Articles | Volume 14, issue 1
https://doi.org/10.5194/gmd-14-495-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-14-495-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
26 Jan 2021
Model description paper |
| 26 Jan 2021
| 26 Jan 2021
A revised dry deposition scheme for land–atmosphere exchange of trace gases in ECHAM/MESSy v2.54
Tamara Emmerichs
Institute of Energy and Climate Research 8, Troposphere, Forschungszentrum Jülich, Jülich, Germany
Astrid Kerkweg
Institute of Energy and Climate Research 8, Troposphere, Forschungszentrum Jülich, Jülich, Germany
Huug Ouwersloot
Max Planck Institute for Chemistry, Mainz, Germany
Silvano Fares
National Research Council, Institute of Bioeconomy, Rome, Italy
Ivan Mammarella
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Domenico Taraborrelli
CORRESPONDING AUTHOR
Institute of Energy and Climate Research 8, Troposphere, Forschungszentrum Jülich, Jülich, Germany
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Alessandro Zanchetta, Linda M. J. Kooijmans, Steven van Heuven, Andrea Scifo, Hubertus A. Scheeren, Ivan Mammarella, Ute Karstens, Jin Ma, Maarten Krol, and Huilin Chen
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Matti Kämäräinen, Juha-Pekka Tuovinen, Markku Kulmala, Ivan Mammarella, Juha Aalto, Henriikka Vekuri, Annalea Lohila, and Anna Lintunen
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Flora Kluge, Tilman Hüneke, Christophe Lerot, Simon Rosanka, Meike K. Rotermund, Domenico Taraborrelli, Benjamin Weyland, and Klaus Pfeilsticker
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Kim A. P. Faassen, Linh N. T. Nguyen, Eadin R. Broekema, Bert A. M. Kers, Ivan Mammarella, Timo Vesala, Penelope A. Pickers, Andrew C. Manning, Jordi Vilà-Guerau de Arellano, Harro A. J. Meijer, Wouter Peters, and Ingrid T. Luijkx
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Kukka-Maaria Kohonen, Roderick Dewar, Gianluca Tramontana, Aleksanteri Mauranen, Pasi Kolari, Linda M. J. Kooijmans, Dario Papale, Timo Vesala, and Ivan Mammarella
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Joonatan Ala-Könni, Kukka-Maaria Kohonen, Matti Leppäranta, and Ivan Mammarella
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Geosci. Model Dev., 15, 4597–4623, https://doi.org/10.5194/gmd-15-4597-2022, https://doi.org/10.5194/gmd-15-4597-2022, 2022
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Lakes and reservoirs are warming across the globe. To better understand how lakes are changing and to project their future behavior amidst various sources of uncertainty, simulations with a range of lake models are required. This in turn requires international coordination across different lake modelling teams worldwide. Here we present a protocol for and results from coordinated simulations of climate change impacts on lakes worldwide.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
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Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Hanna K. Lappalainen, Tuukka Petäjä, Timo Vihma, Jouni Räisänen, Alexander Baklanov, Sergey Chalov, Igor Esau, Ekaterina Ezhova, Matti Leppäranta, Dmitry Pozdnyakov, Jukka Pumpanen, Meinrat O. Andreae, Mikhail Arshinov, Eija Asmi, Jianhui Bai, Igor Bashmachnikov, Boris Belan, Federico Bianchi, Boris Biskaborn, Michael Boy, Jaana Bäck, Bin Cheng, Natalia Chubarova, Jonathan Duplissy, Egor Dyukarev, Konstantinos Eleftheriadis, Martin Forsius, Martin Heimann, Sirkku Juhola, Vladimir Konovalov, Igor Konovalov, Pavel Konstantinov, Kajar Köster, Elena Lapshina, Anna Lintunen, Alexander Mahura, Risto Makkonen, Svetlana Malkhazova, Ivan Mammarella, Stefano Mammola, Stephany Buenrostro Mazon, Outi Meinander, Eugene Mikhailov, Victoria Miles, Stanislav Myslenkov, Dmitry Orlov, Jean-Daniel Paris, Roberta Pirazzini, Olga Popovicheva, Jouni Pulliainen, Kimmo Rautiainen, Torsten Sachs, Vladimir Shevchenko, Andrey Skorokhod, Andreas Stohl, Elli Suhonen, Erik S. Thomson, Marina Tsidilina, Veli-Pekka Tynkkynen, Petteri Uotila, Aki Virkkula, Nadezhda Voropay, Tobias Wolf, Sayaka Yasunaka, Jiahua Zhang, Yubao Qiu, Aijun Ding, Huadong Guo, Valery Bondur, Nikolay Kasimov, Sergej Zilitinkevich, Veli-Matti Kerminen, and Markku Kulmala
Atmos. Chem. Phys., 22, 4413–4469, https://doi.org/10.5194/acp-22-4413-2022, https://doi.org/10.5194/acp-22-4413-2022, 2022
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We summarize results during the last 5 years in the northern Eurasian region, especially from Russia, and introduce recent observations of the air quality in the urban environments in China. Although the scientific knowledge in these regions has increased, there are still gaps in our understanding of large-scale climate–Earth surface interactions and feedbacks. This arises from limitations in research infrastructures and integrative data analyses, hindering a comprehensive system analysis.
Andrea Pozzer, Simon F. Reifenberg, Vinod Kumar, Bruno Franco, Matthias Kohl, Domenico Taraborrelli, Sergey Gromov, Sebastian Ehrhart, Patrick Jöckel, Rolf Sander, Veronica Fall, Simon Rosanka, Vlassis Karydis, Dimitris Akritidis, Tamara Emmerichs, Monica Crippa, Diego Guizzardi, Johannes W. Kaiser, Lieven Clarisse, Astrid Kiendler-Scharr, Holger Tost, and Alexandra Tsimpidi
Geosci. Model Dev., 15, 2673–2710, https://doi.org/10.5194/gmd-15-2673-2022, https://doi.org/10.5194/gmd-15-2673-2022, 2022
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A newly developed setup of the chemistry general circulation model EMAC (ECHAM5/MESSy for Atmospheric Chemistry) is evaluated here. A comprehensive organic degradation mechanism is used and coupled with a volatility base model.
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Timo Vesala, Kukka-Maaria Kohonen, Linda M. J. Kooijmans, Arnaud P. Praplan, Lenka Foltýnová, Pasi Kolari, Markku Kulmala, Jaana Bäck, David Nelson, Dan Yakir, Mark Zahniser, and Ivan Mammarella
Atmos. Chem. Phys., 22, 2569–2584, https://doi.org/10.5194/acp-22-2569-2022, https://doi.org/10.5194/acp-22-2569-2022, 2022
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Carbonyl sulfide (COS) provides new insights into carbon cycle research. We present an easy-to-use flux parameterization and the longest existing time series of forest–atmosphere COS exchange measurements, which allow us to study both seasonal and interannual variability. We observed only uptake of COS by the forest on an annual basis, with 37 % variability between years. Upscaling the boreal COS uptake using a biosphere model indicates a significant missing COS sink at high latitudes.
Anna-Maria Virkkala, Susan M. Natali, Brendan M. Rogers, Jennifer D. Watts, Kathleen Savage, Sara June Connon, Marguerite Mauritz, Edward A. G. Schuur, Darcy Peter, Christina Minions, Julia Nojeim, Roisin Commane, Craig A. Emmerton, Mathias Goeckede, Manuel Helbig, David Holl, Hiroki Iwata, Hideki Kobayashi, Pasi Kolari, Efrén López-Blanco, Maija E. Marushchak, Mikhail Mastepanov, Lutz Merbold, Frans-Jan W. Parmentier, Matthias Peichl, Torsten Sachs, Oliver Sonnentag, Masahito Ueyama, Carolina Voigt, Mika Aurela, Julia Boike, Gerardo Celis, Namyi Chae, Torben R. Christensen, M. Syndonia Bret-Harte, Sigrid Dengel, Han Dolman, Colin W. Edgar, Bo Elberling, Eugenie Euskirchen, Achim Grelle, Juha Hatakka, Elyn Humphreys, Järvi Järveoja, Ayumi Kotani, Lars Kutzbach, Tuomas Laurila, Annalea Lohila, Ivan Mammarella, Yojiro Matsuura, Gesa Meyer, Mats B. Nilsson, Steven F. Oberbauer, Sang-Jong Park, Roman Petrov, Anatoly S. Prokushkin, Christopher Schulze, Vincent L. St. Louis, Eeva-Stiina Tuittila, Juha-Pekka Tuovinen, William Quinton, Andrej Varlagin, Donatella Zona, and Viacheslav I. Zyryanov
Earth Syst. Sci. Data, 14, 179–208, https://doi.org/10.5194/essd-14-179-2022, https://doi.org/10.5194/essd-14-179-2022, 2022
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The effects of climate warming on carbon cycling across the Arctic–boreal zone (ABZ) remain poorly understood due to the relatively limited distribution of ABZ flux sites. Fortunately, this flux network is constantly increasing, but new measurements are published in various platforms, making it challenging to understand the ABZ carbon cycle as a whole. Here, we compiled a new database of Arctic–boreal CO2 fluxes to help facilitate large-scale assessments of the ABZ carbon cycle.
Linda M. J. Kooijmans, Ara Cho, Jin Ma, Aleya Kaushik, Katherine D. Haynes, Ian Baker, Ingrid T. Luijkx, Mathijs Groenink, Wouter Peters, John B. Miller, Joseph A. Berry, Jerome Ogée, Laura K. Meredith, Wu Sun, Kukka-Maaria Kohonen, Timo Vesala, Ivan Mammarella, Huilin Chen, Felix M. Spielmann, Georg Wohlfahrt, Max Berkelhammer, Mary E. Whelan, Kadmiel Maseyk, Ulli Seibt, Roisin Commane, Richard Wehr, and Maarten Krol
Biogeosciences, 18, 6547–6565, https://doi.org/10.5194/bg-18-6547-2021, https://doi.org/10.5194/bg-18-6547-2021, 2021
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The gas carbonyl sulfide (COS) can be used to estimate photosynthesis. To adopt this approach on regional and global scales, we need biosphere models that can simulate COS exchange. So far, such models have not been evaluated against observations. We evaluate the COS biosphere exchange of the SiB4 model against COS flux observations. We find that the model is capable of simulating key processes in COS biosphere exchange. Still, we give recommendations for further improvement of the model.
Auke J. Visser, Laurens N. Ganzeveld, Ignacio Goded, Maarten C. Krol, Ivan Mammarella, Giovanni Manca, and K. Folkert Boersma
Atmos. Chem. Phys., 21, 18393–18411, https://doi.org/10.5194/acp-21-18393-2021, https://doi.org/10.5194/acp-21-18393-2021, 2021
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Dry deposition is an important sink for tropospheric ozone that affects ecosystem carbon uptake, but process understanding remains incomplete. We apply a common deposition representation in atmospheric chemistry models and a multi-layer canopy model to multi-year ozone deposition observations. The multi-layer canopy model performs better on diurnal timescales compared to the common approach, leading to a substantially improved simulation of ozone deposition and vegetation ozone impact metrics.
Alex Resovsky, Michel Ramonet, Leonard Rivier, Jerome Tarniewicz, Philippe Ciais, Martin Steinbacher, Ivan Mammarella, Meelis Mölder, Michal Heliasz, Dagmar Kubistin, Matthias Lindauer, Jennifer Müller-Williams, Sebastien Conil, and Richard Engelen
Atmos. Meas. Tech., 14, 6119–6135, https://doi.org/10.5194/amt-14-6119-2021, https://doi.org/10.5194/amt-14-6119-2021, 2021
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We present a technical description of a statistical methodology for extracting synoptic- and seasonal-length anomalies from greenhouse gas time series. The definition of what represents an anomalous signal is somewhat subjective, which we touch on throughout the paper. We show, however, that the method performs reasonably well in extracting portions of time series influenced by significant North Atlantic Oscillation weather episodes and continent-wide terrestrial biospheric aberrations.
Pavel Alekseychik, Aino Korrensalo, Ivan Mammarella, Samuli Launiainen, Eeva-Stiina Tuittila, Ilkka Korpela, and Timo Vesala
Biogeosciences, 18, 4681–4704, https://doi.org/10.5194/bg-18-4681-2021, https://doi.org/10.5194/bg-18-4681-2021, 2021
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Bogs of northern Eurasia represent a major type of peatland ecosystem and contain vast amounts of carbon, but carbon balance monitoring studies on bogs are scarce. The current project explores 6 years of carbon balance data obtained using the state-of-the-art eddy-covariance technique at a Finnish bog Siikaneva. The results reveal relatively low interannual variability indicative of ecosystem resilience to both cool and hot summers and provide new insights into the seasonal course of C fluxes.
Vinod Kumar, Julia Remmers, Steffen Beirle, Joachim Fallmann, Astrid Kerkweg, Jos Lelieveld, Mariano Mertens, Andrea Pozzer, Benedikt Steil, Marc Barra, Holger Tost, and Thomas Wagner
Atmos. Meas. Tech., 14, 5241–5269, https://doi.org/10.5194/amt-14-5241-2021, https://doi.org/10.5194/amt-14-5241-2021, 2021
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We present high-resolution regional atmospheric chemistry model simulations focused around Germany. We highlight the importance of spatial resolution of the model itself as well as the input emissions inventory and short-scale temporal variability of emissions for simulations. We propose a consistent approach for evaluating the simulated vertical distribution of NO2 using MAX-DOAS measurements while also considering its spatial sensitivity volume and change in sensitivity within this volume.
Kyle B. Delwiche, Sara Helen Knox, Avni Malhotra, Etienne Fluet-Chouinard, Gavin McNicol, Sarah Feron, Zutao Ouyang, Dario Papale, Carlo Trotta, Eleonora Canfora, You-Wei Cheah, Danielle Christianson, Ma. Carmelita R. Alberto, Pavel Alekseychik, Mika Aurela, Dennis Baldocchi, Sheel Bansal, David P. Billesbach, Gil Bohrer, Rosvel Bracho, Nina Buchmann, David I. Campbell, Gerardo Celis, Jiquan Chen, Weinan Chen, Housen Chu, Higo J. Dalmagro, Sigrid Dengel, Ankur R. Desai, Matteo Detto, Han Dolman, Elke Eichelmann, Eugenie Euskirchen, Daniela Famulari, Kathrin Fuchs, Mathias Goeckede, Sébastien Gogo, Mangaliso J. Gondwe, Jordan P. Goodrich, Pia Gottschalk, Scott L. Graham, Martin Heimann, Manuel Helbig, Carole Helfter, Kyle S. Hemes, Takashi Hirano, David Hollinger, Lukas Hörtnagl, Hiroki Iwata, Adrien Jacotot, Gerald Jurasinski, Minseok Kang, Kuno Kasak, John King, Janina Klatt, Franziska Koebsch, Ken W. Krauss, Derrick Y. F. Lai, Annalea Lohila, Ivan Mammarella, Luca Belelli Marchesini, Giovanni Manca, Jaclyn Hatala Matthes, Trofim Maximov, Lutz Merbold, Bhaskar Mitra, Timothy H. Morin, Eiko Nemitz, Mats B. Nilsson, Shuli Niu, Walter C. Oechel, Patricia Y. Oikawa, Keisuke Ono, Matthias Peichl, Olli Peltola, Michele L. Reba, Andrew D. Richardson, William Riley, Benjamin R. K. Runkle, Youngryel Ryu, Torsten Sachs, Ayaka Sakabe, Camilo Rey Sanchez, Edward A. Schuur, Karina V. R. Schäfer, Oliver Sonnentag, Jed P. Sparks, Ellen Stuart-Haëntjens, Cove Sturtevant, Ryan C. Sullivan, Daphne J. Szutu, Jonathan E. Thom, Margaret S. Torn, Eeva-Stiina Tuittila, Jessica Turner, Masahito Ueyama, Alex C. Valach, Rodrigo Vargas, Andrej Varlagin, Alma Vazquez-Lule, Joseph G. Verfaillie, Timo Vesala, George L. Vourlitis, Eric J. Ward, Christian Wille, Georg Wohlfahrt, Guan Xhuan Wong, Zhen Zhang, Donatella Zona, Lisamarie Windham-Myers, Benjamin Poulter, and Robert B. Jackson
Earth Syst. Sci. Data, 13, 3607–3689, https://doi.org/10.5194/essd-13-3607-2021, https://doi.org/10.5194/essd-13-3607-2021, 2021
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Methane is an important greenhouse gas, yet we lack knowledge about its global emissions and drivers. We present FLUXNET-CH4, a new global collection of methane measurements and a critical resource for the research community. We use FLUXNET-CH4 data to quantify the seasonality of methane emissions from freshwater wetlands, finding that methane seasonality varies strongly with latitude. Our new database and analysis will improve wetland model accuracy and inform greenhouse gas budgets.
Toprak Aslan, Olli Peltola, Andreas Ibrom, Eiko Nemitz, Üllar Rannik, and Ivan Mammarella
Atmos. Meas. Tech., 14, 5089–5106, https://doi.org/10.5194/amt-14-5089-2021, https://doi.org/10.5194/amt-14-5089-2021, 2021
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Vertical turbulent fluxes of gases measured by the eddy covariance (EC) technique are subject to high-frequency losses. There are different methods used to describe this low-pass filtering effect and to correct the measured fluxes. In this study, we analysed the systematic uncertainty related to this correction for various attenuation and signal-to-noise ratios. A new and robust transfer function method is finally proposed.
Olli Peltola, Toprak Aslan, Andreas Ibrom, Eiko Nemitz, Üllar Rannik, and Ivan Mammarella
Atmos. Meas. Tech., 14, 5071–5088, https://doi.org/10.5194/amt-14-5071-2021, https://doi.org/10.5194/amt-14-5071-2021, 2021
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Gas fluxes measured by the eddy covariance (EC) technique are subject to filtering due to non-ideal instrumentation. For linear first-order systems this filtering causes also a time lag between vertical wind speed and gas signal which is additional to the gas travel time in the sampling line. The effect of this additional time lag on EC fluxes is ignored in current EC data processing routines. Here we show that this oversight biases EC fluxes and hence propose an approach to rectify this bias.
Simon Rosanka, Bruno Franco, Lieven Clarisse, Pierre-François Coheur, Andrea Pozzer, Andreas Wahner, and Domenico Taraborrelli
Atmos. Chem. Phys., 21, 11257–11288, https://doi.org/10.5194/acp-21-11257-2021, https://doi.org/10.5194/acp-21-11257-2021, 2021
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The strong El Niño in 2015 led to a particular dry season in Indonesia and favoured severe peatland fires. The smouldering conditions of these fires and the high carbon content of peat resulted in high volatile organic compound (VOC) emissions. By using a comprehensive atmospheric model, we show that these emissions have a significant impact on the tropospheric composition and oxidation capacity. These emissions are transported into to the lower stratosphere, resulting in a depletion of ozone.
Tamara Emmerichs, Bruno Franco, Catherine Wespes, Vinod Kumar, Andrea Pozzer, Simon Rosanka, and Domenico Taraborrelli
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2021-584, https://doi.org/10.5194/acp-2021-584, 2021
Revised manuscript not accepted
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Near-surface ozone is a harmful air pollutant and it is strongly affected by radical reactions and surface-atmosphere exchanges which in turn are modulated, directly and indirectly, by weather. Understanding the impact of weather on ozone, and air quality, is thus important also in view of weather extremes. The inclusion of additional ozone-weather links in the global model yields a 2-fold reduction of the ozone bias towards satellite observations.
Simon Rosanka, Rolf Sander, Andreas Wahner, and Domenico Taraborrelli
Geosci. Model Dev., 14, 4103–4115, https://doi.org/10.5194/gmd-14-4103-2021, https://doi.org/10.5194/gmd-14-4103-2021, 2021
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The Jülich Aqueous-phase Mechanism of Organic Chemistry (JAMOC) is developed and implemented into the Module Efficiently Calculating the Chemistry of the Atmosphere (MECCA). JAMOC is an explicit in-cloud oxidation scheme for oxygenated volatile organic compounds (OVOCs), which is suitable for global model applications. Within a box-model study, we show that JAMOC yields reduced gas-phase concentrations of most OVOCs and oxidants, except for nitrogen oxides.
Simon Rosanka, Rolf Sander, Bruno Franco, Catherine Wespes, Andreas Wahner, and Domenico Taraborrelli
Atmos. Chem. Phys., 21, 9909–9930, https://doi.org/10.5194/acp-21-9909-2021, https://doi.org/10.5194/acp-21-9909-2021, 2021
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In-cloud destruction of ozone depends on hydroperoxyl radicals in cloud droplets, where they are produced by oxygenated volatile organic compound (OVOC) oxygenation. Only rudimentary representations of these processes, if any, are currently available in global atmospheric models. By using a comprehensive atmospheric model that includes a complex in-cloud OVOC oxidation scheme, we show that atmospheric oxidants are reduced and models ignoring this process will underpredict clouds as ozone sinks.
Anna B. Harper, Karina E. Williams, Patrick C. McGuire, Maria Carolina Duran Rojas, Debbie Hemming, Anne Verhoef, Chris Huntingford, Lucy Rowland, Toby Marthews, Cleiton Breder Eller, Camilla Mathison, Rodolfo L. B. Nobrega, Nicola Gedney, Pier Luigi Vidale, Fred Otu-Larbi, Divya Pandey, Sebastien Garrigues, Azin Wright, Darren Slevin, Martin G. De Kauwe, Eleanor Blyth, Jonas Ardö, Andrew Black, Damien Bonal, Nina Buchmann, Benoit Burban, Kathrin Fuchs, Agnès de Grandcourt, Ivan Mammarella, Lutz Merbold, Leonardo Montagnani, Yann Nouvellon, Natalia Restrepo-Coupe, and Georg Wohlfahrt
Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, https://doi.org/10.5194/gmd-14-3269-2021, 2021
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We evaluated 10 representations of soil moisture stress in the JULES land surface model against site observations of GPP and latent heat flux. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES. In addition, using soil matric potential presents the opportunity to include parameters specific to plant functional type to further improve modeled fluxes.
Domenico Taraborrelli, David Cabrera-Perez, Sara Bacer, Sergey Gromov, Jos Lelieveld, Rolf Sander, and Andrea Pozzer
Atmos. Chem. Phys., 21, 2615–2636, https://doi.org/10.5194/acp-21-2615-2021, https://doi.org/10.5194/acp-21-2615-2021, 2021
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Atmospheric pollutants from anthropogenic activities and biomass burning are usually regarded as ozone precursors. Monocyclic aromatics are no exception. Calculations with a comprehensive atmospheric model are consistent with this view but only for air masses close to pollution source regions. However, the same model predicts that aromatics, when transported to remote areas, may effectively destroy ozone. This loss of tropospheric ozone rivals the one attributed to bromine.
Jan Pisek, Angela Erb, Lauri Korhonen, Tobias Biermann, Arnaud Carrara, Edoardo Cremonese, Matthias Cuntz, Silvano Fares, Giacomo Gerosa, Thomas Grünwald, Niklas Hase, Michal Heliasz, Andreas Ibrom, Alexander Knohl, Johannes Kobler, Bart Kruijt, Holger Lange, Leena Leppänen, Jean-Marc Limousin, Francisco Ramon Lopez Serrano, Denis Loustau, Petr Lukeš, Lars Lundin, Riccardo Marzuoli, Meelis Mölder, Leonardo Montagnani, Johan Neirynck, Matthias Peichl, Corinna Rebmann, Eva Rubio, Margarida Santos-Reis, Crystal Schaaf, Marius Schmidt, Guillaume Simioni, Kamel Soudani, and Caroline Vincke
Biogeosciences, 18, 621–635, https://doi.org/10.5194/bg-18-621-2021, https://doi.org/10.5194/bg-18-621-2021, 2021
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Understory vegetation is the most diverse, least understood component of forests worldwide. Understory communities are important drivers of overstory succession and nutrient cycling. Multi-angle remote sensing enables us to describe surface properties by means that are not possible when using mono-angle data. Evaluated over an extensive set of forest ecosystem experimental sites in Europe, our reported method can deliver good retrievals, especially over different forest types with open canopies.
Camille Yver-Kwok, Carole Philippon, Peter Bergamaschi, Tobias Biermann, Francescopiero Calzolari, Huilin Chen, Sebastien Conil, Paolo Cristofanelli, Marc Delmotte, Juha Hatakka, Michal Heliasz, Ove Hermansen, Kateřina Komínková, Dagmar Kubistin, Nicolas Kumps, Olivier Laurent, Tuomas Laurila, Irene Lehner, Janne Levula, Matthias Lindauer, Morgan Lopez, Ivan Mammarella, Giovanni Manca, Per Marklund, Jean-Marc Metzger, Meelis Mölder, Stephen M. Platt, Michel Ramonet, Leonard Rivier, Bert Scheeren, Mahesh Kumar Sha, Paul Smith, Martin Steinbacher, Gabriela Vítková, and Simon Wyss
Atmos. Meas. Tech., 14, 89–116, https://doi.org/10.5194/amt-14-89-2021, https://doi.org/10.5194/amt-14-89-2021, 2021
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The Integrated Carbon Observation System (ICOS) is a pan-European research infrastructure which provides harmonized and high-precision scientific data on the carbon cycle and the greenhouse gas (GHG) budget. All stations have to undergo a rigorous assessment before being labeled, i.e., receiving approval to join the network. In this paper, we present the labeling process for the ICOS atmospheric network through the 23 stations that were labeled between November 2017 and November 2019.
Yuan Zhang, Ana Bastos, Fabienne Maignan, Daniel Goll, Olivier Boucher, Laurent Li, Alessandro Cescatti, Nicolas Vuichard, Xiuzhi Chen, Christof Ammann, M. Altaf Arain, T. Andrew Black, Bogdan Chojnicki, Tomomichi Kato, Ivan Mammarella, Leonardo Montagnani, Olivier Roupsard, Maria J. Sanz, Lukas Siebicke, Marek Urbaniak, Francesco Primo Vaccari, Georg Wohlfahrt, Will Woodgate, and Philippe Ciais
Geosci. Model Dev., 13, 5401–5423, https://doi.org/10.5194/gmd-13-5401-2020, https://doi.org/10.5194/gmd-13-5401-2020, 2020
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We improved the ORCHIDEE LSM by distinguishing diffuse and direct light in canopy and evaluated the new model with observations from 159 sites. Compared with the old model, the new model has better sunny GPP and reproduced the diffuse light fertilization effect observed at flux sites. Our simulations also indicate different mechanisms causing the observed GPP enhancement under cloudy conditions at different times. The new model has the potential to study large-scale impacts of aerosol changes.
Kukka-Maaria Kohonen, Pasi Kolari, Linda M. J. Kooijmans, Huilin Chen, Ulli Seibt, Wu Sun, and Ivan Mammarella
Atmos. Meas. Tech., 13, 3957–3975, https://doi.org/10.5194/amt-13-3957-2020, https://doi.org/10.5194/amt-13-3957-2020, 2020
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Biosphere–atmosphere gas exchange (flux) measurements of carbonyl sulfide (COS) are becoming popular for estimating biospheric photosynthesis. To compare COS flux measurements across different measurement sites, we need standardized protocols for data processing. We analyze how various data processing steps affect the calculated COS flux and how they differ from carbon dioxide (CO2) flux processing steps, and we aim to settle on a set of recommended protocols for COS flux calculation.
Xuefei Li, Outi Wahlroos, Sami Haapanala, Jukka Pumpanen, Harri Vasander, Anne Ojala, Timo Vesala, and Ivan Mammarella
Biogeosciences, 17, 3409–3425, https://doi.org/10.5194/bg-17-3409-2020, https://doi.org/10.5194/bg-17-3409-2020, 2020
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We measured CO2 and CH4 fluxes and quantified the global warming potential of different surface areas in a recently created urban wetland in Southern Finland. The ecosystem has a small net climate warming effect which was mainly contributed by the open-water areas. Our results suggest that limiting open-water areas and setting a design preference for areas of emergent vegetation in the establishment of urban wetlands can be a beneficial practice when considering solely the climate impact.
Mariano Mertens, Astrid Kerkweg, Volker Grewe, Patrick Jöckel, and Robert Sausen
Atmos. Chem. Phys., 20, 7843–7873, https://doi.org/10.5194/acp-20-7843-2020, https://doi.org/10.5194/acp-20-7843-2020, 2020
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We investigate the contribution of land transport emissions to ozone and ozone precursors in Europe and Germany. Our results show that land transport emissions are one of the most important contributors to reactive nitrogen in Europe. The contribution to ozone is in the range of 8 % to 16 % and varies strongly for different seasons. The hots-pots with the largest ozone concentrations are the Po Valley, while the largest concentration to reactive nitrogen is located mainly in western Europe.
Christopher P. O. Reyer, Ramiro Silveyra Gonzalez, Klara Dolos, Florian Hartig, Ylva Hauf, Matthias Noack, Petra Lasch-Born, Thomas Rötzer, Hans Pretzsch, Henning Meesenburg, Stefan Fleck, Markus Wagner, Andreas Bolte, Tanja G. M. Sanders, Pasi Kolari, Annikki Mäkelä, Timo Vesala, Ivan Mammarella, Jukka Pumpanen, Alessio Collalti, Carlo Trotta, Giorgio Matteucci, Ettore D'Andrea, Lenka Foltýnová, Jan Krejza, Andreas Ibrom, Kim Pilegaard, Denis Loustau, Jean-Marc Bonnefond, Paul Berbigier, Delphine Picart, Sébastien Lafont, Michael Dietze, David Cameron, Massimo Vieno, Hanqin Tian, Alicia Palacios-Orueta, Victor Cicuendez, Laura Recuero, Klaus Wiese, Matthias Büchner, Stefan Lange, Jan Volkholz, Hyungjun Kim, Joanna A. Horemans, Friedrich Bohn, Jörg Steinkamp, Alexander Chikalanov, Graham P. Weedon, Justin Sheffield, Flurin Babst, Iliusi Vega del Valle, Felicitas Suckow, Simon Martel, Mats Mahnken, Martin Gutsch, and Katja Frieler
Earth Syst. Sci. Data, 12, 1295–1320, https://doi.org/10.5194/essd-12-1295-2020, https://doi.org/10.5194/essd-12-1295-2020, 2020
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Process-based vegetation models are widely used to predict local and global ecosystem dynamics and climate change impacts. Due to their complexity, they require careful parameterization and evaluation to ensure that projections are accurate and reliable. The PROFOUND Database provides a wide range of empirical data to calibrate and evaluate vegetation models that simulate climate impacts at the forest stand scale to support systematic model intercomparisons and model development in Europe.
Simon Rosanka, Giang H. T. Vu, Hue M. T. Nguyen, Tien V. Pham, Umar Javed, Domenico Taraborrelli, and Luc Vereecken
Atmos. Chem. Phys., 20, 6671–6686, https://doi.org/10.5194/acp-20-6671-2020, https://doi.org/10.5194/acp-20-6671-2020, 2020
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Isocyanic acid, HNCO, is a toxic chemical compound emitted to the atmosphere by biomass burning and by unwanted release in NOx mitigation systems in vehicles such as the AdBlue system. We have studied the loss processes of HNCO, finding that it is unreactive to most atmospheric oxidants and thus has a long chemical lifetime. The main removal is then by deposition on surfaces and transition to aqueous phase, such as clouds. The long lifetime also allows it to be transported to the stratosphere.
Anna-Leah Nickl, Mariano Mertens, Anke Roiger, Andreas Fix, Axel Amediek, Alina Fiehn, Christoph Gerbig, Michal Galkowski, Astrid Kerkweg, Theresa Klausner, Maximilian Eckl, and Patrick Jöckel
Geosci. Model Dev., 13, 1925–1943, https://doi.org/10.5194/gmd-13-1925-2020, https://doi.org/10.5194/gmd-13-1925-2020, 2020
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Based on the global and regional chemistry–climate model system MECO(n), we implemented a forecast system to support the planning of measurement campaign research flights with chemical weather forecasts. We applied this system for the first time to provide 6 d forecasts in support of the CoMet 1.0
campaign targeting methane emitted from coal mining ventilation shafts in the Upper Silesian Coal Basin in Poland. We describe the new forecast system and evaluate its forecast skill.
Anna Novelli, Luc Vereecken, Birger Bohn, Hans-Peter Dorn, Georgios I. Gkatzelis, Andreas Hofzumahaus, Frank Holland, David Reimer, Franz Rohrer, Simon Rosanka, Domenico Taraborrelli, Ralf Tillmann, Robert Wegener, Zhujun Yu, Astrid Kiendler-Scharr, Andreas Wahner, and Hendrik Fuchs
Atmos. Chem. Phys., 20, 3333–3355, https://doi.org/10.5194/acp-20-3333-2020, https://doi.org/10.5194/acp-20-3333-2020, 2020
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Experimental evidence from a simulation chamber study shows that the regeneration efficiency of the hydroxyl radical is maintained globally at values higher than 0.5 for a wide range of nitrogen oxide concentrations as a result of isomerizations of peroxy radicals originating from the OH oxidation of isoprene. The available models were tested, and suggestions on how to improve their ability to reproduce the measured radical and oxygenated volatile organic compound concentrations are provided.
Mariano Mertens, Astrid Kerkweg, Volker Grewe, Patrick Jöckel, and Robert Sausen
Geosci. Model Dev., 13, 363–383, https://doi.org/10.5194/gmd-13-363-2020, https://doi.org/10.5194/gmd-13-363-2020, 2020
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This study investigates if ozone source apportionment results using a tagged tracer approach depend on the resolutions of the applied model and/or emission inventory. For this we apply a global to regional atmospheric chemistry model, which allows us to compare the results on global and regional scales. Our results show that differences on the continental scale (e.g. Europe) are rather small (10 %); on the regional scale, however, differences of up to 30 % were found.
Paul C. Stoy, Tarek S. El-Madany, Joshua B. Fisher, Pierre Gentine, Tobias Gerken, Stephen P. Good, Anne Klosterhalfen, Shuguang Liu, Diego G. Miralles, Oscar Perez-Priego, Angela J. Rigden, Todd H. Skaggs, Georg Wohlfahrt, Ray G. Anderson, A. Miriam J. Coenders-Gerrits, Martin Jung, Wouter H. Maes, Ivan Mammarella, Matthias Mauder, Mirco Migliavacca, Jacob A. Nelson, Rafael Poyatos, Markus Reichstein, Russell L. Scott, and Sebastian Wolf
Biogeosciences, 16, 3747–3775, https://doi.org/10.5194/bg-16-3747-2019, https://doi.org/10.5194/bg-16-3747-2019, 2019
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Key findings are the nearly optimal response of T to atmospheric water vapor pressure deficits across methods and scales. Additionally, the notion that T / ET intermittently approaches 1, which is a basis for many partitioning methods, does not hold for certain methods and ecosystems. To better constrain estimates of E and T from combined ET measurements, we propose a combination of independent measurement techniques to better constrain E and T at the ecosystem scale.
Jarmo Mäkelä, Jürgen Knauer, Mika Aurela, Andrew Black, Martin Heimann, Hideki Kobayashi, Annalea Lohila, Ivan Mammarella, Hank Margolis, Tiina Markkanen, Jouni Susiluoto, Tea Thum, Toni Viskari, Sönke Zaehle, and Tuula Aalto
Geosci. Model Dev., 12, 4075–4098, https://doi.org/10.5194/gmd-12-4075-2019, https://doi.org/10.5194/gmd-12-4075-2019, 2019
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We assess the differences of six stomatal conductance formulations, embedded into a land–vegetation model JSBACH, on 10 boreal coniferous evergreen forest sites. We calibrate the model parameters using all six functions in a multi-year experiment, as well as for a separate drought event at one of the sites, using the adaptive population importance sampler. The analysis reveals weaknesses in the stomatal conductance formulation-dependent model behaviour that we are able to partially amend.
Petri Kiuru, Anne Ojala, Ivan Mammarella, Jouni Heiskanen, Kukka-Maaria Erkkilä, Heli Miettinen, Timo Vesala, and Timo Huttula
Biogeosciences, 16, 3297–3317, https://doi.org/10.5194/bg-16-3297-2019, https://doi.org/10.5194/bg-16-3297-2019, 2019
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Many boreal lakes emit the greenhouse gas carbon dioxide (CO2) to the atmosphere. We incorporated four different gas exchange models into a physico-biochemical lake model and studied their ability to simulate lake air–water CO2 fluxes. The inclusion of refined gas exchange models in lake models that simulate carbon cycling is important to assess lake carbon budgets. However, higher estimates for inorganic carbon sources in boreal lakes are needed to balance the CO2 losses to the atmosphere.
Olli Peltola, Timo Vesala, Yao Gao, Olle Räty, Pavel Alekseychik, Mika Aurela, Bogdan Chojnicki, Ankur R. Desai, Albertus J. Dolman, Eugenie S. Euskirchen, Thomas Friborg, Mathias Göckede, Manuel Helbig, Elyn Humphreys, Robert B. Jackson, Georg Jocher, Fortunat Joos, Janina Klatt, Sara H. Knox, Natalia Kowalska, Lars Kutzbach, Sebastian Lienert, Annalea Lohila, Ivan Mammarella, Daniel F. Nadeau, Mats B. Nilsson, Walter C. Oechel, Matthias Peichl, Thomas Pypker, William Quinton, Janne Rinne, Torsten Sachs, Mateusz Samson, Hans Peter Schmid, Oliver Sonnentag, Christian Wille, Donatella Zona, and Tuula Aalto
Earth Syst. Sci. Data, 11, 1263–1289, https://doi.org/10.5194/essd-11-1263-2019, https://doi.org/10.5194/essd-11-1263-2019, 2019
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Here we develop a monthly gridded dataset of northern (> 45 N) wetland methane (CH4) emissions. The data product is derived using a random forest machine-learning technique and eddy covariance CH4 fluxes from 25 wetland sites. Annual CH4 emissions from these wetlands calculated from the derived data product are comparable to prior studies focusing on these areas. This product is an independent estimate of northern wetland CH4 emissions and hence could be used, e.g. for process model evaluation.
Elisa Männistö, Aino Korrensalo, Pavel Alekseychik, Ivan Mammarella, Olli Peltola, Timo Vesala, and Eeva-Stiina Tuittila
Biogeosciences, 16, 2409–2421, https://doi.org/10.5194/bg-16-2409-2019, https://doi.org/10.5194/bg-16-2409-2019, 2019
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We studied methane emitted as episodic bubble release (ebullition) from water and bare peat surfaces of a boreal bog over three years. There was more ebullition from water than from bare peat surfaces, and it was controlled by peat temperature, water level, atmospheric pressure and the weekly temperature sum. However, the contribution of methane bubbles to the total ecosystem methane emission was small. This new information can be used to improve process models of peatland methane dynamics.
Rolf Sander, Andreas Baumgaertner, David Cabrera-Perez, Franziska Frank, Sergey Gromov, Jens-Uwe Grooß, Hartwig Harder, Vincent Huijnen, Patrick Jöckel, Vlassis A. Karydis, Kyle E. Niemeyer, Andrea Pozzer, Hella Riede, Martin G. Schultz, Domenico Taraborrelli, and Sebastian Tauer
Geosci. Model Dev., 12, 1365–1385, https://doi.org/10.5194/gmd-12-1365-2019, https://doi.org/10.5194/gmd-12-1365-2019, 2019
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We present the atmospheric chemistry box model CAABA/MECCA which
now includes a number of new features: skeletal mechanism
reduction, the MOM chemical mechanism for volatile organic
compounds, an option to include reactions from the Master
Chemical Mechanism (MCM) and other chemical mechanisms, updated
isotope tagging, improved and new photolysis modules, and the new
feature of coexisting multiple chemistry mechanisms.
CAABA/MECCA is a community model published under the GPL.
Angelo Finco, Mhairi Coyle, Eiko Nemitz, Riccardo Marzuoli, Maria Chiesa, Benjamin Loubet, Silvano Fares, Eugenio Diaz-Pines, Rainer Gasche, and Giacomo Gerosa
Atmos. Chem. Phys., 18, 17945–17961, https://doi.org/10.5194/acp-18-17945-2018, https://doi.org/10.5194/acp-18-17945-2018, 2018
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A 1-month field campaign of ozone (O3) flux measurements along a five-level vertical profile of a mature broadleaf forest highlighted that the biosphere–atmosphere exchange of this pollutant is modulated by complex diel dynamics occurring within and below the canopy. The canopy removed nearly 80 % of the O3 deposited to the forest; only a minor part was removed by the soil and the understorey (2 %), while the remaining 18.2 % was removed by chemical reactions with NO mostly emitted from soil.
Ekaterina Ezhova, Ilona Ylivinkka, Joel Kuusk, Kaupo Komsaare, Marko Vana, Alisa Krasnova, Steffen Noe, Mikhail Arshinov, Boris Belan, Sung-Bin Park, Jošt Valentin Lavrič, Martin Heimann, Tuukka Petäjä, Timo Vesala, Ivan Mammarella, Pasi Kolari, Jaana Bäck, Üllar Rannik, Veli-Matti Kerminen, and Markku Kulmala
Atmos. Chem. Phys., 18, 17863–17881, https://doi.org/10.5194/acp-18-17863-2018, https://doi.org/10.5194/acp-18-17863-2018, 2018
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Understanding the connections between aerosols, solar radiation and photosynthesis in terrestrial ecosystems is important for estimates of the CO2 balance in the atmosphere. Atmospheric aerosols and clouds influence solar radiation. In this study, we quantify the aerosol effect on solar radiation in boreal forests and study forest ecosystems response to this change in the radiation conditions. The analysis is based on atmospheric observations from several remote stations in Eurasian forests.
Qiaozhi Zha, Chao Yan, Heikki Junninen, Matthieu Riva, Nina Sarnela, Juho Aalto, Lauriane Quéléver, Simon Schallhart, Lubna Dada, Liine Heikkinen, Otso Peräkylä, Jun Zou, Clémence Rose, Yonghong Wang, Ivan Mammarella, Gabriel Katul, Timo Vesala, Douglas R. Worsnop, Markku Kulmala, Tuukka Petäjä, Federico Bianchi, and Mikael Ehn
Atmos. Chem. Phys., 18, 17437–17450, https://doi.org/10.5194/acp-18-17437-2018, https://doi.org/10.5194/acp-18-17437-2018, 2018
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Vertical measurements of highly oxygenated molecules (HOMs) below and above the forest canopy were performed for the first time in a boreal forest during September 2016. Our results highlight that near-ground HOM measurements may only be representative of a small fraction of the entire nocturnal boundary layer, which may sequentially influence the growth of newly formed particles and SOA formation close to ground surface, where the majority of measurements are conducted.
Pertti Hari, Steffen Noe, Sigrid Dengel, Jan Elbers, Bert Gielen, Veli-Matti Kerminen, Bart Kruijt, Liisa Kulmala, Anders Lindroth, Ivan Mammarella, Tuukka Petäjä, Guy Schurgers, Anni Vanhatalo, Markku Kulmala, and Jaana Bäck
Atmos. Chem. Phys., 18, 13321–13328, https://doi.org/10.5194/acp-18-13321-2018, https://doi.org/10.5194/acp-18-13321-2018, 2018
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The development of eddy-covariance measurements of ecosystem CO2 fluxes began a new era in the field studies of photosynthesis. The interpretation of the very variable CO2 fluxes in evergreen forests has been problematic especially in seasonal transition times. We apply two theoretical needle-level equations and show they can predict photosynthetic CO2 flux between the atmosphere and Scots pine forests. This has strong implications for the interpretation of the global change and boreal forests.
Jason A. Ducker, Christopher D. Holmes, Trevor F. Keenan, Silvano Fares, Allen H. Goldstein, Ivan Mammarella, J. William Munger, and Jordan Schnell
Biogeosciences, 15, 5395–5413, https://doi.org/10.5194/bg-15-5395-2018, https://doi.org/10.5194/bg-15-5395-2018, 2018
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We have developed an accurate method (SynFlux) to estimate ozone deposition and stomatal uptake across 103 flux tower sites (43 US, 60 Europe), where ozone concentrations and fluxes have not been measured. In all, the SynFlux public dataset provides monthly values of ozone dry deposition for 926 site years across a wide array of ecosystems. The SynFlux dataset will promote further applications to ecosystem, air quality, or climate modeling across the geoscience community.
Scarlet Stadtler, Thomas Kühn, Sabine Schröder, Domenico Taraborrelli, Martin G. Schultz, and Harri Kokkola
Geosci. Model Dev., 11, 3235–3260, https://doi.org/10.5194/gmd-11-3235-2018, https://doi.org/10.5194/gmd-11-3235-2018, 2018
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Atmospheric aerosols interact with our climate system and have adverse health effects. Nevertheless, these particles are a source of uncertainty in climate projections and the formation process of secondary aerosols formed by organic gas-phase precursors is particularly not fully understood. In order to gain a deeper understanding of secondary organic aerosol formation, this model system explicitly represents gas-phase and aerosol formation processes. Finally, this allows for process discussion.
Maarten Krol, Marco de Bruine, Lars Killaars, Huug Ouwersloot, Andrea Pozzer, Yi Yin, Frederic Chevallier, Philippe Bousquet, Prabir Patra, Dmitry Belikov, Shamil Maksyutov, Sandip Dhomse, Wuhu Feng, and Martyn P. Chipperfield
Geosci. Model Dev., 11, 3109–3130, https://doi.org/10.5194/gmd-11-3109-2018, https://doi.org/10.5194/gmd-11-3109-2018, 2018
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The TransCom inter-comparison project regularly carries out studies to quantify errors in simulated atmospheric transport. This paper presents the first results of an age of air (AoA) inter-comparison of six global transport models. Following a protocol, six models simulated five tracers from which atmospheric transport times can easily be deduced. Results highlight that inter-model differences associated with atmospheric transport are still large and require further analysis.
Chinmay Mallik, Laura Tomsche, Efstratios Bourtsoukidis, John N. Crowley, Bettina Derstroff, Horst Fischer, Sascha Hafermann, Imke Hüser, Umar Javed, Stephan Keßel, Jos Lelieveld, Monica Martinez, Hannah Meusel, Anna Novelli, Gavin J. Phillips, Andrea Pozzer, Andreas Reiffs, Rolf Sander, Domenico Taraborrelli, Carina Sauvage, Jan Schuladen, Hang Su, Jonathan Williams, and Hartwig Harder
Atmos. Chem. Phys., 18, 10825–10847, https://doi.org/10.5194/acp-18-10825-2018, https://doi.org/10.5194/acp-18-10825-2018, 2018
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OH and HO2 control the transformation of air pollutants and O3 formation. Their implication for air quality over the climatically sensitive Mediterranean region was studied during a field campaign in Cyprus. Production of OH, HO2, and recycled OH was lower in aged marine air masses. Box model simulations of OH and HO2 agreed with measurements except at high terpene concentrations when model RO2 due to terpenes caused large HO2 loss. Autoxidation schemes for RO2 improved the agreement.
Mary E. Whelan, Sinikka T. Lennartz, Teresa E. Gimeno, Richard Wehr, Georg Wohlfahrt, Yuting Wang, Linda M. J. Kooijmans, Timothy W. Hilton, Sauveur Belviso, Philippe Peylin, Róisín Commane, Wu Sun, Huilin Chen, Le Kuai, Ivan Mammarella, Kadmiel Maseyk, Max Berkelhammer, King-Fai Li, Dan Yakir, Andrew Zumkehr, Yoko Katayama, Jérôme Ogée, Felix M. Spielmann, Florian Kitz, Bharat Rastogi, Jürgen Kesselmeier, Julia Marshall, Kukka-Maaria Erkkilä, Lisa Wingate, Laura K. Meredith, Wei He, Rüdiger Bunk, Thomas Launois, Timo Vesala, Johan A. Schmidt, Cédric G. Fichot, Ulli Seibt, Scott Saleska, Eric S. Saltzman, Stephen A. Montzka, Joseph A. Berry, and J. Elliott Campbell
Biogeosciences, 15, 3625–3657, https://doi.org/10.5194/bg-15-3625-2018, https://doi.org/10.5194/bg-15-3625-2018, 2018
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Measurements of the trace gas carbonyl sulfide (OCS) are helpful in quantifying photosynthesis at previously unknowable temporal and spatial scales. While CO2 is both consumed and produced within ecosystems, OCS is mostly produced in the oceans or from specific industries, and destroyed in plant leaves in proportion to CO2. This review summarizes the advancements we have made in the understanding of OCS exchange and applications to vital ecosystem water and carbon cycle questions.
Martin G. Schultz, Scarlet Stadtler, Sabine Schröder, Domenico Taraborrelli, Bruno Franco, Jonathan Krefting, Alexandra Henrot, Sylvaine Ferrachat, Ulrike Lohmann, David Neubauer, Colombe Siegenthaler-Le Drian, Sebastian Wahl, Harri Kokkola, Thomas Kühn, Sebastian Rast, Hauke Schmidt, Philip Stier, Doug Kinnison, Geoffrey S. Tyndall, John J. Orlando, and Catherine Wespes
Geosci. Model Dev., 11, 1695–1723, https://doi.org/10.5194/gmd-11-1695-2018, https://doi.org/10.5194/gmd-11-1695-2018, 2018
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The chemistry–climate model ECHAM-HAMMOZ contains a detailed representation of tropospheric and stratospheric reactive chemistry and state-of-the-art parameterizations of aerosols. It thus allows for detailed investigations of chemical processes in the climate system. Evaluation of the model with various observational data yields good results, but the model has a tendency to produce too much OH in the tropics. This highlights the important interplay between atmospheric chemistry and dynamics.
Maria Provenzale, Anne Ojala, Jouni Heiskanen, Kukka-Maaria Erkkilä, Ivan Mammarella, Pertti Hari, and Timo Vesala
Biogeosciences, 15, 2021–2032, https://doi.org/10.5194/bg-15-2021-2018, https://doi.org/10.5194/bg-15-2021-2018, 2018
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We extensively tested and refined a direct, high-frequency free-water CO2 measurement method to study the lake net ecosystem productivity. The method was first proposed in 2008, but neglected ever since.
With high-frequency direct methods, we can calculate the lake productivity more precisely, and parameterise its dependency on environmental variables. This helps us expand our knowledge on the carbon cycle in the water, and leads to a better integration of water bodies in carbon budgets.
Aino Korrensalo, Elisa Männistö, Pavel Alekseychik, Ivan Mammarella, Janne Rinne, Timo Vesala, and Eeva-Stiina Tuittila
Biogeosciences, 15, 1749–1761, https://doi.org/10.5194/bg-15-1749-2018, https://doi.org/10.5194/bg-15-1749-2018, 2018
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We measured methane fluxes of a boreal bog from six different plant community types in 2012–2014. We found only little variation in methane fluxes among plant community types. Peat temperature as well as both leaf area of plant species with air channels and of all vegetation are important factors controlling the fluxes. We also detected negative net fluxes indicating methane consumption each year. Our results can be used to improve the models of peatland methane dynamics under climate change.
Astrid Kerkweg, Christiane Hofmann, Patrick Jöckel, Mariano Mertens, and Gregor Pante
Geosci. Model Dev., 11, 1059–1076, https://doi.org/10.5194/gmd-11-1059-2018, https://doi.org/10.5194/gmd-11-1059-2018, 2018
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As part of the model documentation of the MECO(n) system, this article documents the basics of the Multi-Model-Driver expansion (MMD v2.0) to two-way coupling and the newly developed generic MESSy submodel GRID (v1.0), which is used by MMD v2.0 for the generalised definition of arbitrary grids and for the
transformation of data between them.
Scarlet Stadtler, David Simpson, Sabine Schröder, Domenico Taraborrelli, Andreas Bott, and Martin Schultz
Atmos. Chem. Phys., 18, 3147–3171, https://doi.org/10.5194/acp-18-3147-2018, https://doi.org/10.5194/acp-18-3147-2018, 2018
Chunjing Qiu, Dan Zhu, Philippe Ciais, Bertrand Guenet, Gerhard Krinner, Shushi Peng, Mika Aurela, Christian Bernhofer, Christian Brümmer, Syndonia Bret-Harte, Housen Chu, Jiquan Chen, Ankur R. Desai, Jiří Dušek, Eugénie S. Euskirchen, Krzysztof Fortuniak, Lawrence B. Flanagan, Thomas Friborg, Mateusz Grygoruk, Sébastien Gogo, Thomas Grünwald, Birger U. Hansen, David Holl, Elyn Humphreys, Miriam Hurkuck, Gerard Kiely, Janina Klatt, Lars Kutzbach, Chloé Largeron, Fatima Laggoun-Défarge, Magnus Lund, Peter M. Lafleur, Xuefei Li, Ivan Mammarella, Lutz Merbold, Mats B. Nilsson, Janusz Olejnik, Mikaell Ottosson-Löfvenius, Walter Oechel, Frans-Jan W. Parmentier, Matthias Peichl, Norbert Pirk, Olli Peltola, Włodzimierz Pawlak, Daniel Rasse, Janne Rinne, Gaius Shaver, Hans Peter Schmid, Matteo Sottocornola, Rainer Steinbrecher, Torsten Sachs, Marek Urbaniak, Donatella Zona, and Klaudia Ziemblinska
Geosci. Model Dev., 11, 497–519, https://doi.org/10.5194/gmd-11-497-2018, https://doi.org/10.5194/gmd-11-497-2018, 2018
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Northern peatlands store large amount of soil carbon and are vulnerable to climate change. We implemented peatland hydrological and carbon accumulation processes into the ORCHIDEE land surface model. The model was evaluated against EC measurements from 30 northern peatland sites. The model generally well reproduced the spatial gradient and temporal variations in GPP and NEE at these sites. Water table depth was not well predicted but had only small influence on simulated NEE.
Wu Sun, Linda M. J. Kooijmans, Kadmiel Maseyk, Huilin Chen, Ivan Mammarella, Timo Vesala, Janne Levula, Helmi Keskinen, and Ulli Seibt
Atmos. Chem. Phys., 18, 1363–1378, https://doi.org/10.5194/acp-18-1363-2018, https://doi.org/10.5194/acp-18-1363-2018, 2018
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Most soils consume carbonyl sulfide (COS) and CO due to microbial uptake, but whether boreal forest soils act like this is uncertain. We measured growing season soil COS and CO fluxes in a Finnish pine forest. The soil behaved as a consistent and relatively invariant sink of COS and CO. Uptake rates of COS and CO decrease with soil moisture due to diffusion limitation and increase with respiration because of microbial control. Using COS to infer photosynthesis is not affected by soil COS flux.
Simon Schallhart, Pekka Rantala, Maija K. Kajos, Juho Aalto, Ivan Mammarella, Taina M. Ruuskanen, and Markku Kulmala
Atmos. Chem. Phys., 18, 815–832, https://doi.org/10.5194/acp-18-815-2018, https://doi.org/10.5194/acp-18-815-2018, 2018
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Emissions of volatile organic compounds (VOCs) have impact to air quality, human health and climate. We investigated the development of VOC exchange in a boreal forest between April and June 2013. VOC exchange and diversity increased towards summer, but over 75 % of the biogenic net exchange was driven by methanol, monoterpenes and acetone only. The boreal forest emitted less than 0.2 % carbon in form of VOCs in relation to the carbon uptake.
Kukka-Maaria Erkkilä, Anne Ojala, David Bastviken, Tobias Biermann, Jouni J. Heiskanen, Anders Lindroth, Olli Peltola, Miitta Rantakari, Timo Vesala, and Ivan Mammarella
Biogeosciences, 15, 429–445, https://doi.org/10.5194/bg-15-429-2018, https://doi.org/10.5194/bg-15-429-2018, 2018
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Global estimates of freshwater greenhouse gas emissions are usually based on simple gas transfer models that underestimate the emissions. Thus, comparison of different gas transfer models is required for evaluating the uncertainties. This study compares three commonly used methods for estimating greenhouse gas emissions over lakes. We conclude that simple gas transfer models underestimate the emissions and more recent models should be used for global freshwater greenhouse gas emission estimates.
Ben Langford, James Cash, W. Joe F. Acton, Amy C. Valach, C. Nicholas Hewitt, Silvano Fares, Ignacio Goded, Carsten Gruening, Emily House, Athina-Cerise Kalogridis, Valérie Gros, Richard Schafers, Rick Thomas, Mark Broadmeadow, and Eiko Nemitz
Biogeosciences, 14, 5571–5594, https://doi.org/10.5194/bg-14-5571-2017, https://doi.org/10.5194/bg-14-5571-2017, 2017
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Isoprene flux measurements made above five European oak forests were reviewed to generate new emission potentials. Six variations of the Guenther algorithms were inverted to back out time series of isoprene emission potential, and then an “average” emission potential was determined using one of four commonly used approaches. Our results show that emission potentials can vary by up to a factor of 4 and highlight the need for the community to now harmonize their approach to reduce uncertainty.
David Cabrera-Perez, Domenico Taraborrelli, Jos Lelieveld, Thorsten Hoffmann, and Andrea Pozzer
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2017-928, https://doi.org/10.5194/acp-2017-928, 2017
Revised manuscript not accepted
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Aromatic compounds are present in rural and urban atmospheres. The aim of this work is to disentangle the impacts of these compounds in different important atmospheric chemical species with the help of a numerical model. Aromatics have low impact OH, NOx and Ozone concentrations in the global scale (below 4 %). The impact however is larger in the regional scale (up to 10 %). The largest impact is in glyoxal and NO3 concentrations, with changes up to 10 % globally and 40 % regionally.
Yao Gao, Tiina Markkanen, Mika Aurela, Ivan Mammarella, Tea Thum, Aki Tsuruta, Huiyi Yang, and Tuula Aalto
Biogeosciences, 14, 4409–4422, https://doi.org/10.5194/bg-14-4409-2017, https://doi.org/10.5194/bg-14-4409-2017, 2017
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We investigated the response of water use efficiency (WUE) to summer drought in a boreal Scots pine forest (Pinus sylvestris) on the daily time scale mainly using EC flux data from the Hyytiälä (southern Finland) flux site. Simulation results from the JSBACH land surface model were also evaluated against the observed results. The performance of three WUE metrics at the ecosystem level (EWUE, IWUE, and uWUE) during the severe summer drought were studied and showed different results.
Linda M. J. Kooijmans, Kadmiel Maseyk, Ulli Seibt, Wu Sun, Timo Vesala, Ivan Mammarella, Pasi Kolari, Juho Aalto, Alessandro Franchin, Roberta Vecchi, Gianluigi Valli, and Huilin Chen
Atmos. Chem. Phys., 17, 11453–11465, https://doi.org/10.5194/acp-17-11453-2017, https://doi.org/10.5194/acp-17-11453-2017, 2017
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Carbon cycle studies rely on the accuracy of models to estimate the amount of CO2 being taken up by vegetation. The gas carbonyl sulfide (COS) can serve as a tool to estimate the vegetative CO2 uptake by scaling the ecosystem uptake of COS to that of CO2. Here we investigate the nighttime fluxes of COS. The relationships found in this study will aid in implementing nighttime COS uptake in models, which is key to obtain accurate estimates of vegetative CO2 uptake with the use of COS.
Pavel Alekseychik, Ivan Mammarella, Dmitry Karpov, Sigrid Dengel, Irina Terentieva, Alexander Sabrekov, Mikhail Glagolev, and Elena Lapshina
Atmos. Chem. Phys., 17, 9333–9345, https://doi.org/10.5194/acp-17-9333-2017, https://doi.org/10.5194/acp-17-9333-2017, 2017
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West Siberian peatlands occupy a large fraction of land area in the region, and yet little is known about their interaction with the atmosphere. We took the first measurements of CO2 and energy surface balances over a typical bog of West Siberian middle taiga, in the vicinity of the Mukhrino field station (Khanty–Mansiysk). The May–August study in a wet year (2015) revealed a relatively large photosynthetic sink of CO2 that was close to the high end of estimates at bog sites elsewhere.
Stephan Keßel, David Cabrera-Perez, Abraham Horowitz, Patrick R. Veres, Rolf Sander, Domenico Taraborrelli, Maria Tucceri, John N. Crowley, Andrea Pozzer, Christof Stönner, Luc Vereecken, Jos Lelieveld, and Jonathan Williams
Atmos. Chem. Phys., 17, 8789–8804, https://doi.org/10.5194/acp-17-8789-2017, https://doi.org/10.5194/acp-17-8789-2017, 2017
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In this study we identify an often overlooked stable oxide of carbon, namely carbon suboxide (C3O2), in ambient air. We have made C3O2 and in the laboratory determined its absorption cross section data and the rate of reaction with two important atmospheric oxidants, OH and O3. By incorporating known sources and sinks in a global model we have generated a first global picture of the distribution of this species in the atmosphere.
Antti-Jussi Kieloaho, Mari Pihlatie, Samuli Launiainen, Markku Kulmala, Marja-Liisa Riekkola, Jevgeni Parshintsev, Ivan Mammarella, Timo Vesala, and Jussi Heinonsalo
Biogeosciences, 14, 1075–1091, https://doi.org/10.5194/bg-14-1075-2017, https://doi.org/10.5194/bg-14-1075-2017, 2017
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The alkylamines are important precursors in secondary aerosol formation in boreal forests. We quantified alkylamine concentrations in fungal species present in boreal forests in order to estimate soil as a source of atmospheric alkylamines. Based on our knowledge we estimated possible soil–atmosphere exchange of these compounds. The results shows that the boreal forest soil could act as a source of alkylamines depending on environmental conditions and studied compound.
Alexandra-Jane Henrot, Tanja Stanelle, Sabine Schröder, Colombe Siegenthaler, Domenico Taraborrelli, and Martin G. Schultz
Geosci. Model Dev., 10, 903–926, https://doi.org/10.5194/gmd-10-903-2017, https://doi.org/10.5194/gmd-10-903-2017, 2017
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This paper describes the basic results of the biogenic emission scheme, based on MEGAN, integrated into the ECHAM6-HAMMOZ chemistry climate model. Sensitivity to vegetation and climate-dependent parameters is also analysed. This version of the model is now suitable for many tropospheric investigations concerning the impact of biogenic volatile organic compound emissions on the ozone budget, secondary aerosol formation, and atmospheric chemistry.
Putian Zhou, Laurens Ganzeveld, Üllar Rannik, Luxi Zhou, Rosa Gierens, Ditte Taipale, Ivan Mammarella, and Michael Boy
Atmos. Chem. Phys., 17, 1361–1379, https://doi.org/10.5194/acp-17-1361-2017, https://doi.org/10.5194/acp-17-1361-2017, 2017
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We implemented a multi-layer O3 dry deposition model in a 1-D model SOSAA to simulate O3 flux and concentration within and above a boreal forest at SMEAR II in Hyytiälä, Finland, in August 2010. The results showed that when RH > 70 % the O3 uptake on leaf wet skin was ~ 51 % to the total deposition at night and ~ 19 % at daytime. The sub-canopy contribution below 4.2 m was ~ 38 % at daytime. The averaged daily chemical contribution to total O3 alteration inside the canopy was less than 10 %.
Aino Korrensalo, Pavel Alekseychik, Tomáš Hájek, Janne Rinne, Timo Vesala, Lauri Mehtätalo, Ivan Mammarella, and Eeva-Stiina Tuittila
Biogeosciences, 14, 257–269, https://doi.org/10.5194/bg-14-257-2017, https://doi.org/10.5194/bg-14-257-2017, 2017
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Photosynthetic parameters of peatland plant species were measured over one growing season in an ombrotrophic bog. Based on these measurements, ecosystem-level photosynthesis was calculated for the whole growing season and compared with an estimate derived from micrometeorological measurements. These two estimates corresponded well. Species with low areal cover at the site but high photosynthetic efficiency appeared to be potentially important for the ecosystem-level carbon balance.
Jarmo Mäkelä, Jouni Susiluoto, Tiina Markkanen, Mika Aurela, Heikki Järvinen, Ivan Mammarella, Stefan Hagemann, and Tuula Aalto
Nonlin. Processes Geophys., 23, 447–465, https://doi.org/10.5194/npg-23-447-2016, https://doi.org/10.5194/npg-23-447-2016, 2016
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The land-based hydrological cycle is one of the key processes controlling the growth and wilting of plants and the amount of carbon vegetation can assimilate. Recent studies have shown that many land surface models have biases in this area. We optimized parameters in one such model (JSBACH) and were able to enhance the model performance in many respects, but the response to drought remained unaffected. Further studies into this aspect should include alternative stomatal conductance formulations.
Üllar Rannik, Olli Peltola, and Ivan Mammarella
Atmos. Meas. Tech., 9, 5163–5181, https://doi.org/10.5194/amt-9-5163-2016, https://doi.org/10.5194/amt-9-5163-2016, 2016
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We review available methods for the random error estimation of turbulent fluxes that are widely used by the flux community. Flux errors are evaluated theoretically as well as via numerical calculations by using measured and simulated records. We recommend two flux random errors with clear physical meaning: the total error resulting from stochastic nature of turbulence, well approximated by the method of Finkelstein and Sims (2001), and the error of the flux due to the instrumental noise.
Ivan Mammarella, Olli Peltola, Annika Nordbo, Leena Järvi, and Üllar Rannik
Atmos. Meas. Tech., 9, 4915–4933, https://doi.org/10.5194/amt-9-4915-2016, https://doi.org/10.5194/amt-9-4915-2016, 2016
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In this study we have performed an inter-comparison between EddyUH and EddyPro, two public and commonly used software packages for eddy covariance data processing and calculation. The aims are to estimate the flux uncertainty due to the use of different software packages, and to assess the most critical processing steps, determining the largest deviations in the calculated fluxes. We focus not only on water vapour and carbon dioxide fluxes, but also on the methane flux.
Mari Pihlatie, Üllar Rannik, Sami Haapanala, Olli Peltola, Narasinha Shurpali, Pertti J. Martikainen, Saara Lind, Niina Hyvönen, Perttu Virkajärvi, Mark Zahniser, and Ivan Mammarella
Biogeosciences, 13, 5471–5485, https://doi.org/10.5194/bg-13-5471-2016, https://doi.org/10.5194/bg-13-5471-2016, 2016
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The sources and sinks of carbon monoxide (CO) in the biosphere are poorly understood. We report the first continuous data series of CO fluxes measured by eddy covariance method in an agricultural bioenergy crop. The CO fluxes were seasonally and diurnally variable demonstrating the parallel consumption and production processes. Radiation was the main driver of CO emissions, and the eddy covariance method was demonstrated as suitable for linking short-term flux dynamics to environmental drivers.
Mariano Mertens, Astrid Kerkweg, Patrick Jöckel, Holger Tost, and Christiane Hofmann
Geosci. Model Dev., 9, 3545–3567, https://doi.org/10.5194/gmd-9-3545-2016, https://doi.org/10.5194/gmd-9-3545-2016, 2016
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This fourth part in a series of publications describing the newly developed regional chemistry–climate system MECO(n) is dedicated to the evaluation of MECO(n) with respect to tropospheric gas-phase chemistry. For this, a simulation incorporating two regional instances, one over Europe with 50 km resolution and one over Germany with 12 km resolution, is conducted. The model results are compared with satellite, ground-based and aircraft in situ observations.
Andrey Glazunov, Üllar Rannik, Victor Stepanenko, Vasily Lykosov, Mikko Auvinen, Timo Vesala, and Ivan Mammarella
Geosci. Model Dev., 9, 2925–2949, https://doi.org/10.5194/gmd-9-2925-2016, https://doi.org/10.5194/gmd-9-2925-2016, 2016
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Large-eddy simulation (LES) and Lagrangian stochastic modeling of passive particle dispersion were applied to the scalar flux footprint determination in the stable atmospheric boundary layer. The footprint functions obtained in LES were compared with the functions calculated with the use of first-order single-particle Lagrangian stochastic models (LSMs) and zeroth-order Lagrangian stochastic models - the random displacement models (RDMs).
W. Joe F. Acton, Simon Schallhart, Ben Langford, Amy Valach, Pekka Rantala, Silvano Fares, Giulia Carriero, Ralf Tillmann, Sam J. Tomlinson, Ulrike Dragosits, Damiano Gianelle, C. Nicholas Hewitt, and Eiko Nemitz
Atmos. Chem. Phys., 16, 7149–7170, https://doi.org/10.5194/acp-16-7149-2016, https://doi.org/10.5194/acp-16-7149-2016, 2016
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Volatile organic compounds (VOCs) represent a large source of reactive carbon in the atmosphere and hence have a significant impact on air quality. It is therefore important that we can accurately quantify their emission. In this paper we use three methods to determine the fluxes of reactive VOCs from a woodland canopy. We show that two different canopy-scale measurement methods give good agreement, whereas estimates based on leaf-level-based emission underestimate isoprene fluxes.
David Cabrera-Perez, Domenico Taraborrelli, Rolf Sander, and Andrea Pozzer
Atmos. Chem. Phys., 16, 6931–6947, https://doi.org/10.5194/acp-16-6931-2016, https://doi.org/10.5194/acp-16-6931-2016, 2016
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The global atmospheric budget and distribution of monocyclic aromatic compounds is estimated, using an atmospheric chemistry general circulation model. Simulation results are evaluated with observations with the goal of understanding emission, production and removal of these compounds. Anthropogenic and biomass burning are the main sources of aromatic compounds to the atmosphere. The main sink is photochemical decomposition and in lesser importance dry deposition.
Victor Stepanenko, Ivan Mammarella, Anne Ojala, Heli Miettinen, Vasily Lykosov, and Timo Vesala
Geosci. Model Dev., 9, 1977–2006, https://doi.org/10.5194/gmd-9-1977-2016, https://doi.org/10.5194/gmd-9-1977-2016, 2016
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A 1-D lake model is presented, reproducing temperature, oxygen, carbon dioxide and methane. All prognostic variables are treated in unified manner via generic 1-D transport equation. The model is validated vs. comprehensive observational data set gathered at Kuivajärvi Lake (Finland). Our results suggest that a gas transfer through thermocline under intense seiche motions is a bottleneck in quantifying greenhouse gas dynamics in dimictic lakes, calling for further research.
Patrick Jöckel, Holger Tost, Andrea Pozzer, Markus Kunze, Oliver Kirner, Carl A. M. Brenninkmeijer, Sabine Brinkop, Duy S. Cai, Christoph Dyroff, Johannes Eckstein, Franziska Frank, Hella Garny, Klaus-Dirk Gottschaldt, Phoebe Graf, Volker Grewe, Astrid Kerkweg, Bastian Kern, Sigrun Matthes, Mariano Mertens, Stefanie Meul, Marco Neumaier, Matthias Nützel, Sophie Oberländer-Hayn, Roland Ruhnke, Theresa Runde, Rolf Sander, Dieter Scharffe, and Andreas Zahn
Geosci. Model Dev., 9, 1153–1200, https://doi.org/10.5194/gmd-9-1153-2016, https://doi.org/10.5194/gmd-9-1153-2016, 2016
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With an advanced numerical global chemistry climate model (CCM) we performed several detailed
combined hind-cast and projection simulations of the period 1950 to 2100 to assess the
past, present, and potential future dynamical and chemical state of the Earth atmosphere.
The manuscript documents the model and the various applied model set-ups and provides
a first evaluation of the simulation results from a global perspective as a quality check of the data.
Üllar Rannik, Luxi Zhou, Putian Zhou, Rosa Gierens, Ivan Mammarella, Andrey Sogachev, and Michael Boy
Atmos. Chem. Phys., 16, 3145–3160, https://doi.org/10.5194/acp-16-3145-2016, https://doi.org/10.5194/acp-16-3145-2016, 2016
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Atmospheric boundary layer (ABL) model coupled with detailed atmospheric chemistry and aerosol dynamical model was used to quantify the role of aerosol and ABL dynamics in the vertical transport of aerosols at a pine forest site in southern Finland. Simulations showed that under dynamical conditions the particle fluxes above canopy can significantly deviate from the dry deposition into the canopy. The deviation can be systematic for certain particle sizes over a period of several days.
Saara E. Lind, Narasinha J. Shurpali, Olli Peltola, Ivan Mammarella, Niina Hyvönen, Marja Maljanen, Mari Räty, Perttu Virkajärvi, and Pertti J. Martikainen
Biogeosciences, 13, 1255–1268, https://doi.org/10.5194/bg-13-1255-2016, https://doi.org/10.5194/bg-13-1255-2016, 2016
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We showed that the reed canary grass (RCG) was environmentally friendly from the CO2 balance point of view when cultivated on this mineral soil. When compared to the earlier findings on the same crop on organic soil site, the capacity of the crop to withdraw atmospheric CO2 was even stronger on the present mineral soil site than that on the organic soil site. For full estimation of the climatic impacts of this bioenergy system, a life cycle assessment will be needed.
A. Collalti, S. Marconi, A. Ibrom, C. Trotta, A. Anav, E. D'Andrea, G. Matteucci, L. Montagnani, B. Gielen, I. Mammarella, T. Grünwald, A. Knohl, F. Berninger, Y. Zhao, R. Valentini, and M. Santini
Geosci. Model Dev., 9, 479–504, https://doi.org/10.5194/gmd-9-479-2016, https://doi.org/10.5194/gmd-9-479-2016, 2016
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This study evaluates the performances of the new version (v.5.1) of 3D-CMCC Forest Ecosystem Model in simulating gross primary productivity (GPP), against eddy covariance GPP data for 10 FLUXNET forest sites across Europe. The model consistently reproduces both in timing and in magnitude daily and monthly GPP variability across all sites, with the exception of the two Mediterranean sites. Inclusion of forest structure within simulation ameliorate in some cases the model output.
A. J. G. Baumgaertner, P. Jöckel, A. Kerkweg, R. Sander, and H. Tost
Geosci. Model Dev., 9, 125–135, https://doi.org/10.5194/gmd-9-125-2016, https://doi.org/10.5194/gmd-9-125-2016, 2016
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The Community Earth System Model (CESM1) is connected to the the Modular Earth Submodel System (MESSy) as a new base model. This allows MESSy users the option to utilize either the state-of-the art spectral element atmosphere dynamical core or the finite volume core of CESM1. Additionally, this makes several other component models available to MESSy users.
Y. Gao, T. Markkanen, T. Thum, M. Aurela, A. Lohila, I. Mammarella, M. Kämäräinen, S. Hagemann, and T. Aalto
Hydrol. Earth Syst. Sci., 20, 175–191, https://doi.org/10.5194/hess-20-175-2016, https://doi.org/10.5194/hess-20-175-2016, 2016
Christiane Hofmann, Astrid Kerkweg, Peter Hoor, and Patrick Jöckel
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2015-949, https://doi.org/10.5194/acp-2015-949, 2016
Revised manuscript not accepted
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Ozone enhancements at the surface, caused by descending stratospheric air masses along deep tropopause folds, can be reproduced using the model system MECO(n). It is shown that stratosphere-troposphere-exchange (STE) in the vicinity of a tropopause fold occurs in regions of turbulence and diabatic processes. The efficiency of mixing is quantified, showing that almost all of the air masses originating in the tropopause fold are transported into the troposphere during the following two days.
A. Kerkweg and P. Jöckel
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmdd-8-8607-2015, https://doi.org/10.5194/gmdd-8-8607-2015, 2015
Revised manuscript not accepted
F. Minunno, M. Peltoniemi, S. Launiainen, M. Aurela, A. Lindroth, A. Lohila, I. Mammarella, K. Minkkinen, and A. Mäkelä
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmdd-8-5089-2015, https://doi.org/10.5194/gmdd-8-5089-2015, 2015
Revised manuscript not accepted
H. Fischer, A. Pozzer, T. Schmitt, P. Jöckel, T. Klippel, D. Taraborrelli, and J. Lelieveld
Atmos. Chem. Phys., 15, 6971–6980, https://doi.org/10.5194/acp-15-6971-2015, https://doi.org/10.5194/acp-15-6971-2015, 2015
Ü. Rannik, S. Haapanala, N. J. Shurpali, I. Mammarella, S. Lind, N. Hyvönen, O. Peltola, M. Zahniser, P. J. Martikainen, and T. Vesala
Biogeosciences, 12, 415–432, https://doi.org/10.5194/bg-12-415-2015, https://doi.org/10.5194/bg-12-415-2015, 2015
C. Wu, I. Pullinen, S. Andres, G. Carriero, S. Fares, H. Goldbach, L. Hacker, T. Kasal, A. Kiendler-Scharr, E. Kleist, E. Paoletti, A. Wahner, J. Wildt, and Th. F. Mentel
Biogeosciences, 12, 177–191, https://doi.org/10.5194/bg-12-177-2015, https://doi.org/10.5194/bg-12-177-2015, 2015
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Impacts of soil moisture on de novo monoterpene emissions from several tree species were studied. Mild drought slightly increased MT emissions, but with further progressing drought the emissions decreased to almost zero. Increases of MT emissions were explainable by increases of leaf temperature due to lowered transpirational cooling. The decrease of emissions observed when soil moisture fell below certain thresholds was parameterized, allowing considering impacts of soil moisture in models.
K. Hens, A. Novelli, M. Martinez, J. Auld, R. Axinte, B. Bohn, H. Fischer, P. Keronen, D. Kubistin, A. C. Nölscher, R. Oswald, P. Paasonen, T. Petäjä, E. Regelin, R. Sander, V. Sinha, M. Sipilä, D. Taraborrelli, C. Tatum Ernest, J. Williams, J. Lelieveld, and H. Harder
Atmos. Chem. Phys., 14, 8723–8747, https://doi.org/10.5194/acp-14-8723-2014, https://doi.org/10.5194/acp-14-8723-2014, 2014
O. Peltola, A. Hensen, C. Helfter, L. Belelli Marchesini, F. C. Bosveld, W. C. M. van den Bulk, J. A. Elbers, S. Haapanala, J. Holst, T. Laurila, A. Lindroth, E. Nemitz, T. Röckmann, A. T. Vermeulen, and I. Mammarella
Biogeosciences, 11, 3163–3186, https://doi.org/10.5194/bg-11-3163-2014, https://doi.org/10.5194/bg-11-3163-2014, 2014
D. R. Gentner, E. Ormeño, S. Fares, T. B. Ford, R. Weber, J.-H. Park, J. Brioude, W. M. Angevine, J. F. Karlik, and A. H. Goldstein
Atmos. Chem. Phys., 14, 5393–5413, https://doi.org/10.5194/acp-14-5393-2014, https://doi.org/10.5194/acp-14-5393-2014, 2014
M. S. Long, W. C. Keene, R. C. Easter, R. Sander, X. Liu, A. Kerkweg, and D. Erickson
Atmos. Chem. Phys., 14, 3397–3425, https://doi.org/10.5194/acp-14-3397-2014, https://doi.org/10.5194/acp-14-3397-2014, 2014
J.-H. Park, S. Fares, R. Weber, and A. H. Goldstein
Atmos. Chem. Phys., 14, 231–244, https://doi.org/10.5194/acp-14-231-2014, https://doi.org/10.5194/acp-14-231-2014, 2014
O. Peltola, I. Mammarella, S. Haapanala, G. Burba, and T. Vesala
Biogeosciences, 10, 3749–3765, https://doi.org/10.5194/bg-10-3749-2013, https://doi.org/10.5194/bg-10-3749-2013, 2013
J.-H. Park, A. H. Goldstein, J. Timkovsky, S. Fares, R. Weber, J. Karlik, and R. Holzinger
Atmos. Chem. Phys., 13, 1439–1456, https://doi.org/10.5194/acp-13-1439-2013, https://doi.org/10.5194/acp-13-1439-2013, 2013
Related subject area
Atmospheric sciences
New explicit formulae for the settling speed of prolate spheroids in the atmosphere: theoretical background and implementation in AerSett v2.0.2
The Year of Polar Prediction site Model Intercomparison Project (YOPPsiteMIP) phase 1: project overview and Arctic winter forecast evaluation
Evaluating CHASER V4.0 global formaldehyde (HCHO) simulations using satellite, aircraft, and ground-based remote-sensing observations
Global variable-resolution simulations of extreme precipitation over Henan, China, in 2021 with MPAS-Atmosphere v7.3
The CHIMERE chemistry-transport model v2023r1
tobac v1.5: introducing fast 3D tracking, splits and mergers, and other enhancements for identifying and analysing meteorological phenomena
Merged Observatory Data Files (MODFs): an integrated observational data product supporting process-oriented investigations and diagnostics
Simulation of marine stratocumulus using the super-droplet method: numerical convergence and comparison to a double-moment bulk scheme using SCALE-SDM 5.2.6-2.3.1
WRF-Comfort: simulating microscale variability in outdoor heat stress at the city scale with a mesoscale model
Representing effects of surface heterogeneity in a multi-plume eddy diffusivity mass flux boundary layer parameterization
Can TROPOMI NO2 satellite data be used to track the drop in and resurgence of NOx emissions in Germany between 2019–2021 using the multi-source plume method (MSPM)?
A spatiotemporally separated framework for reconstructing the sources of atmospheric radionuclide releases
A parameterization scheme for the floating wind farm in a coupled atmosphere–wave model (COAWST v3.7)
RoadSurf 1.1: open-source road weather model library
Calibrating and validating the Integrated Valuation of Ecosystem Services and Tradeoffs (InVEST) urban cooling model: case studies in France and the United States
The ddeq Python library for point source quantification from remote sensing images (version 1.0)
Incorporating Oxygen Isotopes of Oxidized Reactive Nitrogen in the Regional Atmospheric Chemistry Mechanism, version 2 (ICOIN-RACM2)
A general comprehensive evaluation method for cross-scale precipitation forecasts
Implementation of a Simple Actuator Disk for Large-Eddy Simulation in the Weather Research and Forecasting Model (WRF-SADLES v1.2) for wind turbine wake simulation
WRF-PDAF v1.0: implementation and application of an online localized ensemble data assimilation framework
Implementation and evaluation of diabatic advection in the Lagrangian transport model MPTRAC 2.6
An improved and extended parameterization of the CO2 15 µm cooling in the middle and upper atmosphere (CO2_cool_fort-1.0)
Development of a multiphase chemical mechanism to improve secondary organic aerosol formation in CAABA/MECCA (version 4.7.0)
Application of regional meteorology and air quality models based on the microprocessor without interlocked piped stages (MIPS) and LoongArch CPU platforms
Investigating ground-level ozone pollution in semi-arid and arid regions of Arizona using WRF-Chem v4.4 modeling
An objective identification technique for potential vorticity structures associated with African easterly waves
Importance of microphysical settings for climate forcing by stratospheric SO2 injections as modeled by SOCOL-AERv2
Assessment of surface ozone products from downscaled CAMS reanalysis and CAMS daily forecast using urban air quality monitoring stations in Iran
Open boundary conditions for atmospheric large-eddy simulations and their implementation in DALES4.4
Efficient and stable coupling of the SuperdropNet deep-learning-based cloud microphysics (v0.1.0) with the ICON climate and weather model (v2.6.5)
Three-dimensional variational assimilation with a multivariate background error covariance for the Model for Prediction Across Scales – Atmosphere with the Joint Effort for Data assimilation Integration (JEDI-MPAS 2.0.0-beta)
FUME 2.0 – Flexible Universal processor for Modeling Emissions
DEUCE v1.0: a neural network for probabilistic precipitation nowcasting with aleatoric and epistemic uncertainties
Evaluation of multi-season convection-permitting atmosphere – mixed-layer ocean simulations of the Maritime Continent
Investigating the impact of coupling HARMONIE-WINS50 (cy43) meteorology to LOTOS-EUROS (v2.2.002) on a simulation of NO2 concentrations over the Netherlands
Balloon drift estimation and improved position estimates for radiosondes
Emission ensemble approach to improve the development of multi-scale emission inventories
What is the relative impact of nudging and online coupling on meteorological variables, pollutant concentrations and aerosol optical properties?
Diagnosing drivers of PM2.5 simulation biases in China from meteorology, chemical composition, and emission sources using an efficient machine learning method
Validation and analysis of the Polair3D v1.11 chemical transport model over Quebec
Assimilation of GNSS tropospheric gradients into the Weather Research and Forecasting (WRF) model version 4.4.1
Identifying atmospheric rivers and their poleward latent heat transport with generalizable neural networks: ARCNNv1
Assessing acetone for the GISS ModelE2.1 Earth system model
Bergen metrics: composite error metrics for assessing performance of climate models using EURO-CORDEX simulations
A dynamic approach to three-dimensional radiative transfer in subkilometer-scale numerical weather prediction models: the dynamic TenStream solver v1.0
Evaluation and development of surface layer scheme representation of temperature inversions over boreal forests in Arctic wintertime conditions
Modelling wind farm effects in HARMONIE–AROME (cycle 43.2.2) – Part 1: Implementation and evaluation
Analytical and adaptable initial conditions for dry and moist baroclinic waves in the global hydrostatic model OpenIFS (CY43R3)
Challenges of constructing and selecting the “perfect” boundary conditions for the large-eddy simulation model PALM
Mixed-Precision Computing in the GRIST Dynamical Core for Weather and Climate Modelling
Sylvain Mailler, Sotirios Mallios, Arineh Cholakian, Vassilis Amiridis, Laurent Menut, and Romain Pennel
Geosci. Model Dev., 17, 5641–5655, https://doi.org/10.5194/gmd-17-5641-2024, https://doi.org/10.5194/gmd-17-5641-2024, 2024
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We propose two explicit expressions to calculate the settling speed of solid atmospheric particles with prolate spheroidal shapes. The first formulation is based on theoretical arguments only, while the second one is based on computational fluid dynamics calculations. We show that the first method is suitable for virtually all atmospheric aerosols, provided their shape can be adequately described as a prolate spheroid, and we provide an implementation of the first method in AerSett v2.0.2.
Jonathan J. Day, Gunilla Svensson, Barbara Casati, Taneil Uttal, Siri-Jodha Khalsa, Eric Bazile, Elena Akish, Niramson Azouz, Lara Ferrighi, Helmut Frank, Michael Gallagher, Øystein Godøy, Leslie M. Hartten, Laura X. Huang, Jareth Holt, Massimo Di Stefano, Irene Suomi, Zen Mariani, Sara Morris, Ewan O'Connor, Roberta Pirazzini, Teresa Remes, Rostislav Fadeev, Amy Solomon, Johanna Tjernström, and Mikhail Tolstykh
Geosci. Model Dev., 17, 5511–5543, https://doi.org/10.5194/gmd-17-5511-2024, https://doi.org/10.5194/gmd-17-5511-2024, 2024
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The YOPP site Model Intercomparison Project (YOPPsiteMIP), which was designed to facilitate enhanced weather forecast evaluation in polar regions, is discussed here, focussing on describing the archive of forecast data and presenting a multi-model evaluation at Arctic supersites during February and March 2018. The study highlights an underestimation in boundary layer temperature variance that is common across models and a related inability to forecast cold extremes at several of the sites.
Hossain Mohammed Syedul Hoque, Kengo Sudo, Hitoshi Irie, Yanfeng He, and Md Firoz Khan
Geosci. Model Dev., 17, 5545–5571, https://doi.org/10.5194/gmd-17-5545-2024, https://doi.org/10.5194/gmd-17-5545-2024, 2024
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Using multi-platform observations, we validated global formaldehyde (HCHO) simulations from a chemistry transport model. HCHO is a crucial intermediate in the chemical catalytic cycle that governs the ozone formation in the troposphere. The model was capable of replicating the observed spatiotemporal variability in HCHO. In a few cases, the model's capability was limited. This is attributed to the uncertainties in the observations and the model parameters.
Zijun Liu, Li Dong, Zongxu Qiu, Xingrong Li, Huiling Yuan, Dongmei Meng, Xiaobin Qiu, Dingyuan Liang, and Yafei Wang
Geosci. Model Dev., 17, 5477–5496, https://doi.org/10.5194/gmd-17-5477-2024, https://doi.org/10.5194/gmd-17-5477-2024, 2024
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In this study, we completed a series of simulations with MPAS-Atmosphere (version 7.3) to study the extreme precipitation event of Henan, China, during 20–22 July 2021. We found the different performance of two built-in parameterization scheme suites (mesoscale and convection-permitting suites) with global quasi-uniform and variable-resolution meshes. This study holds significant implications for advancing the understanding of the scale-aware capability of MPAS-Atmosphere.
Laurent Menut, Arineh Cholakian, Romain Pennel, Guillaume Siour, Sylvain Mailler, Myrto Valari, Lya Lugon, and Yann Meurdesoif
Geosci. Model Dev., 17, 5431–5457, https://doi.org/10.5194/gmd-17-5431-2024, https://doi.org/10.5194/gmd-17-5431-2024, 2024
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A new version of the CHIMERE model is presented. This version contains both computational and physico-chemical changes. The computational changes make it easy to choose the variables to be extracted as a result, including values of maximum sub-hourly concentrations. Performance tests show that the model is 1.5 to 2 times faster than the previous version for the same setup. Processes such as turbulence, transport schemes and dry deposition have been modified and updated.
G. Alexander Sokolowsky, Sean W. Freeman, William K. Jones, Julia Kukulies, Fabian Senf, Peter J. Marinescu, Max Heikenfeld, Kelcy N. Brunner, Eric C. Bruning, Scott M. Collis, Robert C. Jackson, Gabrielle R. Leung, Nils Pfeifer, Bhupendra A. Raut, Stephen M. Saleeby, Philip Stier, and Susan C. van den Heever
Geosci. Model Dev., 17, 5309–5330, https://doi.org/10.5194/gmd-17-5309-2024, https://doi.org/10.5194/gmd-17-5309-2024, 2024
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Building on previous analysis tools developed for atmospheric science, the original release of the Tracking and Object-Based Analysis (tobac) Python package, v1.2, was open-source, modular, and insensitive to the type of gridded input data. Here, we present the latest version of tobac, v1.5, which substantially improves scientific capabilities and computational efficiency from the previous version. These enhancements permit new uses for tobac in atmospheric science and potentially other fields.
Taneil Uttal, Leslie M. Hartten, Siri Jodha Khalsa, Barbara Casati, Gunilla Svensson, Jonathan Day, Jareth Holt, Elena Akish, Sara Morris, Ewan O'Connor, Roberta Pirazzini, Laura X. Huang, Robert Crawford, Zen Mariani, Øystein Godøy, Johanna A. K. Tjernström, Giri Prakash, Nicki Hickmon, Marion Maturilli, and Christopher J. Cox
Geosci. Model Dev., 17, 5225–5247, https://doi.org/10.5194/gmd-17-5225-2024, https://doi.org/10.5194/gmd-17-5225-2024, 2024
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A Merged Observatory Data File (MODF) format to systematically collate complex atmosphere, ocean, and terrestrial data sets collected by multiple instruments during field campaigns is presented. The MODF format is also designed to be applied to model output data, yielding format-matching Merged Model Data Files (MMDFs). MODFs plus MMDFs will augment and accelerate the synergistic use of model results with observational data to increase understanding and predictive skill.
Chongzhi Yin, Shin-ichiro Shima, Lulin Xue, and Chunsong Lu
Geosci. Model Dev., 17, 5167–5189, https://doi.org/10.5194/gmd-17-5167-2024, https://doi.org/10.5194/gmd-17-5167-2024, 2024
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We investigate numerical convergence properties of a particle-based numerical cloud microphysics model (SDM) and a double-moment bulk scheme for simulating a marine stratocumulus case, compare their results with model intercomparison project results, and present possible explanations for the different results of the SDM and the bulk scheme. Aerosol processes can be accurately simulated using SDM, and this may be an important factor affecting the behavior and morphology of marine stratocumulus.
Alberto Martilli, Negin Nazarian, E. Scott Krayenhoff, Jacob Lachapelle, Jiachen Lu, Esther Rivas, Alejandro Rodriguez-Sanchez, Beatriz Sanchez, and José Luis Santiago
Geosci. Model Dev., 17, 5023–5039, https://doi.org/10.5194/gmd-17-5023-2024, https://doi.org/10.5194/gmd-17-5023-2024, 2024
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Here, we present a model that quantifies the thermal stress and its microscale variability at a city scale with a mesoscale model. This tool can have multiple applications, from early warnings of extreme heat to the vulnerable population to the evaluation of the effectiveness of heat mitigation strategies. It is the first model that includes information on microscale variability in a mesoscale model, something that is essential for fully evaluating heat stress.
Nathan P. Arnold
Geosci. Model Dev., 17, 5041–5056, https://doi.org/10.5194/gmd-17-5041-2024, https://doi.org/10.5194/gmd-17-5041-2024, 2024
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Earth system models often represent the land surface at smaller scales than the atmosphere, but surface–atmosphere coupling uses only aggregated surface properties. This study presents a method to allow heterogeneous surface properties to modify boundary layer updrafts. The method is tested in single column experiments. Updraft properties are found to reasonably covary with surface conditions, and simulated boundary layer variability is enhanced over more heterogeneous land surfaces.
Enrico Dammers, Janot Tokaya, Christian Mielke, Kevin Hausmann, Debora Griffin, Chris McLinden, Henk Eskes, and Renske Timmermans
Geosci. Model Dev., 17, 4983–5007, https://doi.org/10.5194/gmd-17-4983-2024, https://doi.org/10.5194/gmd-17-4983-2024, 2024
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Nitrogen dioxide (NOx) is produced by sources such as industry and traffic and is directly linked to negative impacts on health and the environment. The current construction of emission inventories to keep track of NOx emissions is slow and time-consuming. Satellite measurements provide a way to quickly and independently estimate emissions. In this study, we apply a consistent methodology to derive NOx emissions over Germany and illustrate the value of having such a method for fast projections.
Yuhan Xu, Sheng Fang, Xinwen Dong, and Shuhan Zhuang
Geosci. Model Dev., 17, 4961–4982, https://doi.org/10.5194/gmd-17-4961-2024, https://doi.org/10.5194/gmd-17-4961-2024, 2024
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Recent atmospheric radionuclide leakages from unknown sources have posed a new challenge in nuclear emergency assessment. Reconstruction via environmental observations is the only feasible way to identify sources, but simultaneous reconstruction of the source location and release rate yields high uncertainties. We propose a spatiotemporally separated reconstruction strategy that avoids these uncertainties and outperforms state-of-the-art methods with respect to accuracy and uncertainty ranges.
Shaokun Deng, Shengmu Yang, Shengli Chen, Daoyi Chen, Xuefeng Yang, and Shanshan Cui
Geosci. Model Dev., 17, 4891–4909, https://doi.org/10.5194/gmd-17-4891-2024, https://doi.org/10.5194/gmd-17-4891-2024, 2024
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Global offshore wind power development is moving from offshore to deeper waters, where floating offshore wind turbines have an advantage over bottom-fixed turbines. However, current wind farm parameterization schemes in mesoscale models are not applicable to floating turbines. We propose a floating wind farm parameterization scheme that accounts for the attenuation of the significant wave height by floating turbines. The results indicate that it has a significant effect on the power output.
Virve Eveliina Karsisto
Geosci. Model Dev., 17, 4837–4853, https://doi.org/10.5194/gmd-17-4837-2024, https://doi.org/10.5194/gmd-17-4837-2024, 2024
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RoadSurf is an open-source library that contains functions from the Finnish Meteorological Institute’s road weather model. The evaluation of the library shows that it is well suited for making road surface temperature forecasts. The evaluation was done by making forecasts for about 400 road weather stations in Finland with the library. Accurate forecasts help road authorities perform salting and plowing operations at the right time and keep roads safe for drivers.
Perrine Hamel, Martí Bosch, Léa Tardieu, Aude Lemonsu, Cécile de Munck, Chris Nootenboom, Vincent Viguié, Eric Lonsdorf, James A. Douglass, and Richard P. Sharp
Geosci. Model Dev., 17, 4755–4771, https://doi.org/10.5194/gmd-17-4755-2024, https://doi.org/10.5194/gmd-17-4755-2024, 2024
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The InVEST Urban Cooling model estimates the cooling effect of vegetation in cities. We further developed an algorithm to facilitate model calibration and evaluation. Applying the algorithm to case studies in France and in the United States, we found that nighttime air temperature estimates compare well with reference datasets. Estimated change in temperature from a land cover scenario compares well with an alternative model estimate, supporting the use of the model for urban planning decisions.
Gerrit Kuhlmann, Erik Koene, Sandro Meier, Diego Santaren, Grégoire Broquet, Frédéric Chevallier, Janne Hakkarainen, Janne Nurmela, Laia Amorós, Johanna Tamminen, and Dominik Brunner
Geosci. Model Dev., 17, 4773–4789, https://doi.org/10.5194/gmd-17-4773-2024, https://doi.org/10.5194/gmd-17-4773-2024, 2024
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We present a Python software library for data-driven emission quantification (ddeq). It can be used to determine the emissions of hot spots (cities, power plants and industry) from remote sensing images using different methods. ddeq can be extended for new datasets and methods, providing a powerful community tool for users and developers. The application of the methods is shown using Jupyter notebooks included in the library.
Wendell W. Walters, Masayuki Takeuchi, Nga L. Ng, and Meredith G. Hastings
Geosci. Model Dev., 17, 4673–4687, https://doi.org/10.5194/gmd-17-4673-2024, https://doi.org/10.5194/gmd-17-4673-2024, 2024
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The study introduces a novel chemical mechanism for explicitly tracking oxygen isotope transfer in oxidized reactive nitrogen and odd oxygen using the Regional Atmospheric Chemistry Mechanism, version 2. This model enhances our ability to simulate and compare oxygen isotope compositions of reactive nitrogen, revealing insights into oxidation chemistry. The approach shows promise for improving atmospheric chemistry models and tropospheric oxidation capacity predictions.
Bing Zhang, Mingjian Zeng, Anning Huang, Zhengkun Qin, Couhua Liu, Wenru Shi, Xin Li, Kefeng Zhu, Chunlei Gu, and Jialing Zhou
Geosci. Model Dev., 17, 4579–4601, https://doi.org/10.5194/gmd-17-4579-2024, https://doi.org/10.5194/gmd-17-4579-2024, 2024
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By directly analyzing the proximity of precipitation forecasts and observations, a precipitation accuracy score (PAS) method was constructed. This method does not utilize a traditional contingency-table-based classification verification; however, it can replace the threat score (TS), equitable threat score (ETS), and other skill score methods, and it can be used to calculate the accuracy of numerical models or quantitative precipitation forecasts.
Hai Bui, Mostafa Bakhoday-Paskyabi, and Mohammadreza Mohammadpour-Penchah
Geosci. Model Dev., 17, 4447–4465, https://doi.org/10.5194/gmd-17-4447-2024, https://doi.org/10.5194/gmd-17-4447-2024, 2024
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We developed a new wind turbine wake model, the Simple Actuator Disc for Large Eddy Simulation (SADLES), integrated with the widely used Weather Research and Forecasting (WRF) model. WRF-SADLES accurately simulates wind turbine wakes at resolutions of a few dozen meters, aligning well with idealized simulations and observational measurements. This makes WRF-SADLES a promising tool for wind energy research, offering a balance between accuracy, computational efficiency, and ease of implementation.
Changliang Shao and Lars Nerger
Geosci. Model Dev., 17, 4433–4445, https://doi.org/10.5194/gmd-17-4433-2024, https://doi.org/10.5194/gmd-17-4433-2024, 2024
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This paper introduces and evaluates WRF-PDAF, a fully online-coupled ensemble data assimilation (DA) system. A key advantage of the WRF-PDAF configuration is its ability to concurrently integrate all ensemble states, eliminating the need for time-consuming distribution and collection of ensembles during the coupling communication. The extra time required for DA amounts to only 20.6 % per cycle. Twin experiment results underscore the effectiveness of the WRF-PDAF system.
Jan Clemens, Lars Hoffmann, Bärbel Vogel, Sabine Grießbach, and Nicole Thomas
Geosci. Model Dev., 17, 4467–4493, https://doi.org/10.5194/gmd-17-4467-2024, https://doi.org/10.5194/gmd-17-4467-2024, 2024
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Lagrangian transport models simulate the transport of air masses in the atmosphere. For example, one model (CLaMS) is well suited to calculating transport as it uses a special coordinate system and special vertical wind. However, it only runs inefficiently on modern supercomputers. Hence, we have implemented the benefits of CLaMS into a new model (MPTRAC), which is already highly efficient on modern supercomputers. Finally, in extensive tests, we showed that CLaMS and MPTRAC agree very well.
Manuel López-Puertas, Federico Fabiano, Victor Fomichev, Bernd Funke, and Daniel R. Marsh
Geosci. Model Dev., 17, 4401–4432, https://doi.org/10.5194/gmd-17-4401-2024, https://doi.org/10.5194/gmd-17-4401-2024, 2024
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The radiative infrared cooling of CO2 in the middle atmosphere is crucial for computing its thermal structure. It requires one however to include non-local thermodynamic equilibrium processes which are computationally very expensive, which cannot be afforded by climate models. In this work, we present an updated, efficient, accurate and very fast (~50 µs) parameterization of that cooling able to cope with CO2 abundances from half the pre-industrial values to 10 times the current abundance.
Felix Wieser, Rolf Sander, Changmin Cho, Hendrik Fuchs, Thorsten Hohaus, Anna Novelli, Ralf Tillmann, and Domenico Taraborrelli
Geosci. Model Dev., 17, 4311–4330, https://doi.org/10.5194/gmd-17-4311-2024, https://doi.org/10.5194/gmd-17-4311-2024, 2024
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The chemistry scheme of the atmospheric box model CAABA/MECCA is expanded to achieve an improved aerosol formation from emitted organic compounds. In addition to newly added reactions, temperature-dependent partitioning of all new species between the gas and aqueous phases is estimated and included in the pre-existing scheme. Sensitivity runs show an overestimation of key compounds from isoprene, which can be explained by a lack of aqueous-phase degradation reactions and box model limitations.
Zehua Bai, Qizhong Wu, Kai Cao, Yiming Sun, and Huaqiong Cheng
Geosci. Model Dev., 17, 4383–4399, https://doi.org/10.5194/gmd-17-4383-2024, https://doi.org/10.5194/gmd-17-4383-2024, 2024
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There is relatively limited research on the application of scientific computing on RISC CPU platforms. The MIPS architecture CPUs, a type of RISC CPUs, have distinct advantages in energy efficiency and scalability. The air quality modeling system can run stably on the MIPS and LoongArch platforms, and the experiment results verify the stability of scientific computing on the platforms. The work provides a technical foundation for the scientific application based on MIPS and LoongArch.
Yafang Guo, Chayan Roychoudhury, Mohammad Amin Mirrezaei, Rajesh Kumar, Armin Sorooshian, and Avelino F. Arellano
Geosci. Model Dev., 17, 4331–4353, https://doi.org/10.5194/gmd-17-4331-2024, https://doi.org/10.5194/gmd-17-4331-2024, 2024
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This research focuses on surface ozone (O3) pollution in Arizona, a historically air-quality-challenged arid and semi-arid region in the US. The unique characteristics of this kind of region, e.g., intense heat, minimal moisture, and persistent desert shrubs, play a vital role in comprehending O3 exceedances. Using the WRF-Chem model, we analyzed O3 levels in the pre-monsoon month, revealing the model's skill in capturing diurnal and MDA8 O3 levels.
Christoph Fischer, Andreas H. Fink, Elmar Schömer, Marc Rautenhaus, and Michael Riemer
Geosci. Model Dev., 17, 4213–4228, https://doi.org/10.5194/gmd-17-4213-2024, https://doi.org/10.5194/gmd-17-4213-2024, 2024
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This study presents a method for identifying and tracking 3-D potential vorticity structures within African easterly waves (AEWs). Each identified structure is characterized by descriptors, including its 3-D position and orientation, which have been validated through composite comparisons. A trough-centric perspective on the descriptors reveals the evolution and distinct characteristics of AEWs. These descriptors serve as valuable statistical inputs for the study of AEW-related phenomena.
Sandro Vattioni, Andrea Stenke, Beiping Luo, Gabriel Chiodo, Timofei Sukhodolov, Elia Wunderlin, and Thomas Peter
Geosci. Model Dev., 17, 4181–4197, https://doi.org/10.5194/gmd-17-4181-2024, https://doi.org/10.5194/gmd-17-4181-2024, 2024
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We investigate the sensitivity of aerosol size distributions in the presence of strong SO2 injections for climate interventions or after volcanic eruptions to the call sequence and frequency of the routines for nucleation and condensation in sectional aerosol models with operator splitting. Using the aerosol–chemistry–climate model SOCOL-AERv2, we show that the radiative and chemical outputs are sensitive to these settings at high H2SO4 supersaturations and how to obtain reliable results.
Najmeh Kaffashzadeh and Abbas-Ali Aliakbari Bidokhti
Geosci. Model Dev., 17, 4155–4179, https://doi.org/10.5194/gmd-17-4155-2024, https://doi.org/10.5194/gmd-17-4155-2024, 2024
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This paper assesses the capability of two state-of-the-art global datasets in simulating surface ozone over Iran using a new methodology. It is found that the global model data need to be downscaled for regulatory purposes or policy applications at local scales. The method can be useful not only for the evaluation but also for the prediction of other chemical species, such as aerosols.
Franciscus Liqui Lung, Christian Jakob, A. Pier Siebesma, and Fredrik Jansson
Geosci. Model Dev., 17, 4053–4076, https://doi.org/10.5194/gmd-17-4053-2024, https://doi.org/10.5194/gmd-17-4053-2024, 2024
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Traditionally, high-resolution atmospheric models employ periodic boundary conditions, which limit simulations to domains without horizontal variations. In this research open boundary conditions are developed to replace the periodic boundary conditions. The implementation is tested in a controlled setup, and the results show minimal disturbances. Using these boundary conditions, high-resolution models can be forced by a coarser model to study atmospheric phenomena in realistic background states.
Caroline Arnold, Shivani Sharma, Tobias Weigel, and David S. Greenberg
Geosci. Model Dev., 17, 4017–4029, https://doi.org/10.5194/gmd-17-4017-2024, https://doi.org/10.5194/gmd-17-4017-2024, 2024
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In atmospheric models, rain formation is simplified to be computationally efficient. We trained a machine learning model, SuperdropNet, to emulate warm-rain formation based on super-droplet simulations. Here, we couple SuperdropNet with an atmospheric model in a warm-bubble experiment and find that the coupled simulation runs stable and produces reasonable results, making SuperdropNet a viable ML proxy for droplet simulations. We also present a comprehensive benchmark for coupling architectures.
Byoung-Joo Jung, Benjamin Ménétrier, Chris Snyder, Zhiquan Liu, Jonathan J. Guerrette, Junmei Ban, Ivette Hernández Baños, Yonggang G. Yu, and William C. Skamarock
Geosci. Model Dev., 17, 3879–3895, https://doi.org/10.5194/gmd-17-3879-2024, https://doi.org/10.5194/gmd-17-3879-2024, 2024
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We describe the multivariate static background error covariance (B) for the JEDI-MPAS 3D-Var data assimilation system. With tuned B parameters, the multivariate B gives physically balanced analysis increment fields in the single-observation test framework. In the month-long cycling experiment with a global 60 km mesh, 3D-Var with static B performs stably. Due to its simple workflow and minimal computational requirements, JEDI-MPAS 3D-Var can be useful for the research community.
Michal Belda, Nina Benešová, Jaroslav Resler, Peter Huszár, Ondřej Vlček, Pavel Krč, Jan Karlický, Pavel Juruš, and Kryštof Eben
Geosci. Model Dev., 17, 3867–3878, https://doi.org/10.5194/gmd-17-3867-2024, https://doi.org/10.5194/gmd-17-3867-2024, 2024
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For modeling atmospheric chemistry, it is necessary to provide data on emissions of pollutants. These can come from various sources and in various forms, and preprocessing of the data to be ingestible by chemistry models can be quite challenging. We developed the FUME processor to use a database layer that internally transforms all input data into a rigid structure, facilitating further processing to allow for emission processing from the continental to the street scale.
Bent Harnist, Seppo Pulkkinen, and Terhi Mäkinen
Geosci. Model Dev., 17, 3839–3866, https://doi.org/10.5194/gmd-17-3839-2024, https://doi.org/10.5194/gmd-17-3839-2024, 2024
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Probabilistic precipitation nowcasting (local forecasting for 0–6 h) is crucial for reducing damage from events like flash floods. For this goal, we propose the DEUCE neural-network-based model which uses data and model uncertainties to generate an ensemble of potential precipitation development scenarios for the next hour. Trained and evaluated with Finnish precipitation composites, DEUCE was found to produce more skillful and reliable nowcasts than established models.
Emma Howard, Steven Woolnough, Nicholas Klingaman, Daniel Shipley, Claudio Sanchez, Simon C. Peatman, Cathryn E. Birch, and Adrian J. Matthews
Geosci. Model Dev., 17, 3815–3837, https://doi.org/10.5194/gmd-17-3815-2024, https://doi.org/10.5194/gmd-17-3815-2024, 2024
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This paper describes a coupled atmosphere–mixed-layer ocean simulation setup that will be used to study weather processes in Southeast Asia. The set-up has been used to compare high-resolution simulations, which are able to partially resolve storms, to coarser simulations, which cannot. We compare the model performance at representing variability of rainfall and sea surface temperatures across length scales between the coarse and fine models.
Andrés Yarce Botero, Michiel van Weele, Arjo Segers, Pier Siebesma, and Henk Eskes
Geosci. Model Dev., 17, 3765–3781, https://doi.org/10.5194/gmd-17-3765-2024, https://doi.org/10.5194/gmd-17-3765-2024, 2024
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HARMONIE WINS50 reanalysis data with 0.025° × 0.025° resolution from 2019 to 2021 were coupled with the LOTOS-EUROS Chemical Transport Model. HARMONIE and ECMWF meteorology configurations against Cabauw observations (52.0° N, 4.9° W) were evaluated as simulated NO2 concentrations with ground-level sensors. Differences in crucial meteorological input parameters (boundary layer height, vertical diffusion coefficient) between the hydrostatic and non-hydrostatic models were analysed.
Ulrich Voggenberger, Leopold Haimberger, Federico Ambrogi, and Paul Poli
Geosci. Model Dev., 17, 3783–3799, https://doi.org/10.5194/gmd-17-3783-2024, https://doi.org/10.5194/gmd-17-3783-2024, 2024
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This paper presents a method for calculating balloon drift from historical radiosonde ascent data. The drift can reach distances of several hundred kilometres and is often neglected. Verification shows the beneficial impact of the more accurate balloon position on model assimilation. The method is not limited to radiosondes but would also work for dropsondes, ozonesondes, or any other in situ sonde carried by the wind in the pre-GNSS era, provided the necessary information is available.
Philippe Thunis, Jeroen Kuenen, Enrico Pisoni, Bertrand Bessagnet, Manjola Banja, Lech Gawuc, Karol Szymankiewicz, Diego Guizardi, Monica Crippa, Susana Lopez-Aparicio, Marc Guevara, Alexander De Meij, Sabine Schindlbacher, and Alain Clappier
Geosci. Model Dev., 17, 3631–3643, https://doi.org/10.5194/gmd-17-3631-2024, https://doi.org/10.5194/gmd-17-3631-2024, 2024
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An ensemble emission inventory is created with the aim of monitoring the status and progress made with the development of EU-wide inventories. This emission ensemble serves as a common benchmark for the screening and allows for the comparison of more than two inventories at a time. Because the emission “truth” is unknown, the approach does not tell which inventory is the closest to reality, but it identifies inconsistencies that require special attention.
Laurent Menut, Bertrand Bessagnet, Arineh Cholakian, Guillaume Siour, Sylvain Mailler, and Romain Pennel
Geosci. Model Dev., 17, 3645–3665, https://doi.org/10.5194/gmd-17-3645-2024, https://doi.org/10.5194/gmd-17-3645-2024, 2024
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This study is about the modelling of the atmospheric composition in Europe during the summer of 2022, when massive wildfires were observed. It is a sensitivity study dedicated to the relative impacts of two modelling processes that are able to modify the meteorology used for the calculation of the atmospheric chemistry and transport of pollutants.
Shuai Wang, Mengyuan Zhang, Yueqi Gao, Peng Wang, Qingyan Fu, and Hongliang Zhang
Geosci. Model Dev., 17, 3617–3629, https://doi.org/10.5194/gmd-17-3617-2024, https://doi.org/10.5194/gmd-17-3617-2024, 2024
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Numerical models are widely used in air pollution modeling but suffer from significant biases. The machine learning model designed in this study shows high efficiency in identifying such biases. Meteorology (relative humidity and cloud cover), chemical composition (secondary organic components and dust aerosols), and emission sources (residential activities) are diagnosed as the main drivers of bias in modeling PM2.5, a typical air pollutant. The results will help to improve numerical models.
Shoma Yamanouchi, Shayamilla Mahagammulla Gamage, Sara Torbatian, Jad Zalzal, Laura Minet, Audrey Smargiassi, Ying Liu, Ling Liu, Forood Azargoshasbi, Jinwoong Kim, Youngseob Kim, Daniel Yazgi, and Marianne Hatzopoulou
Geosci. Model Dev., 17, 3579–3597, https://doi.org/10.5194/gmd-17-3579-2024, https://doi.org/10.5194/gmd-17-3579-2024, 2024
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Air pollution is a major health hazard, and chemical transport models (CTMs) are valuable tools that aid in our understanding of the risks of air pollution at both local and regional scales. In this study, the Polair3D CTM of the Polyphemus air quality modeling platform was set up over Quebec, Canada, to assess the model’s capability in predicting key air pollutant species over the region, at seasonal temporal scales and at regional spatial scales.
Rohith Thundathil, Florian Zus, Galina Dick, and Jens Wickert
Geosci. Model Dev., 17, 3599–3616, https://doi.org/10.5194/gmd-17-3599-2024, https://doi.org/10.5194/gmd-17-3599-2024, 2024
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Global Navigation Satellite Systems (GNSS) provides moisture observations through its densely distributed ground station network. In this research, we assimilate a new type of observation called tropospheric gradient observations, which has never been incorporated into a weather model. We develop a forward operator for gradient-based observations and conduct an assimilation impact study. The study shows significant improvements in the model's humidity fields.
Ankur Mahesh, Travis A. O'Brien, Burlen Loring, Abdelrahman Elbashandy, William Boos, and William D. Collins
Geosci. Model Dev., 17, 3533–3557, https://doi.org/10.5194/gmd-17-3533-2024, https://doi.org/10.5194/gmd-17-3533-2024, 2024
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Atmospheric rivers (ARs) are extreme weather events that can alleviate drought or cause billions of US dollars in flood damage. We train convolutional neural networks (CNNs) to detect ARs with an estimate of the uncertainty. We present a framework to generalize these CNNs to a variety of datasets of past, present, and future climate. Using a simplified simulation of the Earth's atmosphere, we validate the CNNs. We explore the role of ARs in maintaining energy balance in the Earth system.
Alexandra Rivera, Kostas Tsigaridis, Gregory Faluvegi, and Drew Shindell
Geosci. Model Dev., 17, 3487–3505, https://doi.org/10.5194/gmd-17-3487-2024, https://doi.org/10.5194/gmd-17-3487-2024, 2024
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This paper describes and evaluates an improvement to the representation of acetone in the GISS ModelE2.1 Earth system model. We simulate acetone's concentration and transport across the atmosphere as well as its dependence on chemistry, the ocean, and various global emissions. Comparisons of our model’s estimates to past modeling studies and field measurements have shown encouraging results. Ultimately, this paper contributes to a broader understanding of acetone's role in the atmosphere.
Alok K. Samantaray, Priscilla A. Mooney, and Carla A. Vivacqua
Geosci. Model Dev., 17, 3321–3339, https://doi.org/10.5194/gmd-17-3321-2024, https://doi.org/10.5194/gmd-17-3321-2024, 2024
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Any interpretation of climate model data requires a comprehensive evaluation of the model performance. Numerous error metrics exist for this purpose, and each focuses on a specific aspect of the relationship between reference and model data. Thus, a comprehensive evaluation demands the use of multiple error metrics. However, this can lead to confusion. We propose a clustering technique to reduce the number of error metrics needed and a composite error metric to simplify the interpretation.
Richard Maier, Fabian Jakub, Claudia Emde, Mihail Manev, Aiko Voigt, and Bernhard Mayer
Geosci. Model Dev., 17, 3357–3383, https://doi.org/10.5194/gmd-17-3357-2024, https://doi.org/10.5194/gmd-17-3357-2024, 2024
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Based on the TenStream solver, we present a new method to accelerate 3D radiative transfer towards the speed of currently used 1D solvers. Using a shallow-cumulus-cloud time series, we evaluate the performance of this new solver in terms of both speed and accuracy. Compared to a 3D benchmark simulation, we show that our new solver is able to determine much more accurate irradiances and heating rates than a 1D δ-Eddington solver, even when operated with a similar computational demand.
Julia Maillard, Jean-Christophe Raut, and François Ravetta
Geosci. Model Dev., 17, 3303–3320, https://doi.org/10.5194/gmd-17-3303-2024, https://doi.org/10.5194/gmd-17-3303-2024, 2024
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Atmospheric models struggle to reproduce the strong temperature inversions in the vicinity of the surface over forested areas in the Arctic winter. In this paper, we develop modified simplified versions of surface layer schemes widely used by the community. Our modifications are used to correct the fact that original schemes place strong limits on the turbulent collapse, leading to a lower surface temperature gradient at low wind speeds. Modified versions show a better performance.
Jana Fischereit, Henrik Vedel, Xiaoli Guo Larsén, Natalie E. Theeuwes, Gregor Giebel, and Eigil Kaas
Geosci. Model Dev., 17, 2855–2875, https://doi.org/10.5194/gmd-17-2855-2024, https://doi.org/10.5194/gmd-17-2855-2024, 2024
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Wind farms impact local wind and turbulence. To incorporate these effects in weather forecasting, the explicit wake parameterization (EWP) is added to the forecasting model HARMONIE–AROME. We evaluate EWP using flight data above and downstream of wind farms, comparing it with an alternative wind farm parameterization and another weather model. Results affirm the correct implementation of EWP, emphasizing the necessity of accounting for wind farm effects in accurate weather forecasting.
Clément Bouvier, Daan van den Broek, Madeleine Ekblom, and Victoria A. Sinclair
Geosci. Model Dev., 17, 2961–2986, https://doi.org/10.5194/gmd-17-2961-2024, https://doi.org/10.5194/gmd-17-2961-2024, 2024
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An analytical initial background state has been developed for moist baroclinic wave simulation on an aquaplanet and implemented into OpenIFS. Seven parameters can be controlled, which are used to generate the background states and the development of baroclinic waves. The meteorological and numerical stability has been assessed. Resulting baroclinic waves have proven to be realistic and sensitive to the jet's width.
Jelena Radović, Michal Belda, Jaroslav Resler, Kryštof Eben, Martin Bureš, Jan Geletič, Pavel Krč, Hynek Řezníček, and Vladimír Fuka
Geosci. Model Dev., 17, 2901–2927, https://doi.org/10.5194/gmd-17-2901-2024, https://doi.org/10.5194/gmd-17-2901-2024, 2024
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Boundary conditions are of crucial importance for numerical model (e.g., PALM) validation studies and have a large influence on the model results, especially when studying the atmosphere of real, complex, and densely built urban environments. Our experiments with different driving conditions for the large-eddy simulation model PALM show its strong dependency on boundary conditions, which is important for the proper separation of errors coming from the boundary conditions and the model itself.
Siyuan Chen, Yi Zhang, Yiming Wang, Zhuang Liu, Xiaohan Li, and Wei Xue
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-68, https://doi.org/10.5194/gmd-2024-68, 2024
Revised manuscript accepted for GMD
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This study explores strategies and techniques for implementing mixed-precision code optimization within an atmosphere model dynamical core. The equation terms in the governing equations that are sensitive (insensitive) to the precision level have been identified. The performance of mixed-precision computing for weather and climate simulations was analyzed.
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Short summary
Dry deposition to vegetation is a major sink of ground-level ozone. Its parameterization in atmospheric chemistry models represents a significant source of uncertainty for global tropospheric ozone. We extended the current model parameterization with a relevant pathway and important meteorological adjustment factors. The comparison with measurements shows that this enables a more realistic model representation of ozone dry deposition velocity. Globally, annual dry deposition loss increases.
Dry deposition to vegetation is a major sink of ground-level ozone. Its parameterization in...
