Articles | Volume 16, issue 22
https://doi.org/10.5194/gmd-16-6609-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-16-6609-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
A diffusion-based kernel density estimator (diffKDE, version 1) with optimal bandwidth approximation for the analysis of data in geoscience and ecological research
Maria-Theresia Pelz
Department of Computer Science, Kiel University, 24118 Kiel, Germany
Research Unit Biogeochemical Modelling, GEOMAR Helmholtz Centre for Ocean Research Kiel, 24105 Kiel, Germany
Research Unit Biogeochemical Modelling, GEOMAR Helmholtz Centre for Ocean Research Kiel, 24105 Kiel, Germany
Christopher J. Somes
Research Unit Biogeochemical Modelling, GEOMAR Helmholtz Centre for Ocean Research Kiel, 24105 Kiel, Germany
Vanessa Lampe
Research Unit Biogeochemical Modelling, GEOMAR Helmholtz Centre for Ocean Research Kiel, 24105 Kiel, Germany
Thomas Slawig
CORRESPONDING AUTHOR
Department of Computer Science, Kiel University, 24118 Kiel, Germany
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Maria-Theresia Verwega, Christopher J. Somes, Markus Schartau, Robyn Elizabeth Tuerena, Anne Lorrain, Andreas Oschlies, and Thomas Slawig
Earth Syst. Sci. Data, 13, 4861–4880, https://doi.org/10.5194/essd-13-4861-2021, https://doi.org/10.5194/essd-13-4861-2021, 2021
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This work describes a ready-to-use collection of particulate organic carbon stable isotope ratio data sets. It covers the 1960s–2010s and all main oceans, providing meta-information and gridded data. The best coverage exists in Atlantic, Indian and Southern Ocean surface waters during the 1990s. It indicates no major difference between methods and shows decreasing values towards high latitudes, with the lowest in the Southern Ocean, and a long-term decline in all regions but the Southern Ocean.
Na Li, Christopher J. Somes, Angela Landolfi, Chia-Te Chien, Markus Pahlow, and Andreas Oschlies
Biogeosciences, 21, 4361–4380, https://doi.org/10.5194/bg-21-4361-2024, https://doi.org/10.5194/bg-21-4361-2024, 2024
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N is a crucial nutrient that limits phytoplankton growth in large ocean areas. The amount of oceanic N is governed by the balance of N2 fixation and denitrification. Here we incorporate benthic denitrification into an Earth system model with variable particulate stoichiometry. Our model compares better to the observed surface nutrient distributions, marine N2 fixation, and primary production. Benthic denitrification plays an important role in marine N and C cycling and hence the global climate.
Niko Schmidt, Angelika Humbert, and Thomas Slawig
Geosci. Model Dev., 17, 4943–4959, https://doi.org/10.5194/gmd-17-4943-2024, https://doi.org/10.5194/gmd-17-4943-2024, 2024
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Future sea-level rise is of big significance for coastal regions. The melting and acceleration of glaciers plays a major role in sea-level change. Computer simulation of glaciers costs a lot of computational resources. In this publication, we test a new way of simulating glaciers. This approach produces the same results but has the advantage that it needs much less computation time. As simulations can be obtained with fewer computation resources, higher resolution and physics become affordable.
Babette Hoogakker, Catherine Davis, Yi Wang, Stepanie Kusch, Katrina Nilsson-Kerr, Dalton Hardisty, Allison Jacobel, Dharma Reyes Macaya, Nicolaas Glock, Sha Ni, Julio Sepúlveda, Abby Ren, Alexandra Auderset, Anya Hess, Katrina Meissner, Jorge Cardich, Robert Anderson, Christine Barras, Chandranath Basak, Harold Bradbury, Inda Brinkmann, Alexis Castillo, Madelyn Cook, Kassandra Costa, Constance Choquel, Paula Diz, Jonas Donnenfield, Felix Elling, Zeynep Erdem, Helena Filipsson, Sebastian Garrido, Julia Gottschalk, Anjaly Govindankutty Menon, Jeroen Groeneveld, Christian Hallman, Ingrid Hendy, Rick Hennekam, Wanyi Lu, Jean Lynch-Stieglitz, Lelia Matos, Alfredo Martínez-García, Giulia Molina, Práxedes Muñoz, Simone Moretti, Jennifer Morford, Sophie Nuber, Svetlana Radionovskaya, Morgan Raven, Christopher Somes, Anja Studer, Kazuyo Tachikawa, Raúl Tapia, Martin Tetard, Tyler Vollmer, Shuzhuang Wu, Yan Zhang, Xin-Yuan Zheng, and Yuxin Zhou
EGUsphere, https://doi.org/10.5194/egusphere-2023-2981, https://doi.org/10.5194/egusphere-2023-2981, 2024
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Paleo-oxygen proxies can extend current records, bound pre-anthropogenic baselines, provide datasets necessary to test climate models under different boundary conditions, and ultimately understand how ocean oxygenation responds on longer timescales. Here we summarize current proxies used for the reconstruction of Cenozoic seawater oxygen levels. This includes an overview of the proxy's history, how it works, resources required, limitations, and future recommendations.
Christoph Heinze, Thorsten Blenckner, Peter Brown, Friederike Fröb, Anne Morée, Adrian L. New, Cara Nissen, Stefanie Rynders, Isabel Seguro, Yevgeny Aksenov, Yuri Artioli, Timothée Bourgeois, Friedrich Burger, Jonathan Buzan, B. B. Cael, Veli Çağlar Yumruktepe, Melissa Chierici, Christopher Danek, Ulf Dieckmann, Agneta Fransson, Thomas Frölicher, Giovanni Galli, Marion Gehlen, Aridane G. González, Melchor Gonzalez-Davila, Nicolas Gruber, Örjan Gustafsson, Judith Hauck, Mikko Heino, Stephanie Henson, Jenny Hieronymus, I. Emma Huertas, Fatma Jebri, Aurich Jeltsch-Thömmes, Fortunat Joos, Jaideep Joshi, Stephen Kelly, Nandini Menon, Precious Mongwe, Laurent Oziel, Sólveig Ólafsdottir, Julien Palmieri, Fiz F. Pérez, Rajamohanan Pillai Ranith, Juliano Ramanantsoa, Tilla Roy, Dagmara Rusiecka, J. Magdalena Santana Casiano, Yeray Santana-Falcón, Jörg Schwinger, Roland Séférian, Miriam Seifert, Anna Shchiptsova, Bablu Sinha, Christopher Somes, Reiner Steinfeldt, Dandan Tao, Jerry Tjiputra, Adam Ulfsbo, Christoph Völker, Tsuyoshi Wakamatsu, and Ying Ye
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-182, https://doi.org/10.5194/bg-2023-182, 2023
Preprint under review for BG
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For assessing the consequences of human-induced climate change for the marine realm, it is necessary to not only look at gradual changes but also at abrupt changes of environmental conditions. We summarise abrupt changes in ocean warming, acidification, and oxygen concentration as the key environmental factors for ecosystems. Taking these abrupt changes into account requires greenhouse gas emissions to be reduced to a larger extent than previously thought to limit respective damage.
Iris Kriest, Julia Getzlaff, Angela Landolfi, Volkmar Sauerland, Markus Schartau, and Andreas Oschlies
Biogeosciences, 20, 2645–2669, https://doi.org/10.5194/bg-20-2645-2023, https://doi.org/10.5194/bg-20-2645-2023, 2023
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Global biogeochemical ocean models are often subjectively assessed and tuned against observations. We applied different strategies to calibrate a global model against observations. Although the calibrated models show similar tracer distributions at the surface, they differ in global biogeochemical fluxes, especially in global particle flux. Simulated global volume of oxygen minimum zones varies strongly with calibration strategy and over time, rendering its temporal extrapolation difficult.
Markus Pfeil and Thomas Slawig
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2021-392, https://doi.org/10.5194/gmd-2021-392, 2022
Revised manuscript not accepted
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In investigating the global carbon cycle, shortening the runtime of the simulation of marine ecosystem models is an important issue. We present methods that automatically adjust the time step during the simulation of a steady state using transport matrices. They apply always the time step as large as possible. Two methods reduced the runtime significantly, depending on the complexity of the model. An important property was that small negative concentrations were ignored during the spin-up.
Karin Kvale, David P. Keller, Wolfgang Koeve, Katrin J. Meissner, Christopher J. Somes, Wanxuan Yao, and Andreas Oschlies
Geosci. Model Dev., 14, 7255–7285, https://doi.org/10.5194/gmd-14-7255-2021, https://doi.org/10.5194/gmd-14-7255-2021, 2021
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We present a new model of biological marine silicate cycling for the University of Victoria Earth System Climate Model (UVic ESCM). This new model adds diatoms, which are a key aspect of the biological carbon pump, to an existing ecosystem model. Our modifications change how the model responds to warming, with net primary production declining more strongly than in previous versions. Diatoms in particular are simulated to decline with climate warming due to their high nutrient requirements.
Maria-Theresia Verwega, Christopher J. Somes, Markus Schartau, Robyn Elizabeth Tuerena, Anne Lorrain, Andreas Oschlies, and Thomas Slawig
Earth Syst. Sci. Data, 13, 4861–4880, https://doi.org/10.5194/essd-13-4861-2021, https://doi.org/10.5194/essd-13-4861-2021, 2021
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This work describes a ready-to-use collection of particulate organic carbon stable isotope ratio data sets. It covers the 1960s–2010s and all main oceans, providing meta-information and gridded data. The best coverage exists in Atlantic, Indian and Southern Ocean surface waters during the 1990s. It indicates no major difference between methods and shows decreasing values towards high latitudes, with the lowest in the Southern Ocean, and a long-term decline in all regions but the Southern Ocean.
Chia-Te Chien, Markus Pahlow, Markus Schartau, and Andreas Oschlies
Geosci. Model Dev., 13, 4691–4712, https://doi.org/10.5194/gmd-13-4691-2020, https://doi.org/10.5194/gmd-13-4691-2020, 2020
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We demonstrate sensitivities of tracers to parameters of a new optimality-based plankton–ecosystem model (OPEM) in the UVic-ESCM. We find that changes in phytoplankton subsistence nitrogen quota strongly impact the nitrogen inventory, nitrogen fixation, and elemental stoichiometry of ordinary phytoplankton and diazotrophs. We introduce a new likelihood-based metric for model calibration, and it shows the capability of constraining globally averaged oxygen, nitrate, and DIC concentrations.
Sabine Mathesius, Julia Getzlaff, Heiner Dietze, Andreas Oschlies, and Markus Schartau
Earth Syst. Sci. Data, 12, 1775–1787, https://doi.org/10.5194/essd-12-1775-2020, https://doi.org/10.5194/essd-12-1775-2020, 2020
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Controlled manipulation of environmental conditions within large enclosures in the ocean, pelagic mesocosms, has become a standard method to explore responses of marine plankton communities to anthropogenic change. Among the challenges of interpreting mesocosm data is the often uncertain role of vertical mixing. This study introduces a mesocosm mixing model that is able to estimate vertical diffusivities and thus provides a tool for future mesocosm data analyses that account for mixing.
Alessandro Cotronei and Thomas Slawig
Geosci. Model Dev., 13, 2783–2804, https://doi.org/10.5194/gmd-13-2783-2020, https://doi.org/10.5194/gmd-13-2783-2020, 2020
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We converted the radiation part of the atmospheric model ECHAM to single-precision arithmetic, using a step-by-step change in all modules. A small code portion still requires higher precision. The generated code can be easily changed from double to single precision and vice versa. The quality of the output of the single-precision version is comparable to observational data and the one of the original code. The runtime was reduced by 40 %, and the energy consumption could also be decreased.
Maria Moreno de Castro, Markus Schartau, and Kai Wirtz
Biogeosciences, 14, 1883–1901, https://doi.org/10.5194/bg-14-1883-2017, https://doi.org/10.5194/bg-14-1883-2017, 2017
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Observations from different mesocosms exposed to the same treatment level typically show variability that hinders the detection of potential treatments effects. To unearth relevant sources of variability, we developed and performed a data-based model analysis that simulates uncertainty propagation. With this method we investigate the divergence in the outcomes due to the amplification of differences in experimentally unresolved ecological factors within replicates of the same treatment level.
Shubham Krishna and Markus Schartau
Biogeosciences, 14, 1857–1882, https://doi.org/10.5194/bg-14-1857-2017, https://doi.org/10.5194/bg-14-1857-2017, 2017
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This study combines experimental data with results from numerical modelling. Data of an ocean acidification mesocosm experiment are used to constrain parameter values of a plankton model. Three different intensities of calcification are resolved with ensembles of optimised model results. Observed variability in data can be well explained by these ensemble model solutions. The simulated ocean acidification effect on calcification is small compared to the spread of the ensemble model solutions.
Markus Schartau, Philip Wallhead, John Hemmings, Ulrike Löptien, Iris Kriest, Shubham Krishna, Ben A. Ward, Thomas Slawig, and Andreas Oschlies
Biogeosciences, 14, 1647–1701, https://doi.org/10.5194/bg-14-1647-2017, https://doi.org/10.5194/bg-14-1647-2017, 2017
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Plankton models have become an integral part in marine ecosystem and biogeochemical research. These models differ in complexity and in their number of parameters. How values are assigned to parameters is essential. An overview of major methodologies of parameter estimation is provided. Aspects of parameter identification in the literature are diverse. Individual findings could be better synthesized if notation and expertise of the different scientific communities would be reasonably merged.
Jaroslaw Piwonski and Thomas Slawig
Geosci. Model Dev., 9, 3729–3750, https://doi.org/10.5194/gmd-9-3729-2016, https://doi.org/10.5194/gmd-9-3729-2016, 2016
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In order to fundamentally tackle the problem of parameter identification for marine ecosystem models in 3-D, we introduced a general biogeochemical programming interface that fits into the optimization context. Moreover, we implemented a comprehensive parallel solver software for periodic steady states that uses the interface to couple marine ecosystem models to a transport matrix driver. We validated the new implementation using a hierarchy of biogeochemical models.
J. Reimer, M. Schuerch, and T. Slawig
Geosci. Model Dev., 8, 791–804, https://doi.org/10.5194/gmd-8-791-2015, https://doi.org/10.5194/gmd-8-791-2015, 2015
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Model parameters are usually optimized based on measurements. These measurements are often time-consuming or costly. The conditions under which theses measurements are carried out, also called experimental designs, can be optimized so that with minimum effort and cost a maximum accuracy can be achieved. For this, we present different approaches together with their implementation in an MATLAB toolbox. We demonstrate their application to different models for sedimentation in salt marshes.
C. J. Somes, A. Oschlies, and A. Schmittner
Biogeosciences, 10, 5889–5910, https://doi.org/10.5194/bg-10-5889-2013, https://doi.org/10.5194/bg-10-5889-2013, 2013
M. El Jarbi, J. Rückelt, T. Slawig, and A. Oschlies
Biogeosciences, 10, 1169–1182, https://doi.org/10.5194/bg-10-1169-2013, https://doi.org/10.5194/bg-10-1169-2013, 2013
E. Siewertsen, J. Piwonski, and T. Slawig
Geosci. Model Dev., 6, 17–28, https://doi.org/10.5194/gmd-6-17-2013, https://doi.org/10.5194/gmd-6-17-2013, 2013
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Geosci. Model Dev., 18, 161–180, https://doi.org/10.5194/gmd-18-161-2025, https://doi.org/10.5194/gmd-18-161-2025, 2025
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Geosci. Model Dev., 17, 8989–9021, https://doi.org/10.5194/gmd-17-8989-2024, https://doi.org/10.5194/gmd-17-8989-2024, 2024
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Geosci. Model Dev., 17, 8873–8884, https://doi.org/10.5194/gmd-17-8873-2024, https://doi.org/10.5194/gmd-17-8873-2024, 2024
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Geosci. Model Dev., 17, 8665–8681, https://doi.org/10.5194/gmd-17-8665-2024, https://doi.org/10.5194/gmd-17-8665-2024, 2024
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We evaluate downscaled products by examining locally relevant co-variances during precipitation events. Common statistical downscaling techniques preserve expected co-variances during convective precipitation (a stationary phenomenon). However, they dampen future intensification of frontal precipitation (a non-stationary phenomenon) captured in global climate models and dynamical downscaling. Our study quantifies a ramification of the stationarity assumption underlying statistical downscaling.
Emmanuel Nyenah, Petra Döll, Daniel S. Katz, and Robert Reinecke
Geosci. Model Dev., 17, 8593–8611, https://doi.org/10.5194/gmd-17-8593-2024, https://doi.org/10.5194/gmd-17-8593-2024, 2024
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Research software is vital for scientific progress but is often developed by scientists with limited skills, time, and funding, leading to challenges in usability and maintenance. Our study across 10 sectors shows strengths in version control, open-source licensing, and documentation while emphasizing the need for containerization and code quality. We recommend workshops; code quality metrics; funding; and following the findable, accessible, interoperable, and reusable (FAIR) standards.
Chris Smith, Donald P. Cummins, Hege-Beate Fredriksen, Zebedee Nicholls, Malte Meinshausen, Myles Allen, Stuart Jenkins, Nicholas Leach, Camilla Mathison, and Antti-Ilari Partanen
Geosci. Model Dev., 17, 8569–8592, https://doi.org/10.5194/gmd-17-8569-2024, https://doi.org/10.5194/gmd-17-8569-2024, 2024
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Climate projections are only useful if the underlying models that produce them are well calibrated and can reproduce observed climate change. We formalise a software package that calibrates the open-source FaIR simple climate model to full-complexity Earth system models. Observations, including historical warming, and assessments of key climate variables such as that of climate sensitivity are used to constrain the model output.
Jingwei Xie, Xi Wang, Hailong Liu, Pengfei Lin, Jiangfeng Yu, Zipeng Yu, Junlin Wei, and Xiang Han
Geosci. Model Dev., 17, 8469–8493, https://doi.org/10.5194/gmd-17-8469-2024, https://doi.org/10.5194/gmd-17-8469-2024, 2024
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We propose the concept of mesoscale ocean direct numerical simulation (MODNS), which should resolve the first baroclinic deformation radius and ensure the numerical dissipative effects do not directly contaminate the mesoscale motions. It can be a benchmark for testing mesoscale ocean large eddy simulation (MOLES) methods in ocean models. We build an idealized Southern Ocean model using MITgcm to generate a type of MODNS. We also illustrate the diversity of multiscale eddy interactions.
Emily Black, John Ellis, and Ross I. Maidment
Geosci. Model Dev., 17, 8353–8372, https://doi.org/10.5194/gmd-17-8353-2024, https://doi.org/10.5194/gmd-17-8353-2024, 2024
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We present General TAMSAT-ALERT, a computationally lightweight and versatile tool for generating ensemble forecasts from time series data. General TAMSAT-ALERT is capable of combining multiple streams of monitoring and meteorological forecasting data into probabilistic hazard assessments. In this way, it complements existing systems and enhances their utility for actionable hazard assessment.
Sarah Schöngart, Lukas Gudmundsson, Mathias Hauser, Peter Pfleiderer, Quentin Lejeune, Shruti Nath, Sonia Isabelle Seneviratne, and Carl-Friedrich Schleussner
Geosci. Model Dev., 17, 8283–8320, https://doi.org/10.5194/gmd-17-8283-2024, https://doi.org/10.5194/gmd-17-8283-2024, 2024
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Precipitation and temperature are two of the most impact-relevant climatic variables. Yet, projecting future precipitation and temperature data under different emission scenarios relies on complex models that are computationally expensive. In this study, we propose a method that allows us to generate monthly means of local precipitation and temperature at low computational costs. Our modelling framework is particularly useful for all downstream applications of climate model data.
Benjamin M. Sanderson, Ben B. B. Booth, John Dunne, Veronika Eyring, Rosie A. Fisher, Pierre Friedlingstein, Matthew J. Gidden, Tomohiro Hajima, Chris D. Jones, Colin G. Jones, Andrew King, Charles D. Koven, David M. Lawrence, Jason Lowe, Nadine Mengis, Glen P. Peters, Joeri Rogelj, Chris Smith, Abigail C. Snyder, Isla R. Simpson, Abigail L. S. Swann, Claudia Tebaldi, Tatiana Ilyina, Carl-Friedrich Schleussner, Roland Séférian, Bjørn H. Samset, Detlef van Vuuren, and Sönke Zaehle
Geosci. Model Dev., 17, 8141–8172, https://doi.org/10.5194/gmd-17-8141-2024, https://doi.org/10.5194/gmd-17-8141-2024, 2024
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We discuss how, in order to provide more relevant guidance for climate policy, coordinated climate experiments should adopt a greater focus on simulations where Earth system models are provided with carbon emissions from fossil fuels together with land use change instructions, rather than past approaches that have largely focused on experiments with prescribed atmospheric carbon dioxide concentrations. We discuss how these goals might be achieved in coordinated climate modeling experiments.
Peter Berg, Thomas Bosshard, Denica Bozhinova, Lars Bärring, Joakim Löw, Carolina Nilsson, Gustav Strandberg, Johan Södling, Johan Thuresson, Renate Wilcke, and Wei Yang
Geosci. Model Dev., 17, 8173–8179, https://doi.org/10.5194/gmd-17-8173-2024, https://doi.org/10.5194/gmd-17-8173-2024, 2024
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When bias adjusting climate model data using quantile mapping, one needs to prescribe what to do at the tails of the distribution, where a larger data range is likely encountered outside of the calibration period. The end result is highly dependent on the method used. We show that, to avoid discontinuities in the time series, one needs to exclude data in the calibration range to also activate the extrapolation functionality in that time period.
Philip J. Rasch, Haruki Hirasawa, Mingxuan Wu, Sarah J. Doherty, Robert Wood, Hailong Wang, Andy Jones, James Haywood, and Hansi Singh
Geosci. Model Dev., 17, 7963–7994, https://doi.org/10.5194/gmd-17-7963-2024, https://doi.org/10.5194/gmd-17-7963-2024, 2024
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We introduce a protocol to compare computer climate simulations to better understand a proposed strategy intended to counter warming and climate impacts from greenhouse gas increases. This slightly changes clouds in six ocean regions to reflect more sunlight and cool the Earth. Example changes in clouds and climate are shown for three climate models. Cloud changes differ between the models, but precipitation and surface temperature changes are similar when their cooling effects are made similar.
Trude Eidhammer, Andrew Gettelman, Katherine Thayer-Calder, Duncan Watson-Parris, Gregory Elsaesser, Hugh Morrison, Marcus van Lier-Walqui, Ci Song, and Daniel McCoy
Geosci. Model Dev., 17, 7835–7853, https://doi.org/10.5194/gmd-17-7835-2024, https://doi.org/10.5194/gmd-17-7835-2024, 2024
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We describe a dataset where 45 parameters related to cloud processes in the Community Earth System Model version 2 (CESM2) Community Atmosphere Model version 6 (CAM6) are perturbed. Three sets of perturbed parameter ensembles (263 members) were created: current climate, preindustrial aerosol loading and future climate with sea surface temperature increased by 4 K.
Ha Thi Minh Ho-Hagemann, Vera Maurer, Stefan Poll, and Irina Fast
Geosci. Model Dev., 17, 7815–7834, https://doi.org/10.5194/gmd-17-7815-2024, https://doi.org/10.5194/gmd-17-7815-2024, 2024
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The regional Earth system model GCOAST-AHOI v2.0 that includes the regional climate model ICON-CLM coupled to the ocean model NEMO and the hydrological discharge model HD via the OASIS3-MCT coupler can be a useful tool for conducting long-term regional climate simulations over the EURO-CORDEX domain. The new OASIS3-MCT coupling interface implemented in ICON-CLM makes it more flexible for coupling to an external ocean model and an external hydrological discharge model.
Sandro Vattioni, Rahel Weber, Aryeh Feinberg, Andrea Stenke, John A. Dykema, Beiping Luo, Georgios A. Kelesidis, Christian A. Bruun, Timofei Sukhodolov, Frank N. Keutsch, Thomas Peter, and Gabriel Chiodo
Geosci. Model Dev., 17, 7767–7793, https://doi.org/10.5194/gmd-17-7767-2024, https://doi.org/10.5194/gmd-17-7767-2024, 2024
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We quantified impacts and efficiency of stratospheric solar climate intervention via solid particle injection. Microphysical interactions of solid particles with the sulfur cycle were interactively coupled to the heterogeneous chemistry scheme and the radiative transfer code of an aerosol–chemistry–climate model. Compared to injection of SO2 we only find a stronger cooling efficiency for solid particles when normalizing to the aerosol load but not when normalizing to the injection rate.
Samuel Rémy, Swen Metzger, Vincent Huijnen, Jason E. Williams, and Johannes Flemming
Geosci. Model Dev., 17, 7539–7567, https://doi.org/10.5194/gmd-17-7539-2024, https://doi.org/10.5194/gmd-17-7539-2024, 2024
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In this paper we describe the development of the future operational cycle 49R1 of the IFS-COMPO system, used for operational forecasts of atmospheric composition in the CAMS project, and focus on the implementation of the thermodynamical model EQSAM4Clim version 12. The implementation of EQSAM4Clim significantly improves the simulated secondary inorganic aerosol surface concentration. The new aerosol and precipitation acidity diagnostics showed good agreement against observational datasets.
Maximillian Van Wyk de Vries, Tom Matthews, L. Baker Perry, Nirakar Thapa, and Rob Wilby
Geosci. Model Dev., 17, 7629–7643, https://doi.org/10.5194/gmd-17-7629-2024, https://doi.org/10.5194/gmd-17-7629-2024, 2024
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This paper introduces the AtsMOS workflow, a new tool for improving weather forecasts in mountainous areas. By combining advanced statistical techniques with local weather data, AtsMOS can provide more accurate predictions of weather conditions. Using data from Mount Everest as an example, AtsMOS has shown promise in better forecasting hazardous weather conditions, making it a valuable tool for communities in mountainous regions and beyond.
Sofia Allende, Anne Marie Treguier, Camille Lique, Clément de Boyer Montégut, François Massonnet, Thierry Fichefet, and Antoine Barthélemy
Geosci. Model Dev., 17, 7445–7466, https://doi.org/10.5194/gmd-17-7445-2024, https://doi.org/10.5194/gmd-17-7445-2024, 2024
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We study the parameters of the turbulent-kinetic-energy mixed-layer-penetration scheme in the NEMO model with regard to sea-ice-covered regions of the Arctic Ocean. This evaluation reveals the impact of these parameters on mixed-layer depth, sea surface temperature and salinity, and ocean stratification. Our findings demonstrate significant impacts on sea ice thickness and sea ice concentration, emphasizing the need for accurately representing ocean mixing to understand Arctic climate dynamics.
Sabin I. Taranu, David M. Lawrence, Yoshihide Wada, Ting Tang, Erik Kluzek, Sam Rabin, Yi Yao, Steven J. De Hertog, Inne Vanderkelen, and Wim Thiery
Geosci. Model Dev., 17, 7365–7399, https://doi.org/10.5194/gmd-17-7365-2024, https://doi.org/10.5194/gmd-17-7365-2024, 2024
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In this study, we improved a climate model by adding the representation of water use sectors such as domestic, industry, and agriculture. This new feature helps us understand how water is used and supplied in various areas. We tested our model from 1971 to 2010 and found that it accurately identifies areas with water scarcity. By modelling the competition between sectors when water availability is limited, the model helps estimate the intensity and extent of individual sectors' water shortages.
Michael Nole, Jonah Bartrand, Fawz Naim, and Glenn Hammond
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-162, https://doi.org/10.5194/gmd-2024-162, 2024
Revised manuscript accepted for GMD
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Safe carbon dioxide (CO2) storage is likely to be critical for mitigating some of the most dangerous effects of climate change. We present a simulation framework for modeling CO2 storage beneath the seafloor where CO2 can form a solid. This can aid in permanent CO2 storage for long periods of time. Our models show what a commercial-scale CO2 injection would look like in a marine environment. We discuss what would need to be considered when designing a sub-sea CO2 injection.
Cynthia Whaley, Montana Etten-Bohm, Courtney Schumacher, Ayodeji Akingunola, Vivek Arora, Jason Cole, Michael Lazare, David Plummer, Knut von Salzen, and Barbara Winter
Geosci. Model Dev., 17, 7141–7155, https://doi.org/10.5194/gmd-17-7141-2024, https://doi.org/10.5194/gmd-17-7141-2024, 2024
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This paper describes how lightning was added as a process in the Canadian Earth System Model in order to interactively respond to climate changes. As lightning is an important cause of global wildfires, this new model development allows for more realistic projections of how wildfires may change in the future, responding to a changing climate.
Erik Gustafsson, Bo G. Gustafsson, Martijn Hermans, Christoph Humborg, and Christian Stranne
Geosci. Model Dev., 17, 7157–7179, https://doi.org/10.5194/gmd-17-7157-2024, https://doi.org/10.5194/gmd-17-7157-2024, 2024
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Methane (CH4) cycling in the Baltic Proper is studied through model simulations, enabling a first estimate of key CH4 fluxes. A preliminary budget identifies benthic CH4 release as the dominant source and two main sinks: CH4 oxidation in the water (92 % of sinks) and outgassing to the atmosphere (8 % of sinks). This study addresses CH4 emissions from coastal seas and is a first step toward understanding the relative importance of open-water outgassing compared with local coastal hotspots.
Daniel Ries, Katherine Goode, Kellie McClernon, and Benjamin Hillman
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-133, https://doi.org/10.5194/gmd-2024-133, 2024
Revised manuscript accepted for GMD
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Machine learning has advanced research in the climate science domain, but its models are difficult to understand. In order to understand the impacts and consequences of climate interventions such as stratospheric aerosol injection, complex models are often necessary. We use a case study to illustrate how we can understand the inner workings of a complex model. We present this technique as an exploratory tool that can be used to quickly discover and assess relationships in complex climate data.
Florian Zabel, Matthias Knüttel, and Benjamin Poschlod
EGUsphere, https://doi.org/10.5194/egusphere-2024-2526, https://doi.org/10.5194/egusphere-2024-2526, 2024
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CropSuite is a fuzzy-logic based high resolution open-source crop suitability model considering the impact of climate variability. We apply CropSuite for 48 important staple and cash crops at 1 km spatial resolution for Africa. We find that climate variability significantly impacts on suitable areas, but also affects optimal sowing dates, and multiple cropping potentials. The results provide information that can be used for climate impact assessments, adaptation and land-use planning.
Kerstin Hartung, Bastian Kern, Nils-Arne Dreier, Jörn Geisbüsch, Mahnoosh Haghighatnasab, Patrick Jöckel, Astrid Kerkweg, Wilton Jaciel Loch, Florian Prill, and Daniel Rieger
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-135, https://doi.org/10.5194/gmd-2024-135, 2024
Revised manuscript accepted for GMD
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The Icosahedral Nonhydrostatic (ICON) Model Community Interface (ComIn) library supports connecting third-party modules to the ICON model. Third-party modules can range from simple diagnostic Python scripts to full chemistry models. ComIn offers a low barrier for code extensions to ICON, provides multi-language support (Fortran, C/C++ and Python) and reduces the migration effort in response to new ICON releases. This paper presents the ComIn design principles and a range of use cases.
Tridib Banerjee, Patrick Scholz, Sergey Danilov, Knut Klingbeil, and Dmitry Sidorenko
Geosci. Model Dev., 17, 7051–7065, https://doi.org/10.5194/gmd-17-7051-2024, https://doi.org/10.5194/gmd-17-7051-2024, 2024
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In this paper we propose a new alternative to one of the functionalities of the sea ice model FESOM2. The alternative we propose allows the model to capture and simulate fast changes in quantities like sea surface elevation more accurately. We also demonstrate that the new alternative is faster and more adept at taking advantages of highly parallelized computing infrastructure. We therefore show that this new alternative is a great addition to the sea ice model FESOM2.
Yuwen Fan, Zhao Yang, Min-Hui Lo, Jina Hur, and Eun-Soon Im
Geosci. Model Dev., 17, 6929–6947, https://doi.org/10.5194/gmd-17-6929-2024, https://doi.org/10.5194/gmd-17-6929-2024, 2024
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Irrigated agriculture in the North China Plain (NCP) has a significant impact on the local climate. To better understand this impact, we developed a specialized model specifically for the NCP region. This model allows us to simulate the double-cropping vegetation and the dynamic irrigation practices that are commonly employed in the NCP. This model shows improved performance in capturing the general crop growth, such as crop stages, biomass, crop yield, and vegetation greenness.
Ed Blockley, Emma Fiedler, Jeff Ridley, Luke Roberts, Alex West, Dan Copsey, Daniel Feltham, Tim Graham, David Livings, Clement Rousset, David Schroeder, and Martin Vancoppenolle
Geosci. Model Dev., 17, 6799–6817, https://doi.org/10.5194/gmd-17-6799-2024, https://doi.org/10.5194/gmd-17-6799-2024, 2024
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This paper documents the sea ice model component of the latest Met Office coupled model configuration, which will be used as the physical basis for UK contributions to CMIP7. Documentation of science options used in the configuration are given along with a brief model evaluation. This is the first UK configuration to use NEMO’s new SI3 sea ice model. We provide details on how SI3 was adapted to work with Met Office coupling methodology and documentation of coupling processes in the model.
Jean-François Lemieux, William H. Lipscomb, Anthony Craig, David A. Bailey, Elizabeth C. Hunke, Philippe Blain, Till A. S. Rasmussen, Mats Bentsen, Frédéric Dupont, David Hebert, and Richard Allard
Geosci. Model Dev., 17, 6703–6724, https://doi.org/10.5194/gmd-17-6703-2024, https://doi.org/10.5194/gmd-17-6703-2024, 2024
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We present the latest version of the CICE model. It solves equations that describe the dynamics and the growth and melt of sea ice. To do so, the domain is divided into grid cells and variables are positioned at specific locations in the cells. A new implementation (C-grid) is presented, with the velocity located on cell edges. Compared to the previous B-grid, the C-grid allows for a natural coupling with some oceanic and atmospheric models. It also allows for ice transport in narrow channels.
Rachid El Montassir, Olivier Pannekoucke, and Corentin Lapeyre
Geosci. Model Dev., 17, 6657–6681, https://doi.org/10.5194/gmd-17-6657-2024, https://doi.org/10.5194/gmd-17-6657-2024, 2024
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This study introduces a novel approach that combines physics and artificial intelligence (AI) for improved cloud cover forecasting. This approach outperforms traditional deep learning (DL) methods in producing realistic and physically consistent results while requiring less training data. This architecture provides a promising solution to overcome the limitations of classical AI methods and contributes to open up new possibilities for combining physical knowledge with deep learning models.
Marit Sandstad, Borgar Aamaas, Ane Nordlie Johansen, Marianne Tronstad Lund, Glen Philip Peters, Bjørn Hallvard Samset, Benjamin Mark Sanderson, and Ragnhild Bieltvedt Skeie
Geosci. Model Dev., 17, 6589–6625, https://doi.org/10.5194/gmd-17-6589-2024, https://doi.org/10.5194/gmd-17-6589-2024, 2024
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The CICERO-SCM has existed as a Fortran model since 1999 that calculates the radiative forcing and concentrations from emissions and is an upwelling diffusion energy balance model of the ocean that calculates temperature change. In this paper, we describe an updated version ported to Python and publicly available at https://github.com/ciceroOslo/ciceroscm (https://doi.org/10.5281/zenodo.10548720). This version contains functionality for parallel runs and automatic calibration.
Sébastien Masson, Swen Jullien, Eric Maisonnave, David Gill, Guillaume Samson, Mathieu Le Corre, and Lionel Renault
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-140, https://doi.org/10.5194/gmd-2024-140, 2024
Revised manuscript accepted for GMD
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This article details a new feature we implemented in the most popular regional atmospheric model (WRF). This feature allows data to be exchanged between WRF and any other model (e.g. an ocean model) using the coupling library Ocean-Atmosphere-Sea-Ice-Soil – Model Coupling Toolkit (OASIS3-MCT). This coupling interface is designed to be non-intrusive, flexible and modular. It also offers the possibility of taking into account the nested zooms used in WRF or in the models with which it is coupled.
Jordi Buckley Paules, Simone Fatichi, Bonnie Warring, and Athanasios Paschalis
EGUsphere, https://doi.org/10.5194/egusphere-2024-2072, https://doi.org/10.5194/egusphere-2024-2072, 2024
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We outline and validate developments to the pre-existing process-based model T&C to better represent cropland processes. Foreseen applications of T&C-CROP include hydrological and carbon storage implications of land-use transitions involving crop, forest, and pasture conversion, as well as studies on optimal irrigation and fertilization under a changing climate.
Zheng Xiang, Yongkang Xue, Weidong Guo, Melannie D. Hartman, Ye Liu, and William J. Parton
Geosci. Model Dev., 17, 6437–6464, https://doi.org/10.5194/gmd-17-6437-2024, https://doi.org/10.5194/gmd-17-6437-2024, 2024
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A process-based plant carbon (C)–nitrogen (N) interface coupling framework has been developed which mainly focuses on plant resistance and N-limitation effects on photosynthesis, plant respiration, and plant phenology. A dynamic C / N ratio is introduced to represent plant resistance and self-adjustment. The framework has been implemented in a coupled biophysical-ecosystem–biogeochemical model, and testing results show a general improvement in simulating plant properties with this framework.
Ulrich Georg Wortmann, Tina Tsan, Mahrukh Niazi, Ruben Navasardyan, Magnus-Roland Marun, Bernardo S. Chede, Jingwen Zhong, and Morgan Wolfe
EGUsphere, https://doi.org/10.5194/egusphere-2024-1864, https://doi.org/10.5194/egusphere-2024-1864, 2024
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The Earth Science Box Modeling Toolkit (ESBMTK) is a Python library designed to separate model description from numerical implementation. This approach results in well-documented, easily readable, and maintainable model code, allowing students and researchers to concentrate on conceptual challenges rather than mathematical intricacies.
Malcolm John Roberts, Kevin A. Reed, Qing Bao, Joseph J. Barsugli, Suzana J. Camargo, Louis-Philippe Caron, Ping Chang, Cheng-Ta Chen, Hannah M. Christensen, Gokhan Danabasoglu, Ivy Frenger, Neven S. Fučkar, Shabeh ul Hasson, Helene T. Hewitt, Huanping Huang, Daehyun Kim, Chihiro Kodama, Michael Lai, Lai-Yung Ruby Leung, Ryo Mizuta, Paulo Nobre, Pablo Ortega, Dominique Paquin, Christopher D. Roberts, Enrico Scoccimarro, Jon Seddon, Anne Marie Treguier, Chia-Ying Tu, Paul A. Ullrich, Pier Luigi Vidale, Michael F. Wehner, Colin M. Zarzycki, Bosong Zhang, Wei Zhang, and Ming Zhao
EGUsphere, https://doi.org/10.5194/egusphere-2024-2582, https://doi.org/10.5194/egusphere-2024-2582, 2024
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HighResMIP2 is a model intercomparison project focussing on high resolution global climate models, that is those with grid spacings of 25 km or less in atmosphere and ocean, using simulations of decades to a century or so in length. We are proposing an update of our simulation protocol to make the models more applicable to key questions for climate variability and hazard in present day and future projections, and to build links with other communities to provide more robust climate information.
Yangke Liu, Qing Bao, Bian He, Xiaofei Wu, Jing Yang, Yimin Liu, Guoxiong Wu, Tao Zhu, Siyuan Zhou, Yao Tang, Ankang Qu, Yalan Fan, Anling Liu, Dandan Chen, Zhaoming Luo, Xing Hu, and Tongwen Wu
Geosci. Model Dev., 17, 6249–6275, https://doi.org/10.5194/gmd-17-6249-2024, https://doi.org/10.5194/gmd-17-6249-2024, 2024
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We give an overview of the Institute of Atmospheric Physics–Chinese Academy of Sciences subseasonal-to-seasonal ensemble forecasting system and Madden–Julian Oscillation forecast evaluation of the system. Compared to other S2S models, the IAP-CAS model has its benefits but also biases, i.e., underdispersive ensemble, overestimated amplitude, and faster propagation speed when forecasting MJO. We provide a reason for these biases and prospects for further improvement of this system in the future.
Martin Juckes, Karl E. Taylor, Fabrizio Antonio, David Brayshaw, Carlo Buontempo, Jian Cao, Paul J. Durack, Michio Kawamiya, Hyungjun Kim, Tomas Lovato, Chloe Mackallah, Matthew Mizielinski, Alessandra Nuzzo, Martina Stockhause, Daniele Visioni, Jeremy Walton, Briony Turner, Eleanor O’Rourke, and Beth Dingley
EGUsphere, https://doi.org/10.5194/egusphere-2024-2363, https://doi.org/10.5194/egusphere-2024-2363, 2024
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The Baseline Climate Variables for Earth System Modelling (ESM-BCVs) are defined as a list of 132 variables which have high utility for the evaluation and exploitation of climate simulations. The list reflects the most heavily used variables from Earth System Models, based on an assessment of data publication and download records from the largest archive of global climate projects.
Katherine Smith, Alice M. Barthel, LeAnn M. Conlon, Luke P. Van Roekel, Anthony Bartoletti, Jean-Christophe Golez, Chengzhu Zhang, Carolyn Branecky Begeman, James J. Benedict, Gautum Bisht, Yan Feng, Walter Hannah, Bryce E. Harrop, Nicole Jeffery, Wuyin Lin, Po-Lun Ma, Mathew E. Maltrud, Mark R. Petersen, Balwinder Singh, Qi Tang, Teklu Tesfa, Jonathan D. Wolfe, Shaocheng Xie, Xue Zheng, Karthik Balaguru, Oluwayemi Garuba, Peter Gleckler, Aixue Hu, Jiwoo Lee, Ben Moore-Maley, and Ana C. Ordonez
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-149, https://doi.org/10.5194/gmd-2024-149, 2024
Revised manuscript accepted for GMD
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Version 2.1 of the U.S. Department of Energy's Energy Exascale Earth System Model (E3SM) adds the Fox-Kemper et al. (2011) mixed layer eddy parameterization, which restratifies the ocean surface layer through an overturning streamfunction. Results include surface layer biases reduction in temperature, salinity, and sea-ice extent in the North Atlantic, a small strengthening of the Atlantic Meridional Overturning Circulation, and improvements in many atmospheric climatological variables.
Bo Dong, Paul Ullrich, Jiwoo Lee, Peter Gleckler, Kristin Chang, and Travis O'Brien
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-142, https://doi.org/10.5194/gmd-2024-142, 2024
Revised manuscript accepted for GMD
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1. A metrics package designed for easy analysis of AR characteristics and statistics is presented. 2. The tool is efficient for diagnosing systematic AR bias in climate models, and useful for evaluating new AR characteristics in model simulations. 3. In climate models, landfalling AR precipitation shows dry biases globally, and AR tracks are farther poleward (equatorward) in the north and south Atlantic (south Pacific and Indian Ocean).
Laurent Brodeau, Pierre Rampal, Einar Ólason, and Véronique Dansereau
Geosci. Model Dev., 17, 6051–6082, https://doi.org/10.5194/gmd-17-6051-2024, https://doi.org/10.5194/gmd-17-6051-2024, 2024
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A new brittle sea ice rheology, BBM, has been implemented into the sea ice component of NEMO. We describe how a new spatial discretization framework was introduced to achieve this. A set of idealized and realistic ocean and sea ice simulations of the Arctic have been performed using BBM and the standard viscous–plastic rheology of NEMO. When compared to satellite data, our simulations show that our implementation of BBM leads to a fairly good representation of sea ice deformations.
Joseph P. Hollowed, Christiane Jablonowski, Hunter Y. Brown, Benjamin R. Hillman, Diana L. Bull, and Joseph L. Hart
Geosci. Model Dev., 17, 5913–5938, https://doi.org/10.5194/gmd-17-5913-2024, https://doi.org/10.5194/gmd-17-5913-2024, 2024
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Large volcanic eruptions deposit material in the upper atmosphere, which is capable of altering temperature and wind patterns of Earth's atmosphere for subsequent years. This research describes a new method of simulating these effects in an idealized, efficient atmospheric model. A volcanic eruption of sulfur dioxide is described with a simplified set of physical rules, which eventually cools the planetary surface. This model has been designed as a test bed for climate attribution studies.
Hong Li, Yi Yang, Jian Sun, Yuan Jiang, Ruhui Gan, and Qian Xie
Geosci. Model Dev., 17, 5883–5896, https://doi.org/10.5194/gmd-17-5883-2024, https://doi.org/10.5194/gmd-17-5883-2024, 2024
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Vertical atmospheric motions play a vital role in convective-scale precipitation forecasts by connecting atmospheric dynamics with cloud development. A three-dimensional variational vertical velocity assimilation scheme is developed within the high-resolution CMA-MESO model, utilizing the adiabatic Richardson equation as the observation operator. A 10 d continuous run and an individual case study demonstrate improved forecasts, confirming the scheme's effectiveness.
Matthias Nützel, Laura Stecher, Patrick Jöckel, Franziska Winterstein, Martin Dameris, Michael Ponater, Phoebe Graf, and Markus Kunze
Geosci. Model Dev., 17, 5821–5849, https://doi.org/10.5194/gmd-17-5821-2024, https://doi.org/10.5194/gmd-17-5821-2024, 2024
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We extended the infrastructure of our modelling system to enable the use of an additional radiation scheme. After calibrating the model setups to the old and the new radiation scheme, we find that the simulation with the new scheme shows considerable improvements, e.g. concerning the cold-point temperature and stratospheric water vapour. Furthermore, perturbations of radiative fluxes associated with greenhouse gas changes, e.g. of methane, tend to be improved when the new scheme is employed.
Yibing Wang, Xianhong Xie, Bowen Zhu, Arken Tursun, Fuxiao Jiang, Yao Liu, Dawei Peng, and Buyun Zheng
Geosci. Model Dev., 17, 5803–5819, https://doi.org/10.5194/gmd-17-5803-2024, https://doi.org/10.5194/gmd-17-5803-2024, 2024
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Urban expansion intensifies challenges like urban heat and urban dry islands. To address this, we developed an urban module, VIC-urban, in the Variable Infiltration Capacity (VIC) model. Tested in Beijing, VIC-urban accurately simulated turbulent heat fluxes, runoff, and land surface temperature. We provide a reliable tool for large-scale simulations considering urban environment and a systematic urban modelling framework within VIC, offering crucial insights for urban planners and designers.
Jeremy Carter, Erick A. Chacón-Montalván, and Amber Leeson
Geosci. Model Dev., 17, 5733–5757, https://doi.org/10.5194/gmd-17-5733-2024, https://doi.org/10.5194/gmd-17-5733-2024, 2024
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Climate models are essential tools in the study of climate change and its wide-ranging impacts on life on Earth. However, the output is often afflicted with some bias. In this paper, a novel model is developed to predict and correct bias in the output of climate models. The model captures uncertainty in the correction and explicitly models underlying spatial correlation between points. These features are of key importance for climate change impact assessments and resulting decision-making.
Anna Martin, Veronika Gayler, Benedikt Steil, Klaus Klingmüller, Patrick Jöckel, Holger Tost, Jos Lelieveld, and Andrea Pozzer
Geosci. Model Dev., 17, 5705–5732, https://doi.org/10.5194/gmd-17-5705-2024, https://doi.org/10.5194/gmd-17-5705-2024, 2024
Short summary
Short summary
The study evaluates the land surface and vegetation model JSBACHv4 as a replacement for the simplified submodel SURFACE in EMAC. JSBACH mitigates earlier problems of soil dryness, which are critical for vegetation modelling. When analysed using different datasets, the coupled model shows strong correlations of key variables, such as land surface temperature, surface albedo and radiation flux. The versatility of the model increases significantly, while the overall performance does not degrade.
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Short summary
Kernel density estimators (KDE) approximate the probability density of a data set without the assumption of an underlying distribution. We used the solution of the diffusion equation, and a new approximation of the optimal smoothing parameter build on two pilot estimation steps, to construct such a KDE best suited for typical characteristics of geoscientific data. The resulting KDE is insensitive to noise and well resolves multimodal data structures as well as boundary-close data.
Kernel density estimators (KDE) approximate the probability density of a data set without the...