Articles | Volume 11, issue 11
https://doi.org/10.5194/gmd-11-4399-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-11-4399-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model evaluation paper
| 
02 Nov 2018
Model evaluation paper |
| 02 Nov 2018
| 02 Nov 2018
Carbon–nitrogen coupling under three schemes of model representation: a traceability analysis
Zhenggang Du
Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Center for Global Change and Ecological Forecasting, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200062, China
Ensheng Weng
Center for Climate Systems Research, Columbia University, NASA Goddard Institute for Space Studies, 2880 Broadway, New York, NY 10025, USA
Lifen Jiang
Center for Ecosystem Science and Society, Northern Arizona University, AZ, USA
Center for Ecosystem Science and Society, Northern Arizona University, AZ, USA
Department for Earth System Science, Tsinghua University, Beijing 100084, China
Jianyang Xia
CORRESPONDING AUTHOR
Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Center for Global Change and Ecological Forecasting, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200062, China
Forest Ecosystem Research and Observation Station in Putuo Island, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200062, China
Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Center for Global Change and Ecological Forecasting, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200062, China
Shanghai Institute of Pollution Control and Ecological Security, 1515 North Zhongshan Rd, Shanghai 200437, China
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Hongkai Gao, Markus Hrachowitz, Lan Wang-Erlandsson, Fabrizio Fenicia, Qiaojuan Xi, Jianyang Xia, Wei Shao, Ge Sun, and Hubert H. G. Savenije
Hydrol. Earth Syst. Sci., 28, 4477–4499, https://doi.org/10.5194/hess-28-4477-2024, https://doi.org/10.5194/hess-28-4477-2024, 2024
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The concept of the root zone is widely used but lacks a precise definition. Its importance in Earth system science is not well elaborated upon. Here, we clarified its definition with several similar terms to bridge the multi-disciplinary gap. We underscore the key role of the root zone in the Earth system, which links the biosphere, hydrosphere, lithosphere, atmosphere, and anthroposphere. To better represent the root zone, we advocate for a paradigm shift towards ecosystem-centred modelling.
Kevin R. Wilcox, Scott L. Collins, Alan K. Knapp, William Pockman, Zheng Shi, Melinda D. Smith, and Yiqi Luo
Biogeosciences, 20, 2707–2725, https://doi.org/10.5194/bg-20-2707-2023, https://doi.org/10.5194/bg-20-2707-2023, 2023
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The capacity for carbon storage (C capacity) is an attribute that determines how ecosystems store carbon in the future. Here, we employ novel data–model integration techniques to identify the carbon capacity of six grassland sites spanning the US Great Plains. Hot and dry sites had low C capacity due to less plant growth and high turnover of soil C, so they may be a C source in the future. Alternately, cooler and wetter ecosystems had high C capacity, so these systems may be a future C sink.
Jennifer A. Holm, David M. Medvigy, Benjamin Smith, Jeffrey S. Dukes, Claus Beier, Mikhail Mishurov, Xiangtao Xu, Jeremy W. Lichstein, Craig D. Allen, Klaus S. Larsen, Yiqi Luo, Cari Ficken, William T. Pockman, William R. L. Anderegg, and Anja Rammig
Biogeosciences, 20, 2117–2142, https://doi.org/10.5194/bg-20-2117-2023, https://doi.org/10.5194/bg-20-2117-2023, 2023
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Unprecedented climate extremes (UCEs) are expected to have dramatic impacts on ecosystems. We present a road map of how dynamic vegetation models can explore extreme drought and climate change and assess ecological processes to measure and reduce model uncertainties. The models predict strong nonlinear responses to UCEs. Due to different model representations, the models differ in magnitude and trajectory of forest loss. Therefore, we explore specific plant responses that reflect knowledge gaps.
Ensheng Weng, Igor Aleinov, Ram Singh, Michael J. Puma, Sonali S. McDermid, Nancy Y. Kiang, Maxwell Kelley, Kevin Wilcox, Ray Dybzinski, Caroline E. Farrior, Stephen W. Pacala, and Benjamin I. Cook
Geosci. Model Dev., 15, 8153–8180, https://doi.org/10.5194/gmd-15-8153-2022, https://doi.org/10.5194/gmd-15-8153-2022, 2022
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We develop a demographic vegetation model to improve the representation of terrestrial vegetation dynamics and ecosystem biogeochemical cycles in the Goddard Institute for Space Studies ModelE. The individual-based competition for light and soil resources makes the modeling of eco-evolutionary optimality possible. This model will enable ModelE to simulate long-term biogeophysical and biogeochemical feedbacks between the climate system and land ecosystems at decadal to centurial temporal scales.
Shuang Ma, Lifen Jiang, Rachel M. Wilson, Jeff P. Chanton, Scott Bridgham, Shuli Niu, Colleen M. Iversen, Avni Malhotra, Jiang Jiang, Xingjie Lu, Yuanyuan Huang, Jason Keller, Xiaofeng Xu, Daniel M. Ricciuto, Paul J. Hanson, and Yiqi Luo
Biogeosciences, 19, 2245–2262, https://doi.org/10.5194/bg-19-2245-2022, https://doi.org/10.5194/bg-19-2245-2022, 2022
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The relative ratio of wetland methane (CH4) emission pathways determines how much CH4 is oxidized before leaving the soil. We found an ebullition modeling approach that has a better performance in deep layer pore water CH4 concentration. We suggest using this approach in land surface models to accurately represent CH4 emission dynamics and response to climate change. Our results also highlight that both CH4 flux and belowground concentration data are important to constrain model parameters.
Xin Huang, Dan Lu, Daniel M. Ricciuto, Paul J. Hanson, Andrew D. Richardson, Xuehe Lu, Ensheng Weng, Sheng Nie, Lifen Jiang, Enqing Hou, Igor F. Steinmacher, and Yiqi Luo
Geosci. Model Dev., 14, 5217–5238, https://doi.org/10.5194/gmd-14-5217-2021, https://doi.org/10.5194/gmd-14-5217-2021, 2021
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In the data-rich era, data assimilation is widely used to integrate abundant observations into models to reduce uncertainty in ecological forecasting. However, applications of data assimilation are restricted by highly technical requirements. To alleviate this technical burden, we developed a model-independent data assimilation (MIDA) module which is friendly to ecologists with limited programming skills. MIDA also supports a flexible switch of different models or observations in DA analysis.
Erqian Cui, Chenyu Bian, Yiqi Luo, Shuli Niu, Yingping Wang, and Jianyang Xia
Biogeosciences, 17, 6237–6246, https://doi.org/10.5194/bg-17-6237-2020, https://doi.org/10.5194/bg-17-6237-2020, 2020
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Mean annual net ecosystem productivity (NEP) is related to the magnitude of the carbon sink of a specific ecosystem, while its inter-annual variation (IAVNEP) characterizes the stability of such a carbon sink. Thus, a better understanding of the co-varying NEP and IAVNEP is critical for locating the major and stable carbon sinks on land. Based on daily NEP observations from eddy-covariance sites, we found local indicators for the spatially varying NEP and IAVNEP, respectively.
Jian Zhou, Jianyang Xia, Ning Wei, Yufu Liu, Chenyu Bian, Yuqi Bai, and Yiqi Luo
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-76, https://doi.org/10.5194/gmd-2020-76, 2020
Revised manuscript not accepted
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The increase of model complexity and data volume challenges the evaluation of Earth system models (ESMs), which mainly stems from the untraceable, unautomatic, and high computational costs. Here, we built up an online Traceability analysis system for Model Evaluation (TraceME), which is traceable, automatic and shareable. The TraceME (v1.0) can trace the structural uncertainty of simulated carbon (C) storage in ESMs and provide some new implications for the next generation of model evaluation.
Ensheng Weng, Ray Dybzinski, Caroline E. Farrior, and Stephen W. Pacala
Biogeosciences, 16, 4577–4599, https://doi.org/10.5194/bg-16-4577-2019, https://doi.org/10.5194/bg-16-4577-2019, 2019
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Our study illustrates that the competition processes for light and soil resources in a game-theoretic vegetation demographic model can substantially change the prediction of the contribution of ecosystems to the global carbon cycle. The model that tracks the competitive allocation strategies can generate significantly different ecosystem-level predictions than those with fixed allocation strategies.
Yuanyuan Huang, Mark Stacy, Jiang Jiang, Nilutpal Sundi, Shuang Ma, Volodymyr Saruta, Chang Gyo Jung, Zheng Shi, Jianyang Xia, Paul J. Hanson, Daniel Ricciuto, and Yiqi Luo
Geosci. Model Dev., 12, 1119–1137, https://doi.org/10.5194/gmd-12-1119-2019, https://doi.org/10.5194/gmd-12-1119-2019, 2019
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Predicting future changes in ecosystem services is not only highly desirable but is also becoming feasible as several forces are converging to transform ecological research into quantitative forecasting. To realize ecological forecasting, we have developed an Ecological Platform for Assimilating Data (EcoPAD) into models. EcoPAD also has the potential to become an interactive tool for resource management, stimulate citizen science in ecology, and transform environmental education.
Jing Wang, Jianyang Xia, Xuhui Zhou, Kun Huang, Jian Zhou, Yuanyuan Huang, Lifen Jiang, Xia Xu, Junyi Liang, Ying-Ping Wang, Xiaoli Cheng, and Yiqi Luo
Biogeosciences, 16, 917–926, https://doi.org/10.5194/bg-16-917-2019, https://doi.org/10.5194/bg-16-917-2019, 2019
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Soil is critical in mitigating climate change mainly because soil carbon turns over much slower in soils than vegetation and the atmosphere. However, Earth system models (ESMs) have large uncertainty in simulating carbon dynamics due to their biased estimation of soil carbon transit time (τsoil). Here, the τsoil estimates from 12 ESMs that participated in CMIP5 were evaluated by a database of measured τsoil. We detected a large spatial variation in measured τsoil across the globe.
Qianyu Li, Xingjie Lu, Yingping Wang, Xin Huang, Peter M. Cox, and Yiqi Luo
Biogeosciences, 15, 6909–6925, https://doi.org/10.5194/bg-15-6909-2018, https://doi.org/10.5194/bg-15-6909-2018, 2018
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Land-surface models have been widely used to predict the responses of terrestrial ecosystems to climate change. A better understanding of model mechanisms that govern terrestrial ecosystem responses to rising atmosphere [CO2] is needed. Our study for the first time shows that the expansion of leaf area under rising [CO2] is the most important response for the stimulation of land carbon accumulation by a land-surface model: CABLE. Processes related to leaf area should be better calibrated.
Xingjie Lu, Ying-Ping Wang, Yiqi Luo, and Lifen Jiang
Biogeosciences, 15, 6559–6572, https://doi.org/10.5194/bg-15-6559-2018, https://doi.org/10.5194/bg-15-6559-2018, 2018
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How long does C cycle through terrestrial ecosystems is a critical question for understanding land C sequestration capacity under future rising atmosphere [CO2] and climate warming. Under climate change, previous conventional concepts with a steady-state assumption will no longer be suitable for a non-steady state. Our results using the new concept, C transit time, suggest more significant responses in terrestrial C cycle under rising [CO2] and climate warming.
Yilong Wang, Philippe Ciais, Daniel Goll, Yuanyuan Huang, Yiqi Luo, Ying-Ping Wang, A. Anthony Bloom, Grégoire Broquet, Jens Hartmann, Shushi Peng, Josep Penuelas, Shilong Piao, Jordi Sardans, Benjamin D. Stocker, Rong Wang, Sönke Zaehle, and Sophie Zechmeister-Boltenstern
Geosci. Model Dev., 11, 3903–3928, https://doi.org/10.5194/gmd-11-3903-2018, https://doi.org/10.5194/gmd-11-3903-2018, 2018
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We present a new modeling framework called Global Observation-based Land-ecosystems Utilization Model of Carbon, Nitrogen and Phosphorus (GOLUM-CNP) that combines a data-constrained C-cycle analysis with data-driven estimates of N and P inputs and losses and with observed stoichiometric ratios. GOLUM-CNP provides a traceable tool, where a consistency between different datasets of global C, N, and P cycles has been achieved.
Liming Yan, Xiaoni Xu, and Jianyang Xia
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-124, https://doi.org/10.5194/bg-2018-124, 2018
Manuscript not accepted for further review
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The patterns of the ratio of atmospheric deposited ammonium- to nitrate-N shows an increasing trend with the total N load since the industrial revolution. As a key role of N in plant growth, it is important to know the general response patterns of plant growth to N forms. By the synthesized dataset and meta-analysis, we found a higher response of plant growth to NH4+-N than NO3−-N addition across all species. Our results suggest plant could more positively respond to N deposition in the future.
Yaner Yan, Xuhui Zhou, Lifeng Jiang, and Yiqi Luo
Biogeosciences, 14, 5441–5454, https://doi.org/10.5194/bg-14-5441-2017, https://doi.org/10.5194/bg-14-5441-2017, 2017
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The effects of C turnover time on ecosystem C storage have not been well explored, so we quantified the spatial variation in ecosystem C storage over time from changes in C turnover time and/or NPP. Our results showed that the terrestrial C release caused by the decrease in MTT only accounted for about 13.5 % of that due to the change in NPP uptake. However, the larger uncertainties in the spatial variation of MTT than temporal changes would lead to a greater impact on ecosystem C storage.
Yiqi Luo, Zheng Shi, Xingjie Lu, Jianyang Xia, Junyi Liang, Jiang Jiang, Ying Wang, Matthew J. Smith, Lifen Jiang, Anders Ahlström, Benito Chen, Oleksandra Hararuk, Alan Hastings, Forrest Hoffman, Belinda Medlyn, Shuli Niu, Martin Rasmussen, Katherine Todd-Brown, and Ying-Ping Wang
Biogeosciences, 14, 145–161, https://doi.org/10.5194/bg-14-145-2017, https://doi.org/10.5194/bg-14-145-2017, 2017
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Climate change is strongly regulated by land carbon cycle. However, we lack the ability to predict future land carbon sequestration. Here, we develop a novel framework for understanding what determines the direction and rate of future change in land carbon storage. The framework offers a suite of new approaches to revolutionize land carbon model evaluation and improvement.
E. S. Weng, S. Malyshev, J. W. Lichstein, C. E. Farrior, R. Dybzinski, T. Zhang, E. Shevliakova, and S. W. Pacala
Biogeosciences, 12, 2655–2694, https://doi.org/10.5194/bg-12-2655-2015, https://doi.org/10.5194/bg-12-2655-2015, 2015
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We present a model, LM3-PPA, which simulates vegetation dynamics and biogeochemical processes by explicitly scaling from individual plants to ecosystems using the perfect plasticity approximation. It includes height-structured competition for light- and root-allocation-dependent competition for belowground resources. Because of the tractability of the PPA, the coupled LM3-PPA model is able to retain computational tractability, as well as close linkages to mathematically tractable special cases.
P. C. Stoy, M. C. Dietze, A. D. Richardson, R. Vargas, A. G. Barr, R. S. Anderson, M. A. Arain, I. T. Baker, T. A. Black, J. M. Chen, R. B. Cook, C. M. Gough, R. F. Grant, D. Y. Hollinger, R. C. Izaurralde, C. J. Kucharik, P. Lafleur, B. E. Law, S. Liu, E. Lokupitiya, Y. Luo, J. W. Munger, C. Peng, B. Poulter, D. T. Price, D. M. Ricciuto, W. J. Riley, A. K. Sahoo, K. Schaefer, C. R. Schwalm, H. Tian, H. Verbeeck, and E. Weng
Biogeosciences, 10, 6893–6909, https://doi.org/10.5194/bg-10-6893-2013, https://doi.org/10.5194/bg-10-6893-2013, 2013
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Biogeosciences
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Learning from conceptual models – a study of emergence of cooperation towards resource protection in a social-ecological system
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
BOATSv2: New ecological and economic features improve simulations of High Seas catch and effort
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of carbon cycle in Central European beech forests
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
A dynamical process-based model AMmonia–CLIMate v1.0 (AMCLIM v1.0) for quantifying global agricultural ammonia emissions – Part 1: Land module for simulating emissions from synthetic fertilizer use
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water, and nitrogen perturbations
A novel Eulerian model based on central moments to simulate age and reactivity continua interacting with mixing processes
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO, and NH3 emissions from enhanced rock weathering with croplands
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
Modeling of non-structural carbohydrate dynamics by the spatially explicit individual-based dynamic global vegetation model SEIB-DGVM (SEIB-DGVM-NSC version 1.0)
Simulating Bark Beetle Outbreak Dynamics and their Influence on Carbon Balance Estimates with ORCHIDEE r7791
MEDFATE 2.9.3: a trait-enabled model to simulate Mediterranean forest function and dynamics at regional scales
Modelling the role of livestock grazing in C and N cycling in grasslands with LPJmL5.0-grazing
Implementation of trait-based ozone plant sensitivity in the Yale Interactive terrestrial Biosphere model v1.0 to assess global vegetation damage
The Permafrost and Organic LayEr module for Forest Models (POLE-FM) 1.0
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-57, https://doi.org/10.5194/gmd-2024-57, 2024
Revised manuscript accepted for GMD
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Social-ecological systems are the subject of many sustainability problems. Because of the complexity of these systems we must be careful when intervening in them, otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation, and simulated an intervention measure to save a forest from infestation.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-26, https://doi.org/10.5194/gmd-2024-26, 2024
Revised manuscript accepted for GMD
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Numerical models that capture key features of the global dynamics of fish communities play a crucial role in addressing the impacts of climate change and industrial fishing on ecosystems and societies. Here, we detail an update of the BiOeconomic marine Trophic Size-spectrum model that corrects the model representation of the dynamic of fisheries in the High Seas. This update also allows a better representation of biodiversity to improve future global and regional fisheries studies.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošeľa, Doroteja Bitunjac, Masa Zorana Ostrogovic Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-45, https://doi.org/10.5194/gmd-2024-45, 2024
Revised manuscript accepted for GMD
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We developed a multi-objective calibration approach leading to robust parameter values, aiming to strike a balance between their local precision and broad applicability. Using Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
EGUsphere, https://doi.org/10.5194/egusphere-2024-962, https://doi.org/10.5194/egusphere-2024-962, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use, whilst taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers were lost due to NH3 emissions. Hot and dry conditions and regions with high pH soils can expect higher NH3 emissions.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, and Christoph Müller
EGUsphere, https://doi.org/10.5194/egusphere-2023-2946, https://doi.org/10.5194/egusphere-2023-2946, 2024
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We present a new approach to model biological nitrogen fixation (BNF) in the Lund Potsdam Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, the nitrogen (N) deficit and carbon (C) costs. The new approach improved global sums and spatial patterns of BNF compared to the scientific literature and the models’ ability to project future C and N cycle dynamics.
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
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This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
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We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
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Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
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The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
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We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
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Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
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We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
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Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
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In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
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Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
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This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
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Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
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Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne-Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
EGUsphere, https://doi.org/10.5194/egusphere-2023-1216, https://doi.org/10.5194/egusphere-2023-1216, 2023
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This research looks at how climate change influences forests, particularly how altered wind and insect activities could make forests emit, instead of absorb, carbon. We've updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, like insect outbreaks, can dramatically affect carbon storage, offering crucial insights for tackling climate change.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
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Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
Jens Heinke, Susanne Rolinski, and Christoph Müller
Geosci. Model Dev., 16, 2455–2475, https://doi.org/10.5194/gmd-16-2455-2023, https://doi.org/10.5194/gmd-16-2455-2023, 2023
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We develop a livestock module for the global vegetation model LPJmL5.0 to simulate the impact of grazing dairy cattle on carbon and nitrogen cycles in grasslands. A novelty of the approach is that it accounts for the effect of feed quality on feed uptake and feed utilization by animals. The portioning of dietary nitrogen into milk, feces, and urine shows very good agreement with estimates obtained from animal trials.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina M. Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander W. Cheesman, Yansen Xu, and Maria Carolina Duran Rojas
Geosci. Model Dev., 16, 2261–2276, https://doi.org/10.5194/gmd-16-2261-2023, https://doi.org/10.5194/gmd-16-2261-2023, 2023
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Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained nor fully implemented in large-scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP, with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Winslow D. Hansen, Adrianna Foster, Benjamin Gaglioti, Rupert Seidl, and Werner Rammer
Geosci. Model Dev., 16, 2011–2036, https://doi.org/10.5194/gmd-16-2011-2023, https://doi.org/10.5194/gmd-16-2011-2023, 2023
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Permafrost and the thick soil-surface organic layers that insulate permafrost are important controls of boreal forest dynamics and carbon cycling. However, both are rarely included in process-based vegetation models used to simulate future ecosystem trajectories. To address this challenge, we developed a computationally efficient permafrost and soil organic layer module that operates at fine spatial (1 ha) and temporal (daily) resolutions.
Cited articles
Ahlström, A., Xia, J., Arneth, A., Luo, Y., and Smith, B.: Importance of
vegetation dynamics for future terrestrial carbon cycling, Environ. Res.
Lett., 10, 089501, https://doi.org/10.1088/1748-9326/10/8/089501, 2015.
Arora, V., Boer, G., Friedlingstein, P., Eby, M., Jones, C., Christian, J.,
Bonan, G., Bopp, L., Brovkin, V., Cadule, P., and Hajima, T.:
Carbon–concentration and carbon–climate feedbacks in CMIP5 Earth system
models, J. Climate, 26, 5289–5314, 2013.
Cleveland, C., Townsend, A., Schimel, D., Fisher, H., Howarth, R., Hedin, L.,
Perakis, S., Latty, E., Von Fischer, J., Elseroad, A., and Wasson, M.: Global
patterns of terrestrial biological nitrogen (N2) fixation in natural
ecosystems, Global Biogeochem. Cy., 13, 623–645, 1999.
Cleveland, C., Houlton, B., Smith, W., Marklein, A., Reed, S., Parton, W.,
Del Grosso, S., and Running, S.: Patterns of new versus recycled primary
production in the terrestrial biosphere, P. Natl. Acad. Sci. USA, 110,
12733–12737, 2013.
Craine, J., Brookshire, E., Cramer, M., Hasselquist, N., Koba, K.,
Marin-Spiotta, E., and Wang, L.: Ecological interpretations of nitrogen
isotope ratios of terrestrial plants and soils, Plant Soil, 396, 1–26, 2015.
Denison, R. and Loomis, R.: An integrative physiological model of alfalfa
growth and development, Publication/University of California, Division of
Agriculture and Natural Resources, USA, 1989.
Du, Z., Zhou, X., Shao, J., Yu, G., Wang, H., Zhai, D., Xia, J., and Luo, Y.:
Quantifying uncertainties from additional nitrogen data and processes in a
terrestrial ecosystem model with Bayesian probabilistic inversion, J. Adv.
Model. Earth Sy., 9, 548–565, 2017.
Du, Z., Weng, E., Jiang, L., Luo, Y., Xia, J., and Zhou X.: zgdu/TECO-CN-2.0,
https://github.com/zgdu/TECO-CN-2.0-new, last access: 20 April 2018.
Farquhar, G., Caemmerer, S., and Berry, J.: A biochemical model of
photosynthetic CO2 assimilation in leaves of C3 species, Planta,
149, 78–90, 1980.
Field, C. H. and Mooney, H. A.: Photosynthesis–nitrogen relationship in wild
plants, in: On the Economy of Plant Form and Function, edited by: Givnish, T.
J., Cambridge University Press, Cambridge, UK, 25–55, 1986.
Finzi, A., Norby, R., Calfapietra, C., Gallet-Budynek, A., Gielen, B.,
Holmes, W., Hoosbeek, M., Iversen, C., Jackson, R., Kubiske, M., and Ledford,
J.: Increases in nitrogen uptake rather than nitrogen-use efficiency support
higher rates of temperate forest productivity under elevated CO2,
P. Natl. Acad. Sci. USA, 104, 14014–14019, 2007.
García-Palacios, P., Maestre, F., Kattge, J., and Wall, D.: Climate and
litter quality differently modulate the effects of soil fauna on litter
decomposition across biomes, Ecol. Lett., 16, 1045–1053, 2013.
Gerber, S., Hedin, L., Oppenheimer, M., Pacala, S., and Shevliakova, E.:
Nitrogen cycling and feedbacks in a global dynamic land model, Global
Biogeochem. Cy., 24, GB1001, https://doi.org/10.1029/2008GB003336, 2010.
Gutschick, V.: Evolved strategies of nitrogen acquisition by plants, Am.
Nat., 118, 607–637, 1981.
Hu, S., Chapin, F. S., Firestone, M. K., Field, C. B., and Chiariello, N. R.:
Nitrogen limitation of microbial decomposition in a grassland under elevated
CO2, Nature, 409, 188–191, 2001.
Huang, Y., Lu, X., Shi, Z., Lawrence, D., Koven, C., Xia, J., Du, Z., Kluzek,
E., and Luo, Y.: Matrix approach to land carbon cycle modeling: A case study
with the Community Land Model, Glob. Change Biol., 24, 1394–1404, 2018.
Hungate, B. A., Dukes, J. S., Shaw, M. R., Luo, Y., and Field, C. B.:
Nitrogen and climate change, Science, 302, 1512–1513, 2003.
Koven, C. D., Riley, W. J., Subin, Z. M., Tang, J. Y., Torn, M. S., Collins,
W. D., Bonan, G. B., Lawrence, D. M., and Swenson, S. C.: The effect of
vertically resolved soil biogeochemistry and alternate soil C and N models on
C dynamics of CLM4, Biogeosciences, 10, 7109–7131,
https://doi.org/10.5194/bg-10-7109-2013, 2013.
Kronzucker H., Siddiqi, M., and Glass, A.: Kinetics Of NO3- Influx In Spruce,
Plant Physiol., 109, 319–326, 1995.
Kronzucker H., Siddiqi, M., and Glass, A.: Kinetics of
Kuzyakov, Y. and Xu, X.: Competition between roots and microorganisms for
nitrogen: mechanisms and ecological relevance, New Phytol., 198, 656–669,
2013.
LeBauer, D. and Treseder, K.: Nitrogen limitation of net primary productivity
in terrestrial ecosystems is globally distributed, Ecology, 89, 371–379,
2008.
Lichter, J., Billings, S., Ziegler, S., Gaindh, D., Ryals, R., Finzi, A.,
Jackson, R., Stemmler, E., and Schlesinger, W.: Soil carbon sequestration in
a pine forest after 9 years of atmospheric CO2 enrichment, Glob.
Change Biol., 14, 2910–2922, 2008.
Luo Y. and Reynolds J.: Validity of extrapolating field CO2
experiments to predict carbon sequestration in natural ecosystems, Ecology,
80, 1568–1583, 1999.
Luo, Y. and Weng, E.: Dynamic disequilibrium of the terrestrial carbon cycle
under global change, Trends Ecol. Evol., 26, 96–104, 2011.
Luo, Y., Meyerhoff, P., and Loomis, R.: Seasonal patterns and vertical
distributions of fine roots of alfalfa (Medicago sativa L.), Field
Crop. Res., 40, 119–127, 1995.
Luo, Y., White, L., Canadell, J., DeLucia, E., Ellsworth, D., Finzi, A.,
Lichter J., and Schlesinger, W.: Sustainability of terrestrial carbon
sequestration: a case study in Duke Forest with inversion approach, Global
Biogeochem. Cy., 17, 1021, https://doi.org/10.1029/2002GB001923, 2003.
Luo, Y., Su, B., Currie, W., Dukes, J., Finzi, A., Hartwig, U., Hungate, B.,
McMurtrie, R., Oren, R., Parton, W., and Pataki, D.: Progressive nitrogen
limitation of ecosystem responses to rising atmospheric carbon dioxide,
BioScience, 54, 731–739, 2004.
Luo, Y., Keenan, T., and Smith, M.: Predictability of the terrestrial carbon
cycle, Glob. Change Biol., 21, 1737–1751, 2015.
Manzoni, S., Trofymow, J. A., Jackson, R. B., and Porporato, A.:
Stoichiometric controls on carbon, nitrogen, and phosphorus dynamics in
decomposing litter, Ecol. Monogr., 80, 89–106, 2010.
McCarthy, H., Oren, R., Johnsen, K., Gallet-Budynek, A., Pritchard, S., Cook,
C., LaDeau, S., Jackson, R., and Finzi, A.: Re-assessment of plant carbon
dynamics at the Duke free-air CO2 enrichment site: interactions of
atmospheric [CO2] with nitrogen and water vailability over stand
development, New Phytol., 185, 514–528, 2010.
McMurtrie, R., Iversen, C., Dewar, R., Medlyn, B., Nasholm, T., Pepper, D.,
and Norby R.: Plant root distributions and nitrogen uptake predicted by a
hypothesis of optimal root foraging, Ecol. Evol., 2, 1235–1250, 2012.
Melillo J., McGuire A., Kicklighter D., Moore B., Vorosmarty C., and Schloss,
A.: Global climate change and terrestrial net primary production, Nature,
363, 234–240, 1993.
Menge, D., Pacala, S., and Hedin, L.: Emergence and maintenance of nutrient
limitation over multiple timescales in terrestrial ecosystems, Am. Nat., 173,
164–175, 2009.
Meyerholt, J., Zaehle, S., and Smith, M. J.: Variability of projected
terrestrial biosphere responses to elevated levels of atmospheric CO2
due to uncertainty in biological nitrogen fixation, Biogeosciences, 13,
1491–1518, https://doi.org/10.5194/bg-13-1491-2016, 2016.
Oleson, K., Lawrence, M., Bonan, B., Drewniak, B., Huang, M., Koven, D.,
Levis, S., Li, F., Riley, J., Subin, M., and Swenson, S.: Technical
description of version 4.5 of the Community Land Model (CLM), NCAR, Technical
Note NCAR/TN-503+STR, Boulder, CO., 244–305, 2013.
Rafique, R., Xia, J., Hararuk, O., Asrar, G. R., Leng, G., Wang, Y., and Luo,
Y.: Divergent predictions of carbon storage between two global land models:
attribution of the causes through traceability analysis, Earth Syst. Dynam.,
7, 649–658, https://doi.org/10.5194/esd-7-649-2016, 2016.
Rastetter, E., Agren, G., and Shaver, G.: Responses of N-limited ecosystems
to increased CO2: a balanced-nutrition, coupled-element-cycles model,
Ecol. Appl., 7, 444–460, 1997.
Rastetter, E., Vitousek, P., Field, C., Shaver, G., Herbert, D., and Agren,
G.: Resource optimization and symbiotic nitrogen fixation, Ecosystems, 4,
369–388, 2001.
Shevliakova, E., Pacala, S. W., Malyshev, S., Hurtt, G. C., Milly, P. C. D.,
Caspersen, J. P., Sentman, L. T., Fisk, J. P., Wirth, C., and Crevoisier, C.:
Carbon cycling under 300 years of land use change: Importance of the
secondary vegetation sink, Global Biogeochem. Cy., 23, GB2022,
https://doi.org/10.1029/2007GB003176, 2009.
Shi, Z., Yang, Y., Zhou, X., Weng, E., Finzi, A. C., and Luo, Y.: Inverse
analysis of coupled carbon–nitrogen cycles against multiple datasets at
ambient and elevated CO2, J. Plant. Ecol., 9, 285–295, 2015.
Shi, Z., Crowell, S., Luo, Y., and Moore, B.: Model structures amplify
uncertainty in predicted soil carbon responses to climate change, Nat.
Commun., 9, 2171, https://doi.org/10.1038/s41467-018-04526-9, 2018.
Sokolov, A. P., Kicklighter, D. W., Melillo, J. M., Felzer, B. S., Schlosser,
C. A., and Cronin, T. W.: Consequences of considering carbon–nitrogen
interactions on the feedbacks between climate and the terrestrial carbon
cycle, J. Climate, 21, 3776–3796, 2008.
Sprugel, D., Ryan, M., Brooks, J., Vogt, K., and Martin, T.: Respiration from
the organ level to the stand, in: Resource Physiology of Conifers, edited by:
Smith, W. K. and Hinckley, T. M., Academic Press, San Diego, CA, 255–299,
1995.
Terrer, C., Vicca, S., Hungate, B., Phillips, R., and Prentice, I.:
Mycorrhizal association as a primary control of the CO2 fertilization
effect, Science, 353, 72–74, 2016.
Thomas, R., Zaehle, S., Templer, P., and Goodale, C.: Global patterns of
nitrogen limitation: confronting two global biogeochemical models with
observations. Glob. Change Biol., 19, 2986–2998, 2013.
Thomas, R., Brookshire, E., and Gerber, S.: Nitrogen limitation on land: how
can it occur in Earth system models?, Glob. Change Biol., 21, 1777–1793,
2015.
Thompson, M. and Randerson, J.: Impulse response functions of terrestrial
carbon cycle models: method and application, Glob. Change Biol., 5, 371–394,
1999.
Thornton, P., Lamarque, J., Rosenbloom, N., and Mahowald, N.: Influence of
carbon-nitrogen cycle coupling on land model response to CO2
fertilization and climate variability, Global biogeochem. Cy., 21, GB4018,
https://doi.org/10.1029/2006GB002868, 2007.
Todd-Brown, K. E. O., Randerson, J. T., Post, W. M., Hoffman, F. M.,
Tarnocai, C., Schuur, E. A. G., and Allison, S. D.: Causes of variation in
soil carbon simulations from CMIP5 Earth system models and comparison with
observations, Biogeosciences, 10, 1717–1736, https://doi.org/10.5194/bg-10-1717-2013,
2013.
van Oijen, M. and Levy, P.: Nitrogen metabolism and plant adaptation to the
environment: The scope for process-based modeling, in: Nitrogen Acquisition
and Assimilation in Higher Plants, edited by: Amâncio, S. and Stulen, I.,
Springer, Dordrecht, 133–147, 2004.
Vicca, S., Luyssaert, S., Penuelas, J., Campioli, M., Chapin III, F., Ciais,
P., Heinemeyer, A., Högberg, P., Kutsch, W., Law, B., and Malhi, Y.:
Fertile forests produce biomass more efficiently, Ecol. Lett., 15, 520–526,
2012.
Vitousek, P.: Nutrient cycling and limitation: Hawai'i as a model system.
Princeton University Press, Princeton,, 2004.
Vitousek, P. and Howarth R.: Nitrogen limitation on land and in the sea: how
can it occur?, Biogeochemistry, 13, 87–115, 1991.
Walker, A., Zaehle, S., Medlyn, B., De Kauwe, M., Asao, S., Hickler, T.,
Parton, W., Ricciuto, D., Wang, Y., Wårlind, D., and Norby, R.:
Predicting long-term carbon sequestration in response to CO2
enrichment: How and why do current ecosystem models differ?, Global
Biogeochem. Cy., 29, 476–495, 2015.
Walker, A., Quaife, T., Bodegom, P., De Kauwe, M., Keenan, T., Joiner, J.,
Lomas, M., MacBean, N., Xu, C., Yang, X., and Woodward, F.: The impact of
alternative trait-scaling hypotheses for the maximum photosynthetic
carboxylation rate (Vcmax) on global gross primary production,
New Phytol., 215, 1370–1386, 2017.
Wang, S., Grant, R., Verseghy, D., and Black, T.: Modelling plant carbon and
nitrogen dynamics of a boreal aspen forest in CLASS – the Canadian Land
Surface Scheme, Ecol. Model., 142, 135–154, 2001.
Wang, Y. P. and Houlton, B. Z.: Nitrogen constrain on terrestrial carbon
uptake: implications for the global carbon-climate feedback, Geophys. Res.
Lett., 36, L24403, https://doi.org/10.1029/2009GL041009, 2009.
Wang, Y. P., Law, R. M., and Pak, B.: A global model of carbon, nitrogen and
phosphorus cycles for the terrestrial biosphere, Biogeosciences, 7,
2261–2282, https://doi.org/10.5194/bg-7-2261-2010, 2010.
Wania, R., Meissner, K. J., Eby, M., Arora, V. K., Ross, I., and Weaver, A.
J.: Carbon-nitrogen feedbacks in the UVic ESCM, Geosci. Model Dev., 5,
1137–1160, https://doi.org/10.5194/gmd-5-1137-2012, 2012.
Weng, E. and Luo, Y.: Soil hydrological properties regulate grassland
ecosystem responses to multifactor global change: A modeling analysis,
J. Geophys. Res., 113, G03003, https://doi.org/10.1029/2007JG000539, 2008.
Wieder, W., Boehnert, J., and Bonan, G.: Evaluating soil biogeochemistry
parameterizations in Earth system models with observations, Global
Biogeochem. Cy., 28, 211–222, 2014.
Wieder, W., Cleveland, C., Lawrence, D., and Bonan, G.: Effects of model
structural uncertainty on carbon cycle projections: biological nitrogen
fixation as a case study, Environ. Res. Lett., 10, 044016,
https://doi.org/10.1088/1748-9326/10/4/044016, 2015a.
Wieder, W., Cleveland, C., Smith, W., and Todd-Brown, K.: Future productivity
and carbon storage limited by terrestrial nutrient availability, Nat.
Geosci., 8, 441–444, 2015b.
Xia, J. and Wan, S.: Global response patterns of terrestrial plant species to
nitrogen addition, New Phytol., 179, 428–439, 2008.
Xia, J. Y., Luo, Y. Q., Wang, Y.-P., Weng, E. S., and Hararuk, O.: A
semi-analytical solution to accelerate spin-up of a coupled carbon and
nitrogen land model to steady state, Geosci. Model Dev., 5, 1259–1271,
https://doi.org/10.5194/gmd-5-1259-2012, 2012.
Xia, J., Luo, Y., Wang, Y., and Hararuk, O.: Traceable components of
terrestrial carbon storage capacity in biogeochemical models, Glob. Change
Biol., 19, 2104–2116, 2013.
Xu, C., Fisher, R., Wullschleger, S., Wilson, C., Cai, M., and McDowell, N.:
Toward a mechanistic modeling of nitrogen limitation on vegetation dynamics,
PloS ONE, 7, e37914, https://doi.org/10.1371/journal.pone.0037914, 2012.
Zaehle, S. and Dalmonech, D.: Carbon–nitrogen interactions on land at global
scales: current understanding in modelling climate biosphere feedbacks, Curr.
Opin. Env. Sust., 3, 311–320, 2011.
Zaehle, S. and Friend, A.: Carbon and nitrogen cycle dynamics in the O-CN
land surface model: 1. Model description, site-scale evaluation, and
sensitivity to parameter estimates, Global Biogeochem. Cy., 24, GB1005,
https://doi.org/10.1029/2009GB003521, 2010.
Zaehle, S., Medlyn, B., De Kauwe, M., Walker, A., Dietze, M., Hickler, T.,
Luo, Y., Wang, Y., El-Masri, B., Thornton, P., and Jain, A.: Evaluation of 11
terrestrial carbon-nitrogen cycle models against observations from two
temperate Free-Air CO2 Enrichment studies, New Phytol., 202,
803–822, 2014.
Zaehle, S., Jones, C., Houlton, B., Lamarque, J. and Robertson, E.: Nitrogen
availability reduces CMIP5 projections of twenty-first-century land carbon
uptake, J. Climate, 28, 2494–2511, 2015.
Zhou, L., Zhou, X., Zhang, B., Lu, M., Luo, Y., Liu, L., and Li, B.:
Different responses of soil respiration and its components to nitrogen
addition among biomes: a meta-analysis, Glob. Change Biol., 20, 2332–2343,
2014.
Zhou, S., Liang, J., Lu, X., Li, Q., Jiang, L., Zhang, Y., Schwalm, C.,
Fisher, J., Tjiputra, J., Sitch, S., and Ahlström, A.: Sources of
uncertainty in modeled land carbon storage within and across three MIPs:
Diagnosis with three new techniques, J. Climate, 31, 2833–2851, 2018.
Zhou, X., Zhou, T., and Luo, Y.: Uncertainties in carbon residence time and
NPP-driven carbon uptake in terrestrial ecosystems of the conterminous USA: a
Bayesian approach, Tellus B, 64, 17223, https://doi.org/10.3402/tellusb.v64i0.17223,
2012.
Zhu, Q., Riley, W., and Tang, J.: A new theory of plant–microbe nutrient
competition resolves inconsistencies between observations and model
predictions, Ecol. Appl., 27, 875–886, 2017.
Short summary
In this study, based on a traceability analysis technique, we evaluated alternative representations of C–N interactions and their impacts on the C cycle using the TECO model framework. Our results showed that different representations of C–N coupling processes lead to divergent effects on plant production, C residence time, and thus the ecosystem C storage capacity. Identifying those effects can help us to improve the N limitation assumptions employed in terrestrial ecosystem models.
In this study, based on a traceability analysis technique, we evaluated alternative...
