Benjamin Campforts, Charles M. Shobe, Philippe Steer, Matthias Vanmaercke, Dimitri Lague, and Jean Braun
Geosci. Model Dev., 13, 3863–3886, https://doi.org/10.5194/gmd-13-3863-2020, https://doi.org/10.5194/gmd-13-3863-2020, 2020
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Landslides shape the Earth’s surface and are a dominant source of terrestrial sediment. Rivers, then, act as conveyor belts evacuating landslide-produced sediment. Understanding the interaction among rivers and landslides is important to predict the Earth’s surface response to past and future environmental changes and for mitigating natural hazards. We develop HyLands, a new numerical model that provides a toolbox to explore how landslides and rivers interact over several timescales.
Jorge Vicent, Jochem Verrelst, Neus Sabater, Luis Alonso, Juan Pablo Rivera-Caicedo, Luca Martino, Jordi Muñoz-Marí, and José Moreno
Geosci. Model Dev., 13, 1945–1957, https://doi.org/10.5194/gmd-13-1945-2020, https://doi.org/10.5194/gmd-13-1945-2020, 2020
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The modeling of light propagation through the atmosphere is key to process satellite images and to understand atmospheric processes. However, existing atmospheric models can be complex to use in practical applications. Here we aim at providing a new software tool to facilitate using advanced models and to generate large databases of simulated data. As a test case, we use this tool to analyze differences between several atmospheric models, showing the capabilities of this open-source tool.
Jiali Wang, Prasanna Balaprakash, and Rao Kotamarthi
Geosci. Model Dev., 12, 4261–4274, https://doi.org/10.5194/gmd-12-4261-2019, https://doi.org/10.5194/gmd-12-4261-2019, 2019
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Parameterizations are frequently used in models representing physical phenomena and are often the computationally expensive portions of the code. Using model output from simulations performed using a weather model, we train deep neural networks to provide an accurate alternative to a physics-based parameterization. We demonstrate that a domain-aware deep neural network can successfully simulate the entire diurnal cycle of the boundary layer physics and the results are transferable.
Gianandrea Mannarini and Lorenzo Carelli
Geosci. Model Dev., 12, 3449–3480, https://doi.org/10.5194/gmd-12-3449-2019, https://doi.org/10.5194/gmd-12-3449-2019, 2019
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The VISIR ship-routing model is updated in order to deal with ocean currents.
The optimal tracks we computed through VISIR in the Atlantic ocean show great seasonal and regional variability, following a variable influence of surface gravity waves and currents. We assess how these tracks contribute to voyage energy-efficiency gains through a standard indicator (EEOI) of the International Maritime Organization. Also, the new model features are validated against an exact analytical benchmark.
Grzegorz Muszynski, Karthik Kashinath, Vitaliy Kurlin, Michael Wehner, and Prabhat
Geosci. Model Dev., 12, 613–628, https://doi.org/10.5194/gmd-12-613-2019, https://doi.org/10.5194/gmd-12-613-2019, 2019
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We present the automated method for recognizing atmospheric rivers in climate data, i.e., climate model output and reanalysis product. The method is based on topological data analysis and machine learning, both of which are powerful tools that the climate science community often does not use. An advantage of the proposed method is that it is free of selection of subjective threshold conditions on a physical variable. This method is also suitable for rapidly analyzing large amounts of data.
Christina Papagiannopoulou, Diego G. Miralles, Matthias Demuzere, Niko E. C. Verhoest, and Willem Waegeman
Geosci. Model Dev., 11, 4139–4153, https://doi.org/10.5194/gmd-11-4139-2018, https://doi.org/10.5194/gmd-11-4139-2018, 2018
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Common global land cover and climate classifications are based on vegetation–climatic characteristics derived from observational data, ignoring the interaction between the local climate and biome. Here, we model the interplay between vegetation and local climate by discovering spatial relationships among different locations. The resulting global
hydro-climatic biomescorrespond to regions of coherent climate–vegetation interactions that agree well with traditional global land cover maps.
Wendy Sharples, Ilya Zhukov, Markus Geimer, Klaus Goergen, Sebastian Luehrs, Thomas Breuer, Bibi Naz, Ketan Kulkarni, Slavko Brdar, and Stefan Kollet
Geosci. Model Dev., 11, 2875–2895, https://doi.org/10.5194/gmd-11-2875-2018, https://doi.org/10.5194/gmd-11-2875-2018, 2018
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Next-generation geoscientific models are based on complex model implementations and workflows. Next-generation HPC systems require new programming paradigms and code optimization. In order to meet the challenge of running complex simulations on new massively parallel HPC systems, we developed a run control framework that facilitates code portability, code profiling, and provenance tracking to reduce both the duration and the cost of code migration and development, while ensuring reproducibility.
Daojun Zhang, Na Ren, and Xianhui Hou
Geosci. Model Dev., 11, 2525–2539, https://doi.org/10.5194/gmd-11-2525-2018, https://doi.org/10.5194/gmd-11-2525-2018, 2018
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Geographically weighted regression is a widely used method to deal with spatial heterogeneity, which is common in geostatistics. However, most existing software does not support logistic regression and cannot deal with missing data, which exist extensively in mineral prospectivity mapping. This work generalized logistic regression to spatial statistics based on a spatially weighted technique. The new model also supports an anisotropic local window, which is another innovative point.
Thomas Block, Sabine Embacher, Christopher J. Merchant, and Craig Donlon
Geosci. Model Dev., 11, 2419–2427, https://doi.org/10.5194/gmd-11-2419-2018, https://doi.org/10.5194/gmd-11-2419-2018, 2018
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For calibration and validation purposes it is necessary to detect simultaneous data acquisitions from different spaceborne platforms. We present an algorithm and a software system which implements a general approach to resolve this problem. The multisensor matchup system (MMS) can detect simultaneous acquisitions in a large dataset (> 100 TB) and extract data for matching locations for further analysis. The MMS implements a flexible software infrastructure and allows for high parallelization.
David Hassell, Jonathan Gregory, Jon Blower, Bryan N. Lawrence, and Karl E. Taylor
Geosci. Model Dev., 10, 4619–4646, https://doi.org/10.5194/gmd-10-4619-2017, https://doi.org/10.5194/gmd-10-4619-2017, 2017
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We present a formal data model for version 1.6 of the CF (Climate and Forecast) metadata conventions that provide a description of the physical meaning of geoscientific data and their spatial and temporal properties. We describe the CF conventions and how they lead to our CF data model, and compare it other data models for storing data and metadata. We present cf-python version 2.1: a software implementation of the CF data model capable of manipulating any CF-compliant dataset.
Iulia Ilie, Peter Dittrich, Nuno Carvalhais, Martin Jung, Andreas Heinemeyer, Mirco Migliavacca, James I. L. Morison, Sebastian Sippel, Jens-Arne Subke, Matthew Wilkinson, and Miguel D. Mahecha
Geosci. Model Dev., 10, 3519–3545, https://doi.org/10.5194/gmd-10-3519-2017, https://doi.org/10.5194/gmd-10-3519-2017, 2017
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Accurate representation of land-atmosphere carbon fluxes is essential for future climate projections, although some of the responses of CO2 fluxes to climate often remain uncertain. The increase in available data allows for new approaches in their modelling. We automatically developed models for ecosystem and soil carbon respiration using a machine learning approach. When compared with established respiration models, we found that they are better in prediction as well as offering new insights.
Xinqiao Duan, Lin Li, Haihong Zhu, and Shen Ying
Geosci. Model Dev., 10, 239–253, https://doi.org/10.5194/gmd-10-239-2017, https://doi.org/10.5194/gmd-10-239-2017, 2017
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This article proposes an optimized transformation for topographic datasets. The resulting topographic grid exhibits good surface approximation and quasi-uniform high-quality. Both features of the processed topography build a concrete base from which improved endogenous or exogenous parameters can be derived, and makes it suitable for Earth and environmental simulations.
Cited articles
Banaszczyk, S., Dentith, M., and Wallace, Y.: Constrained Magnetic Modelling of the Wallaby Gold Deposit, Western Australia, ASEG Extended Abstracts, 2015, 1–4, https://doi.org/10.1071/ASEG2015ab290, 2015.
Barrett, R., Berry, M., Chan, T. F., Demmel, J., Donato, J., Dongarra, J., Eijkhout, V., Pozo, R., Romine, C., and van der Vorst, H.: Templates for the Solution of Linear Systems: Building Blocks for Iterative Methods, Society for Industrial and Applied Mathematics, https://doi.org/10.1137/1.9781611971538, 1994.
Bhattacharyya, B. K.: MAGNETIC ANOMALIES DUE TO PRISM-SHAPED BODIES WITH ARBITRARY POLARIZATION, GEOPHYSICS, 29, 517–531, https://doi.org/10.1190/1.1439386, 1964.
Buluc, A. and Gilbert, J. R.: On the representation and multiplication of hypersparse matrices, in: 2008 IEEE International Symposium on Parallel and Distributed Processing, Miami, FL, USA, 14–18 April 2008, 1–11, https://doi.org/10.1109/IPDPS.2008.4536313, 2008.
Buluç, A., Fineman, J. T., Frigo, M., Gilbert, J. R., and Leiserson, C. E.: Parallel sparse matrix-vector and matrix-transpose-vector multiplication using compressed sparse blocks, in: Proceedings of the twenty-first annual symposium on Parallelism in algorithms and architectures, Calgary, AB, Canada, 11–13 August 2009, 233–244, https://doi.org/10.1145/1583991.1584053, 2009.
Cockett, R., Kang, S., Heagy, L. J., Pidlisecky, A., and Oldenburg, D. W.: SimPEG: An open source framework for simulation and gradient based parameter estimation in geophysical applications, Comput. Geosci., 85, 142–154, https://doi.org/10.1016/j.cageo.2015.09.015, 2015.
Coggon, J.: Magnetism — key to the Wallaby gold deposit, Explor. Geophys., 34, 125–130, https://doi.org/10.1071/EG03125, 2003.
Elllis, R. G., de Wet, B., and Macleod, I. N.: Inversion of Magnetic Data from Remanent and Induced Sources, ASEG Extended Abstracts, 2012, 1–4, https://doi.org/10.1071/ASEG2012ab117, 2012.
Frankcombe, K.: Magnetics in the mountains: An approximation for the magnetic response from topography, Preview, 2020, 34–44, https://doi.org/10.1080/14432471.2020.1773235, 2020.
Gidley, P. R.: The Geophysics of the Trough Tank Gold-Copper Prospect, Australia, Explor. Geophys., 19, 76–78, https://doi.org/10.1071/EG988076, 1988.
Giraud, J., Lindsay, M., Ogarko, V., Jessell, M., Martin, R., and Pakyuz-Charrier, E.: Integration of geoscientific uncertainty into geophysical inversion by means of local gradient regularization, Solid Earth, 10, 193–210, https://doi.org/10.5194/se-10-193-2019, 2019a.
Giraud, J., Ogarko, V., Lindsay, M., Pakyuz-Charrier, E., Jessell, M., and Martin, R.: Sensitivity of constrained joint inversions to geological and petrophysical input data uncertainties with posterior geological analysis, Geophys. J. Int., 218, 666–688, https://doi.org/10.1093/gji/ggz152, 2019b.
Giraud, J., Lindsay, M., Jessell, M., and Ogarko, V.: Towards plausible lithological classification from geophysical inversion: honouring geological principles in subsurface imaging, Solid Earth, 11, 419–436, https://doi.org/10.5194/se-11-419-2020, 2020.
Giraud, J., Ogarko, V., Martin, R., Jessell, M., and Lindsay, M.: Structural, petrophysical, and geological constraints in potential field inversion using the Tomofast-x v1.0 open-source code, Geosci. Model Dev., 14, 6681–6709, https://doi.org/10.5194/gmd-14-6681-2021, 2021.
Giraud, J., Caumon, G., Grose, L., Ogarko, V., and Cupillard, P.: Integration of automatic implicit geological modelling in deterministic geophysical inversion, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2023-129, 2023a.
Giraud, J., Seillé, H., Lindsay, M. D., Visser, G., Ogarko, V., and Jessell, M. W.: Utilisation of probabilistic magnetotelluric modelling to constrain magnetic data inversion: proof-of-concept and field application, Solid Earth, 14, 43–68, https://doi.org/10.5194/se-14-43-2023, 2023b.
Goodwin, J. A., Lane, R. J. L.: The North Australian Craton 3D Gravity and Magnetic Inversion Models – A trial for first pass modelling of the entire Australian continent, RECORD 2021/033, Geoscience Australia, Canberra, https://doi.org/10.11636/Record.2021.033, 2021.
Jessell, M.: Three-dimensional geological modelling of potential-field data, Comput. Geosci., 27, 455–465, https://doi.org/10.1016/S0098-3004(00)00142-4, 2001.
Li, Y. and Oldenburg, D. W.: 3-D inversion of magnetic data, GEOPHYSICS, 61, 394–408, https://doi.org/10.1190/1.1443968, 1996a.
Li, Y. and Oldenburg, D. W.: Joint inversion of surface and three-component borehole magnetic data, SEG Technical Program Expanded Abstracts 1996, 1142–1145, https://doi.org/10.1190/1.1826293, 1996b.
Li, Y. and Oldenburg, D. W.: 3-D inversion of gravity data, GEOPHYSICS, 63, 109–119, https://doi.org/10.1190/1.1444302, 1998.
Li, Y. and Oldenburg, D. W.: Fast inversion of large-scale magnetic data using wavelet transforms and a logarithmic barrier method, Geophys. J. Int., 152, 251–265, https://doi.org/10.1046/j.1365-246X.2003.01766.x, 2003.
Liu, S., Hu, X., Zhang, H., Geng, M., and Zuo, B.: 3D Magnetization Vector Inversion of Magnetic Data: Improving and Comparing Methods, Pure Appl. Geophys., 174, 4421–4444, https://doi.org/10.1007/s00024-017-1654-3, 2017.
Markus, A.: Modern Fortran in Practice, Cambridge University Press, https://doi.org/10.1017/CBO9781139084796, 2012.
Martin, R., Monteiller, V., Komatitsch, D., Perrouty, S., Jessell, M., Bonvalot, S., and Lindsay, M.: Gravity inversion using wavelet-based compression on parallel hybrid CPU/GPU systems: application to southwest Ghana, Geophys. J. Int., 195, 1594–1619, https://doi.org/10.1093/gji/ggt334, 2013.
Martin, R., Ogarko, V., Komatitsch, D., and Jessell, M.: Parallel three-dimensional electrical capacitance data imaging using a nonlinear inversion algorithm and norm-based model regularization, Measurement, 128, 428–445, https://doi.org/10.1016/j.measurement.2018.05.099, 2018.
Martin, R., Giraud, J., Ogarko, V., Chevrot, S., Beller, S., Gégout, P., and Jessell, M.: Three-dimensional gravity anomaly data inversion in the Pyrenees using compressional seismic velocity model as structural similarity constraints, Geophys. J. Int., 225, 1063–1085, https://doi.org/10.1093/gji/ggaa414, 2021.
Nettleton, L. L.: GRAVITY AND MAGNETIC CALCULATIONS, GEOPHYSICS, 7, 293–310, https://doi.org/10.1190/1.1445015, 1942.
Ogarko, V., Giraud, J., Martin, R., and Jessell, M.: Disjoint interval bound constraints using the alternating direction method of multipliers for geologically constrained inversion: Application to gravity data, GEOPHYSICS, 86, G1–G11, https://doi.org/10.1190/geo2019-0633.1, 2021.
Ogarko, V., Frankcombe, K., and Liu, T.: Callisto and Synthetic400 inversion data sets, Zenodo [data set], https://doi.org/10.5281/zenodo.8397794, 2023a.
Ogarko, V., Frankcombe, K., Liu, T., Giraud, J., Martin, R., and Jessell, M.: Tomofast-x 2.0 inversion source code, Zenodo [code], https://doi.org/10.5281/zenodo.8397948, 2023b.
Özgü Arısoy, M. and Dikmen, Ü.: Potensoft: MATLAB-based software for potential field data processing, modeling and mapping, Comput. Geosci., 37, 935–942, https://doi.org/10.1016/j.cageo.2011.02.008, 2011.
Paige, C. C. and Saunders, M. A.: LSQR: An Algorithm for Sparse Linear Equations and Sparse Least Squares, ACM T. Math. Software, 8, 43–71, https://doi.org/10.1145/355984.355989, 1982.
Pears, G., Reid, J., Chalke, T., Tschirhart, V., and Thomas, M. D.: Advances in geologically constrained modelling and inversion strategies to drive integrated interpretation in mineral exploration, in: Proceedings of Exploration 17: Sixth Decennial International Conference on Mineral Exploration, edited by: Tschirhart, V. and Thomas, M. D., 221–238, 2017.
Vallabh Sharma, P.: Rapid computation of magnetic anomalies and demagnetization effects caused by bodies of arbitrary shape, Pure Appl. Geophys., 64, 89–109, https://doi.org/10.1007/BF00875535, 1966.
Short summary
We present a major release of the Tomofast-x open-source gravity and magnetic inversion code that is enhancing its performance and applicability for both industrial and academic studies. We focus on real-world mineral exploration scenarios, while offering flexibility for applications at regional scale or for crustal studies. The optimisation work described in this paper is fundamental to allowing more complete descriptions of the controls on magnetisation, including remanence.
We present a major release of the Tomofast-x open-source gravity and magnetic inversion code...
