Articles | Volume 10, issue 9
https://doi.org/10.5194/gmd-10-3499-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-10-3499-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model evaluation paper
| 
22 Sep 2017
Model evaluation paper |
| 22 Sep 2017
Evaluating the effect of alternative carbon allocation schemes in a land surface model (CLM4.5) on carbon fluxes, pools, and turnover in temperate forests
Francesc Montané
CORRESPONDING AUTHOR
School of Natural Resources and the Environment, University of
Arizona, Tucson, Arizona, 85721, USA
Andrew M. Fox
School of Natural Resources and the Environment, University of
Arizona, Tucson, Arizona, 85721, USA
Avelino F. Arellano
Department of Hydrology and
Atmospheric Sciences, University of Arizona, Tucson, Arizona, 85721, USA
Natasha MacBean
School of Natural Resources and the Environment, University of
Arizona, Tucson, Arizona, 85721, USA
M. Ross Alexander
School of Natural Resources and the Environment, University of
Arizona, Tucson, Arizona, 85721, USA
Laboratory of Tree-Ring Res., University of Arizona, Tucson,
Arizona, 85721, USA
Alex Dye
Department of Geology and Geography, West
Virginia University, Morgantown, West Virginia, 26506, USA
Daniel A. Bishop
Division of Biology and Paleo Environment, Lamont-Doherty Earth
Observatory, Columbia University, Palisades, New York, 10964, USA
Valerie Trouet
Laboratory of Tree-Ring Res., University of Arizona, Tucson,
Arizona, 85721, USA
Flurin Babst
Laboratory of Tree-Ring Res., University of Arizona, Tucson,
Arizona, 85721, USA
Dendro Sciences Unit, Swiss Federal Research Institute WSL,
Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
W. Szafer
Institute of Botany, Polish Academy of Sciences, ul. Lubicz 46, 31-512
Krakow, Poland
Amy E. Hessl
Department of Geology and Geography, West
Virginia University, Morgantown, West Virginia, 26506, USA
Neil Pederson
Harvard Forest, Harvard University, Petersham,
Massachusetts, 01366, USA
Peter D. Blanken
Department of Geography, University of
Colorado, Boulder, Colorado, 80309, USA
Gil Bohrer
Department of Civil,
Environmental, and Geodetic Engineering, The Ohio State University, Columbus,
Ohio, 43210, USA
Christopher M. Gough
Department of Biology, Virginia Commonwealth
University, Richmond, Virginia, 23284, USA
Marcy E. Litvak
Department of Biology,
University of New Mexico, Albuquerque, New Mexico, 87131, USA
Kimberly A. Novick
School of Public and Environmental Affairs, Indiana University,
Bloomington, Indiana, 47405, USA
Richard P. Phillips
Department of Biology, Indiana
University, Bloomington, Indiana, 47405, USA
Jeffrey D. Wood
School of Natural
Resources, University of Missouri, Columbia, Missouri, 65211, USA
David J. P. Moore
School of Natural Resources and the Environment, University of
Arizona, Tucson, Arizona, 85721, USA
Related authors
No articles found.
Jacob A. Nelson, Sophia Walther, Fabian Gans, Basil Kraft, Ulrich Weber, Kimberly Novick, Nina Buchmann, Mirco Migliavacca, Georg Wohlfahrt, Ladislav Šigut, Andreas Ibrom, Dario Papale, Mathias Göckede, Gregory Duveiller, Alexander Knohl, Lukas Hörtnagl, Russell L. Scott, Weijie Zhang, Zayd Mahmoud Hamdi, Markus Reichstein, Sergio Aranda-Barranco, Jonas Ardö, Maarten Op de Beeck, Dave Billdesbach, David Bowling, Rosvel Bracho, Christian Brümmer, Gustau Camps-Valls, Shiping Chen, Jamie Rose Cleverly, Ankur Desai, Gang Dong, Tarek S. El-Madany, Eugenie Susanne Euskirchen, Iris Feigenwinter, Marta Galvagno, Giacomo Gerosa, Bert Gielen, Ignacio Goded, Sarah Goslee, Christopher Michael Gough, Bernard Heinesch, Kazuhito Ichii, Marcin Antoni Jackowicz-Korczynski, Anne Klosterhalfen, Sara Knox, Hideki Kobayashi, Kukka-Maaria Kohonen, Mika Korkiakoski, Ivan Mammarella, Gharun Mana, Riccardo Marzuoli, Roser Matamala, Stefan Metzger, Leonardo Montagnani, Giacomo Nicolini, Thomas O'Halloran, Jean-Marc Ourcival, Matthias Peichl, Elise Pendall, Borja Ruiz Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, Marius Schmidt, Christopher R. Schwalm, Ankit Shekhar, Richard Silberstein, Maria Lucia Silveira, Donatella Spano, Torbern Tagesson, Gianluca Tramontana, Carlo Trotta, Fabio Turco, Timo Vesala, Caroline Vincke, Domenico Vitale, Enrique R. Vivoni, Yi Wang, William Woodgate, Enrico A. Yepez, Junhui Zhang, Donatella Zona, and Martin Jung
EGUsphere, https://doi.org/10.5194/egusphere-2024-165, https://doi.org/10.5194/egusphere-2024-165, 2024
Short summary
Short summary
The movement of water, carbon, and energy from the earth surface to the atmosphere, or flux, is an important process to understand that impacts all of our lives. Here we outline a method to estimate global water and CO2 fluxes based on direct measurements from site around the world called FLUXCOM-X. We go on to demonstrate how these new estimates of net CO2 uptake/loss, gross CO2 uptake, total water evaporation, and transpiration from plants compare to previous and independent estimates.
Cédric Bacour, Natasha MacBean, Frédéric Chevallier, Sébastien Léonard, Ernest N. Koffi, and Philippe Peylin
Biogeosciences, 20, 1089–1111, https://doi.org/10.5194/bg-20-1089-2023, https://doi.org/10.5194/bg-20-1089-2023, 2023
Short summary
Short summary
The impact of assimilating different dataset combinations on regional to global-scale C budgets is explored with the ORCHIDEE model. Assimilating simultaneously multiple datasets is preferable to optimize the values of the model parameters and avoid model overfitting. The challenges in constraining soil C disequilibrium using atmospheric CO2 data are highlighted for an accurate prediction of the land sink distribution.
Marcela Silva, Ashley M. Matheny, Valentijn R. N. Pauwels, Dimetre Triadis, Justine E. Missik, Gil Bohrer, and Edoardo Daly
Geosci. Model Dev., 15, 2619–2634, https://doi.org/10.5194/gmd-15-2619-2022, https://doi.org/10.5194/gmd-15-2619-2022, 2022
Short summary
Short summary
Our study introduces FETCH3, a ready-to-use, open-access model that simulates the water fluxes across the soil, roots, and stem. To test the model capabilities, we tested it against exact solutions and a case study. The model presented considerably small errors when compared to the exact solutions and was able to correctly represent transpiration patterns when compared to experimental data. The results show that FETCH3 can correctly simulate above- and below-ground water transport.
Stephanie G. Stettz, Nicholas C. Parazoo, A. Anthony Bloom, Peter D. Blanken, David R. Bowling, Sean P. Burns, Cédric Bacour, Fabienne Maignan, Brett Raczka, Alexander J. Norton, Ian Baker, Mathew Williams, Mingjie Shi, Yongguang Zhang, and Bo Qiu
Biogeosciences, 19, 541–558, https://doi.org/10.5194/bg-19-541-2022, https://doi.org/10.5194/bg-19-541-2022, 2022
Short summary
Short summary
Uncertainty in the response of photosynthesis to temperature poses a major challenge to predicting the response of forests to climate change. In this paper, we study how photosynthesis in a mountainous evergreen forest is limited by temperature. This study highlights that cold temperature is a key factor that controls spring photosynthesis. Including the cold-temperature limitation in an ecosystem model improved its ability to simulate spring photosynthesis.
Yujie Wang, Philipp Köhler, Liyin He, Russell Doughty, Renato K. Braghiere, Jeffrey D. Wood, and Christian Frankenberg
Geosci. Model Dev., 14, 6741–6763, https://doi.org/10.5194/gmd-14-6741-2021, https://doi.org/10.5194/gmd-14-6741-2021, 2021
Short summary
Short summary
We present the first step in testing a new land model as part of a new Earth system model. Our model links plant hydraulics, stomatal optimization theory, and a comprehensive canopy radiation scheme. We compared model-predicted carbon and water fluxes to flux tower observations and model-predicted sun-induced chlorophyll fluorescence to satellite retrievals. Our model quantitatively predicted the carbon and water fluxes as well as the canopy fluorescence yield.
Jina Jeong, Jonathan Barichivich, Philippe Peylin, Vanessa Haverd, Matthew Joseph McGrath, Nicolas Vuichard, Michael Neil Evans, Flurin Babst, and Sebastiaan Luyssaert
Geosci. Model Dev., 14, 5891–5913, https://doi.org/10.5194/gmd-14-5891-2021, https://doi.org/10.5194/gmd-14-5891-2021, 2021
Short summary
Short summary
We have proposed and evaluated the use of four benchmarks that leverage tree-ring width observations to provide more nuanced verification targets for land-surface models (LSMs), which currently lack a long-term benchmark for forest ecosystem functioning. Using relatively unbiased European biomass network datasets, we identify the extent to which presumed biases in the much larger International Tree-Ring Data Bank might degrade the validation of LSMs.
Kyle B. Delwiche, Sara Helen Knox, Avni Malhotra, Etienne Fluet-Chouinard, Gavin McNicol, Sarah Feron, Zutao Ouyang, Dario Papale, Carlo Trotta, Eleonora Canfora, You-Wei Cheah, Danielle Christianson, Ma. Carmelita R. Alberto, Pavel Alekseychik, Mika Aurela, Dennis Baldocchi, Sheel Bansal, David P. Billesbach, Gil Bohrer, Rosvel Bracho, Nina Buchmann, David I. Campbell, Gerardo Celis, Jiquan Chen, Weinan Chen, Housen Chu, Higo J. Dalmagro, Sigrid Dengel, Ankur R. Desai, Matteo Detto, Han Dolman, Elke Eichelmann, Eugenie Euskirchen, Daniela Famulari, Kathrin Fuchs, Mathias Goeckede, Sébastien Gogo, Mangaliso J. Gondwe, Jordan P. Goodrich, Pia Gottschalk, Scott L. Graham, Martin Heimann, Manuel Helbig, Carole Helfter, Kyle S. Hemes, Takashi Hirano, David Hollinger, Lukas Hörtnagl, Hiroki Iwata, Adrien Jacotot, Gerald Jurasinski, Minseok Kang, Kuno Kasak, John King, Janina Klatt, Franziska Koebsch, Ken W. Krauss, Derrick Y. F. Lai, Annalea Lohila, Ivan Mammarella, Luca Belelli Marchesini, Giovanni Manca, Jaclyn Hatala Matthes, Trofim Maximov, Lutz Merbold, Bhaskar Mitra, Timothy H. Morin, Eiko Nemitz, Mats B. Nilsson, Shuli Niu, Walter C. Oechel, Patricia Y. Oikawa, Keisuke Ono, Matthias Peichl, Olli Peltola, Michele L. Reba, Andrew D. Richardson, William Riley, Benjamin R. K. Runkle, Youngryel Ryu, Torsten Sachs, Ayaka Sakabe, Camilo Rey Sanchez, Edward A. Schuur, Karina V. R. Schäfer, Oliver Sonnentag, Jed P. Sparks, Ellen Stuart-Haëntjens, Cove Sturtevant, Ryan C. Sullivan, Daphne J. Szutu, Jonathan E. Thom, Margaret S. Torn, Eeva-Stiina Tuittila, Jessica Turner, Masahito Ueyama, Alex C. Valach, Rodrigo Vargas, Andrej Varlagin, Alma Vazquez-Lule, Joseph G. Verfaillie, Timo Vesala, George L. Vourlitis, Eric J. Ward, Christian Wille, Georg Wohlfahrt, Guan Xhuan Wong, Zhen Zhang, Donatella Zona, Lisamarie Windham-Myers, Benjamin Poulter, and Robert B. Jackson
Earth Syst. Sci. Data, 13, 3607–3689, https://doi.org/10.5194/essd-13-3607-2021, https://doi.org/10.5194/essd-13-3607-2021, 2021
Short summary
Short summary
Methane is an important greenhouse gas, yet we lack knowledge about its global emissions and drivers. We present FLUXNET-CH4, a new global collection of methane measurements and a critical resource for the research community. We use FLUXNET-CH4 data to quantify the seasonality of methane emissions from freshwater wetlands, finding that methane seasonality varies strongly with latitude. Our new database and analysis will improve wetland model accuracy and inform greenhouse gas budgets.
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos P. M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugénie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, André Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Hölttä, Friso Holwerda, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Anders Lindroth, Pilar Llorens, Álvaro López-Bernal, Michael M. Loranty, Dietmar Lüttschwager, Cate Macinnis-Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez-Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, and Jordi Martínez-Vilalta
Earth Syst. Sci. Data, 13, 2607–2649, https://doi.org/10.5194/essd-13-2607-2021, https://doi.org/10.5194/essd-13-2607-2021, 2021
Short summary
Short summary
Transpiration is a key component of global water balance, but it is poorly constrained from available observations. We present SAPFLUXNET, the first global database of tree-level transpiration from sap flow measurements, containing 202 datasets and covering a wide range of ecological conditions. SAPFLUXNET and its accompanying R software package
sapfluxnetrwill facilitate new data syntheses on the ecological factors driving water use and drought responses of trees and forests.
William R. Wieder, Derek Pierson, Stevan Earl, Kate Lajtha, Sara G. Baer, Ford Ballantyne, Asmeret Asefaw Berhe, Sharon A. Billings, Laurel M. Brigham, Stephany S. Chacon, Jennifer Fraterrigo, Serita D. Frey, Katerina Georgiou, Marie-Anne de Graaff, A. Stuart Grandy, Melannie D. Hartman, Sarah E. Hobbie, Chris Johnson, Jason Kaye, Emily Kyker-Snowman, Marcy E. Litvak, Michelle C. Mack, Avni Malhotra, Jessica A. M. Moore, Knute Nadelhoffer, Craig Rasmussen, Whendee L. Silver, Benjamin N. Sulman, Xanthe Walker, and Samantha Weintraub
Earth Syst. Sci. Data, 13, 1843–1854, https://doi.org/10.5194/essd-13-1843-2021, https://doi.org/10.5194/essd-13-1843-2021, 2021
Short summary
Short summary
Data collected from research networks present opportunities to test theories and develop models about factors responsible for the long-term persistence and vulnerability of soil organic matter (SOM). Here we present the SOils DAta Harmonization database (SoDaH), a flexible database designed to harmonize diverse SOM datasets from multiple research networks.
Genevieve Rose Lorenzo, Paola Angela Bañaga, Maria Obiminda Cambaliza, Melliza Templonuevo Cruz, Mojtaba AzadiAghdam, Avelino Arellano, Grace Betito, Rachel Braun, Andrea F. Corral, Hossein Dadashazar, Eva-Lou Edwards, Edwin Eloranta, Robert Holz, Gabrielle Leung, Lin Ma, Alexander B. MacDonald, Jeffrey S. Reid, James Bernard Simpas, Connor Stahl, Shane Marie Visaga, and Armin Sorooshian
Atmos. Chem. Phys., 21, 6155–6173, https://doi.org/10.5194/acp-21-6155-2021, https://doi.org/10.5194/acp-21-6155-2021, 2021
Short summary
Short summary
Firework emissions change the physicochemical and optical properties of water-soluble particles, which subsequently alters the background aerosol’s respirability, influence on surroundings, ability to uptake gases, and viability as cloud condensation nuclei (CCN). There was heavy aerosol loading due to fireworks in the boundary layer. The aerosol constituents were largely water-soluble and submicrometer in size due to both inorganic salts in firework materials and gas-to-particle conversion.
Jeff W. Atkins, Elizabeth Agee, Alexandra Barry, Kyla M. Dahlin, Kalyn Dorheim, Maxim S. Grigri, Lisa T. Haber, Laura J. Hickey, Aaron G. Kamoske, Kayla Mathes, Catherine McGuigan, Evan Paris, Stephanie C. Pennington, Carly Rodriguez, Autym Shafer, Alexey Shiklomanov, Jason Tallant, Christopher M. Gough, and Ben Bond-Lamberty
Earth Syst. Sci. Data, 13, 943–952, https://doi.org/10.5194/essd-13-943-2021, https://doi.org/10.5194/essd-13-943-2021, 2021
Short summary
Short summary
The fortedata R package is an open data notebook from the Forest Resilience Threshold Experiment (FoRTE) – a modeling and manipulative field experiment that tests the effects of disturbance severity and disturbance type on carbon cycling dynamics in a temperate forest. The data included help to interpret how carbon cycling processes respond over time to disturbance.
Benjamin Gaubert, Louisa K. Emmons, Kevin Raeder, Simone Tilmes, Kazuyuki Miyazaki, Avelino F. Arellano Jr., Nellie Elguindi, Claire Granier, Wenfu Tang, Jérôme Barré, Helen M. Worden, Rebecca R. Buchholz, David P. Edwards, Philipp Franke, Jeffrey L. Anderson, Marielle Saunois, Jason Schroeder, Jung-Hun Woo, Isobel J. Simpson, Donald R. Blake, Simone Meinardi, Paul O. Wennberg, John Crounse, Alex Teng, Michelle Kim, Russell R. Dickerson, Hao He, Xinrong Ren, Sally E. Pusede, and Glenn S. Diskin
Atmos. Chem. Phys., 20, 14617–14647, https://doi.org/10.5194/acp-20-14617-2020, https://doi.org/10.5194/acp-20-14617-2020, 2020
Short summary
Short summary
This study investigates carbon monoxide pollution in East Asia during spring using a numerical model, satellite remote sensing, and aircraft measurements. We found an underestimation of emission sources. Correcting the emission bias can improve air quality forecasting of carbon monoxide and other species including ozone. Results also suggest that controlling VOC and CO emissions, in addition to widespread NOx controls, can improve ozone pollution over East Asia.
Natasha MacBean, Russell L. Scott, Joel A. Biederman, Catherine Ottlé, Nicolas Vuichard, Agnès Ducharne, Thomas Kolb, Sabina Dore, Marcy Litvak, and David J. P. Moore
Hydrol. Earth Syst. Sci., 24, 5203–5230, https://doi.org/10.5194/hess-24-5203-2020, https://doi.org/10.5194/hess-24-5203-2020, 2020
Rui Cheng, Troy S. Magney, Debsunder Dutta, David R. Bowling, Barry A. Logan, Sean P. Burns, Peter D. Blanken, Katja Grossmann, Sophia Lopez, Andrew D. Richardson, Jochen Stutz, and Christian Frankenberg
Biogeosciences, 17, 4523–4544, https://doi.org/10.5194/bg-17-4523-2020, https://doi.org/10.5194/bg-17-4523-2020, 2020
Short summary
Short summary
We measured reflected sunlight from an evergreen canopy for a year to detect changes in pigments that play an important role in regulating the seasonality of photosynthesis. Results show a strong mechanistic link between spectral reflectance features and pigment content, which is validated using a biophysical model. Our results show spectrally where, why, and when spectral features change over the course of the season and show promise for estimating photosynthesis remotely.
Wenfu Tang, Benjamin Gaubert, Louisa Emmons, Yonghoon Choi, Joshua P. DiGangi, Glenn S. Diskin, Xiaomei Xu, Cenlin He, Helen Worden, Simone Tilmes, Rebecca Buchholz, Hannah S. Halliday, and Avelino F. Arellano
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2020-864, https://doi.org/10.5194/acp-2020-864, 2020
Revised manuscript not accepted
Short summary
Short summary
A specific demonstration of the potential use of correlative information from carbon monoxide to refine estimates of regional carbon dioxide emissions from fossil fuel combustion.
Nicholas C. Parazoo, Troy Magney, Alex Norton, Brett Raczka, Cédric Bacour, Fabienne Maignan, Ian Baker, Yongguang Zhang, Bo Qiu, Mingjie Shi, Natasha MacBean, Dave R. Bowling, Sean P. Burns, Peter D. Blanken, Jochen Stutz, Katja Grossmann, and Christian Frankenberg
Biogeosciences, 17, 3733–3755, https://doi.org/10.5194/bg-17-3733-2020, https://doi.org/10.5194/bg-17-3733-2020, 2020
Short summary
Short summary
Satellite measurements of solar-induced chlorophyll fluorescence (SIF) provide a global measure of photosynthetic change. This enables scientists to better track carbon cycle responses to environmental change and tune biochemical processes in vegetation models for an improved simulation of future change. We use tower-instrumented SIF measurements and controlled model experiments to assess the state of the art in terrestrial biosphere SIF modeling and find a wide range of sensitivities to light.
Christopher P. O. Reyer, Ramiro Silveyra Gonzalez, Klara Dolos, Florian Hartig, Ylva Hauf, Matthias Noack, Petra Lasch-Born, Thomas Rötzer, Hans Pretzsch, Henning Meesenburg, Stefan Fleck, Markus Wagner, Andreas Bolte, Tanja G. M. Sanders, Pasi Kolari, Annikki Mäkelä, Timo Vesala, Ivan Mammarella, Jukka Pumpanen, Alessio Collalti, Carlo Trotta, Giorgio Matteucci, Ettore D'Andrea, Lenka Foltýnová, Jan Krejza, Andreas Ibrom, Kim Pilegaard, Denis Loustau, Jean-Marc Bonnefond, Paul Berbigier, Delphine Picart, Sébastien Lafont, Michael Dietze, David Cameron, Massimo Vieno, Hanqin Tian, Alicia Palacios-Orueta, Victor Cicuendez, Laura Recuero, Klaus Wiese, Matthias Büchner, Stefan Lange, Jan Volkholz, Hyungjun Kim, Joanna A. Horemans, Friedrich Bohn, Jörg Steinkamp, Alexander Chikalanov, Graham P. Weedon, Justin Sheffield, Flurin Babst, Iliusi Vega del Valle, Felicitas Suckow, Simon Martel, Mats Mahnken, Martin Gutsch, and Katja Frieler
Earth Syst. Sci. Data, 12, 1295–1320, https://doi.org/10.5194/essd-12-1295-2020, https://doi.org/10.5194/essd-12-1295-2020, 2020
Short summary
Short summary
Process-based vegetation models are widely used to predict local and global ecosystem dynamics and climate change impacts. Due to their complexity, they require careful parameterization and evaluation to ensure that projections are accurate and reliable. The PROFOUND Database provides a wide range of empirical data to calibrate and evaluate vegetation models that simulate climate impacts at the forest stand scale to support systematic model intercomparisons and model development in Europe.
Camilo Rey-Sanchez, Gil Bohrer, Julie Slater, Yueh-Fen Li, Roger Grau-Andrés, Yushan Hao, Virginia I. Rich, and G. Matt Davies
Biogeosciences, 16, 3207–3231, https://doi.org/10.5194/bg-16-3207-2019, https://doi.org/10.5194/bg-16-3207-2019, 2019
Short summary
Short summary
It is estimated that natural wetlands emit approximately 30 % of all the methane released to the atmosphere; yet these estimates are highly uncertain due to the complexity of biological, chemical, and physical processes controlling methane emissions. In this study, we explore how some of these key processes drive methane emissions in a temperate peat bog. We show that the composition of microbial methane cyclers in the upper portion of the peat drives the velocity of methane release to the air.
Junyi Liang, Gangsheng Wang, Daniel M. Ricciuto, Lianhong Gu, Paul J. Hanson, Jeffrey D. Wood, and Melanie A. Mayes
Geosci. Model Dev., 12, 1601–1612, https://doi.org/10.5194/gmd-12-1601-2019, https://doi.org/10.5194/gmd-12-1601-2019, 2019
Short summary
Short summary
Soil respiration, the second largest carbon fluxes between the atmosphere and land, is not well represented in global land models. In this study, using long-term observations at a temperate forest, we identified a solution for using better soil water potential simulations to improve predictions of soil respiration in the E3SM land model. In addition, parameter calibration further improved model performance.
Wenfu Tang, Avelino F. Arellano, Benjamin Gaubert, Kazuyuki Miyazaki, and Helen M. Worden
Atmos. Chem. Phys., 19, 4269–4288, https://doi.org/10.5194/acp-19-4269-2019, https://doi.org/10.5194/acp-19-4269-2019, 2019
Mingjie Shi, Joshua B. Fisher, Richard P. Phillips, and Edward R. Brzostek
Biogeosciences, 16, 457–465, https://doi.org/10.5194/bg-16-457-2019, https://doi.org/10.5194/bg-16-457-2019, 2019
Short summary
Short summary
The ability of plants to slow climate change by taking up carbon hinges in part on there being ample soil nitrogen. We used a model that accounts for the carbon cost to plants of supporting nitrogen-acquiring microbes to explore how nitrogen limitation affects climate. Our model predicted that nitrogen limitation will enhance temperature and decrease precipitation; thus, our results suggest that carbon spent to support nitrogen-acquiring microbes is a critical component of the Earth's climate.
Vladislav Bastrikov, Natasha MacBean, Cédric Bacour, Diego Santaren, Sylvain Kuppel, and Philippe Peylin
Geosci. Model Dev., 11, 4739–4754, https://doi.org/10.5194/gmd-11-4739-2018, https://doi.org/10.5194/gmd-11-4739-2018, 2018
Short summary
Short summary
In this study, we compare different methods for optimising parameters of the ORCHIDEE land surface model (LSM) using in situ observations. We use two minimisation methods - local gradient-based and global random search - applied either at each individual site or a group of sites characterised by one plant functional type. We demonstrate the advantages and challenges of different techniques and provide some advice on using it for the LSM parameters optimisation.
Umarporn Charusombat, Ayumi Fujisaki-Manome, Andrew D. Gronewold, Brent M. Lofgren, Eric J. Anderson, Peter D. Blanken, Christopher Spence, John D. Lenters, Chuliang Xiao, Lindsay E. Fitzpatrick, and Gregory Cutrell
Hydrol. Earth Syst. Sci., 22, 5559–5578, https://doi.org/10.5194/hess-22-5559-2018, https://doi.org/10.5194/hess-22-5559-2018, 2018
Short summary
Short summary
The authors evaluated several algorithms of heat loss and evaporation simulation by comparing with direct measurements at four offshore flux towers in the North American Great Lakes. The algorithms reproduced the seasonal cycle of heat loss and evaporation reasonably, but some algorithms significantly overestimated them during fall to early winter. This was due to false assumption of roughness length scales for temperature and humidity and was improved by employing a correct parameterization.
Wenfu Tang, Avelino F. Arellano, Joshua P. DiGangi, Yonghoon Choi, Glenn S. Diskin, Anna Agustí-Panareda, Mark Parrington, Sebastien Massart, Benjamin Gaubert, Youngjae Lee, Danbi Kim, Jinsang Jung, Jinkyu Hong, Je-Woo Hong, Yugo Kanaya, Mindo Lee, Ryan M. Stauffer, Anne M. Thompson, James H. Flynn, and Jung-Hun Woo
Atmos. Chem. Phys., 18, 11007–11030, https://doi.org/10.5194/acp-18-11007-2018, https://doi.org/10.5194/acp-18-11007-2018, 2018
David P. Edwards, Helen M. Worden, Doreen Neil, Gene Francis, Tim Valle, and Avelino F. Arellano Jr.
Atmos. Meas. Tech., 11, 1061–1085, https://doi.org/10.5194/amt-11-1061-2018, https://doi.org/10.5194/amt-11-1061-2018, 2018
Short summary
Short summary
The CHRONOS space mission would provide observations for emissions and transport studies of the highly uncertain air pollutants carbon monoxide and methane, with sub-hourly revisit at fine horizontal spatial resolution across North America. CHRONOS uses an imaging gas filter correlation radiometer hosted in geostationary orbit. CHRONOS' capability for monitoring evolving, or unanticipated, air pollution sources would find societal applications for air quality management and forecasting.
Wei Li, Natasha MacBean, Philippe Ciais, Pierre Defourny, Céline Lamarche, Sophie Bontemps, Richard A. Houghton, and Shushi Peng
Earth Syst. Sci. Data, 10, 219–234, https://doi.org/10.5194/essd-10-219-2018, https://doi.org/10.5194/essd-10-219-2018, 2018
Short summary
Short summary
We evaluated the land cover changes based on plant functional types (PFTs) derived from the newly released annual ESA land cover maps. We addressed the geographical distributions and temporal trends of the translated PFT maps and compared with other datasets commonly used by the land surface model community. Different choices of these datasets for the applications in land surface models are proposed depending on the research purposes.
Jennifer R. Marlon, Neil Pederson, Connor Nolan, Simon Goring, Bryan Shuman, Ann Robertson, Robert Booth, Patrick J. Bartlein, Melissa A. Berke, Michael Clifford, Edward Cook, Ann Dieffenbacher-Krall, Michael C. Dietze, Amy Hessl, J. Bradford Hubeny, Stephen T. Jackson, Jeremiah Marsicek, Jason McLachlan, Cary J. Mock, David J. P. Moore, Jonathan Nichols, Dorothy Peteet, Kevin Schaefer, Valerie Trouet, Charles Umbanhowar, John W. Williams, and Zicheng Yu
Clim. Past, 13, 1355–1379, https://doi.org/10.5194/cp-13-1355-2017, https://doi.org/10.5194/cp-13-1355-2017, 2017
Short summary
Short summary
To improve our understanding of paleoclimate in the northeastern (NE) US, we compiled data from pollen, tree rings, lake levels, testate amoeba from bogs, and other proxies from the last 3000 years. The paleoclimate synthesis supports long-term cooling until the 1800s and reveals an abrupt transition from wet to dry conditions around 550–750 CE. Evidence suggests the region is now becoming warmer and wetter, but more calibrated data are needed, especially to capture multidecadal variability.
Zhe Jiang, Helen Worden, John R. Worden, Daven K. Henze, Dylan B. A. Jones, Avelino F. Arellano, Emily V. Fischer, Liye Zhu, Kazuyuki Miyazaki, K. Folkert Boersma, and Vivienne H. Payne
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2017-382, https://doi.org/10.5194/acp-2017-382, 2017
Preprint withdrawn
Short summary
Short summary
We investigated the variation of US tropospheric NO2 in the past decade. We demonstrated significant divergence between the time variation in tropospheric NO2 columns from OMI retrievals and surface measurements. Our analysis suggests limited contributions from local effects such as fossil fuel emissions, lightning, or instrument artifacts, and indicates possible important contributions from long-range transport of Asian emissions that are modulated by ENSO.
Zhe Jiang, John R. Worden, Helen Worden, Merritt Deeter, Dylan B. A. Jones, Avelino F. Arellano, and Daven K. Henze
Atmos. Chem. Phys., 17, 4565–4583, https://doi.org/10.5194/acp-17-4565-2017, https://doi.org/10.5194/acp-17-4565-2017, 2017
Short summary
Short summary
We constrain the long-term variation in global CO emissions for 2001–2015. Our results confirm that the decreasing trend of tropospheric CO in the Northern Hemisphere is due to decreasing CO emissions from anthropogenic and biomass burning sources. In particular, we find decreasing CO emissions from the United States and China in the past 15 years, unchanged anthropogenic CO emissions from Europe since 2008, and likely a positive trend from India and southeast Asia.
Natasha MacBean, Philippe Peylin, Frédéric Chevallier, Marko Scholze, and Gregor Schürmann
Geosci. Model Dev., 9, 3569–3588, https://doi.org/10.5194/gmd-9-3569-2016, https://doi.org/10.5194/gmd-9-3569-2016, 2016
Short summary
Short summary
Model projections of the response of the terrestrial biosphere to anthropogenic emissions are uncertain, in part due to unknown fixed parameters in a model. Data assimilation can address this by using observations to optimise these parameter values. Using multiple types of data is beneficial for constraining different model processes, but it can also pose challenges in a DA context. This paper demonstrates and discusses the issues involved using toy models and examples from existing literature.
N. MacBean, F. Maignan, P. Peylin, C. Bacour, F.-M. Bréon, and P. Ciais
Biogeosciences, 12, 7185–7208, https://doi.org/10.5194/bg-12-7185-2015, https://doi.org/10.5194/bg-12-7185-2015, 2015
Short summary
Short summary
Previous model evaluation studies have shown that terrestrial biosphere models (TBMs) need a better representation of the leaf phenology, but the model deficiency could be related to incorrect model parameters or inaccurate model structure. This paper presents a framework for optimising the parameters of phenology models that are commonly used in TBMs. It further demonstrates that the optimisation can result in changes to trends in vegetation productivity and an improvement in gross C fluxes.
B. Poulter, N. MacBean, A. Hartley, I. Khlystova, O. Arino, R. Betts, S. Bontemps, M. Boettcher, C. Brockmann, P. Defourny, S. Hagemann, M. Herold, G. Kirches, C. Lamarche, D. Lederer, C. Ottlé, M. Peters, and P. Peylin
Geosci. Model Dev., 8, 2315–2328, https://doi.org/10.5194/gmd-8-2315-2015, https://doi.org/10.5194/gmd-8-2315-2015, 2015
Short summary
Short summary
Land cover is an essential variable in earth system models and determines conditions driving biogeochemical, energy and water exchange between ecosystems and the atmosphere. A methodology is presented for mapping plant functional types used in global vegetation models from a updated land cover classification system and open-source conversion tool, resulting from a consultative process among map producers and modelers engaged in the European Space Agency’s Land Cover Climate Change Initiative.
K. D. Maurer, G. Bohrer, W. T. Kenny, and V. Y. Ivanov
Biogeosciences, 12, 2533–2548, https://doi.org/10.5194/bg-12-2533-2015, https://doi.org/10.5194/bg-12-2533-2015, 2015
Short summary
Short summary
We used large-eddy simulations to test the sensitivity of roughness parameters to characteristics of canopy structure. We found that displacement height scaled with maximum canopy height, aerodynamic canopy height with maximum canopy height and leaf area index, and eddy-penetration depth with gap fraction. Using a decade of observations, we found that fixed parameterizations of roughness performed well but that empirical approaches that incorporated canopy structure preformed even better.
B. Bond-Lamberty, J. P. Fisk, J. A. Holm, V. Bailey, G. Bohrer, and C. M. Gough
Biogeosciences, 12, 513–526, https://doi.org/10.5194/bg-12-513-2015, https://doi.org/10.5194/bg-12-513-2015, 2015
Short summary
Short summary
How will aging forests behave as they undergo ecological transitions? Can our models, which support scientific, policy, and management analyses, accurately simulate these transitions? We tested whether three forest ecosystem models could reproduce dynamics observed in an experimentally manipulated forest in northern Michigan, USA. None of the models fully captured the post-disturbance C fluxes observed, raising doubts about their ability to simulate tree death after moderate disturbances.
S. C. Pryor, K. E. Hornsby, and K. A. Novick
Atmos. Chem. Phys., 14, 11985–11996, https://doi.org/10.5194/acp-14-11985-2014, https://doi.org/10.5194/acp-14-11985-2014, 2014
Short summary
Short summary
What role do forests play in determining the concentration (and composition) of climate-relevant aerosol particles? This study seeks to address two aspects of this question. Firstly, we document high in-canopy removal of recently formed particles. Then we show evidence that growth rates of particles are a function of soil water availability via a reduction in canopy emissions of gases responsible for particle growth to climate-relevant sizes during drought conditions.
M. Verma, M. A. Friedl, A. D. Richardson, G. Kiely, A. Cescatti, B. E. Law, G. Wohlfahrt, B. Gielen, O. Roupsard, E. J. Moors, P. Toscano, F. P. Vaccari, D. Gianelle, G. Bohrer, A. Varlagin, N. Buchmann, E. van Gorsel, L. Montagnani, and P. Propastin
Biogeosciences, 11, 2185–2200, https://doi.org/10.5194/bg-11-2185-2014, https://doi.org/10.5194/bg-11-2185-2014, 2014
Z. Shi, M. L. Thomey, W. Mowll, M. Litvak, N. A. Brunsell, S. L. Collins, W. T. Pockman, M. D. Smith, A. K. Knapp, and Y. Luo
Biogeosciences, 11, 621–633, https://doi.org/10.5194/bg-11-621-2014, https://doi.org/10.5194/bg-11-621-2014, 2014
P. C. Stoy, M. C. Dietze, A. D. Richardson, R. Vargas, A. G. Barr, R. S. Anderson, M. A. Arain, I. T. Baker, T. A. Black, J. M. Chen, R. B. Cook, C. M. Gough, R. F. Grant, D. Y. Hollinger, R. C. Izaurralde, C. J. Kucharik, P. Lafleur, B. E. Law, S. Liu, E. Lokupitiya, Y. Luo, J. W. Munger, C. Peng, B. Poulter, D. T. Price, D. M. Ricciuto, W. J. Riley, A. K. Sahoo, K. Schaefer, C. R. Schwalm, H. Tian, H. Verbeeck, and E. Weng
Biogeosciences, 10, 6893–6909, https://doi.org/10.5194/bg-10-6893-2013, https://doi.org/10.5194/bg-10-6893-2013, 2013
G. Lasslop, M. Migliavacca, G. Bohrer, M. Reichstein, M. Bahn, A. Ibrom, C. Jacobs, P. Kolari, D. Papale, T. Vesala, G. Wohlfahrt, and A. Cescatti
Biogeosciences, 9, 5243–5259, https://doi.org/10.5194/bg-9-5243-2012, https://doi.org/10.5194/bg-9-5243-2012, 2012
Related subject area
Biogeosciences
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water, and nitrogen perturbations
A novel Eulerian model based on central moments to simulate age and reactivity continua interacting with mixing processes
Dynamic ecosystem assembly and escaping the “fire-trap” in the tropics: Insights from FATES_15.0.0
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
A global behavioural model of human fire use and management: WHAM! v1.0
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): calibration-free calculations of water and energy fluxes
biospheremetrics v1.0.1: An R package to calculate two complementary terrestrial biosphere integrity indicators: human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO, and NH3 emissions from enhanced rock weathering with croplands
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
In-silico calculation of soil pH by SCEPTER v1.0
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
Modeling of non-structural carbohydrate dynamics by the spatially explicit individual-based dynamic global vegetation model SEIB-DGVM (SEIB-DGVM-NSC version 1.0)
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: Simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
MEDFATE 2.9.3: a trait-enabled model to simulate Mediterranean forest function and dynamics at regional scales
Modelling the role of livestock grazing in C and N cycling in grasslands with LPJmL5.0-grazing
Implementation of trait-based ozone plant sensitivity in the Yale Interactive terrestrial Biosphere model v1.0 to assess global vegetation damage
The Permafrost and Organic LayEr module for Forest Models (POLE-FM) 1.0
CompLaB v1.0: a scalable pore-scale model for flow, biogeochemistry, microbial metabolism, and biofilm dynamics
Validation of a new spatially explicit process-based model (HETEROFOR) to simulate structurally and compositionally complex forest stands in eastern North America
Global agricultural ammonia emissions simulated with the ORCHIDEE land surface model
ForamEcoGEnIE 2.0: incorporating symbiosis and spine traits into a trait-based global planktic foraminiferal model
FABM-NflexPD 2.0: testing an instantaneous acclimation approach for modeling the implications of phytoplankton eco-physiology for the carbon and nutrient cycles
Evaluating the vegetation–atmosphere coupling strength of ORCHIDEE land surface model (v7266)
Non-Redfieldian carbon model for the Baltic Sea (ERGOM version 1.2) – implementation and budget estimates
Implementation of a new crop phenology and irrigation scheme in the ISBA land surface model using SURFEX_v8.1
Simulating long-term responses of soil organic matter turnover to substrate stoichiometry by abstracting fast and small-scale microbial processes: the Soil Enzyme Steady Allocation Model (SESAM; v3.0)
Modeling demographic-driven vegetation dynamics and ecosystem biogeochemical cycling in NASA GISS's Earth system model (ModelE-BiomeE v.1.0)
Forest fluxes and mortality response to drought: model description (ORCHIDEE-CAN-NHA r7236) and evaluation at the Caxiuanã drought experiment
Matrix representation of lateral soil movements: scaling and calibrating CE-DYNAM (v2) at a continental level
CANOPS-GRB v1.0: a new Earth system model for simulating the evolution of ocean–atmosphere chemistry over geologic timescales
Low sensitivity of three terrestrial biosphere models to soil texture over the South American tropics
FESDIA (v1.0): exploring temporal variations of sediment biogeochemistry under the influence of flood events using numerical modelling
Impact of changes in climate and CO2 on the carbon storage potential of vegetation under limited water availability using SEIB-DGVM version 3.02
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
Short summary
Short summary
By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
Short summary
Short summary
Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
Short summary
Short summary
Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
Short summary
Short summary
Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
Short summary
Short summary
By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
Short summary
Short summary
Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
Short summary
Short summary
Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
Short summary
Short summary
To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
Short summary
Short summary
Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
Short summary
Short summary
Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
Short summary
Short summary
This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
Short summary
Short summary
Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
Short summary
Short summary
We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
Short summary
Short summary
Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles D. Koven, Ryan G. Knox, Lara M. Kueppers, and Chonggang Xu
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-191, https://doi.org/10.5194/gmd-2023-191, 2023
Preprint under review for GMD
Short summary
Short summary
We adapt a fire-behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
Short summary
Short summary
The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
Short summary
Short summary
We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James Millington
EGUsphere, https://doi.org/10.5194/egusphere-2023-2162, https://doi.org/10.5194/egusphere-2023-2162, 2023
Short summary
Short summary
Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
Short summary
Short summary
Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
Short summary
Short summary
We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
EGUsphere, https://doi.org/10.5194/egusphere-2023-1626, https://doi.org/10.5194/egusphere-2023-1626, 2023
Short summary
Short summary
Numerous estimations of water and energy balances heavily depend on empirical equations that necessitate site-specific calibration. This equifinality poses the risk of obtaining 'right answers for wrong reasons.' In this paper, we introduce novel formulations based on first-principles to calculate calibration-free quantities, such as net radiation, evapotranspiration, condensation, soil water content, surface runoff, subsurface lateral flow, and snow-water equivalent.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
EGUsphere, https://doi.org/10.5194/egusphere-2023-2503, https://doi.org/10.5194/egusphere-2023-2503, 2023
Short summary
Short summary
We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract >25 % of the potential pre-industrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of land, water, and fertilizer use, as well as climate change.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
Short summary
Short summary
Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
Short summary
Short summary
In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
Short summary
Short summary
Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
Short summary
Short summary
This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-137, https://doi.org/10.5194/gmd-2023-137, 2023
Revised manuscript accepted for GMD
Short summary
Short summary
Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater pH and bulk soil pH is thus crucial to accurate evaluation of alkalinity required to counteract soil acidification and resulting capture of anthropogenic carbon dioxide through the Enhanced Rock Weathering technique. This has been enabled by the updated reactive-transport SCEPTER code and newly developed framework to simulate soil pH.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
Short summary
Short summary
Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
Short summary
Short summary
Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
EGUsphere, https://doi.org/10.5194/egusphere-2023-1287, https://doi.org/10.5194/egusphere-2023-1287, 2023
Short summary
Short summary
We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predict their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that important questions related to plant-atmosphere interactions can be addressed, such as the effects of rising CO2 and ozone pollution on carbon uptake of the biosphere. The model has been well validated with both ground and satellite observations.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
Short summary
Short summary
Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
Jens Heinke, Susanne Rolinski, and Christoph Müller
Geosci. Model Dev., 16, 2455–2475, https://doi.org/10.5194/gmd-16-2455-2023, https://doi.org/10.5194/gmd-16-2455-2023, 2023
Short summary
Short summary
We develop a livestock module for the global vegetation model LPJmL5.0 to simulate the impact of grazing dairy cattle on carbon and nitrogen cycles in grasslands. A novelty of the approach is that it accounts for the effect of feed quality on feed uptake and feed utilization by animals. The portioning of dietary nitrogen into milk, feces, and urine shows very good agreement with estimates obtained from animal trials.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina M. Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander W. Cheesman, Yansen Xu, and Maria Carolina Duran Rojas
Geosci. Model Dev., 16, 2261–2276, https://doi.org/10.5194/gmd-16-2261-2023, https://doi.org/10.5194/gmd-16-2261-2023, 2023
Short summary
Short summary
Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained nor fully implemented in large-scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP, with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Winslow D. Hansen, Adrianna Foster, Benjamin Gaglioti, Rupert Seidl, and Werner Rammer
Geosci. Model Dev., 16, 2011–2036, https://doi.org/10.5194/gmd-16-2011-2023, https://doi.org/10.5194/gmd-16-2011-2023, 2023
Short summary
Short summary
Permafrost and the thick soil-surface organic layers that insulate permafrost are important controls of boreal forest dynamics and carbon cycling. However, both are rarely included in process-based vegetation models used to simulate future ecosystem trajectories. To address this challenge, we developed a computationally efficient permafrost and soil organic layer module that operates at fine spatial (1 ha) and temporal (daily) resolutions.
Heewon Jung, Hyun-Seob Song, and Christof Meile
Geosci. Model Dev., 16, 1683–1696, https://doi.org/10.5194/gmd-16-1683-2023, https://doi.org/10.5194/gmd-16-1683-2023, 2023
Short summary
Short summary
Microbial activity responsible for many chemical transformations depends on environmental conditions. These can vary locally, e.g., between poorly connected pores in porous media. We present a modeling framework that resolves such small spatial scales explicitly, accounts for feedback between transport and biogeochemical conditions, and can integrate state-of-the-art representations of microbes in a computationally efficient way, making it broadly applicable in science and engineering use cases.
Arthur Guignabert, Quentin Ponette, Frédéric André, Christian Messier, Philippe Nolet, and Mathieu Jonard
Geosci. Model Dev., 16, 1661–1682, https://doi.org/10.5194/gmd-16-1661-2023, https://doi.org/10.5194/gmd-16-1661-2023, 2023
Short summary
Short summary
Spatially explicit and process-based models are useful to test innovative forestry practices under changing and uncertain conditions. However, their larger use is often limited by the restricted range of species and stand structures they can reliably account for. We therefore calibrated and evaluated such a model, HETEROFOR, for 23 species across southern Québec. Our results showed that the model is robust and can predict accurately both individual tree growth and stand dynamics in this region.
Maureen Beaudor, Nicolas Vuichard, Juliette Lathière, Nikolaos Evangeliou, Martin Van Damme, Lieven Clarisse, and Didier Hauglustaine
Geosci. Model Dev., 16, 1053–1081, https://doi.org/10.5194/gmd-16-1053-2023, https://doi.org/10.5194/gmd-16-1053-2023, 2023
Short summary
Short summary
Ammonia mainly comes from the agricultural sector, and its volatilization relies on environmental variables. Our approach aims at benefiting from an Earth system model framework to estimate it. By doing so, we represent a consistent spatial distribution of the emissions' response to environmental changes.
We greatly improved the seasonal cycle of emissions compared with previous work. In addition, our model includes natural soil emissions (that are rarely represented in modeling approaches).
Rui Ying, Fanny M. Monteiro, Jamie D. Wilson, and Daniela N. Schmidt
Geosci. Model Dev., 16, 813–832, https://doi.org/10.5194/gmd-16-813-2023, https://doi.org/10.5194/gmd-16-813-2023, 2023
Short summary
Short summary
Planktic foraminifera are marine-calcifying zooplankton; their shells are widely used to measure past temperature and productivity. We developed ForamEcoGEnIE 2.0 to simulate the four subgroups of this organism. We found that the relative abundance distribution agrees with marine sediment core-top data and that carbon export and biomass are close to sediment trap and plankton net observations respectively. This model provides the opportunity to study foraminiferal ecology in any geological era.
Onur Kerimoglu, Markus Pahlow, Prima Anugerahanti, and Sherwood Lan Smith
Geosci. Model Dev., 16, 95–108, https://doi.org/10.5194/gmd-16-95-2023, https://doi.org/10.5194/gmd-16-95-2023, 2023
Short summary
Short summary
In classical models that track the changes in the elemental composition of phytoplankton, additional state variables are required for each element resolved. In this study, we show how the behavior of such an explicit model can be approximated using an
instantaneous acclimationapproach, in which the elemental composition of the phytoplankton is assumed to adjust to an optimal value instantaneously. Through rigorous tests, we evaluate the consistency of this scheme.
Yuan Zhang, Devaraju Narayanappa, Philippe Ciais, Wei Li, Daniel Goll, Nicolas Vuichard, Martin G. De Kauwe, Laurent Li, and Fabienne Maignan
Geosci. Model Dev., 15, 9111–9125, https://doi.org/10.5194/gmd-15-9111-2022, https://doi.org/10.5194/gmd-15-9111-2022, 2022
Short summary
Short summary
There are a few studies to examine if current models correctly represented the complex processes of transpiration. Here, we use a coefficient Ω, which indicates if transpiration is mainly controlled by vegetation processes or by turbulence, to evaluate the ORCHIDEE model. We found a good performance of ORCHIDEE, but due to compensation of biases in different processes, we also identified how different factors control Ω and where the model is wrong. Our method is generic to evaluate other models.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
Short summary
Short summary
Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Arsène Druel, Simon Munier, Anthony Mucia, Clément Albergel, and Jean-Christophe Calvet
Geosci. Model Dev., 15, 8453–8471, https://doi.org/10.5194/gmd-15-8453-2022, https://doi.org/10.5194/gmd-15-8453-2022, 2022
Short summary
Short summary
Crop phenology and irrigation is implemented into a land surface model able to work at a global scale. A case study is presented over Nebraska (USA). Simulations with and without the new scheme are compared to different satellite-based observations. The model is able to produce a realistic yearly irrigation water amount. The irrigation scheme improves the simulated leaf area index, gross primary productivity, evapotransipiration, and land surface temperature.
Thomas Wutzler, Lin Yu, Marion Schrumpf, and Sönke Zaehle
Geosci. Model Dev., 15, 8377–8393, https://doi.org/10.5194/gmd-15-8377-2022, https://doi.org/10.5194/gmd-15-8377-2022, 2022
Short summary
Short summary
Soil microbes process soil organic matter and affect carbon storage and plant nutrition at the ecosystem scale. We hypothesized that decadal dynamics is constrained by the ratios of elements in litter inputs, microbes, and matter and that microbial community optimizes growth. This allowed the SESAM model to descibe decadal-term carbon sequestration in soils and other biogeochemical processes explicitly accounting for microbial processes but without its problematic fine-scale parameterization.
Ensheng Weng, Igor Aleinov, Ram Singh, Michael J. Puma, Sonali S. McDermid, Nancy Y. Kiang, Maxwell Kelley, Kevin Wilcox, Ray Dybzinski, Caroline E. Farrior, Stephen W. Pacala, and Benjamin I. Cook
Geosci. Model Dev., 15, 8153–8180, https://doi.org/10.5194/gmd-15-8153-2022, https://doi.org/10.5194/gmd-15-8153-2022, 2022
Short summary
Short summary
We develop a demographic vegetation model to improve the representation of terrestrial vegetation dynamics and ecosystem biogeochemical cycles in the Goddard Institute for Space Studies ModelE. The individual-based competition for light and soil resources makes the modeling of eco-evolutionary optimality possible. This model will enable ModelE to simulate long-term biogeophysical and biogeochemical feedbacks between the climate system and land ecosystems at decadal to centurial temporal scales.
Yitong Yao, Emilie Joetzjer, Philippe Ciais, Nicolas Viovy, Fabio Cresto Aleina, Jerome Chave, Lawren Sack, Megan Bartlett, Patrick Meir, Rosie Fisher, and Sebastiaan Luyssaert
Geosci. Model Dev., 15, 7809–7833, https://doi.org/10.5194/gmd-15-7809-2022, https://doi.org/10.5194/gmd-15-7809-2022, 2022
Short summary
Short summary
To facilitate more mechanistic modeling of drought effects on forest dynamics, our study implements a hydraulic module to simulate the vertical water flow, change in water storage and percentage loss of stem conductance (PLC). With the relationship between PLC and tree mortality, our model can successfully reproduce the large biomass drop observed under throughfall exclusion. Our hydraulic module provides promising avenues benefiting the prediction for mortality under future drought events.
Arthur Nicolaus Fendrich, Philippe Ciais, Emanuele Lugato, Marco Carozzi, Bertrand Guenet, Pasquale Borrelli, Victoria Naipal, Matthew McGrath, Philippe Martin, and Panos Panagos
Geosci. Model Dev., 15, 7835–7857, https://doi.org/10.5194/gmd-15-7835-2022, https://doi.org/10.5194/gmd-15-7835-2022, 2022
Short summary
Short summary
Currently, spatially explicit models for soil carbon stock can simulate the impacts of several changes. However, they do not incorporate the erosion, lateral transport, and deposition (ETD) of soil material. The present work developed ETD formulation, illustrated model calibration and validation for Europe, and presented the results for a depositional site. We expect that our work advances ETD models' description and facilitates their reproduction and incorporation in land surface models.
Kazumi Ozaki, Devon B. Cole, Christopher T. Reinhard, and Eiichi Tajika
Geosci. Model Dev., 15, 7593–7639, https://doi.org/10.5194/gmd-15-7593-2022, https://doi.org/10.5194/gmd-15-7593-2022, 2022
Short summary
Short summary
A new biogeochemical model (CANOPS-GRB v1.0) for assessing the redox stability and dynamics of the ocean–atmosphere system on geologic timescales has been developed. In this paper, we present a full description of the model and its performance. CANOPS-GRB is a useful tool for understanding the factors regulating atmospheric O2 level and has the potential to greatly refine our current understanding of Earth's oxygenation history.
Félicien Meunier, Wim Verbruggen, Hans Verbeeck, and Marc Peaucelle
Geosci. Model Dev., 15, 7573–7591, https://doi.org/10.5194/gmd-15-7573-2022, https://doi.org/10.5194/gmd-15-7573-2022, 2022
Short summary
Short summary
Drought stress occurs in plants when water supply (i.e. root water uptake) is lower than the water demand (i.e. atmospheric demand). It is strongly related to soil properties and expected to increase in intensity and frequency in the tropics due to climate change. In this study, we show that contrary to the expectations, state-of-the-art terrestrial biosphere models are mostly insensitive to soil texture and hence probably inadequate to reproduce in silico the plant water status in drying soils.
Stanley I. Nmor, Eric Viollier, Lucie Pastor, Bruno Lansard, Christophe Rabouille, and Karline Soetaert
Geosci. Model Dev., 15, 7325–7351, https://doi.org/10.5194/gmd-15-7325-2022, https://doi.org/10.5194/gmd-15-7325-2022, 2022
Short summary
Short summary
The coastal marine environment serves as a transition zone in the land–ocean continuum and is susceptible to episodic phenomena such as flash floods, which cause massive organic matter deposition. Here, we present a model of sediment early diagenesis that explicitly describes this type of deposition while also incorporating unique flood deposit characteristics. This model can be used to investigate the temporal evolution of marine sediments following abrupt changes in environmental conditions.
Shanlin Tong, Weiguang Wang, Jie Chen, Chong-Yu Xu, Hisashi Sato, and Guoqing Wang
Geosci. Model Dev., 15, 7075–7098, https://doi.org/10.5194/gmd-15-7075-2022, https://doi.org/10.5194/gmd-15-7075-2022, 2022
Short summary
Short summary
Plant carbon storage potential is central to moderate atmospheric CO2 concentration buildup and mitigation of climate change. There is an ongoing debate about the main driver of carbon storage. To reconcile this discrepancy, we use SEIB-DGVM to investigate the trend and response mechanism of carbon stock fractions among water limitation regions. Results show that the impact of CO2 and temperature on carbon stock depends on water limitation, offering a new perspective on carbon–water coupling.
Cited articles
Alexander, R. M., Rollinson, C. R., Babst, F., Trouet, V., and Moore, D. J. P.: Uncertainty in tree-ring based aboveground biomass estimates does not substantially alter growth-climate relationships, Trees-Struct. Funct., in review, 2017.
Asner, G. P., Scurlock, J. M., and Hicke, J. A.: Global synthesis of leaf area index observations: implications for ecological and remote sensing studies, Global Ecol. Biogeogr., 12, 191–205, 2003.
Atkin, O.: New Phytologist: bridging the `plant function–climate modelling divide', New Phytol., 209, 1329–1332, 2016.
Babst, F., Bouriaud, O., Papale, D., Gielen, B., Janssens, I. A., Nikinmaa, E., Ibrom, A., Wu, J., Bernhofer, C., Köstner, B., Grünwald, T., Seufert, G., Ciais, P., and Frank, D.: Above-ground woody carbon sequestration measured from tree rings is coherent with net ecosystem productivity at five eddy-covariance sites, New Phytol., 201, 1289–1303, 2014.
Baldocchi, D., Falge, E., Gu, L., Olson, R., Hollinger, D., Running, S., Anthoni, P., Bernhofer, C., Davis, K., Evans, R., Fuentes, J., Goldstein, A., Katul, G., Law, B., Lee, X., Malhi, Y., Meyers, T., Munger, W., Oechel, W., Paw, U. K. T., Pilegaard, K., Schmid, H. P., Valentini, R., Verma, S., Vesala, T., Wilson, K., and Wofsy, S.: FLUXNET: a new tool to study the temporal and spatial variability of ecosystem-scale carbon dioxide, water vapor, and energy flux densities, B. Am. Meteor. Soc., 82, 2415–2434, 2001.
Baldocchi, D., Ryu, Y., and Keenan, T.: Terrestrial Carbon Cycle Variability [version 1; referees: 2 approved] F1000Research 2016, 5(F1000 Faculty Rev):2371, https://doi.org/10.12688/f1000research.8962.1, 2016.
Blanken, P.: AmeriFlux US-NR1 Niwot Ridge Forest (LTER NWT1), https://doi.org/10.17190/AMF/1246088, 2016.
Bloom, A. A., Exbrayat, J. F., van der Velde, I. R., Feng, L., and Williams, M.: The decadal state of the terrestrial carbon cycle: global retrievals of terrestrial carbon allocation, pools, and residence times, P. Natl. Acad. Sci., 113, 1285–1290, 2016.
Boden, T. A., Krassovski, M., and Yang, B.: The AmeriFlux data activity and data system: an evolving collection of data management techniques, tools, products and services, Geosci. Instrum. Method. Data Syst., 2, 165–176, https://doi.org/10.5194/gi-2-165-2013, 2013.
Bonan, G. B.: Forests and climate change: forcings, feedbacks, and the climate benefits of forests, Science, 320, 1444–1449, 2008.
Bonan, G. B., Lawrence, P. J., Oleson, K. W., Levis, S., Jung, M., Reichstein, M., Lawrence, D. M., and Swenson, S. C.: Improving canopy processes in the Community Land Model version 4 (CLM4) using global flux fields empirically inferred from FLUXNET data, J. Geophys. Res., 116, G02014, https://doi.org/10.1029/2010JG001593, 2011.
Brown, S.: Measuring carbon in forests: current status and future challenges. Environ. Pollut., 116, 363–372, 2002.
Brown, S. L. and Schroeder, P. E.: Spatial patterns of aboveground production and moratlity of woody biomass for Eastern U.S. forests, Ecol. Appl., 9, 968–980, 1999.
Brzostek, E. R., Fisher, J. B., and Phillips, R. B.: Modeling the carbon cost of plant nitrogen acquisition: mycorrhizal trade-offs and multipath resistance uptake improve predictions of retranslocation, J. Geophys. Res.-Biogeosci., 119, 1684–1697, https://doi.org/10.1002/2014JG002660, 2014.
Brzostek, E. R., Rebel, K. T., Smith, K. R., and Phillips, R. P.: Integrating mycorrhizae into global scale models: a journey toward relevance in the Earth's climate system, in: Mycorrhizal mediation of soil: fertility, structure, and carbon storage, edited by: Johnson, N. C., Gehring, C., and Jansa, J., Elsevier, 479-499, 2017.
Caspersen, J. P., Pacala, S. W., Jenkins, J. C., Hurtt, G. C., Moorcroft, P. R., and Birdsey, R. A.: Contributions of land-use history to carbon accumulation in US forests, Science, 290, 1148–1151, 2000.
Chen, G., Yang, Y., and Robinson, D.: Allocation of gross primary production in forest ecosystems: allometric constraints and environmental responses, New Phytol., 200, 1176–1186, 2013.
Chen, M., Melaas, E. K., Gray, J. M., Friedl, M. A., and Richardson, A. D.: A new seasonal-deciduous spring phenology submodel in the Community Land Model 4.5: impacts on carbon and water cycling under future climate scenarios, Global Chang. Biol., 22, 3675–3688, 2016.
Chen, Y., Xia, J., Sun, Z., Li, J., Luo, Y., Gang, C., and Wang, Z.: The role of residence time in diagnostic models of global carbon storage capacity: model decomposition based on a traceable scheme, Sci. Rep., 5, 16155, https://doi.org/10.1038/srep16155, 2015.
Chojnacky, D. C., Heath, L. S., and Jenkins, J. C.: Updated generalized biomass equations for North American tree species, Forestry, 87, 129–151, 2014.
Cosgrove, B. A., Lohmann, D., Mitchell, K. E., Houser, P. R., Wood, E. F., Schaake, J. C., Robock, A., Sheffield, J., Duan, Q., Luo, L., Higging, R. W., Pinker, R. T., and Tarpley, J. D.: Land surface model spin-up behavior in the North American Land Data Assimilation System (NLDAS), J. Geophys. Res., 108, 8845, https://doi.org/10.1029/2002JD003316, 2003.
Cottam, G., Curtis, J. T., and Hale, B. W.: Some sampling characteristics of a population of randomly dispersed individuals, Ecology, 34, 741–757, 1953.
Curtis, P. S., Hanson, P. J., Bolstad, P., Barford, C., Randolph, J. C., Schmid, H. P., and Wilson, K. B.: Biometric and eddy-covariance based estimates of annual carbon storage in five eastern North American deciduous forests, Agr. Forest Meteorol., 113, 3–19, 2002.
De Kauwe, M. G., Medlyn, B. E., Zaehle, S., Walker, A. P., Dietze, M. C., Wang, Y.-P., Luo, Y., Jain, A. K., El-Masri, B., Hickler, T., Warlind, D., Weng, E., Parton, W. J., Thornton, P. E., Wang, S., Prentice, I. C., Asao, S., Smith, B., McCarthy, H. R., Iversen, C. M., Hanson, P. J., Warren, J. M., Oren, R., and Norby, R. J.: Where does the carbon go? A model-data intercomparison of vegetation carbon allocation and turnover processes at two temperate forest free-air CO2 enrichment sites, New Phytol., 203, 883–899, 2014.
Delbart, N., Ciais, P., Chave, J., Viovy, N., Malhi, Y., and Le Toan, T.: Mortality as a key driver of the spatial distribution of aboveground biomass in Amazonian forest: results from a dynamic vegetation model, Biogeosciences, 7, 3027–3039, https://doi.org/10.5194/bg-7-3027-2010, 2010.
Douglass, A. E.: Crossdating in dendrochronology, J. Forest., 39, 825–831, 1941.
Dybzinski, R., Farrior, C., Wolf, A., Reich, P. B., and Pacala, S. W.: Evolutionarily stable strategy carbon allocation to foliage, wood, and fine roots in trees competing light and nitrogen: an analytically tractable, individual-based model and quantitative comparisons to data, Am. Nat., 177, 153–166, 2011.
Dye, A., Barker Plotkin, A., Bishop, D., Pederson, N., Poulter, B., and Hessl, A.: Comparing tree-ring and permanent plot estimates of aboveground net primary production in three eastern U.S. forests, Ecosphere, 7, e01454, https://doi.org/10.1002/ecs2.1454, 2016.
Erb, K.-E., Fetzel, T., Plutzar, C., Kastner, T., Lauk, C., Mayer, A., Niedertscheider, M., Körner, C., and Haber, H.: Biomass turnover time in terrestrial ecosystems halved by land use, Nat. Geosci., 9, 674–678, 2016.
Fisher, R. A., Muszala, S., Verteinstein, M., Lawrence, P., Xu, C., McDowell, N. G., Knox, R. G., Koven, C., Holm, J., Rogers, B. M., Spessa, A., Lawrence, D., and Bonan, G.: Taking off the training wheels: the properties of a dynamic vegetation model without climate envelopes, CLM4.5(ED), Geosci. Model Dev., 8, 3593–3619, https://doi.org/10.5194/gmd-8-3593-2015, 2015.
Friend, A. D., Arneth, A., Kiang, N. Y., Lomas, M., Ogée, J., Rödenbeck, C., Running, S. W., Santaren, J.-D., Sitch, S., Viovy, N., Woodward, F. I., and Zaehle, S.: FLUXNET and modeling the global carbon cycle, Glob. Change Biol., 13, 610–633, 2007.
Friend, A. D., Lucht, W., Rademacher, T. T., Keribin, R., Betts, R., Cadule, P., Ciais, P., Clark, D. B., Dankers, R., Falloon, P. D., Ito, A., Kahana, R., Kleidon, A., Lomas, M. R., Nishina, K., Ostberg, S., Pavlick, R., Peylin, P., Schaphoff, S., Vuichard, N., Warszawski, L., Wiltshire, A., and Woodward, F. I.: Carbon residence time dominates uncertainty in terrestrial vegetation responses to future climate and atmospheric CO2, P. Natl. Acad. Sci., 111, 3280–3285, 2014.
Gifford, R. M.: Plant respiration in productivity models: conceptualisation, representation, and issues for global-terrestrial carbon-cycle research, Funct. Plant Biol., 30, 171–186, 2003.
Gill, A. I. and Finzi, A. C.: Belowground carbon flux links biogeochemical cycles and resource-use efficiency at the global scale, Ecol. Lett., 19, 1419–1428, 2016.
Gough, C. M., Flower, C., Volgel, C. S., Dragoni, D., and Curtis, P. S.: Whole ecosystem labile carbon production in a north temperate deciduous forest, Agr. Forest Meteorol., 149, 1531–1540, 2009.
Gough, C. M., Hardiman, B. S., Nave, L. E., Bohrer, G., Maurer, K. D., Vogel, C. S., Nadelhoffer, K. J., and Curtis, P. S.: Sustained carbon uptake and storage following moderate disturbance in a Greta Lakes forest, Ecol. Appl., 23, 1202–1215, 2013.
Gough, C. M., Bohrer, G., and Curtis, P. S.: AmeriFlux US-UMB University of Michigan Biological Station, https://doi.org/10.17190/AMF/1246107, 2016.
Gower, S. T., Krankina, O., Olson, R. J., Apps, M., Linder, S., and Wang, C.: Net primary production and carbon allocation patterns of boreal forests ecosystems, Ecol. Appl., 11, 1395–1411, 2001.
Grissino-Mayer, H. D.: Evaluating crossdating accuracy: a manual and tutorial for the computer program COFECHA, Tree-Ring Res., 57, 205–221, 2001.
Guillemot, J., Martin-StPaul, N. K., Dufrêne, E., François, C., Soudani, K., Ourcival, J. M., and Delpierre, N.: The dynamic of the annual carbon allocation to wood in European tree species is consistent with a combined source–sink limitation of growth: implications for modelling, Biogeosciences, 12, 2773–2790, https://doi.org/10.5194/bg-12-2773-2015, 2015.
Hickler, T., Rammig, A., and Werner, C.: Modelling CO2 impacts on forest productivity, Current Forestry Reports, 1, 69–80, 2015.
Hollinger, D.: AmeriFlux US-Ho1 Howland Forest (main tower), http://ameriflux.lbl.gov/doi/AmeriFlux/US-Ho1, 2016.
Holmes, R. L.: Computer-assisted quality control in tree-ring dating and measurement, Tree-Ring Bull., 43, 69–78, 1983.
Houghton, R. A.: Aboveground forest biomass and the global carbon balance, Glob. Change Biol., 11, 945–958, 2005.
Hudiburg, T. W., Law, B. E., and Thornton, P. E.: Evaluation and improvement of the Community Land Model (CLM4) in Oregon forests, Biogeosciences, 10, 453–470, https://doi.org/10.5194/bg-10-453-2013, 2013.
Ise, T., Litton, C. M., Giardina, C. P., and Ito, A.: Comparison of modeling approaches for carbon partitioning: impact on estimates of global net primary production and equilibrium biomass of woody vegetation from MODIS GPP, J. Geophys. Res., 115, G04025, https://doi.org/10.1029/2010JG001326, 2010.
Iversen, C. M., McCormack, M. L., Powell, A. S., Blackwood, C. B., Freschet, G. T., Kattge, J., Roumet, C., Stover, D. B., Soudzilovskaia, N. A., Valverde-Berrantes, O. J., van Bodegom, P. M., and Violle, C.: A global fine-root ecology database to address below-ground challenges in plant ecology, New Phytol., 215, 15–26, https://doi.org/10.1111/nph.14486, 2017.
Jenkins, J. C., Chojnacky, D. C., Heath, L. S., and Birdsey, R. A.: Comprehensive database of diameter-based biomass regressions for North American tree species, US Department of Agriculture, Forest Service, Newtown Square, PA, available at: https://www.fs.fed.us/ne/durham/4104/papers/ne_gtr319_jenkins_and_others.pdf, 2004.
Kay, J. E., Deser, C., Phillips, A., Mai, A., Hannay, C., Strand, G., Arblaster, J. M., Bates, S. C., Danabasoglu, G., Edwards, J., Holland, M., Kushner, P., Lamarque, J.-F., Lawrence, D., Lindsay, K., Middleton, A., Munoz, E., Neale, R., Oleson, K., Polvani, L., and Vertenstein, M.: The Community Earth System Model (CESM) large ensemble project, A community resource for studying climate change in the presence of internal climate variability, B. Am. Meteor. Soc., 96, 1333–1349, 2015.
Keith, H., Mackey, B. G., and Lindenmayer, D. B.: Re-evaluation of forest biomass carbon stocks and lessons from the world's most carbon-dense forests, P. Natl. Acad. Sci., 106, 11635–11640, 2009.
Klesse, S., Etzold, S., and Frank, D.: Integrating tree-ring and inventory-based measurements of aboveground biomass growth: research opportunities and carbon cycle consequences from a large snow breakage event in the Swiss Alps, Eur. J. For. Res., 135, 297–311, 2016.
Koven, C. D., Chambers, J. Q., Georgiou, K., Knox, R., Negron-Juarez, R., Riley, W. J., Arora, V. K., Brovkin, V., Friedlingstein, P., and Jones, C. D.: Controls on terrestrial carbon feedbacks by productivity versus turnover in the CMIP5 Earth System Models, Biogeosciences, 12, 5211–5228, https://doi.org/10.5194/bg-12-5211-2015, 2015.
Lawrence, D. M., Oleson, K. W., Flanner, M. G., Thornton, P. E., Swenson, S. C., Lawrence, P. J., Zeng, X., Yang, Z.-L., Levis, S., Sakaguchi, K., Bonan, G. B., and Slater, A. G.: Parametrization improvements and functional and structural advances in version 4 of the Community Land Model, J. Adv. Model. Earth Syst., 3, M03001, https://doi.org/10.1029/2011MS000045, 2011.
Le Quéré, C., Raupach, M. R., Canadell, J. G., Marland, G., Bopp, L., Ciais, P., Conway, T. J., Doney, S. C., Feely, R. A., Foster, P., Friedlingstein, P., Gurney, K., Houghton, R. A., House, J. I., Huntingford, C., Levy, P. E., Lomas, M. R., Majkut, J., Metzl, N., Ometto, J. P., Peters, G. P., Prentice, I. C., Randerson, J. T., Running, S. W., Sarmiento, J. L., Schuster, U., Sitch, S., Takahashi, T., Viovy, N., van der Werf, G., and Woodward, F. I.: Trends in the sources and sinks of carbon dioxide, Nat. Geosci., 2, 831–836, 2009.
Li, H., Luo, L., Wood, E. F., and Schaake, J.: The role of initial conditions and forcing uncertainties in seasonal hydrologic forecasting, J. Geophys. Res., 114, D04114, https://doi.org/10.1029/2008JD010969, 2009.
Litton, C. M., Raich, J. W., and Ryan, M. G.: Carbon allocation in forest ecosystems, Glob. Change Biol., 13, 2089–2109, 2007.
Litvak, M. E.: AmeriFlux US-Vcm Valles Caldera Mixed Conifer, https://doi.org/10.17190/AMF/1246121, 2016.
Luyssaert, S., Inglima, I., Jung, M., Richardson, A. D., Reichstein, M., Papale, D., Piao, S. L., Schulze, E.-D., Wingate, L., Matteucci G., Aragao, L., Aubinet, M., Beer, C., Bernhofer, C., Black, K. G., Bonal, D., Bonnefond, J.-M., Chambers, J., Ciais, P., Cook, B., Davis, K. J., Dolman, A. J., Gielen B., Goulden, M., Grace, J., Granier, A., Grelle, A., Griffis, T., Grünwald, T., Guidolotti, G., Hanson, P. J., Harding, R., Hollinger, D. Y., Hutyra, L. R., Kolari, P., Kruijt, B., Kutsch, W., Lagergren, F., Laurila, T., Law, B. E., Le Maire, G., Lindroth, A., Loustau, D., Malhi, Y., Mateus, J., Migliavacca, M., Misson, L., Montagnani, L., Moncrieff, J., Moors, E., Munger, J. W., Nikinmaa, E., Ollinger, S. V., Pita, G., Rebmann, C., Roupsard, O., Saigusa, N., Sanz, M.-J., Seufert, G., Sierra, C., Smith, M.-L., Tang, J., Valentini, R., Vesala, T., and Janssens, I. A.: CO2 balance of boreal, temperate, and tropical forests derived from a global database, Glob. Change Biol., 13, 2509–2537, 2007.
Mahecha, M. D., Reichstein, M., Jung, M., Seneviratne, S. I., Zaehle, S., Beer, C., Braakhekke, M. C., Carvalhais, N., Lange, H., Le Maire, G., and Moors, E.: Comparing observations and process-based simulations of biosphere-atmosphere exchanges on multiple timescales, J. Geophys. Res., 115, G02003, https://doi.org/10.1029/2009JG001016, 2010.
Malhi, Y., Meir, P., and Brown, S.: Forests, carbon and global climate, Philos. T. Roy. Soc. A, 360, 1567–1591, 2002.
Malhi, Y., Doughty, C., and Galbraith, D.: The allocation of net primary productivity in tropical forests, Philos. T. Roy. Soc. B, 366, 3225–3245, 2011.
Mao, J., Thornton, P. E., Shi, X., Zhao, M., and Post, W. M.: Remote sensing evaluation of CLM4 GPP for the period 2000 to 2009, J. Climate, 25, 5327–5342, 2012.
Mao, J., Shi, X., Thornton, P. E., Hoffman, F. M., Zhu, Z., Ranga, B., and Myneni, R. B.: Global latitudinal-asymmetric vegetation growth trends and their driving mechanisms: 1982–2009, Remote Sens., 5, 1484–1497, 2013.
Masek, J. G., Huang, C., Wolfe, R., Cohen, W., Hall, F., Kutler, J., and Nelson, P.: North American forest disturbance mapped from a decadal Landsat record, Remote Sens. Environ., 112, 2914–2926, 2008.
Megonigal, J. P., Conner, W. H., Kroegger, S., and Sharitz, R. R.: Aboveground production in southeastern floodplain forests: a test of the subsidy-stress hyphothesis, Ecology, 78, 370–384, 1997.
Munger, J. W.: AmeriFlux US-Ha1 Harvard Forest EMS Tower (HFR1), https://doi.org/10.17190/AMF/1246059, 2016.
Nadelhoffer, K. J. and Raich, J. W.: Fine root production estimates and belowground carbon allocation in forest ecosystems, Ecology, 73, 1139–1147, 1992.
Negron-Juarez, R., Koven, C.D., Riley, W. J., Knox, R. G., and Chambers, J. Q.: Observed allocations of productivity and biomass, and turnover times in tropical forests are not accurately represented in CMIP5 Earth system models, Environ. Res. Lett., 10, 064017, https://doi.org/10.1088/1748-9326/10/6/064017, 2015.
Newman, G. S., Arthur, M. A., and Muller, R. N.: Above- and belowground net primary production in a temperate mixed deciduous forest, Ecosystems, 9, 317–329, 2006.
Novick, K. A. and Phillips, R.: AmeriFlux US-MMS Morgan Monroe State Forest, https://doi.org/10.17190/AMF/1246080, 2016.
Oishi, C., Novick, K. A., and Stoy, P.: AmeriFlux US-Dk2 Duke Forest-hardwoods, https://doi.org/10.17190/AMF/1246047, 2016.
Oleson, K., Lawrence, D. M., Bonan, G. B., Drewniak, B., Huang, M., Koven, C. D., Levis, S., Li, F., Riley, W. J., Subin, Z. M., Swenson, S. C., Thornton, P. E., Bozbiyik, A., Fisher, R., Heald, C. L., Kluzek, E., Lamarque, J.-F., Lawrence, P. J., Leung, L. R., Lipscomb, W., Muszala, S., Ricciuto, D. M., Sacks, W., Sun, Y., Tang, J., and Yang, Z.-L.: Technical Description of version 4.5 of the Community Land Model (CLM), NCAR Technical Note NCAR/TN-503+STR, Boulder, Colorado, 420 pp., 2013.
Pan, Y., Birdsey, R. A., Fang, J., Houghton, R., Kauppi, P. E., Kurz, W. A., Phillips, O. L., Shvidenko, A., Lewis, S. L., Canadell, J. G., Ciais, P., Jackson, R. B., Pacala, S. W., McGuire, A. D., Piao, S., Rautiainen, A., and Hayes, D.: A large and persistent carbon sink in the world's forests, Science, 333, 988–993, 2011.
Phillips, R. P., Ibáñez, I., D'Orangeville, L., Hanson, P. J., Ryan, M. G., and McDowell, N. G.: A belowground prespective on the drought sensitivity of forests: towards improved understanding and simulation, Forest Ecol. Manag., 380, 309–320, 2016.
Piao, S. L., Ito, A., Li, S. G., Huang, Y., Ciais, P., Wang, X. H., Peng, S. S., Nan, H. J., Zhao, C., Ahlström, A., Andres, R. J., Chevallier, F., Fang, J. Y., Hartmann, J., Huntingford, C., Jeong, S., Levis, S., Levy, P. E., Li, J. S., Lomas, M. R., Mao, J. F., Mayorga, E., Mohammat, A., Muraoka, H., Peng, C. H., Peylin, P., Poulter, B., Shen, Z. H., Shi, X., Sitch, S., Tao, S., Tian, H. Q., Wu, X. P., Xu, M., Yu, G. R., Viovy, N., Zaehle, S., Zeng, N., and Zhu, B.: The carbon budget of terrestrial ecosystems in East Asia over the last two decades, Biogeosciences, 9, 3571–3586, https://doi.org/10.5194/bg-9-3571-2012, 2012.
Randerson, J. T., Hoffman, F., Thornton, P. E., Mahowald, N. M., Lindsay, K., Lee, Y.-H., Nevison, C. D., Doney, S. C., Bonan, G., Stöckli, R., Covey, C., Running, S. W., and Fung, I. Y.: Systematic assessment of terrestrial biogeochemistry in coupled climate-carbon models, Glob. Change Biol., 15, 2462–2484, 2009.
Reichstein, M., Falge, E., Baldocchi, D., Papale, D., Aubinet, M., Berbigier, P., Bernhofer, C., Buchmann, N., Gilmanov, T., Granier, A., Grünwald, T., Havránková, K., Ilvesniemi, H., Janous, D., Knohl, A., Laurila, T., Lohila, A., Loustau, D., Matteucci, G., Meyers, T., Miglietta, F., Ourcival, J.-F., Pumpanen, J., Rambal, S., Rotenberg, E., Sanz, M., Tenhunen, J., Seufert, G., Vaccari, F., Vesala, T., Yakir, D., and Valentini, R.: On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm, Glob. Change Biol., 11, 1424–1439, 2005.
Richardson, A. D., Williams, M., Hollinger, D. Y., Moore, D. J. P., Dail, D. B., Davidson, E. A., Scott, N. A., Evans, R. S., Hughes, H., Lee, J. T., Rodrigues, C., and Savage, K.: Estimating parameters of a forest ecosystem C model with measurements of stocks and fluxes as joint constraints, Oecologia, 164, 25–40, 2010.
Rodell, M., Houser, P. R., Berg, A. A., and Famiglietti, J. S.: Evaluation of 10 methods for initializing a land surface model, J. Hydrometeorol., 6, 146–155, 2005.
Runkle, J. R.: Changes in Southern Appalachian canopy tree gaps sampled thrice, Ecology, 79, 1768–1780, 1998.
Schulze, E.-D., Wirth, C., and Heimann, M.: Managing forests after Kyoto, Science, 289, 2058–2059, 2000.
Sevanto, S. and Dickman, L. T.: Where does the carbon go? – Plant carbon allocation under climate change, Tree Physiol., 35, 581–584, 2015.
Shi, M., Fisher, J. B., Brzostek, E. R., and Phillips, R. P: Carbon cost of plant nitrogen acquisition: global carbon cycle impact from an improved plant nitrogen cycle in the Community Land Model, Glob. Change Biol., 22, 1299–1314, 2016.
Shi, X., Mao, J., Thornton, P. E., and Huang, M.: Spatiotemporal patterns of evapotranspiration in response to multiple environmental factors simulated by the Community Land Model, Environ. Res. Lett., 8, 024012, https://doi.org/10.1088/1748-9326/8/2/024012, 2013.
Sierra, C. A., Müller, M., Metzler, H., Manzoni, S., and Trumbore, S. E.: The muddle of ages, turnover, transit, and residence times in the carbon cycle, Glob. Change Biol., 23, 1763–1773, 2017.
Song, X., Zeng, X.-D., and Li, F.: Evaluation of the individual allocation scheme and its impacts in a dynamic global vegetation model, Atmos. Ocean. Sci. Lett., 9, 38–44, 2016.
Stearns, F. W.: Ninety years change in a northern hardwood forest in Wisconsin, Ecology, 30, 350–358, 1949.
Stokes, M. A. and Smiley, T. L.: An introduction to tree-ring dating. University of Chicago Press, Chicago, Illinois, USA, 1968.
Stoy, P., Oishi, C., and Novick., K. A.: AmeriFlux US-Dk3 Dule Forest – loblolly pine, https://doi.org/10.17190/AMF/1246048, 2016.
Thornton, P. E. and Zimmerman, N. E.: An improved canopy integration scheme for a Land Surface Model with prognostic canopy structure, J. Climate, 20, 3902–3923, 2007.
Thum, T., MacBean, N., Peylin, P., Bacour, C., Santaren, D., Longdoz, B., Loustau, D., and Ciais, P.: The potential benefit of using forest biomass data in addition to carbon and water flux measurements to constrain ecosystem model parameters: case studies at two temperate forest sites, Agr. Forest Meteorol., 234, 48–65, 2017.
Thurner, M., Beer, C., Ciais, P., Friend, A. D., Ito, A., Kleidon, A., Lomas, M. R., Quegan, S., Rademacher, T. T., Schaphoff, S., Tum, M., Wiltshire, A., and Carvalhais, N.: Evaluation of climate-related carbon turnover processes in global vegetation models for boreal and temperate forests, Glob. Change Biol., 23, 3076–3091, https://doi.org/10.1111/gcb.13660, 2017.
Tilman, D.: Plant strategies and the dynamics and structure of plant communities. Monographs in Population Biology 26, Princeton University Press, Princeton, New Jersey, USA, 1988.
van Mantgem, P., Stephenson, N. L., Byrne, J. C., Daniels, L. D., Franklin, J. F., Fulé, P. Z., Harmon, M. E., Larson, A. J., Smith, J. M., Taylor, A. H., and Veblen, T. T.: Widespread increase of tree mortality rates in the western United States, Science, 323, 521–524, 2009.
Waring, R. H., Landsberg, J. J., and Williams, M.: Net primary production of forests: a constant fraction of gross primary production?, Tree Physiol., 18, 129–134, 1998.
Warren, J. M., Hanson, P. J., Iversen, C. M., Kumar, J., Walker, A. P., and Wullschleger, S. D.: Root structural and functional dynamics in terrestrial biosphere models – evaluation and recommendations, New Phytol., 205, 59–78, 2015.
Weng, E., Farrior, C. E., Dybzinski, R., and Pacala, S. W.: Predicting vegetation type through physiological and environmental interactions with leaf traits: evergreen and deciduous forests in an earth system modeling framework, Glob. Change Biol., 23, 2482–2498, https://doi.org/10.1111/gcb.13542, 2016.
Wolf, A., Field, C. B., and Berry, J. A.: Allometric growth and allocation in forests: a perspective from FLUXNET, Ecol. Appl., 21, 1546–1556, 2011.
Wood, J. D. and Gu, L.: AmeriFlux US-MOz Missouri Ozark site, https://doi.org/10.17190/AMF/1246081, 2016.
Xia, J., Chen, Y., Liang, S., Liu, D., and Yuan, W.: Global simulations of carbon allocation coefficients for deciduous vegetation types, Tellus B, 67, 28016, https://doi.org/10.3402/tellusb.v67.28016, 2015.
Xia, J. Y., Luo, Y. Q., Wang, Y.-P., Weng, E. S., and Hararuk, O.: A semi-analytical solution to accelerate spin-up of a coupled carbon and nitrogen land model to steady state, Geosci. Model Dev., 5, 1259–1271, https://doi.org/10.5194/gmd-5-1259-2012, 2012.
Yang, Z.-L., Dickinson, R. E., Henderson-Sellers, A., and Pitman, A. J.: Preliminary study of spin-up processes in land surface models with the first stage data of Project for Intercomparison of Land Surface Parameterization Schemes Phase 1(a), J. Geophys. Res., 100, 16553–16578, 1995.
Zaehle, S. and Friend, A. D.: Carbon and nitrogen cycle dynamics in the O-CN land surface model: 1. Model description, site-scale evaluation, and sensitivity to parameter estimates, Global Biogeochem. Cy., 24, GB1005, https://doi.org/10.1029/2009GB003521, 2010.
Short summary
How carbon is allocated to different plant tissues (leaves, stem, and roots) determines carbon residence time and thus remains a central challenge for understanding the global carbon cycle. In this paper, we compared standard and novel carbon allocation schemes in CLM4.5 and evaluated them using eddy covariance wood and leaf biomass. The dynamic scheme based on work by Litton improved model performance, but this was dependent on model assumptions about woody turnover.
How carbon is allocated to different plant tissues (leaves, stem, and roots) determines carbon...
