Articles | Volume 10, issue 1
Geosci. Model Dev., 10, 189–222, 2017
https://doi.org/10.5194/gmd-10-189-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue: Coupled chemistry–meteorology modelling: status and...
Geosci. Model Dev., 10, 189–222, 2017
https://doi.org/10.5194/gmd-10-189-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper 13 Jan 2017
Model description paper | 13 Jan 2017
The Brazilian developments on the Regional Atmospheric Modeling System (BRAMS 5.2): an integrated environmental model tuned for tropical areas
Saulo R. Freitas et al.
Related authors
Saulo R. Freitas, Georg A. Grell, and Haiqin Li
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-38, https://doi.org/10.5194/gmd-2020-38, 2020
Revised manuscript under review for GMD
Short summary
Short summary
Convection Parameterization is a component of atmospheric models aiming to represent the statistical effects of sub-grid scale convective clouds. Because the atmosphere contains circulations with a broad spectrum of scales, the truncation needed to run models in computers requires the introduction of parameterizations to account for processes that are not explicitly resolved. We detail recent developments in the Grell-Freitas CP, which has been applied in several regional and global models.
Fernando Santos, Karla Longo, Alex Guenther, Saewung Kim, Dasa Gu, Dave Oram, Grant Forster, James Lee, James Hopkins, Joel Brito, and Saulo Freitas
Atmos. Chem. Phys., 18, 12715–12734, https://doi.org/10.5194/acp-18-12715-2018, https://doi.org/10.5194/acp-18-12715-2018, 2018
Short summary
Short summary
We investigated the impact of biomass burning on the chemical composition of trace gases in the Amazon. The findings corroborate the influence of biomass burning activity not only on direct emissions of particulate matter but also on the oxidative capacity to produce secondary organic aerosol. The scientists plan to use this information to improve the numerical model simulation with a better representativeness of the chemical processes, which can impact on global climate prediction.
Paulo R. Teixeira, Saulo R. de Freitas, Francis W. Correia, and Antonio O. Manzi
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2018-81, https://doi.org/10.5194/gmd-2018-81, 2018
Publication in GMD not foreseen
Short summary
Short summary
Emissions of gases and particulates in urban areas are associated with a mixture of various sources, both natural and anthropogenic. Understanding and quantifying these emissions is necessary in studies of climate change, local air pollution issues, and weather modification. This work will also contribute to improved air quality numerical simulations, provide more accurate scenarios for policymakers and regulatory agencies to develop strategies for controlling the vehicular emissions.
Demerval S. Moreira, Karla M. Longo, Saulo R. Freitas, Marcia A. Yamasoe, Lina M. Mercado, Nilton E. Rosário, Emauel Gloor, Rosane S. M. Viana, John B. Miller, Luciana V. Gatti, Kenia T. Wiedemann, Lucas K. G. Domingues, and Caio C. S. Correia
Atmos. Chem. Phys., 17, 14785–14810, https://doi.org/10.5194/acp-17-14785-2017, https://doi.org/10.5194/acp-17-14785-2017, 2017
Short summary
Short summary
Fire in the Amazon forest produces a large amount of smoke that is released into the atmosphere and covers a large portion of South America for about 3 months each year. The smoke affects the energy and CO2 budgets. Using a numerical atmospheric model, we demonstrated that the smoke changes the forest from a source to a sink of CO2 to the atmosphere. The smoke ultimately acts to at least partially compensate for the forest carbon lost due to fire emissions.
Madeleine Sánchez Gácita, Karla M. Longo, Julliana L. M. Freire, Saulo R. Freitas, and Scot T. Martin
Atmos. Chem. Phys., 17, 2373–2392, https://doi.org/10.5194/acp-17-2373-2017, https://doi.org/10.5194/acp-17-2373-2017, 2017
Short summary
Short summary
This study uses an adiabatic cloud model to simulate the activation of smoke aerosol particles in the Amazon region as cloud condensation nuclei (CCN). The relative importance of variability in hygroscopicity, mixing state, and activation kinetics for the activated fraction and maximum supersaturation is assessed. Our findings on uncertainties and sensitivities provide guidance on appropriate simplifications that can be used for modeling of smoke aerosols within general circulation models.
Carolin Walter, Saulo R. Freitas, Christoph Kottmeier, Isabel Kraut, Daniel Rieger, Heike Vogel, and Bernhard Vogel
Atmos. Chem. Phys., 16, 9201–9219, https://doi.org/10.5194/acp-16-9201-2016, https://doi.org/10.5194/acp-16-9201-2016, 2016
Short summary
Short summary
Buoyancy produced by vegetation fires can lead to substantial plume rise with consequences for the dispersion of aerosol emitted by the fires. To study this effect a 1-D plume rise model was included into the regional online integrated model system COSMO-ART. Comparing model results and satellite data for a case study of 2010 Canadian wildfires shows, that the plume rise model outperforms prescribed emission height. The radiative impact of the aerosol leads to a pronounced temperature change.
Gabriel Pereira, Ricardo Siqueira, Nilton E. Rosário, Karla L. Longo, Saulo R. Freitas, Francielle S. Cardozo, Johannes W. Kaiser, and Martin J. Wooster
Atmos. Chem. Phys., 16, 6961–6975, https://doi.org/10.5194/acp-16-6961-2016, https://doi.org/10.5194/acp-16-6961-2016, 2016
Short summary
Short summary
Fires associated with land use and land cover changes release large amounts of aerosols and trace gases into the atmosphere. Although several inventories of biomass burning emissions cover Brazil, there are still considerable uncertainties and differences among them. However, results indicate that emission derived via similar methods tend to agree with one other, but aerosol emissions from fires with particularly high biomass consumption still lead to an underestimation.
R. Paugam, M. Wooster, S. Freitas, and M. Val Martin
Atmos. Chem. Phys., 16, 907–925, https://doi.org/10.5194/acp-16-907-2016, https://doi.org/10.5194/acp-16-907-2016, 2016
Short summary
Short summary
Landscape fire plume height controls fire emissions release in the atmosphere, in particular their transport that may also affect the longevity, chemical conversion, and fate of the plumes chemical constituents. Here, we review how such landscape-scale fire smoke plume injection heights are represented in large-scale atmospheric transport models aiming to represent the impacts of wildfire emissions on component of the Earth system.
R. Paugam, M. Wooster, J. Atherton, S. R. Freitas, M. G. Schultz, and J. W. Kaiser
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acpd-15-9815-2015, https://doi.org/10.5194/acpd-15-9815-2015, 2015
Revised manuscript not accepted
Short summary
Short summary
The transport of Biomass Burning emissions in Chemical Transport Model rely on parametrization of plumes injection height. Using fire observation selected to ensure match-up of fire-atmosphere-plume dynamics; a popular plume rise model was improved and optimized. The resulting model shows response to the effect of atmospheric stability consistent with previous findings and is able to predict higher injection height than any other tested parametrizations, giving a closer match with observation.
S. Archer-Nicholls, D. Lowe, E. Darbyshire, W. T. Morgan, M. M. Bela, G. Pereira, J. Trembath, J. W. Kaiser, K. M. Longo, S. R. Freitas, H. Coe, and G. McFiggans
Geosci. Model Dev., 8, 549–577, https://doi.org/10.5194/gmd-8-549-2015, https://doi.org/10.5194/gmd-8-549-2015, 2015
Short summary
Short summary
The regional WRF-Chem model was used to study aerosol particles from biomass burning in South America. The modelled estimates of fire plume injection heights were found to be too high, with serious implications for modelled aerosol vertical distribution, transport and impacts on local climate. A modified emission scenario was developed which improved the predicted injection height. Model results were compared and evaluated against in situ measurements from the 2012 SAMBBA flight campaign.
M. M. Bela, K. M. Longo, S. R. Freitas, D. S. Moreira, V. Beck, S. C. Wofsy, C. Gerbig, K. Wiedemann, M. O. Andreae, and P. Artaxo
Atmos. Chem. Phys., 15, 757–782, https://doi.org/10.5194/acp-15-757-2015, https://doi.org/10.5194/acp-15-757-2015, 2015
Short summary
Short summary
In the Amazon Basin, gases that lead to the formation of ozone (O3), an air pollutant and greenhouse gas, are emitted from fire, urban and biogenic sources. This study presents the first basin wide aircraft measurements of O3 during the dry-to-wet and wet-to-dry transition seasons, which show extremely low values above undisturbed forest and increases from fires. This work also demonstrates the capabilities and limitations of regional atmospheric chemistry models in representing O3 in Amazonia.
J. Brito, L. V. Rizzo, W. T. Morgan, H. Coe, B. Johnson, J. Haywood, K. Longo, S. Freitas, M. O. Andreae, and P. Artaxo
Atmos. Chem. Phys., 14, 12069–12083, https://doi.org/10.5194/acp-14-12069-2014, https://doi.org/10.5194/acp-14-12069-2014, 2014
Short summary
Short summary
This paper details the physical--chemical characteristics of aerosols in a region strongly impacted by biomass burning in the western part of the Brazilian Amazon region. For such, a large suite of state-of-the-art instruments for realtime analysis was deployed at a ground site. Among the key findings, we observe the strong prevalence of organic aerosols associated to fire emissions, with important climate effects, and indications of its very fast processing in the atmosphere.
G. A. Grell and S. R. Freitas
Atmos. Chem. Phys., 14, 5233–5250, https://doi.org/10.5194/acp-14-5233-2014, https://doi.org/10.5194/acp-14-5233-2014, 2014
A. F. dos Santos, S. R. Freitas, J. G. Z. de Mattos, H. F. de Campos Velho, M. A. Gan, E. F. P. da Luz, and G. A. Grell
Adv. Geosci., 35, 123–136, https://doi.org/10.5194/adgeo-35-123-2013, https://doi.org/10.5194/adgeo-35-123-2013, 2013
K. M. Longo, S. R. Freitas, M. Pirre, V. Marécal, L. F. Rodrigues, J. Panetta, M. F. Alonso, N. E. Rosário, D. S. Moreira, M. S. Gácita, J. Arteta, R. Fonseca, R. Stockler, D. M. Katsurayama, A. Fazenda, and M. Bela
Geosci. Model Dev., 6, 1389–1405, https://doi.org/10.5194/gmd-6-1389-2013, https://doi.org/10.5194/gmd-6-1389-2013, 2013
D. S. Moreira, S. R. Freitas, J. P. Bonatti, L. M. Mercado, N. M. É. Rosário, K. M. Longo, J. B. Miller, M. Gloor, and L. V. Gatti
Geosci. Model Dev., 6, 1243–1259, https://doi.org/10.5194/gmd-6-1243-2013, https://doi.org/10.5194/gmd-6-1243-2013, 2013
V. Beck, C. Gerbig, T. Koch, M. M. Bela, K. M. Longo, S. R. Freitas, J. O. Kaplan, C. Prigent, P. Bergamaschi, and M. Heimann
Atmos. Chem. Phys., 13, 7961–7982, https://doi.org/10.5194/acp-13-7961-2013, https://doi.org/10.5194/acp-13-7961-2013, 2013
M. Stuefer, S. R. Freitas, G. Grell, P. Webley, S. Peckham, S. A. McKeen, and S. D. Egan
Geosci. Model Dev., 6, 457–468, https://doi.org/10.5194/gmd-6-457-2013, https://doi.org/10.5194/gmd-6-457-2013, 2013
N. E. Rosário, K. M. Longo, S. R. Freitas, M. A. Yamasoe, and R. M. Fonseca
Atmos. Chem. Phys., 13, 2923–2938, https://doi.org/10.5194/acp-13-2923-2013, https://doi.org/10.5194/acp-13-2923-2013, 2013
S. Strada, S. R. Freitas, C. Mari, K. M. Longo, and R. Paugam
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmdd-6-721-2013, https://doi.org/10.5194/gmdd-6-721-2013, 2013
Preprint withdrawn
Marcia Akemi Yamasoe, Nilton Manuel Évora Rosário, Samantha Novaes Santos Martins Almeida, and Martin Wild
Atmos. Chem. Phys., 21, 6593–6603, https://doi.org/10.5194/acp-21-6593-2021, https://doi.org/10.5194/acp-21-6593-2021, 2021
Short summary
Short summary
Spatio-temporal disparity to assess global dimming and brightening phenomena has been a critical topic. For instance, few studies addressed surface solar irradiation (SSR) long-term trend in South America. In this study, SSR, sunshine duration (SD) and the diurnal temperature range (DTR) are analysed for São Paulo, Brazil. We found a dimming phase, identified by SSR, SD and DTR, extending till 1983. Then, while SSR is still declining, consistent with cloud increasing, SD and DTR are increasing.
Sarah J. Doherty, Pablo E. Saide, Paquita Zuidema, Yohei Shinozuka, Gonzalo A. Ferrada, Hamish Gordon, Marc Mallet, Kerry Meyer, David Painemal, Steven G. Howell, Steffen Freitag, Amie Dobracki, James R. Podolske, Sharon P. Burton, Richard A. Ferrare, Calvin Howes, Pierre Nabat, Gregory R. Carmichael, Arlindo da Silva, Kristina Pistone, Ian Chang, Lan Gao, Robert Wood, and Jens Redemann
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2021-333, https://doi.org/10.5194/acp-2021-333, 2021
Preprint under review for ACP
Short summary
Short summary
Between July and October, biomass burning smoke is advected over the southeast Atlantic Ocean, leading to climate forcing. Model calculations of forcing by this plume vary significantly, in both magnitude and sign. This paper compares aerosol and cloud properties, observed during three NASA ORACLES field campaigns to the same in four models. It quantifies modeled biases in properties key to aerosol direct radiative forcing, and how these biases propagate to biases in forcing.
Xinxin Ye, Pargoal Arab, Ravan Ahmadov, Eric James, Georg A. Grell, Bradley Pierce, Aditya Kumar, Paul Makar, Jack Chen, Didier Davignon, Greg Carmichael, Gonzalo Ferrada, Jeff McQueen, Jianping Huang, Rajesh Kumar, Louisa Emmons, Farren L. Herron-Thorpe, Mark Parrington, Richard Engelen, Vincent-Henri Peuch, Arlindo da Silva, Amber Soja, Emily Gargulinski, Elizabeth Wiggins, Johnathan W. Hair, Marta Fenn, Taylor Shingler, Shobha Kondragunta, Alexei Lyapustin, Yujie Wang, Brent Holben, David Giles, and Pablo E. Saide
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2021-223, https://doi.org/10.5194/acp-2021-223, 2021
Preprint under review for ACP
Short summary
Short summary
Wildfire smoke has crucial impacts on air quality, while uncertainties in the numerical forecasts remain significant. We present an evaluation of twelve real-time forecasting systems. Comparison of predicted smoke emissions suggests a large spread in magnitudes with temporal patterns deviating from satellite detections. The performance for AOD and surface PM2.5 and their discrepancies highlighted the role of accurately represented spatiotemporal emission profiles, for improving smoke forecasts.
Elias C. Massoud, A. Anthony Bloom, Marcos Longo, John T. Reager, Paul A. Levine, and John R. Worden
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2021-104, https://doi.org/10.5194/hess-2021-104, 2021
Preprint under review for HESS
Short summary
Short summary
The water balance on river basin scales depends on a number of soil physical processes. Gaining information on these quantities using observations is a key step towards improving the skill of land surface hydrology models. In this study, we use data from the Gravity Recovery and Climate Experiment (NASA-GRACE) to inform and constrain these hydrologic processes. We show that our model is able to simulate the land hydrologic cycle for a watershed in the Amazon from January 2003 to December 2012.
Jens Redemann, Robert Wood, Paquita Zuidema, Sarah J. Doherty, Bernadette Luna, Samuel E. LeBlanc, Michael S. Diamond, Yohei Shinozuka, Ian Y. Chang, Rei Ueyama, Leonhard Pfister, Ju-Mee Ryoo, Amie N. Dobracki, Arlindo M. da Silva, Karla M. Longo, Meloë S. Kacenelenbogen, Connor J. Flynn, Kristina Pistone, Nichola M. Knox, Stuart J. Piketh, James M. Haywood, Paola Formenti, Marc Mallet, Philip Stier, Andrew S. Ackerman, Susanne E. Bauer, Ann M. Fridlind, Gregory R. Carmichael, Pablo E. Saide, Gonzalo A. Ferrada, Steven G. Howell, Steffen Freitag, Brian Cairns, Brent N. Holben, Kirk D. Knobelspiesse, Simone Tanelli, Tristan S. L'Ecuyer, Andrew M. Dzambo, Ousmane O. Sy, Greg M. McFarquhar, Michael R. Poellot, Siddhant Gupta, Joseph R. O'Brien, Athanasios Nenes, Mary Kacarab, Jenny P. S. Wong, Jennifer D. Small-Griswold, Kenneth L. Thornhill, David Noone, James R. Podolske, K. Sebastian Schmidt, Peter Pilewskie, Hong Chen, Sabrina P. Cochrane, Arthur J. Sedlacek, Timothy J. Lang, Eric Stith, Michal Segal-Rozenhaimer, Richard A. Ferrare, Sharon P. Burton, Chris A. Hostetler, David J. Diner, Felix C. Seidel, Steven E. Platnick, Jeffrey S. Myers, Kerry G. Meyer, Douglas A. Spangenberg, Hal Maring, and Lan Gao
Atmos. Chem. Phys., 21, 1507–1563, https://doi.org/10.5194/acp-21-1507-2021, https://doi.org/10.5194/acp-21-1507-2021, 2021
Short summary
Short summary
Southern Africa produces significant biomass burning emissions whose impacts on regional and global climate are poorly understood. ORACLES (ObseRvations of Aerosols above CLouds and their intEractionS) is a 5-year NASA investigation designed to study the key processes that determine these climate impacts. The main purpose of this paper is to familiarize the broader scientific community with the ORACLES project, the dataset it produced, and the most important initial findings.
Kristina Pistone, Paquita Zuidema, Robert Wood, Michael Diamond, Arlindo M. da Silva, Gonzalo Ferrada, Pablo Saide, Rei Ueyama, Ju-Mee Ryoo, Leonhard Pfister, James Podolske, David Noone, Ryan Bennett, Eric Stith, Gregory Carmichael, Jens Redemann, Connor Flynn, Samuel LeBlanc, Michal Segal-Rozenhaimer, and Yohei Shinozuka
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2020-1322, https://doi.org/10.5194/acp-2020-1322, 2021
Revised manuscript under review for ACP
Short summary
Short summary
Using aircraft-based measurements off the Atlantic coast of Africa, we found that the springtime smoke plume there was strongly linearly correlated with the amount of water vapor in the atmosphere (where there is more smoke, there is more humidity). We see the same general feature in satellite-assimilated (reanalyses) and free-running models, which suggests that the humidity-smoke relationship is not a product of burning but originates over the continent and is transported without mixing.
Breno Raphaldini, André S. W. Teruya, Pedro Leite da Silva Dias, Lucas Massaroppe, and Daniel Yasumasa Takahashi
Earth Syst. Dynam., 12, 83–101, https://doi.org/10.5194/esd-12-83-2021, https://doi.org/10.5194/esd-12-83-2021, 2021
Short summary
Short summary
Several recent studies suggest a modulation of the Madden–Julian oscillation (MJO) by the quasi-biennial oscillation (QBO). The physics behind this interaction, however, remain poorly understood. In this study, we investigated the QBO–MJO interaction and the role of stratospheric ozone as a forcing mechanism. A normal-mode decomposition procedure combined with causality analysis reveals significant interactions between MJO-related modes and QBO-related modes.
Maoyi Huang, Yi Xu, Marcos Longo, Michael Keller, Ryan G. Knox, Charles D. Koven, and Rosie A. Fisher
Biogeosciences, 17, 4999–5023, https://doi.org/10.5194/bg-17-4999-2020, https://doi.org/10.5194/bg-17-4999-2020, 2020
Short summary
Short summary
The Functionally Assembled Terrestrial Ecosystem Simulator (FATES) is enhanced to mimic the ecological, biophysical, and biogeochemical processes following a logging event. The model can specify the timing and aerial extent of logging events; determine the survivorship of cohorts in the disturbed forest; and modifying the biomass, coarse woody debris, and litter pools. This study lays the foundation to simulate land use change and forest degradation in FATES as part of an Earth system model.
Yohei Shinozuka, Pablo E. Saide, Gonzalo A. Ferrada, Sharon P. Burton, Richard Ferrare, Sarah J. Doherty, Hamish Gordon, Karla Longo, Marc Mallet, Yan Feng, Qiaoqiao Wang, Yafang Cheng, Amie Dobracki, Steffen Freitag, Steven G. Howell, Samuel LeBlanc, Connor Flynn, Michal Segal-Rosenhaimer, Kristina Pistone, James R. Podolske, Eric J. Stith, Joseph Ryan Bennett, Gregory R. Carmichael, Arlindo da Silva, Ravi Govindaraju, Ruby Leung, Yang Zhang, Leonhard Pfister, Ju-Mee Ryoo, Jens Redemann, Robert Wood, and Paquita Zuidema
Atmos. Chem. Phys., 20, 11491–11526, https://doi.org/10.5194/acp-20-11491-2020, https://doi.org/10.5194/acp-20-11491-2020, 2020
Short summary
Short summary
In the southeast Atlantic, well-defined smoke plumes from Africa advect over marine boundary layer cloud decks; both are most extensive around September, when most of the smoke resides in the free troposphere. A framework is put forth for evaluating the performance of a range of global and regional atmospheric composition models against observations made during the NASA ORACLES (ObseRvations of Aerosols above CLouds and their intEractionS) airborne mission in September 2016.
Kirk Knobelspiesse, Henrique M. J. Barbosa, Christine Bradley, Carol Bruegge, Brian Cairns, Gao Chen, Jacek Chowdhary, Anthony Cook, Antonio Di Noia, Bastiaan van Diedenhoven, David J. Diner, Richard Ferrare, Guangliang Fu, Meng Gao, Michael Garay, Johnathan Hair, David Harper, Gerard van Harten, Otto Hasekamp, Mark Helmlinger, Chris Hostetler, Olga Kalashnikova, Andrew Kupchock, Karla Longo De Freitas, Hal Maring, J. Vanderlei Martins, Brent McBride, Matthew McGill, Ken Norlin, Anin Puthukkudy, Brian Rheingans, Jeroen Rietjens, Felix C. Seidel, Arlindo da Silva, Martijn Smit, Snorre Stamnes, Qian Tan, Sebastian Val, Andrzej Wasilewski, Feng Xu, Xiaoguang Xu, and John Yorks
Earth Syst. Sci. Data, 12, 2183–2208, https://doi.org/10.5194/essd-12-2183-2020, https://doi.org/10.5194/essd-12-2183-2020, 2020
Short summary
Short summary
The Aerosol Characterization from Polarimeter and Lidar (ACEPOL) field campaign is a resource for the next generation of spaceborne multi-angle polarimeter (MAP) and lidar missions. Conducted in the fall of 2017 from the Armstrong Flight Research Center in Palmdale, California, four MAP instruments and two lidars were flown on the high-altitude ER-2 aircraft over a variety of scene types and ground assets. Data are freely available to the public and useful for algorithm development and testing.
Saulo R. Freitas, Georg A. Grell, and Haiqin Li
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-38, https://doi.org/10.5194/gmd-2020-38, 2020
Revised manuscript under review for GMD
Short summary
Short summary
Convection Parameterization is a component of atmospheric models aiming to represent the statistical effects of sub-grid scale convective clouds. Because the atmosphere contains circulations with a broad spectrum of scales, the truncation needed to run models in computers requires the introduction of parameterizations to account for processes that are not explicitly resolved. We detail recent developments in the Grell-Freitas CP, which has been applied in several regional and global models.
Renato Kerches Braghiere, Marcia Akemi Yamasoe, Nilton Manuel Évora do Rosário, Humberto Ribeiro da Rocha, José de Souza Nogueira, and Alessandro Carioca de Araújo
Atmos. Chem. Phys., 20, 3439–3458, https://doi.org/10.5194/acp-20-3439-2020, https://doi.org/10.5194/acp-20-3439-2020, 2020
Short summary
Short summary
We evaluate how the interaction of smoke with sun light impacts the exchange of energy and mass between vegetation and the atmosphere using a machine learning technique. We found an effect of the smoke on CO2, energy, and water fluxes, linking the effects of smoke with temperature, humidity, and winds. CO2 exchange increased by up to 55 % in the presence of smoke. A decrease of 12 % was observed for a site with simpler vegetation. Energy fluxes were negatively impacted for all study sites.
Marcos Longo, Ryan G. Knox, David M. Medvigy, Naomi M. Levine, Michael C. Dietze, Yeonjoo Kim, Abigail L. S. Swann, Ke Zhang, Christine R. Rollinson, Rafael L. Bras, Steven C. Wofsy, and Paul R. Moorcroft
Geosci. Model Dev., 12, 4309–4346, https://doi.org/10.5194/gmd-12-4309-2019, https://doi.org/10.5194/gmd-12-4309-2019, 2019
Short summary
Short summary
Our paper describes the Ecosystem Demography model. This computer program calculates how plants and ground exchange heat, water, and carbon with the air, and how plants grow, reproduce and die in different climates. Most models simplify forests to an average big tree. We consider that tall, deep-rooted trees get more light and water than small plants, and that some plants can with shade and drought. This diversity helps us to better explain how plants live and interact with the atmosphere.
Marcos Longo, Ryan G. Knox, Naomi M. Levine, Abigail L. S. Swann, David M. Medvigy, Michael C. Dietze, Yeonjoo Kim, Ke Zhang, Damien Bonal, Benoit Burban, Plínio B. Camargo, Matthew N. Hayek, Scott R. Saleska, Rodrigo da Silva, Rafael L. Bras, Steven C. Wofsy, and Paul R. Moorcroft
Geosci. Model Dev., 12, 4347–4374, https://doi.org/10.5194/gmd-12-4347-2019, https://doi.org/10.5194/gmd-12-4347-2019, 2019
Short summary
Short summary
The Ecosystem Demography model calculates the fluxes of heat, water, and carbon between plants and ground and the air, and the life cycle of plants in different climates. To test if our calculations were reasonable, we compared our results with field and satellite measurements. Our model predicts well the extent of the Amazon forest, how much light forests absorb, and how much water forests release to the air. However, it must improve the tree growth rates and how fast dead plants decompose.
Marcos A. S. Scaranello, Michael Keller, Marcos Longo, Maiza N. dos-Santos, Veronika Leitold, Douglas C. Morton, Ekena R. Pinagé, and Fernando Del Bon Espírito-Santo
Biogeosciences, 16, 3457–3474, https://doi.org/10.5194/bg-16-3457-2019, https://doi.org/10.5194/bg-16-3457-2019, 2019
Short summary
Short summary
The coarse dead wood component of the tropical forest carbon pool is rarely measured. For the first time, we developed models for predicting coarse dead wood in Amazonian forests by using airborne laser scanning data. Our models produced site-based estimates similar to independent field estimates found in the literature. Our study provides an approach for estimating coarse dead wood pools from remotely sensed data and mapping those pools over large scales in intact and degraded forests.
Lianet Hernández Pardo, Luiz Augusto Toledo Machado, Micael Amore Cecchini, and Madeleine Sánchez Gácita
Atmos. Chem. Phys., 19, 7839–7857, https://doi.org/10.5194/acp-19-7839-2019, https://doi.org/10.5194/acp-19-7839-2019, 2019
Short summary
Short summary
This work analyzes the effects of changes in the environmental aerosol population on Amazonian clouds. The results confirm that the clouds can be very sensitive to changes in the aerosol properties, but the relative importance of each property is variable and depends on the values of the other aerosol characteristics, especially aerosol size. This is controlled by the degree to which the cloud mixes with the surrounding air and by the efficiency with which aerosols are consumed by droplets.
Fernando Santos, Karla Longo, Alex Guenther, Saewung Kim, Dasa Gu, Dave Oram, Grant Forster, James Lee, James Hopkins, Joel Brito, and Saulo Freitas
Atmos. Chem. Phys., 18, 12715–12734, https://doi.org/10.5194/acp-18-12715-2018, https://doi.org/10.5194/acp-18-12715-2018, 2018
Short summary
Short summary
We investigated the impact of biomass burning on the chemical composition of trace gases in the Amazon. The findings corroborate the influence of biomass burning activity not only on direct emissions of particulate matter but also on the oxidative capacity to produce secondary organic aerosol. The scientists plan to use this information to improve the numerical model simulation with a better representativeness of the chemical processes, which can impact on global climate prediction.
Matthew N. Hayek, Marcos Longo, Jin Wu, Marielle N. Smith, Natalia Restrepo-Coupe, Raphael Tapajós, Rodrigo da Silva, David R. Fitzjarrald, Plinio B. Camargo, Lucy R. Hutyra, Luciana F. Alves, Bruce Daube, J. William Munger, Kenia T. Wiedemann, Scott R. Saleska, and Steven C. Wofsy
Biogeosciences, 15, 4833–4848, https://doi.org/10.5194/bg-15-4833-2018, https://doi.org/10.5194/bg-15-4833-2018, 2018
Short summary
Short summary
We investigated the roles that weather and forest disturbances like drought play in shaping changes in ecosystem photosynthesis and carbon exchange in an Amazon forest. We discovered that weather largely influenced differences between years, but a prior drought, which occurred 3 years before measurements started, likely hampered photosynthesis in the first year. This is the first atmospheric evidence that drought can have legacy impacts on Amazon forest photosynthesis.
Paulo R. Teixeira, Saulo R. de Freitas, Francis W. Correia, and Antonio O. Manzi
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2018-81, https://doi.org/10.5194/gmd-2018-81, 2018
Publication in GMD not foreseen
Short summary
Short summary
Emissions of gases and particulates in urban areas are associated with a mixture of various sources, both natural and anthropogenic. Understanding and quantifying these emissions is necessary in studies of climate change, local air pollution issues, and weather modification. This work will also contribute to improved air quality numerical simulations, provide more accurate scenarios for policymakers and regulatory agencies to develop strategies for controlling the vehicular emissions.
Luiz A. T. Machado, Alan J. P. Calheiros, Thiago Biscaro, Scott Giangrande, Maria A. F. Silva Dias, Micael A. Cecchini, Rachel Albrecht, Meinrat O. Andreae, Wagner F. Araujo, Paulo Artaxo, Stephan Borrmann, Ramon Braga, Casey Burleyson, Cristiano W. Eichholz, Jiwen Fan, Zhe Feng, Gilberto F. Fisch, Michael P. Jensen, Scot T. Martin, Ulrich Pöschl, Christopher Pöhlker, Mira L. Pöhlker, Jean-François Ribaud, Daniel Rosenfeld, Jaci M. B. Saraiva, Courtney Schumacher, Ryan Thalman, David Walter, and Manfred Wendisch
Atmos. Chem. Phys., 18, 6461–6482, https://doi.org/10.5194/acp-18-6461-2018, https://doi.org/10.5194/acp-18-6461-2018, 2018
Short summary
Short summary
This overview discuss the main precipitation processes and their sensitivities to environmental conditions in the Central Amazon Basin. It presents a review of the knowledge acquired about cloud processes and rainfall formation in Amazonas. In addition, this study provides a characterization of the seasonal variation and rainfall sensitivities to topography, surface cover, and aerosol concentration. Airplane measurements were evaluated to characterize and contrast cloud microphysical properties.
Amy K. Hodgson, William T. Morgan, Sebastian O'Shea, Stéphane Bauguitte, James D. Allan, Eoghan Darbyshire, Michael J. Flynn, Dantong Liu, James Lee, Ben Johnson, Jim M. Haywood, Karla M. Longo, Paulo E. Artaxo, and Hugh Coe
Atmos. Chem. Phys., 18, 5619–5638, https://doi.org/10.5194/acp-18-5619-2018, https://doi.org/10.5194/acp-18-5619-2018, 2018
Short summary
Short summary
We flew a large atmospheric research aircraft across a number of different biomass burning environments in the Amazon Basin in September and October 2012. In this paper, we focus on smoke sampled very close to fresh fires (only 600–900 m above the fires and smoke that was 4–6 min old) to examine the chemical components that make up the smoke and their abundance. We found substantial differences in the emitted smoke that are due to the fuel type and combustion processes driving the fires.
Gláuber Camponogara, Maria Assunção Faus da Silva Dias, and Gustavo G. Carrió
Atmos. Chem. Phys., 18, 2081–2096, https://doi.org/10.5194/acp-18-2081-2018, https://doi.org/10.5194/acp-18-2081-2018, 2018
Short summary
Short summary
This study is one of the first that seeks to understand the microphysical effects of biomass burning aerosols from the Amazon Basin on mesoscale convective systems over the La Plata Basin (and neighboring regions). We observed an important link between biomass burning aerosols from the Amazon Basin on mesoscale convective systems over the La Plata Basin throughout numerical simulations. This result is an important step toward the understanding of biomass burning impacts in the Amazon.
Guilherme Augusto Verola Mataveli, Maria Elisa Siqueira Silva, Gabriel Pereira, Francielle da Silva Cardozo, Fernando Shinji Kawakubo, Gabriel Bertani, Julio Cezar Costa, Raquel de Cássia Ramos, and Viviane Valéria da Silva
Nat. Hazards Earth Syst. Sci., 18, 125–144, https://doi.org/10.5194/nhess-18-125-2018, https://doi.org/10.5194/nhess-18-125-2018, 2018
Short summary
Short summary
Orbital remote sensing showed that the Cerrado was the second/first biome for the occurrence of hotspots and burned area (BA), which were higher in the dry season and in the savanna land use and are tending to decrease. Spatial analysis showed that values for the entire biome can hide patterns and that there is a 2- to 3-month lag between precipitation and hotspots/BA, while minimum VCI and maximum hotspots/BA occur in the same month. VCI indicates the susceptibility of vegetation to ignition.
Demerval S. Moreira, Karla M. Longo, Saulo R. Freitas, Marcia A. Yamasoe, Lina M. Mercado, Nilton E. Rosário, Emauel Gloor, Rosane S. M. Viana, John B. Miller, Luciana V. Gatti, Kenia T. Wiedemann, Lucas K. G. Domingues, and Caio C. S. Correia
Atmos. Chem. Phys., 17, 14785–14810, https://doi.org/10.5194/acp-17-14785-2017, https://doi.org/10.5194/acp-17-14785-2017, 2017
Short summary
Short summary
Fire in the Amazon forest produces a large amount of smoke that is released into the atmosphere and covers a large portion of South America for about 3 months each year. The smoke affects the energy and CO2 budgets. Using a numerical atmospheric model, we demonstrated that the smoke changes the forest from a source to a sink of CO2 to the atmosphere. The smoke ultimately acts to at least partially compensate for the forest carbon lost due to fire emissions.
Scott E. Giangrande, Zhe Feng, Michael P. Jensen, Jennifer M. Comstock, Karen L. Johnson, Tami Toto, Meng Wang, Casey Burleyson, Nitin Bharadwaj, Fan Mei, Luiz A. T. Machado, Antonio O. Manzi, Shaocheng Xie, Shuaiqi Tang, Maria Assuncao F. Silva Dias, Rodrigo A. F de Souza, Courtney Schumacher, and Scot T. Martin
Atmos. Chem. Phys., 17, 14519–14541, https://doi.org/10.5194/acp-17-14519-2017, https://doi.org/10.5194/acp-17-14519-2017, 2017
Short summary
Short summary
The Amazon forest is the largest tropical rain forest on the planet, featuring
prolific and diverse cloud conditions. The Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) experiment was motivated by demands to gain a better understanding of aerosol and cloud interactions on climate and the global circulation. The routine DOE ARM observations from this 2-year campaign are summarized to help quantify controls on clouds and precipitation over this undersampled region.
Bruce K. N. Silva, Paulo S. Lucio, Cláudio M. S. Silva, Maria H. C. Spyrides, Madson T. Silva, and Lara M. B. Andradre
Nat. Hazards Earth Syst. Sci. Discuss., https://doi.org/10.5194/nhess-2017-377, https://doi.org/10.5194/nhess-2017-377, 2017
Manuscript not accepted for further review
Sameh A. Abou Rafee, Leila D. Martins, Ana B. Kawashima, Daniela S. Almeida, Marcos V. B. Morais, Rita V. A. Souza, Maria B. L. Oliveira, Rodrigo A. F. Souza, Adan S. S. Medeiros, Viviana Urbina, Edmilson D. Freitas, Scot T. Martin, and Jorge A. Martins
Atmos. Chem. Phys., 17, 7977–7995, https://doi.org/10.5194/acp-17-7977-2017, https://doi.org/10.5194/acp-17-7977-2017, 2017
Short summary
Short summary
This paper evaluates the impact of the emissions from mobile and stationary sources in the Amazon rainforest by using the Weather Research and Forecasting with Chemistry (WRF-Chem) model. Results show that stationary sources have an important role in the contribution of human activity in Manaus; a future scenario of the expansion in the urban area demonstrates that it could increase air pollution; and the pollutant urban plume of Manaus has an impact over hundreds of kilometers in length.
Joana A. Rizzolo, Cybelli G. G. Barbosa, Guilherme C. Borillo, Ana F. L. Godoi, Rodrigo A. F. Souza, Rita V. Andreoli, Antônio O. Manzi, Marta O. Sá, Eliane G. Alves, Christopher Pöhlker, Isabella H. Angelis, Florian Ditas, Jorge Saturno, Daniel Moran-Zuloaga, Luciana V. Rizzo, Nilton E. Rosário, Theotonio Pauliquevis, Rosa M. N. Santos, Carlos I. Yamamoto, Meinrat O. Andreae, Paulo Artaxo, Philip E. Taylor, and Ricardo H. M. Godoi
Atmos. Chem. Phys., 17, 2673–2687, https://doi.org/10.5194/acp-17-2673-2017, https://doi.org/10.5194/acp-17-2673-2017, 2017
Short summary
Short summary
Particles collected from the air above the Amazon Basin during the wet season were identified as Saharan dust. Soluble minerals were analysed to assess the bioavailability of iron. Dust deposited onto the canopy and topsoil can likely benefit organisms such as fungi and lichens. The ongoing deposition of Saharan dust across the Amazon rainforest provides an iron-rich source of essential macronutrients and micronutrients to plant roots, and also directly to plant leaves during the wet season.
Madeleine Sánchez Gácita, Karla M. Longo, Julliana L. M. Freire, Saulo R. Freitas, and Scot T. Martin
Atmos. Chem. Phys., 17, 2373–2392, https://doi.org/10.5194/acp-17-2373-2017, https://doi.org/10.5194/acp-17-2373-2017, 2017
Short summary
Short summary
This study uses an adiabatic cloud model to simulate the activation of smoke aerosol particles in the Amazon region as cloud condensation nuclei (CCN). The relative importance of variability in hygroscopicity, mixing state, and activation kinetics for the activated fraction and maximum supersaturation is assessed. Our findings on uncertainties and sensitivities provide guidance on appropriate simplifications that can be used for modeling of smoke aerosols within general circulation models.
Carolin Walter, Saulo R. Freitas, Christoph Kottmeier, Isabel Kraut, Daniel Rieger, Heike Vogel, and Bernhard Vogel
Atmos. Chem. Phys., 16, 9201–9219, https://doi.org/10.5194/acp-16-9201-2016, https://doi.org/10.5194/acp-16-9201-2016, 2016
Short summary
Short summary
Buoyancy produced by vegetation fires can lead to substantial plume rise with consequences for the dispersion of aerosol emitted by the fires. To study this effect a 1-D plume rise model was included into the regional online integrated model system COSMO-ART. Comparing model results and satellite data for a case study of 2010 Canadian wildfires shows, that the plume rise model outperforms prescribed emission height. The radiative impact of the aerosol leads to a pronounced temperature change.
Gabriel Pereira, Ricardo Siqueira, Nilton E. Rosário, Karla L. Longo, Saulo R. Freitas, Francielle S. Cardozo, Johannes W. Kaiser, and Martin J. Wooster
Atmos. Chem. Phys., 16, 6961–6975, https://doi.org/10.5194/acp-16-6961-2016, https://doi.org/10.5194/acp-16-6961-2016, 2016
Short summary
Short summary
Fires associated with land use and land cover changes release large amounts of aerosols and trace gases into the atmosphere. Although several inventories of biomass burning emissions cover Brazil, there are still considerable uncertainties and differences among them. However, results indicate that emission derived via similar methods tend to agree with one other, but aerosol emissions from fires with particularly high biomass consumption still lead to an underestimation.
S. T. Martin, P. Artaxo, L. A. T. Machado, A. O. Manzi, R. A. F. Souza, C. Schumacher, J. Wang, M. O. Andreae, H. M. J. Barbosa, J. Fan, G. Fisch, A. H. Goldstein, A. Guenther, J. L. Jimenez, U. Pöschl, M. A. Silva Dias, J. N. Smith, and M. Wendisch
Atmos. Chem. Phys., 16, 4785–4797, https://doi.org/10.5194/acp-16-4785-2016, https://doi.org/10.5194/acp-16-4785-2016, 2016
Short summary
Short summary
The Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) Experiment took place in central Amazonia throughout 2014 and 2015. The experiment focused on the complex links among vegetation, atmospheric chemistry, and aerosol production on the one hand and their connections to aerosols, clouds, and precipitation on the other, especially when altered by urban pollution. This article serves as an introduction to the special issue of publications presenting findings of this experiment.
Douglas C. Morton, Jérémy Rubio, Bruce D. Cook, Jean-Philippe Gastellu-Etchegorry, Marcos Longo, Hyeungu Choi, Maria Hunter, and Michael Keller
Biogeosciences, 13, 2195–2206, https://doi.org/10.5194/bg-13-2195-2016, https://doi.org/10.5194/bg-13-2195-2016, 2016
Short summary
Short summary
Seasonal dynamics of tropical forest productivity remain an important source of uncertainty in assessments of the land carbon sink. This study confirms the potential for canopy structure and illumination geometry to alter the seasonal availability of light for canopy photosynthesis without changes in canopy composition. Our results point to the need for 3-D forest structure in ecosystem models to account the impact of changing illumination geometry on tropical forest productivity.
R. Paugam, M. Wooster, S. Freitas, and M. Val Martin
Atmos. Chem. Phys., 16, 907–925, https://doi.org/10.5194/acp-16-907-2016, https://doi.org/10.5194/acp-16-907-2016, 2016
Short summary
Short summary
Landscape fire plume height controls fire emissions release in the atmosphere, in particular their transport that may also affect the longevity, chemical conversion, and fate of the plumes chemical constituents. Here, we review how such landscape-scale fire smoke plume injection heights are represented in large-scale atmospheric transport models aiming to represent the impacts of wildfire emissions on component of the Earth system.
R. Paugam, M. Wooster, J. Atherton, S. R. Freitas, M. G. Schultz, and J. W. Kaiser
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acpd-15-9815-2015, https://doi.org/10.5194/acpd-15-9815-2015, 2015
Revised manuscript not accepted
Short summary
Short summary
The transport of Biomass Burning emissions in Chemical Transport Model rely on parametrization of plumes injection height. Using fire observation selected to ensure match-up of fire-atmosphere-plume dynamics; a popular plume rise model was improved and optimized. The resulting model shows response to the effect of atmospheric stability consistent with previous findings and is able to predict higher injection height than any other tested parametrizations, giving a closer match with observation.
S. Archer-Nicholls, D. Lowe, E. Darbyshire, W. T. Morgan, M. M. Bela, G. Pereira, J. Trembath, J. W. Kaiser, K. M. Longo, S. R. Freitas, H. Coe, and G. McFiggans
Geosci. Model Dev., 8, 549–577, https://doi.org/10.5194/gmd-8-549-2015, https://doi.org/10.5194/gmd-8-549-2015, 2015
Short summary
Short summary
The regional WRF-Chem model was used to study aerosol particles from biomass burning in South America. The modelled estimates of fire plume injection heights were found to be too high, with serious implications for modelled aerosol vertical distribution, transport and impacts on local climate. A modified emission scenario was developed which improved the predicted injection height. Model results were compared and evaluated against in situ measurements from the 2012 SAMBBA flight campaign.
M. M. Bela, K. M. Longo, S. R. Freitas, D. S. Moreira, V. Beck, S. C. Wofsy, C. Gerbig, K. Wiedemann, M. O. Andreae, and P. Artaxo
Atmos. Chem. Phys., 15, 757–782, https://doi.org/10.5194/acp-15-757-2015, https://doi.org/10.5194/acp-15-757-2015, 2015
Short summary
Short summary
In the Amazon Basin, gases that lead to the formation of ozone (O3), an air pollutant and greenhouse gas, are emitted from fire, urban and biogenic sources. This study presents the first basin wide aircraft measurements of O3 during the dry-to-wet and wet-to-dry transition seasons, which show extremely low values above undisturbed forest and increases from fires. This work also demonstrates the capabilities and limitations of regional atmospheric chemistry models in representing O3 in Amazonia.
R. G. Knox, M. Longo, A. L. S. Swann, K. Zhang, N. M. Levine, P. R. Moorcroft, and R. L. Bras
Hydrol. Earth Syst. Sci., 19, 241–273, https://doi.org/10.5194/hess-19-241-2015, https://doi.org/10.5194/hess-19-241-2015, 2015
J. Brito, L. V. Rizzo, W. T. Morgan, H. Coe, B. Johnson, J. Haywood, K. Longo, S. Freitas, M. O. Andreae, and P. Artaxo
Atmos. Chem. Phys., 14, 12069–12083, https://doi.org/10.5194/acp-14-12069-2014, https://doi.org/10.5194/acp-14-12069-2014, 2014
Short summary
Short summary
This paper details the physical--chemical characteristics of aerosols in a region strongly impacted by biomass burning in the western part of the Brazilian Amazon region. For such, a large suite of state-of-the-art instruments for realtime analysis was deployed at a ground site. Among the key findings, we observe the strong prevalence of organic aerosols associated to fire emissions, with important climate effects, and indications of its very fast processing in the atmosphere.
J. R. Rozante, D. S. Moreira, R. C. M. Godoy, and A. A. Fernandes
Geosci. Model Dev., 7, 2333–2343, https://doi.org/10.5194/gmd-7-2333-2014, https://doi.org/10.5194/gmd-7-2333-2014, 2014
G. A. Grell and S. R. Freitas
Atmos. Chem. Phys., 14, 5233–5250, https://doi.org/10.5194/acp-14-5233-2014, https://doi.org/10.5194/acp-14-5233-2014, 2014
G. Camponogara, M. A. F. Silva Dias, and G. G. Carrió
Atmos. Chem. Phys., 14, 4397–4407, https://doi.org/10.5194/acp-14-4397-2014, https://doi.org/10.5194/acp-14-4397-2014, 2014
R. G. Knox, M. Longo, A. L. S. Swann, K. Zhang, N. M. Levine, P. R. Moorcroft, and R. L. Bras
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-10-15295-2013, https://doi.org/10.5194/hessd-10-15295-2013, 2013
Preprint withdrawn
A. F. dos Santos, S. R. Freitas, J. G. Z. de Mattos, H. F. de Campos Velho, M. A. Gan, E. F. P. da Luz, and G. A. Grell
Adv. Geosci., 35, 123–136, https://doi.org/10.5194/adgeo-35-123-2013, https://doi.org/10.5194/adgeo-35-123-2013, 2013
K. M. Longo, S. R. Freitas, M. Pirre, V. Marécal, L. F. Rodrigues, J. Panetta, M. F. Alonso, N. E. Rosário, D. S. Moreira, M. S. Gácita, J. Arteta, R. Fonseca, R. Stockler, D. M. Katsurayama, A. Fazenda, and M. Bela
Geosci. Model Dev., 6, 1389–1405, https://doi.org/10.5194/gmd-6-1389-2013, https://doi.org/10.5194/gmd-6-1389-2013, 2013
D. S. Moreira, S. R. Freitas, J. P. Bonatti, L. M. Mercado, N. M. É. Rosário, K. M. Longo, J. B. Miller, M. Gloor, and L. V. Gatti
Geosci. Model Dev., 6, 1243–1259, https://doi.org/10.5194/gmd-6-1243-2013, https://doi.org/10.5194/gmd-6-1243-2013, 2013
V. Beck, C. Gerbig, T. Koch, M. M. Bela, K. M. Longo, S. R. Freitas, J. O. Kaplan, C. Prigent, P. Bergamaschi, and M. Heimann
Atmos. Chem. Phys., 13, 7961–7982, https://doi.org/10.5194/acp-13-7961-2013, https://doi.org/10.5194/acp-13-7961-2013, 2013
M. Stuefer, S. R. Freitas, G. Grell, P. Webley, S. Peckham, S. A. McKeen, and S. D. Egan
Geosci. Model Dev., 6, 457–468, https://doi.org/10.5194/gmd-6-457-2013, https://doi.org/10.5194/gmd-6-457-2013, 2013
N. E. Rosário, K. M. Longo, S. R. Freitas, M. A. Yamasoe, and R. M. Fonseca
Atmos. Chem. Phys., 13, 2923–2938, https://doi.org/10.5194/acp-13-2923-2013, https://doi.org/10.5194/acp-13-2923-2013, 2013
S. Strada, S. R. Freitas, C. Mari, K. M. Longo, and R. Paugam
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmdd-6-721-2013, https://doi.org/10.5194/gmdd-6-721-2013, 2013
Preprint withdrawn
Related subject area
Atmospheric sciences
The Environment and Climate Change Canada Carbon Assimilation System (EC-CAS v1.0): demonstration with simulated CO observations
WRF4PALM v1.0: a mesoscale dynamical driver for the microscale PALM model system 6.0
pyPI (v1.3): Tropical Cyclone Potential Intensity Calculations in Python
Comparison of three aerosol representations of NHM-Chem (v1.0) for the simulations of air quality and climate-relevant variables
JlBox v1.1: a Julia-based multi-phase atmospheric chemistry box model
A new Lagrangian in-time particle simulation module (Itpas v1) for atmospheric particle dispersion
Effects of black carbon morphology on brown carbon absorption estimation: from numerical aspects
Simulation of the evolution of biomass burning organic aerosol with different volatility basis set schemes in PMCAMx-SRv1.0
Novel estimation of aerosol processes with particle size distribution measurements: a case study with the TOMAS algorithm v1.0.0
Evaluation of ECMWF IFS-AER (CAMS) operational forecasts during cycle 41r1–46r1 with calibrated ceilometer profiles over Germany
Influence of biomass burning vapor wall loss correction on modeling organic aerosols in Europe by CAMx v6.50
Seasonal and diurnal performance of daily forecasts with WRF V3.8.1 over the United Arab Emirates
MLAir (v1.0) – a tool to enable fast and flexible machine learning on air data time series
snowScatt 1.0: consistent model of microphysical and scattering properties of rimed and unrimed snowflakes based on the self-similar Rayleigh–Gans approximation
Effects of spatial resolution on WRF v3.8.1 simulated meteorology over the central Himalaya
On the suitability of second-order accurate finite-volume solvers for the simulation of atmospheric boundary layer flow
An urban large-eddy-simulation-based dispersion model for marginal grid resolutions: CAIRDIO v1.0
Applying a new integrated mass-flux adjustment filter in rapid update cycling of convective-scale data assimilation for the COSMO model (v5.07)
On the model uncertainties in Bayesian source reconstruction using an ensemble of weather predictions, the emission inverse modelling system FREAR v1.0, and the Lagrangian transport and dispersion model Flexpart v9.0.2
Evaluation of the interactive stratospheric ozone (O3v2) module in the E3SM version 1 Earth system model
Development of an atmospheric chemistry model coupled to the PALM model system 6.0: implementation and first applications
The Vertical City Weather Generator (VCWG v1.3.2)
A new gas absorption optical depth parameterisation for RTTOV v13
A zero-dimensional view of atmospheric degradation of levoglucosan (LEVCHEM_v1) using numerical chamber simulations
The Nonhydrostatic ICosahedral Atmospheric Model for CMIP6 HighResMIP simulations (NICAM16-S): experimental design, model description, and impacts of model updates
Using radar observations to evaluate 3-D radar echo structure simulated by the Energy Exascale Earth System Model (E3SM) version 1
Development of WRF/CUACE v1.0 model and its preliminary application in simulating air quality in China
PyCHAM (v2.1.1): a Python box model for simulating aerosol chambers
A revised dry deposition scheme for land–atmosphere exchange of trace gases in ECHAM/MESSy v2.54
Improving dust simulations in WRF-Chem v4.1.3 coupled with the GOCART aerosol module
FALL3D-8.0: a computational model for atmospheric transport and deposition of particles, aerosols and radionuclides – Part 2: Model validation
Implementation of a synthetic inflow turbulence generator in idealised WRF v3.6.1 large eddy simulations under neutral atmospheric conditions
Numerical study of the effects of initial conditions and emissions on PM2.5 concentration simulations with CAMx v6.1: a Xi'an case study
A multi-year short-range hindcast experiment with CESM1 for evaluating climate model moist processes from diurnal to interannual timescales
Ground-based lidar processing and simulator framework for comparing models and observations (ALCF 1.0)
Development of an Ozone Monitoring Instrument (OMI) aerosol index (AI) data assimilation scheme for aerosol modeling over bright surfaces – a step toward direct radiance assimilation in the UV spectrum
IntelliO3-ts v1.0: a neural network approach to predict near-surface ozone concentrations in Germany
Development and evaluation of spectral nudging strategy for the simulation of summer precipitation over the Tibetan Plateau
ISBA-MEB (SURFEX v8.1): model snow evaluation for local-scale forest sites
Evaluating and improving the treatment of gases in radiation schemes: the Correlated K-Distribution Model Intercomparison Project (CKDMIP)
A case study of wind farm effects using two wake parameterizations in WRF (V3.7) in the presence of low level jets
GenChem v1.0 – a chemical pre-processing and testing system for atmospheric modelling
The Detailed Emissions Scaling, Isolation, and Diagnostic (DESID) module in the Community Multiscale Air Quality (CMAQ) Modeling System version 5.3
Incoming data quality control in high-resolution urban climate simulations: a Hong Kong–Shenzhen area urban climate simulation as a case study using the WRF/Noah LSM/SLUCM model (Version 3.7.1)
Configuration and evaluation of a global unstructured mesh atmospheric model (GRIST-A20.9) based on the variable-resolution approach
Description of the uEMEP_v5 downscaling approach for the EMEP MSC-W chemistry transport model
Development of a three-dimensional variational assimilation system for lidar profile data based on a size-resolved aerosol model in WRF–Chem model v3.9.1 and its application in PM2.5 forecasts across China
Using wavelet transform and dynamic time warping to identify the limitations of the CNN model as an air quality forecasting system
In-cloud scavenging scheme for sectional aerosol modules – implementation in the framework of the Sectional Aerosol module for Large Scale Applications version 2.0 (SALSA2.0) global aerosol module
APFoam-1.0: integrated CFD simulation of O3–NOx–VOCs chemistry and pollutant dispersion in typical street canyon
Vikram Khade, Saroja M. Polavarapu, Michael Neish, Pieter L. Houtekamer, Dylan B. A. Jones, Seung-Jong Baek, Tai-Long He, and Sylvie Gravel
Geosci. Model Dev., 14, 2525–2544, https://doi.org/10.5194/gmd-14-2525-2021, https://doi.org/10.5194/gmd-14-2525-2021, 2021
Short summary
Short summary
A new modeling system has been developed at Environment and Climate Change Canada to ingest observations of carbon monoxide (CO) into a coupled weather and constituent transport model. We show that accounting for the uncertainty in surface flux leads to a better estimate of CO distributions. The benefit of assimilating observations from different simulated networks varies with region. This is the first step towards developing a state and flux estimation system for greenhouse gases.
Dongqi Lin, Basit Khan, Marwan Katurji, Leroy Bird, Ricardo Faria, and Laura E. Revell
Geosci. Model Dev., 14, 2503–2524, https://doi.org/10.5194/gmd-14-2503-2021, https://doi.org/10.5194/gmd-14-2503-2021, 2021
Short summary
Short summary
We present an open-source toolbox WRF4PALM, which enables weather dynamics simulation within urban landscapes. WRF4PALM passes meteorological information from the popular Weather Research and Forecasting (WRF) model to the turbulence-resolving PALM model system 6.0. WRF4PALM can potentially extend the use of WRF and PALM with realistic boundary conditions to any part of the world. WRF4PALM will help study air pollution dispersion, wind energy prospecting, and high-impact wind forecasting.
Daniel M. Gilford
Geosci. Model Dev., 14, 2351–2369, https://doi.org/10.5194/gmd-14-2351-2021, https://doi.org/10.5194/gmd-14-2351-2021, 2021
Short summary
Short summary
Potential intensity (PI) is a tropical cyclone's maximum speed limit given by modeling the storm as a thermal heat engine. pyPI is the first software package fully documenting the PI algorithm and translating it to Python. This study details/validates the underlying PI model and demonstrates its use in tropical cyclone intensity research. pyPI supports open science and transparency in the tropical meteorological community and is ideally suited for ongoing community development and improvement.
Mizuo Kajino, Makoto Deushi, Tsuyoshi Thomas Sekiyama, Naga Oshima, Keiya Yumimoto, Taichu Yasumichi Tanaka, Joseph Ching, Akihiro Hashimoto, Tetsuya Yamamoto, Masaaki Ikegami, Akane Kamada, Makoto Miyashita, Yayoi Inomata, Shin-ichiro Shima, Pradeep Khatri, Atsushi Shimizu, Hitoshi Irie, Kouji Adachi, Yuji Zaizen, Yasuhito Igarashi, Hiromasa Ueda, Takashi Maki, and Masao Mikami
Geosci. Model Dev., 14, 2235–2264, https://doi.org/10.5194/gmd-14-2235-2021, https://doi.org/10.5194/gmd-14-2235-2021, 2021
Short summary
Short summary
This study compares performance of aerosol representation methods of the Japan Meteorological Agency's regional-scale nonhydrostatic meteorology–chemistry model (NHM-Chem). It indicates separate treatment of sea salt and dust in coarse mode and that of light-absorptive and non-absorptive particles in fine mode could provide accurate assessments on aerosol feedback processes.
Langwen Huang and David Topping
Geosci. Model Dev., 14, 2187–2203, https://doi.org/10.5194/gmd-14-2187-2021, https://doi.org/10.5194/gmd-14-2187-2021, 2021
Short summary
Short summary
As our knowledge and understanding of atmospheric aerosol particle evolution and impact grows, designing community mechanistic models requires an ability to capture increasing chemical, physical and therefore numerical complexity. As the landscape of computing software and hardware evolves, it is important to profile the usefulness of emerging platforms in tackling this complexity. With this in mind we present JlBox v1.1, written in Julia.
Matthias Faust, Ralf Wolke, Steffen Münch, Roger Funk, and Kerstin Schepanski
Geosci. Model Dev., 14, 2205–2220, https://doi.org/10.5194/gmd-14-2205-2021, https://doi.org/10.5194/gmd-14-2205-2021, 2021
Short summary
Short summary
Trajectory dispersion models are powerful and intuitive tools for tracing air pollution through the atmosphere. But the turbulent nature of the atmospheric boundary layer makes it challenging to provide accurate predictions near the surface. To overcome this, we propose an approach using wind and turbulence information at high temporal resolution. Finally, we demonstrate the strength of our approach in a case study on dust emissions from agriculture.
Jie Luo, Yongming Zhang, and Qixing Zhang
Geosci. Model Dev., 14, 2113–2126, https://doi.org/10.5194/gmd-14-2113-2021, https://doi.org/10.5194/gmd-14-2113-2021, 2021
Short summary
Short summary
In this work, we developed a numerical method to investigate the effects of black carbon (BC) morphology on the estimation of brown carbon (BrC) absorption using the absorption Ångström exponent (AAE) method. We found that BC morphologies have significant impacts on the estimated BrC absorptions. Moreover, we have demonstrated under what conditions the AAE methods can provide good or bad estimations and explored the reasons for why the good or bad estimations were caused.
Georgia N. Theodoritsi, Giancarlo Ciarelli, and Spyros N. Pandis
Geosci. Model Dev., 14, 2041–2055, https://doi.org/10.5194/gmd-14-2041-2021, https://doi.org/10.5194/gmd-14-2041-2021, 2021
Short summary
Short summary
Two schemes based on the volatility basis set were used for the simulation of biomass burning organic aerosol (bbOA) in the continental US. The first is the default scheme of the PMCAMx-SR model, and the second is a recently developed scheme based on laboratory experiments. The alternative bbOA scheme predicts much higher concentrations. The default scheme performed better during summer and fall, while the alternative scheme was a little better during spring.
Dana L. McGuffin, Yuanlong Huang, Richard C. Flagan, Tuukka Petäjä, B. Erik Ydstie, and Peter J. Adams
Geosci. Model Dev., 14, 1821–1839, https://doi.org/10.5194/gmd-14-1821-2021, https://doi.org/10.5194/gmd-14-1821-2021, 2021
Short summary
Short summary
Atmospheric particle formation, emissions, and growth process rates are significant sources of uncertainty in predicting climate change. We aim to reduce that uncertainty by using measurements from several ground-based sites across Europe. We developed an estimation technique to adapt the governing process rates so model–measurement bias decays. The estimation framework developed has potential to improve model predictions while providing insight into the underlying atmospheric particle physics.
Harald Flentje, Ina Mattis, Zak Kipling, Samuel Rémy, and Werner Thomas
Geosci. Model Dev., 14, 1721–1751, https://doi.org/10.5194/gmd-14-1721-2021, https://doi.org/10.5194/gmd-14-1721-2021, 2021
Short summary
Short summary
Atmospheric aerosols crucially impact air quality, climate and weather. Thus, global model forecasts of atmospheric constituents are published daily on the ECMWF website and are regularly verified by the CAMS service team. The IFS-AER model is largely able to reproduce observed 3-D distributions of the important particle types over Germany. The particle concentration is mostly captured within several tens of percent, but quantification of some specific processes still remains a challenge.
Jianhui Jiang, Imad El Haddad, Sebnem Aksoyoglu, Giulia Stefenelli, Amelie Bertrand, Nicolas Marchand, Francesco Canonaco, Jean-Eudes Petit, Olivier Favez, Stefania Gilardoni, Urs Baltensperger, and André S. H. Prévôt
Geosci. Model Dev., 14, 1681–1697, https://doi.org/10.5194/gmd-14-1681-2021, https://doi.org/10.5194/gmd-14-1681-2021, 2021
Short summary
Short summary
We developed a box model with a volatility basis set to simulate organic aerosol (OA) from biomass burning and optimized the vapor-wall-loss-corrected OA yields with a genetic algorithm. The optimized parameterizations were then implemented in the air quality model CAMx v6.5. Comparisons with ambient measurements indicate that the vapor-wall-loss-corrected parameterization effectively improves the model performance in predicting OA, which reduced the mean fractional bias from −72.9 % to −1.6 %.
Oliver Branch, Thomas Schwitalla, Marouane Temimi, Ricardo Fonseca, Narendra Nelli, Michael Weston, Josipa Milovac, and Volker Wulfmeyer
Geosci. Model Dev., 14, 1615–1637, https://doi.org/10.5194/gmd-14-1615-2021, https://doi.org/10.5194/gmd-14-1615-2021, 2021
Short summary
Short summary
Effective numerical weather forecasting is vital in arid regions like the United Arab Emirates where extreme events like heat waves, flash floods, and dust storms are becoming more severe. This study employs a high-resolution simulation with the WRF-NOAHMP model, and the output is compared with seasonal observation data from 50 weather stations. This type of verification is vital to identify model deficiencies and improve forecasting systems for arid regions.
Lukas Hubert Leufen, Felix Kleinert, and Martin G. Schultz
Geosci. Model Dev., 14, 1553–1574, https://doi.org/10.5194/gmd-14-1553-2021, https://doi.org/10.5194/gmd-14-1553-2021, 2021
Short summary
Short summary
MLAir provides a coherent end-to-end structure for a typical time series analysis workflow using machine learning (ML). MLAir is adaptable to a wide range of ML use cases, focusing in particular on deep learning. The user has a free hand with the ML model itself and can select from different methods during preprocessing, training, and postprocessing. MLAir offers tools to track the experiment conduction, documents necessary ML parameters, and creates a variety of publication-ready plots.
Davide Ori, Leonie von Terzi, Markus Karrer, and Stefan Kneifel
Geosci. Model Dev., 14, 1511–1531, https://doi.org/10.5194/gmd-14-1511-2021, https://doi.org/10.5194/gmd-14-1511-2021, 2021
Short summary
Short summary
Snowflakes have very complex shapes, and modeling their properties requires vast computing power. We produced a large number of realistic snowflakes and modeled their average properties by leveraging their fractal structure. Our approach allows modeling the properties of big ensembles of snowflakes, taking into account their natural variability, at a much lower cost. This enables the usage of remote sensing instruments, such as radars, to monitor the evolution of clouds and precipitation.
Jaydeep Singh, Narendra Singh, Narendra Ojha, Amit Sharma, Andrea Pozzer, Nadimpally Kiran Kumar, Kunjukrishnapillai Rajeev, Sachin S. Gunthe, and V. Rao Kotamarthi
Geosci. Model Dev., 14, 1427–1443, https://doi.org/10.5194/gmd-14-1427-2021, https://doi.org/10.5194/gmd-14-1427-2021, 2021
Short summary
Short summary
Atmospheric models often have limitations in simulating the geographically complex and climatically important central Himalayan region. In this direction, we have performed regional modeling at high resolutions to improve the simulation of meteorology and dynamics through a better representation of the topography. The study has implications for further model applications to investigate the effects of anthropogenic pressure over the Himalaya.
Beatrice Giacomini and Marco G. Giometto
Geosci. Model Dev., 14, 1409–1426, https://doi.org/10.5194/gmd-14-1409-2021, https://doi.org/10.5194/gmd-14-1409-2021, 2021
Short summary
Short summary
The present work evaluates the suitability of an important class of second-order finite-volume solvers for the large-eddy simulation of atmospheric boundary- layer flows. Results show that these solvers do not capture the dominant mechanisms responsible for momentum transport in boundary layers, leading to a misprediction of relevant flow statistics and to an enhanced sensitivity of the solution to variations in grid resolution.
Michael Weger, Oswald Knoth, and Bernd Heinold
Geosci. Model Dev., 14, 1469–1492, https://doi.org/10.5194/gmd-14-1469-2021, https://doi.org/10.5194/gmd-14-1469-2021, 2021
Short summary
Short summary
A new numerical air-quality transport model for cities is presented, in which buildings are described diffusively. The used diffusive-obstacles approach helps to reduce the computational costs for high-resolution simulations as the grid spacing can be more coarse than in traditional approaches. The research which led to this model development was primarily motivated by the need for a computationally feasible downscaling tool for urban wind and pollution fields from meteorological model output.
Yuefei Zeng, Alberto de Lozar, Tijana Janjic, and Axel Seifert
Geosci. Model Dev., 14, 1295–1307, https://doi.org/10.5194/gmd-14-1295-2021, https://doi.org/10.5194/gmd-14-1295-2021, 2021
Short summary
Short summary
A new integrated mass-flux adjustment filter is introduced and examined with an idealized setup for convective-scale radar data assimilation. It is found that the new filter slightly reduces the accuracy of background and analysis states; however, it preserves the main structure of cold pools and primary mesocyclone properties of supercells. More importantly, it successfully diminishes the imbalance in the analysis considerably and improves the forecasts.
Pieter De Meutter, Ian Hoffman, and Kurt Ungar
Geosci. Model Dev., 14, 1237–1252, https://doi.org/10.5194/gmd-14-1237-2021, https://doi.org/10.5194/gmd-14-1237-2021, 2021
Short summary
Short summary
Inverse atmospheric transport modelling is an important tool in several disciplines. However, the specification of atmospheric transport model error remains challenging. In this paper, we employ a state-of-the-art ensemble technique combined with a state-of-the-art Bayesian inference algorithm to infer point sources. Our research helps to fill the gap in our understanding of model error in the context of inverse atmospheric transport modelling.
Qi Tang, Michael J. Prather, Juno Hsu, Daniel J. Ruiz, Philip J. Cameron-Smith, Shaocheng Xie, and Jean-Christophe Golaz
Geosci. Model Dev., 14, 1219–1236, https://doi.org/10.5194/gmd-14-1219-2021, https://doi.org/10.5194/gmd-14-1219-2021, 2021
Basit Khan, Sabine Banzhaf, Edward C. Chan, Renate Forkel, Farah Kanani-Sühring, Klaus Ketelsen, Mona Kurppa, Björn Maronga, Matthias Mauder, Siegfried Raasch, Emmanuele Russo, Martijn Schaap, and Matthias Sühring
Geosci. Model Dev., 14, 1171–1193, https://doi.org/10.5194/gmd-14-1171-2021, https://doi.org/10.5194/gmd-14-1171-2021, 2021
Short summary
Short summary
An atmospheric chemistry model has been implemented in the microscale PALM model system 6.0. This article provides a detailed description of the model, its structure, input requirements, various features and limitations. Several pre-compiled ready-to-use chemical mechanisms are included in the chemistry model code; however, users can also easily implement other mechanisms. A case study is presented to demonstrate the application of the new chemistry model in the urban environment.
Mohsen Moradi, Benjamin Dyer, Amir Nazem, Manoj K. Nambiar, M. Rafsan Nahian, Bruno Bueno, Chris Mackey, Saeran Vasanthakumar, Negin Nazarian, E. Scott Krayenhoff, Leslie K. Norford, and Amir A. Aliabadi
Geosci. Model Dev., 14, 961–984, https://doi.org/10.5194/gmd-14-961-2021, https://doi.org/10.5194/gmd-14-961-2021, 2021
Short summary
Short summary
The Vertical City Weather Generator (VCWG) is an urban microclimate model developed to predict temporal and vertical variation of potential temperature, wind speed, and specific humidity. VCWG is forced by climate variables at a nearby rural site and coupled to radiation and building energy models. VCWG is evaluated against field observations of the BUBBLE campaign. It is run under exploration mode to assess its performance given urban characteristics, seasonal variations, and climate zones.
James Hocking, Jérôme Vidot, Pascal Brunel, Pascale Roquet, Bruna Silveira, Emma Turner, and Cristina Lupu
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-424, https://doi.org/10.5194/gmd-2020-424, 2021
Revised manuscript accepted for GMD
Short summary
Short summary
RTTOV is a fast radiative transfer model for simulating passive satellite-based observations at visible, infra-red and microwave wavelengths. A core part of the model is a parameterisation of the absorption of radiation by the various gases present in the atmosphere. We present a new parameterisation that performs well compared to the existing one in terms of accuracy and can be developed further more easily. The new parameterisation is implemented in the latest release, RTTOV v13.0.
Loredana G. Suciu, Robert J. Griffin, and Caroline A. Masiello
Geosci. Model Dev., 14, 907–921, https://doi.org/10.5194/gmd-14-907-2021, https://doi.org/10.5194/gmd-14-907-2021, 2021
Short summary
Short summary
Understanding the atmospheric degradation of biomass burning tracers such as levoglucosan is essential to decreasing uncertainties in the role of biomass burning in air quality, carbon cycling and paleoclimate. Using a 0-D modeling approach and numerical chamber simulations, we found that the multiphase atmospheric degradation of levoglucosan occurs over timescales of hours to days, can form secondary organic aerosols and affects other key tropospheric gases, such as ozone.
Chihiro Kodama, Tomoki Ohno, Tatsuya Seiki, Hisashi Yashiro, Akira T. Noda, Masuo Nakano, Yohei Yamada, Woosub Roh, Masaki Satoh, Tomoko Nitta, Daisuke Goto, Hiroaki Miura, Tomoe Nasuno, Tomoki Miyakawa, Ying-Wen Chen, and Masato Sugi
Geosci. Model Dev., 14, 795–820, https://doi.org/10.5194/gmd-14-795-2021, https://doi.org/10.5194/gmd-14-795-2021, 2021
Short summary
Short summary
This paper describes the latest stable version of NICAM, a global atmospheric model, developed for high-resolution climate simulations toward the IPCC Assessment Report. Our model explicitly treats convection, clouds, and precipitation and could reduce the uncertainty of climate change projection. A series of test simulations demonstrated improvements (e.g., high cloud) and issues (e.g., low cloud, precipitation pattern), suggesting further necessity for model improvement and higher resolutions.
Jingyu Wang, Jiwen Fan, Robert A. Houze Jr., Stella R. Brodzik, Kai Zhang, Guang J. Zhang, and Po-Lun Ma
Geosci. Model Dev., 14, 719–734, https://doi.org/10.5194/gmd-14-719-2021, https://doi.org/10.5194/gmd-14-719-2021, 2021
Short summary
Short summary
This paper presents an evaluation of the E3SM model against NEXRAD radar observations for the warm seasons during 2014–2016. The COSP forward simulator package is implemented in the model to generate radar reflectivity, and the NEXRAD observations are coarsened to the model resolution for comparison. The model severely underestimates the reflectivity above 4 km. Sensitivity tests on the parameters from cumulus parameterization and cloud microphysics do not improve this model bias.
Lei Zhang, Sunling Gong, Tianliang Zhao, Chunhong Zhou, Yuesi Wang, Jiawei Li, Dongsheng Ji, Jianjun He, Hongli Liu, Ke Gui, Xiaomei Guo, Jinhui Gao, Yunpeng Shan, Hong Wang, Yaqiang Wang, Huizheng Che, and Xiaoye Zhang
Geosci. Model Dev., 14, 703–718, https://doi.org/10.5194/gmd-14-703-2021, https://doi.org/10.5194/gmd-14-703-2021, 2021
Short summary
Short summary
Development of chemical transport models with advanced physics and chemical schemes is important for improving air-quality forecasts. This study develops the chemical module CUACE by updating with a new particle dry deposition scheme and adding heterogenous chemical reactions and couples it with the WRF model. The coupled model (WRF/CUACE) was able to capture well the variations of PM2.5, O3, NO2, and secondary inorganic aerosols in eastern China.
Simon Patrick O'Meara, Shuxuan Xu, David Topping, M. Rami Alfarra, Gerard Capes, Douglas Lowe, Yunqi Shao, and Gordon McFiggans
Geosci. Model Dev., 14, 675–702, https://doi.org/10.5194/gmd-14-675-2021, https://doi.org/10.5194/gmd-14-675-2021, 2021
Short summary
Short summary
User-friendly and open-source software for simulating aerosol chambers is a valuable tool for research scientists in designing and analysing their experiments. This paper describes a new version of such software and will therefore provide a useful reference for those applying it. Central to the paper is an assessment of the software's accuracy through comparison against previously published simulations.
Tamara Emmerichs, Astrid Kerkweg, Huug Ouwersloot, Silvano Fares, Ivan Mammarella, and Domenico Taraborrelli
Geosci. Model Dev., 14, 495–519, https://doi.org/10.5194/gmd-14-495-2021, https://doi.org/10.5194/gmd-14-495-2021, 2021
Short summary
Short summary
Dry deposition to vegetation is a major sink of ground-level ozone. Its parameterization in atmospheric chemistry models represents a significant source of uncertainty for global tropospheric ozone. We extended the current model parameterization with a relevant pathway and important meteorological adjustment factors. The comparison with measurements shows that this enables a more realistic model representation of ozone dry deposition velocity. Globally, annual dry deposition loss increases.
Alexander Ukhov, Ravan Ahmadov, Georg Grell, and Georgiy Stenchikov
Geosci. Model Dev., 14, 473–493, https://doi.org/10.5194/gmd-14-473-2021, https://doi.org/10.5194/gmd-14-473-2021, 2021
Short summary
Short summary
We discuss and evaluate the effects of inconsistencies found in the WRF-Chem code when using the GOCART module. First, PM surface concentrations were miscalculated. Second, dust optical depth was underestimated by 25 %–30 %. Third, an inconsistency in the process of gravitational settling led to the overestimation of dust column loadings by 4 %–6 %, PM10 by 2 %–4 %, and the rate of gravitational dust settling by 5 %–10 %. We also presented diagnostics that can be used to estimate these effects.
Andrew T. Prata, Leonardo Mingari, Arnau Folch, Giovanni Macedonio, and Antonio Costa
Geosci. Model Dev., 14, 409–436, https://doi.org/10.5194/gmd-14-409-2021, https://doi.org/10.5194/gmd-14-409-2021, 2021
Short summary
Short summary
This paper presents FALL3D-8.0, the latest version release of an open-source code with a track record of 15+ years and a growing number of users in the volcanological and atmospheric communities. The code, originally conceived for atmospheric dispersal and deposition of tephra particles, has been extended to model other types of particles, aerosols and radionuclides. This paper details new model applications and validation of FALL3D-8.0 using satellite, ground-deposit load and radionuclide data.
Jian Zhong, Xiaoming Cai, and Zheng-Tong Xie
Geosci. Model Dev., 14, 323–336, https://doi.org/10.5194/gmd-14-323-2021, https://doi.org/10.5194/gmd-14-323-2021, 2021
Short summary
Short summary
A synthetic inflow turbulence generator was implemented in the idealised Weather Research and Forecasting large eddy simulation. The inflow case yielded a mean velocity profile and second-moment profiles that agreed well with those generated using periodic boundary conditions, after a short adjustment distance. This implementation can be extended to a multi-scale seamless nesting simulation from a meso-scale domain with a kilometre-scale resolution to LES domains with metre-scale resolutions.
Han Xiao, Qizhong Wu, Xiaochun Yang, Lanning Wang, and Huaqiong Cheng
Geosci. Model Dev., 14, 223–238, https://doi.org/10.5194/gmd-14-223-2021, https://doi.org/10.5194/gmd-14-223-2021, 2021
Short summary
Short summary
Few studies have investigated the effects of initial conditions on the simulation or prediction of PM2.5 concentrations. Here, sensitivity experiments are used to explore the effects of three initial mechanisms (clean, restart, and continuous) and emissions in Xi’an in December 2016. According to this work, if the restart mechanism cannot be used due to computing resource and storage space limitations when forecasting PM2.5 concentrations, a spin-up time of at least 27 h is needed.
Hsi-Yen Ma, Chen Zhou, Yunyan Zhang, Stephen A. Klein, Mark D. Zelinka, Xue Zheng, Shaocheng Xie, Wei-Ting Chen, and Chien-Ming Wu
Geosci. Model Dev., 14, 73–90, https://doi.org/10.5194/gmd-14-73-2021, https://doi.org/10.5194/gmd-14-73-2021, 2021
Short summary
Short summary
We propose an experimental design of a suite of multi-year, short-term hindcasts and compare them with corresponding observations or measurements for periods based on different weather and climate phenomena. This atypical way of evaluating model performance is particularly useful and beneficial, as these hindcasts can give scientists a robust picture of modeled precipitation, and cloud and radiation processes from their diurnal variation to year-to-year variability.
Peter Kuma, Adrian J. McDonald, Olaf Morgenstern, Richard Querel, Israel Silber, and Connor J. Flynn
Geosci. Model Dev., 14, 43–72, https://doi.org/10.5194/gmd-14-43-2021, https://doi.org/10.5194/gmd-14-43-2021, 2021
Jianglong Zhang, Robert J. D. Spurr, Jeffrey S. Reid, Peng Xian, Peter R. Colarco, James R. Campbell, Edward J. Hyer, and Nancy L. Baker
Geosci. Model Dev., 14, 27–42, https://doi.org/10.5194/gmd-14-27-2021, https://doi.org/10.5194/gmd-14-27-2021, 2021
Short summary
Short summary
A first-of-its-kind scheme has been developed for assimilating Ozone Monitoring Instrument (OMI) aerosol index (AI) measurements into the Naval Aerosol Analysis and Predictive System. Improvements in model simulations demonstrate the utility of OMI AI data assimilation for improving the accuracy of aerosol model analysis over cloudy regions and bright surfaces. This study can be considered one of the first attempts at direct radiance assimilation in the UV spectrum for aerosol analyses.
Felix Kleinert, Lukas H. Leufen, and Martin G. Schultz
Geosci. Model Dev., 14, 1–25, https://doi.org/10.5194/gmd-14-1-2021, https://doi.org/10.5194/gmd-14-1-2021, 2021
Short summary
Short summary
With IntelliO3-ts v1.0, we present an artificial neural network as a new forecasting model for daily aggregated near-surface ozone concentrations with a lead time of up to 4 d. We used measurement and reanalysis data from more than 300 German monitoring stations to train, fine tune, and test the model. We show that the model outperforms standard reference models like persistence models and demonstrate that IntelliO3-ts outperforms climatological reference models for the first 2 d.
Ziyu Huang, Lei Zhong, Yaoming Ma, and Yunfei Fu
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-394, https://doi.org/10.5194/gmd-2020-394, 2020
Revised manuscript accepted for GMD
Short summary
Short summary
Spectral nudging is an effective dynamical downscaling method used to improve precipitation simulations of regional climate models (RCMs). However, the biases of the reference fields over the Tibetan Plateau (TP) would possibly introduce extra biases when spectral nudging is applied. Results show that the precipitation simulations were significantly improved when limiting the application of spectral nudging towards the potential temperature and water vapor mixing ratio over the TP.
Adrien Napoly, Aaron Boone, and Théo Welfringer
Geosci. Model Dev., 13, 6523–6545, https://doi.org/10.5194/gmd-13-6523-2020, https://doi.org/10.5194/gmd-13-6523-2020, 2020
Short summary
Short summary
Accurate modeling of snow impact on surface energy and mass fluxes is required from land surface models. This new version of the SURFEX model improves the representation of the snowpack. In particular, it prevents its ablation from occurring too early in the season, which also leads to better soil temperatures and energy fluxes toward the atmosphere. This was made possible with a more explicit and distinct representation of each layer that constitutes the surface (soil, snow, and vegetation).
Robin J. Hogan and Marco Matricardi
Geosci. Model Dev., 13, 6501–6521, https://doi.org/10.5194/gmd-13-6501-2020, https://doi.org/10.5194/gmd-13-6501-2020, 2020
Short summary
Short summary
A key component of computer models used to predict weather and climate is the radiation scheme, which calculates how solar and infrared radiation heats and cools the atmosphere and surface, including the important role of greenhouse gases. This paper describes the experimental protocol and large datasets for a new project, CKDMIP, to evaluate and improve the accuracy of the treatment of atmospheric gases in the radiation schemes used worldwide, as well as their computational speed.
Xiaoli G. Larsén and Jana Fischereit
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-358, https://doi.org/10.5194/gmd-2020-358, 2020
Revised manuscript accepted for GMD
Short summary
Short summary
For the first time, turbulence kinetic energy (TKE) calculated from the explicit wake parameterization (EWP) in WRF is examined using high frequency measurements over a wind farm, and compared with that calculated using scheme from Fitch et al. (2012). We examined the effect of farm-induced TKE advection in connection with the Fitch scheme. Through the case study with Low Level Jet (LLJ), we analyzed the key features of LLJ and raised the issue of interaction between wind farm and LLJ.
David Simpson, Robert Bergström, Alan Briolat, Hannah Imhof, John Johansson, Michael Priestley, and Alvaro Valdebenito
Geosci. Model Dev., 13, 6447–6465, https://doi.org/10.5194/gmd-13-6447-2020, https://doi.org/10.5194/gmd-13-6447-2020, 2020
Short summary
Short summary
This paper outlines the structure and usage of the GenChem system, which includes a chemical pre-processor (GenChem.py) and a simple box model (boxChem). GenChem provides scripts and input files for converting chemical equations into differential form for use in atmospheric chemical transport models (CTMs) and/or the boxChem system. Although GenChem is primarily intended for users of the EMEP MSC-W CTM and related systems, boxChem can be run as a stand-alone chemical solver.
Benjamin N. Murphy, Christopher G. Nolte, Fahim Sidi, Jesse O. Bash, K. Wyat Appel, Carey Jang, Daiwen Kang, James Kelly, Rohit Mathur, Sergey Napelenok, George Pouliot, and Havala O. T. Pye
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-361, https://doi.org/10.5194/gmd-2020-361, 2020
Revised manuscript accepted for GMD
Short summary
Short summary
The algorithms for applying air pollution emission rates in the Community Multiscale Air Quality (CMAQ) model have been improved to better support users and developers. The new features accommodate emissions perturbation studies that are typical in atmospheric research and output a wealth of metadata for each model run so assumptions can be verified and documented. The new approach dramatically enhances the transparency and functionality of this critical of atmospheric modeling.
Zhiqiang Li, Bingcheng Wan, Yulun Zhou, and Hokit Wong
Geosci. Model Dev., 13, 6349–6360, https://doi.org/10.5194/gmd-13-6349-2020, https://doi.org/10.5194/gmd-13-6349-2020, 2020
Short summary
Short summary
Our results provide evidence of the effects of incoming land surface data quality on the accuracy of high-resolution urban climate simulations and emphasize the importance of the incoming data quality control.
Yihui Zhou, Yi Zhang, Jian Li, Rucong Yu, and Zhuang Liu
Geosci. Model Dev., 13, 6325–6348, https://doi.org/10.5194/gmd-13-6325-2020, https://doi.org/10.5194/gmd-13-6325-2020, 2020
Short summary
Short summary
This paper explores the configuration of a global atmospheric model (global-to-regional integrated forecast system-atmosphere; GRIST-A) with various multiresolution grids. The model performance is evaluated from dry dynamics to simple physics and full physics. The model is able to resolve the fine-scale structures in the grid-refinement region, and the adverse impact due to the mesh transition and the coarse-resolution area can be controlled well.
Bruce Rolstad Denby, Michael Gauss, Peter Wind, Qing Mu, Eivind Grøtting Wærsted, Hilde Fagerli, Alvaro Valdebenito, and Heiko Klein
Geosci. Model Dev., 13, 6303–6323, https://doi.org/10.5194/gmd-13-6303-2020, https://doi.org/10.5194/gmd-13-6303-2020, 2020
Short summary
Short summary
Air pollution is both a local and a global problem. Since measurements cannot be made everywhere, mathematical models are used to calculate air quality over cities or countries. Modelling over countries limits the level of detail of the models. For countries, the level of detail is only a few kilometres, so air quality at kerb sides is not properly represented. The uEMEP model is used together with the regional air quality model EMEP MSC-W to model details down to kerb side for all of Norway.
Yanfei Liang, Zengliang Zang, Dong Liu, Peng Yan, Yiwen Hu, Yan Zhou, and Wei You
Geosci. Model Dev., 13, 6285–6301, https://doi.org/10.5194/gmd-13-6285-2020, https://doi.org/10.5194/gmd-13-6285-2020, 2020
Ebrahim Eslami, Yunsoo Choi, Yannic Lops, Alqamah Sayeed, and Ahmed Khan Salman
Geosci. Model Dev., 13, 6237–6251, https://doi.org/10.5194/gmd-13-6237-2020, https://doi.org/10.5194/gmd-13-6237-2020, 2020
Short summary
Short summary
As using deep learning algorithms has become a popular data analytic technique, atmospheric scientists should have a balanced perception of their strengths and limitations so that they can provide a powerful analysis of complex data with well-established procedures. This study addresses significant limitations of an advanced deep learning algorithm, the convolutional neural network.
Eemeli Holopainen, Harri Kokkola, Anton Laakso, and Thomas Kühn
Geosci. Model Dev., 13, 6215–6235, https://doi.org/10.5194/gmd-13-6215-2020, https://doi.org/10.5194/gmd-13-6215-2020, 2020
Short summary
Short summary
This paper introduces an in-cloud wet deposition scheme for liquid and ice phase clouds for global aerosol–climate models. With the default setup, our wet deposition scheme behaves spuriously and better representation can be achieved with this scheme when black carbon is mixed with soluble compounds at emission time. This work is done as many of the global models fail to reproduce the transport of black carbon to the Arctic, which may be due to the poor representation of wet removal in models.
Luolin Wu, Jian Hang, Xuemei Wang, Min Shao, and Cheng Gong
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-387, https://doi.org/10.5194/gmd-2020-387, 2020
Revised manuscript accepted for GMD
Short summary
Short summary
In order to improve the resolution and numerical accuracy of urban air quality simulation, this study has developed the APFoam-1.0 to examine the micro-scale reactive pollutant formation and dispersion in the urban area. The model has been validated and shows the good agreement with wind tunnel experimental data. Model sensitivity cases reveal that the vehicle emissions, background concentrations and wind conditions are the key factors affecting the photochemical reaction process.
Cited articles
Abdul-Razzak, H. and Ghan, S. J.: A parameterization of aerosol activation 2. Multiple aerosol types, J. Geophys. Res., 105, 6837–6844, https://doi.org/10.1029/1999JD901161, 2000.
Abdul-Razzak, H. and Ghan, S. J.: A parameterization of aerosol activation 3. Sectional representation, J. Geophys. Res., 107, 4026, https://doi.org/10.1029/2001JD000483, 2002.
Albini, F. A.: PROGRAM BURNUP: A simulation model of the burning of large woody natural fuels, final Report on Research Grant INT-92754-GR by U.S.F.S. to Montana State Univ., Mechanical Engineering Dept., 1994.
Albrecht, B. A.: Aerosols, cloud microphysics, and fractional cloudiness, Science, 245, 1227–1230, https://doi.org/10.1126/science.245.4923.1227, 1989.
Albrecht, B. A., Ramanathan, V., and Boville, B. A.: The effects of cumulus moisture transports on the simulation of climate with a general circulation model, J. Atmos. Sci., 43, 2443–2462, 1986.
Alonso, M. F., Longo, K., Freitas, S., Fonseca, R., Marécal,V., Pirre, M., and Klenner, L.: An urban emissions inventory for South America and its application in numerical modeling of atmospheric chemical composition at local and regional scales, Atmos. Environ., 44, 5072–5083, https://doi.org/10.1016/j.atmosenv.2010.09.013, 2010.
Anderson, H. E.: Aids to determining fuel models for estimating fire behavior, USDA Forest Service, Intermountain Forest and Range Experiment Station, Research Report INT-122, 1982.
Andrade, M. F., Ynoue, R. Y., Harley, R., and Miguel, A. H.: Air quality model simulating photochemical formation of pollutants: the São Paulo Metropolitan Area, Brazil, Int. J. Environ. Pollut., 22, 460–475, 2004.
Arakawa, A. and Schubert, W. H.: Interaction of a cumulus cloud ensemble with the large-scale environment. Part I, J. Atmos. Sci., 31, 674–701, 1974.
Arakawa, A., Jung, J.-H., and Wu, C.-M.: Toward unification of the multiscale modeling of the atmosphere, Atmos. Chem. Phys., 11, 3731–3742, https://doi.org/10.5194/acp-11-3731-2011, 2011.
Asselin, R.: Frequency filter for time integrations, Mon. Weather Rev., 100, 487–490, 1972.
Baba, Y. and Takahashi, K.: Weighted essentially non-oscillatory scheme for cloud edge problem, Q. J. Roy. Meteor. Soc., 139, 1374–1388, https://doi.org/10.1002/qj.2030, 2013.
Barker, H. W., Cole, J. N. S., Morcrette, J.-J., Pincus, R., Räisänen, P., von Salzen, K., and Vaillancourt, P.: The Monte Carlo Independent Column Approximation: An assessment using several global atmospheric models, Q. J. Roy. Meteor. Soc., 134, 1463–1478, https://doi.org/10.1002/qj.303, 2008.
Baldauf, M.: Stability analysis for linear discretisations of the advection equation with Runge-Kutta time integration, J. Comput. Phys., 227, 6638–6659, 2008.
Baldauf, M.: Linear stability analysis of Runge-Kutta based partial time-splitting schemes for the Euler equations, Mon. Weather Rev., 138, 4475–4496, 2010.
Bauer, S. E., Wright, D. L., Koch, D., Lewis, E. R., McGraw, R., Chang, L.-S., Schwartz, S. E., and Ruedy, R.: MATRIX (Multiconfiguration Aerosol TRacker of mIXing state): an aerosol microphysical module for global atmospheric models, Atmos. Chem. Phys., 8, 6003–6035, https://doi.org/10.5194/acp-8-6003-2008, 2008.
Bechtold, P., Chaboureau, J. P., Beljaars, A., Betts, A. K., Köhler, M., Miller, M., and Redelsperger, J. L.: The simulation of the diurnal cycle of convection precipitations over land in a global model, Q. J. Roy. Meteor. Soc., 130, 3119–3137, 2004.
Bechtold, P., Köhler, M., Jung, T., Doblas-Reyes, F., Leutbecher, M., Rodwell, M. J., Vitart, F., and Balsamo, G.: Advances in simulating atmospheric variability with the ECMWF model: From synoptic to decadal time-scales, Q. J. Roy. Meteor. Soc., 134, 1337–1351, 2008.
Bechtold, P., Semane, N., Lopez, P., Chaboureau, J.-P., Beljaars, A., and Bormann, N.: Representing equilibrium and nonequilibrium convection in large-scale models, J. Atmos. Sci., 71, 734–753, https://doi.org/10.1175/JAS-D-13-0163.1, 2014.
Bela, M. M., Longo, K. M., Freitas, S. R., Moreira, D. S., Beck, V., Wofsy, S. C., Gerbig, C., Wiedemann, K., Andreae, M. O., and Artaxo, P.: Ozone production and transport over the Amazon Basin during the dry-to-wet and wet-to-dry transition seasons, Atmos. Chem. Phys., 15, 757–782, https://doi.org/10.5194/acp-15-757-2015, 2015.
Beltran-Przekurat, A., Pielke, R. A., Eastman, J. L., and Coughenour, M. B.: Modeling the effects of land-use/land-cover changes on the near-surface atmosphere in southern South America, Int. J. Climatol., 32, 1206–1225, https://doi.org/10.1002/joc.2346, 2011.
Best, M. J., Pryor, M., Clark, D. B., Rooney, G. G., Essery, R. L. H., Ménard, C. B., Edwards, J. M., Hendry, M. A., Porson, A., Gedney, N., Mercado, L. M., Sitch, S., Blyth, E., Boucher, O., Cox, P. M., Grimmond, C. S. B., and Harding, R. J.: The Joint UK Land Environment Simulator (JULES), model description – Part 1: Energy and water fluxes, Geosci. Model Dev., 4, 677–699, https://doi.org/10.5194/gmd-4-677-2011, 2011.
Brian, H. and Prather, M. J.: Fast-J2: Accurate simulation of stratospheric photolysis in global chemistry models, J. Atmos. Chem., 41, 281–296, 2002.
Carvalho, V. S. B.: O impacto das megacidades sobre a qualidade do ar:os casos das regiões metropolitanas de São Paulo e: do Rio de Janeiro. 234 f. Tese de Doutorado – Instituto de Astronomia, Geofísica e Ciências Atmosféricas, Universidade de São Paulo, São Paulo, 2010.
Clark, D. B., Mercado, L. M., Sitch, S., Jones, C. D., Gedney, N., Best, M. J., Pryor, M., Rooney, G. G., Essery, R. L. H., Blyth, E., Boucher, O., Harding, R. J., Huntingford, C., and Cox, P. M.: The Joint UK Land Environment Simulator (JULES), model description – Part 2: Carbon fluxes and vegetation dynamics, Geosci. Model Dev., 4, 701–722, https://doi.org/10.5194/gmd-4-701-2011, 2011.
Clark, T. L., Coen, J. L., and Latham, D.: Description of a coupled atmosphere-fire model, Int. J. Wildland Fire, 13, 49–64, 2004.
Coen, J. L.: Simulation of the Big Elk Fire using coupled atmosphere-fire modeling, Int. J. Wildland Fire, 14, 49–59, 2005.
Costa, S. M. S., Lima, W. F. A., Freitas, S. R., Ceballos, J. C., and Rodrigues, J. V.: Monitoramento dos Traços de Cinzas do Vulcão Chileno Puyehue-Cordón Caulle, in: Congresso Brasileiro De Meteorologia, 17. (CBMET), 2012, Gramado Annals, 1–5, 2012.
Cotton, W. R., Pielke Sr., R. A., Walko, R. L., Liston, G. E., Tremback, C. J., Jiang, H., McAnelly, R. L., Harrington, J. Y., Nicholls, M. E., Carrio, G. G., and McFadden, J. P.: RAMS 2001: Current status and future directions, Meteorol. Atmos. Phys., 82, 5–29, 2003.
Crassier, V., Suhre, K., Tulet, P., and Rosset, R.: Development of a reduced chemical scheme for use in mesoscale meteorological models, Atmos. Environ., 34, 2633–2644, 2000.
Djouad, R., Sportisse, B., and Audiffren, N.: Numerical simulation of aqueous-phase atmospheric models: use of a non-autonomous Rosenbrock method, Atmos. Environ., 36, 873–879, 2002.
Damian, V., Sandu, A., Damian, M., Carmichael, G. R., and Potra, F. A.: KPP – A symbolic preprocessor for chemistry kinetics – User's guide, Technical report, The University of Iowa, IowaCity, IA52246, 1995.
Davies, H. C.: Limitations of some common lateral boundary schemes used in regional NWP models, Mon. Weather Rev., 111, 1002–1012, 1983.
Deardorff, J. W.: Stratocumulus-capped mixed layers derived from a three-dimensional model, Bound.-Lay. Meteorol., 18, 495–527, 1980.
Degrazia, G. A., Anfossi, D., de Campos Velho, H. F., and Ferrero, E.: A Lagrangian Decorrelation Time Scale for Nonhomogeneous Turbulence, Bound.-Lay. Meteorol., 86, 525–534, 1998.
Dos Santos, A. F., Freitas, S. R., de Mattos, J. G. Z., Campos Velho H. F., Gan, M. A., Luz, E. F. P., and Grell, G.: Using the Firefly optimization method to weight the ensemble of rainfall forecasts of the Brazilian developments on the Regional Atmospheric Modeling System (BRAMS), Adv. Geosci., 35, 123–136, https://doi.org/10.5194/adgeo-35-123-2013, 2013.
Eastman, J. L., Coughenour, M. B., and Pielke, R. A.: The effects of CO2 and landscape change using a coupled plant and meteorological model, Glob. Change Biol., 7, 797–815, 2001a.
Eastman, J. L., Coughenour, M. B., and Pielke, R. A.: Does grazing affect regional climate?, J. Hydrometeorol., 2, 243–253, 2001b.
Ebert, E. E. and Curry, J. A.: A parameterization of ice cloud optical properties for climate models, J. Geophys. Res., 97, 3831–3836, 1992.
Eidhammer, T., DeMott, P. J., and Kreidenweis, S. M.: A comparison of heterogeneous ice nucleation parameterizations using a parcel model framework, J. Geophys. Res., 114, D06202, https://doi.org/10.1029/2008JD011095, 2009.
Fazenda, A. L., Panetta, J., Katsurayama, D. M., Rodrigues, L. F., Motta, L. G., and Navaux, P. O. A.: Challenges and solutions to improve the scalability of an operational regional meteorological forecasting model, Int. J. High Perform. S., 3, p. 87, 2011.
Fazenda, A. L., Rodrigues, E. R., Tomita, S. S., Panetta, J., and Mendes, C. L.: Improving the scalability of an operational scientific application on a large multi-core cluster, WSCAD-SSC, 2012.
Feingold, G. and Heymsfield, A. J.: Parameterizations of condensational growth of droplets for use in general circulation models, J. Atmos. Sci., 49, 2325–2342, 1992.
Frank, W. M. and Cohen, C.: Simulation of tropical convective systems, Part I: A cumulus parameterization, J. Atmos. Sci., 44, 3787–3799, 1987.
Freitas, E. D., Martins, L. D., Dias, P. L. D., and Andrade, M. D.: A simple photochemical module implemented in RAMS for tropospheric ozone concentration forecast in the metropolitan area of Sao Paulo, Brazil: Coupling and validation, Atmos. Environ., 39, 6352–6361, 2005.
Freitas, E. D., Rozoff, C. M., Cotton, W. R., and Silva Dias, P. L.: Interactions of an urban heat island and sea breeze circulations during winter over the Metropolitan Area of São Paulo – Brazil, Bound.-Lay. Meteorol., 122, 43–65, 2007.
Freitas, S. R., Longo, K. M., Silva Dias, M. A. F., and Artaxo, P.: Numerical modeling of air mass trajectories from biomass burning areas of the Amazon basin, Anais da Academia Brasileira de Ciências, Brasil, 68, 193–296, 1996.
Freitas, S. R., Dias, M. A. F. S., Dias, P. L. S., Longo, K. M., Artaxo, P., Andreae, M. O., and Fischer, H.: A convective kinematic trajectory technique for low-resolution atmospheric models, J. Geophys. Res., 105, 24375–24386, 2000.
Freitas, S. R., Longo, K. M., Silva Dias, M., Silva Dias, P., Chatfield, R., Prins, E., Artaxo, P., Grell, G., and Recuero, F.: Monitoring the transport of biomass burning emissions in South America, Environ. Fluid Mech., 5, 135–167, https://doi.org/10.1007/s10652-005-0243-7, 2005.
Freitas, S. R., Longo, K. M., and Andreae, M. O.: Impact of including the plume rise of vegetation fires in numerical simulations of associated atmospheric pollutants, Geophys. Res. Lett., 33, L17808, https://doi.org/10.1029/2006GL026608, 2006.
Freitas, S. R., Longo, K. M., Silva Dias, M. A. F., Chatfield, R., Silva Dias, P., Artaxo, P., Andreae, M. O., Grell, G., Rodrigues, L. F., Fazenda, A., and Panetta, J.: The Coupled Aerosol and Tracer Transport model to the Brazilian developments on the Regional Atmospheric Modeling System (CATT-BRAMS) – Part 1: Model description and evaluation, Atmos. Chem. Phys., 9, 2843–2861, https://doi.org/10.5194/acp-9-2843-2009, 2009.
Freitas, S. R., Longo, K. M., Trentmann, J., and Latham, D.: Technical Note: Sensitivity of 1-D smoke plume rise models to the inclusion of environmental wind drag, Atmos. Chem. Phys., 10, 585–594, https://doi.org/10.5194/acp-10-585-2010, 2010.
Freitas, S. R., Longo, K. M., Alonso, M. F., Pirre, M., Marecal, V., Grell, G., Stockler, R., Mello, R. F., and Sánchez Gácita, M.: PREP-CHEM-SRC – 1.0: a preprocessor of trace gas and aerosol emission fields for regional and global atmospheric chemistry models, Geosci. Model Dev., 4, 419–433, https://doi.org/10.5194/gmd-4-419-2011, 2011.
Freitas, S. R., Rodrigues, L. F., Longo, K. M., and Panetta, J.: Impact of a monotonic advection scheme with low numerical diffusion on transport modeling of emissions from biomass burning, J. Adv. Model. Earth Syst., 4, M01001, https://doi.org/10.1029/2011MS000084, 2012.
Gerbig, C., Lin, J. C., Wofsy, S. C., Daube, B. C., Andrews, A. E., Stephens, B. B., Bakwin, P. S., and Grainger, C. A.: Toward constraining regional-scale fluxes of CO2 with atmospheric observations over a continent: 1. Observed spatial variability from airborne platforms, J. Geophys. Res.-Atmos., 108, 4756, https://doi.org/10.1029/2002JD003018, 2003.
Gevaerd, R. and Freitas, S. R.: Estimativa operacional da umidade do solo para inicialização de modelos de previsão numérica da atmosfera. Parte I: Descrição da metodologia e validação, Rev. Bras. Meteorol., 21, 1–15, 2006.
Grell, G. A.: Prognostic evaluation of assumptions used by cumulus parameterizations within a generalized framework, Mon. Weather Rev., 121, 764–787, 1993.
Grell, G. A. and Devenyi, D.: A generalized approach to parameterizing convection combining ensemble and data assimilation techniques, Geophys. Res. Lett., 29, 38-1, https://doi.org/10.1029/2002GL015311, 2002.
Grell, G. A. and Freitas, S. R.: A scale and aerosol aware stochastic convective parameterization for weather and air quality modeling, Atmos. Chem. Phys., 14, 5233–5250, https://doi.org/10.5194/acp-14-5233-2014, 2014.
Grell, G. A., Peckham, S., McKeen, S., Schmitz, R., Frost, G., Skamarock, W. C., and Eder, B.: Fully coupled “online” chemistry within the WRF model, Atmos. Environ., 39, 6957–6975, 2005.
Hack, J. J., Boville, B. A., Briegleb, B. P., Kiehl, J. T., Rasch, P. J., and Williamson, D. L.: Description of the NCAR Community Climate Model (CCM2), NCAR Technical Note, NCAR/TN-382+STR, 1993.
Hamill, T. M.: Hypothesis Tests for Evaluating Numerical Precipitation Forecasts, Weather Forecast., 14, 155–167, 1999.
Hanna, S.: Applications in Air Pollution Modeling, in: Atmospheric Turbulence and Air Pollution Modelling, edited by: Nieuwstadt, F. and van Dop, H., vol. 1 of Atmospheric Sciences Library, chap. 7 275–310, Springer Netherlands, https://doi.org/10.1007/978-94-010-9112-1_7, 1982.
Helfand, H. M. and Labraga, J. C.: Design of a Nonsingular Level 2.5 Second-Order Closure Model for the Prediction of Atmospheric Turbulence, J. Atmos. Sci., 45, 113–132, 1988.
Hill, G. E.: Factors Controlling the Size and Spacing of Cumulus Clouds as Revealed by Numerical Experiments, J. Atmos. Sci., 31, 646–673, 1974.
Holben, B. N., Eck, T. F., Slutsker, I., Tanreé, D., Buis, J. P., Setzer, A., Vermote, E., Reagan, J. A., Kaufman, Y. J., Nakajima, T., Lavenu, F., Jankowiak, I., and Smirnov, A.: AERONET – a federated instrument network and data archive for aerosol characterization, Remote Sens. Environ., 66, 1–16, https://doi.org/10.1016/s0034-4257(98)00031-5, 1998.
Hu, Y. X. and Stamnes, K.: An accurate parameterization of the radiative properties of water clouds suitable for use in climate models, J. Climate, 6, 728–742, 1993.
Huffman, G. J., Adler, R. F., Bolvin, D. T., Gu, G. J., Nelkin, E. J., Bowman, K. P., Hong, Y., Stocker, E. F., and Wolff, D. B.: The TRMM multi-satellite precipitation analysis (TMPA): Quasi-global, multiyear, combined-sensor precipitation estimates at fine scales, J. Hydrometeorol., 8, 38–55, 2007.
Iacono, M. J., Delamere, J. S., Mlawer, E. J., Shephard, M. W., Clough, S. A., and Collins, W. D.: Radiative forcing by long-lived greenhouse gases: Calculations with the AER radiative transfer models, J. Geophys. Res., 113, D13103, https://doi.org/10.1029/2008JD009944, 2008.
Jakob, C. and Siebesma, A. P.: A new subcloud model for mass-flux convection schemes: influence on triggering, updrafts properties, and model climate, Mon. Weather Rev., 131, 2765–2778, 2003.
Janjić, Z.: Nonsingular implementation of the Mellor-Yamada Level 2.5 Scheme in the NCEP Meso model, Office note 437, National Center for Environmental Prediction, Boulder, CO, available at: http://www.lib.ncep.noaa.gov/ncepofficenotes/2000s/ (last access: 10 January 2017), 2001.
Johansson, E., Spangenberg, J., Gouvêa, M. L., and Freitas, E. D.: Scale-integrated atmospheric simulations to assess thermal comfort in different urban tissues in the warm humid summer of São Paulo, Brazil, Urban Climate, 6, 24–43, 2013.
Kain, J. S. and Fritsch, J. M.: The role of the convective “trigger function” in numerical forecasts of mesoscale convective systems, Meteorol. Atmos. Phys., 49, 93–106, 1992.
Khan, S. and Simpson, R.: Effect of a heat island on the meteorology of a complex urban airshed, Bound.-Lay. Meteorol., 100, 487–506, 2001.
Kiehl, J. T., Hack, J. J., Bonan, G. B., Boville, B. A., Williamson, D. L., and Rasch, P. L.: The National Center for Atmospheric Research Community Climate Model: CCM3, J. Climate, 11, 1131–1149, 1998.
Klein, S. A. and Hartmann, D. L.: The seasonal cycle of low stratiform clouds, J. Climate, 6, 1588–1606, 1993.
Klemp, J. B. and Wilhelmson, R. B.: The Simulation of Three-Dimensional Convective Storm Dynamics, J. Atmos. Sci., 35, 1070–1096, 1978.
Krishnamurti, T. N., Low-Nam, S., and Pasch, R.: Cumulus parameterizations and rainfall rates II, Mon. Weather Rev., 111, 815–828, 1983.
Krol, M., Houweling, S., Bregman, B., van den Broek, M., Segers, A., van Velthoven, P., Peters, W., Dentener, F., and Bergamaschi, P.: The two-way nested global chemistry-transport zoom model TM5: algorithm and applications, Atmos. Chem. Phys., 5, 417–432, https://doi.org/10.5194/acp-5-417-2005, 2005.
Lin, J. C., Gerbig, C., Wofsy, S. C., Andrews, A. E., Daube, B. C., Davis, K. J., and Grainger, C. A.: A near-field tool for simulating the upstream influence of atmospheric observations: The Stochastic Time-Inverted Lagrangian Transport (STILT) model, J. Geophys. Res.-Atmos., 108, 4493, https://doi.org/10.1029/2002JD003161, 2003.
Liu, Y., Daum, P. H., Guo, H., and Peng, Y.: Dispersion bias, dispersion effect, and the aerosol-cloud conundrum. Environ. Res. Lett., 3, 045021, https://doi.org/10.1088/1748-9326/3/4/045021, 2008.
Lilly, D. K.: On the numerical simulation of buoyant convection, Tellus, 14, 148–172, https://doi.org/10.1111/j.2153-3490.1962.tb00128.x, 1962.
Longo, K. M., Freitas, S. R., Andreae, M. O., Setzer, A., Prins, E., and Artaxo, P.: The Coupled Aerosol and Tracer Transport model to the Brazilian developments on the Regional Atmospheric Modeling System (CATT-BRAMS) – Part 2: Model sensitivity to the biomass burning inventories, Atmos. Chem. Phys., 10, 5785–5795, https://doi.org/10.5194/acp-10-5785-2010, 2010.
Longo, K. M., Freitas, S. R., Pirre, M., Marécal, V., Rodrigues, L. F., Panetta, J., Alonso, M. F., Rosário, N. E., Moreira, D. S., Gácita, M. S., Arteta, J., Fonseca, R., Stockler, R., Katsurayama, D. M., Fazenda, A., and Bela, M.: The Chemistry CATT-BRAMS model (CCATT-BRAMS 4.5): a regional atmospheric model system for integrated air quality and weather forecasting and research, Geosci. Model Dev., 6, 1389–1405, https://doi.org/10.5194/gmd-6-1389-2013, 2013.
Lu, L., Pielke, R. A., Liston, G. E., Parton, W. J., Ojima, D., and Hartman, M.: Implementation of a two-way interactive atmospheric and ecological model and its application to the central United States, J. Climate, 14, 900–919, 2001.
Lyons, W. A., Pielke, R. A., Tremback, C. J., Walko, R. L., Moon, D. A., and Keen, C. S.: Modeling the impacts of mesoscale vertical motions upon coastal zone air pollution dispersion, Atmos. Environ., 29, 283–301, 1995.
Madronich, S.: Photodissociation in the atmosphere: 1. Actinic flux and the effect of ground reflections and clouds, J. Geophys. Res., 92, 9740–9752, https://doi.org/10.1029/JD092iD08p09740, 1989.
Mandel, J., Beezley, J. D., Coen, J. L., and Kim, M.: Data assimilation for wildland fires: Ensemble Kalman filters in coupled atmosphere-surface models, IEEE Contr. Syst. Mag., 29, 47–65, https://doi.org/10.1109/MCS.2009.932224, 2009.
Mandel, J., Beezley, J. D., and Kochanski, A. K.: Coupled atmosphere-wildland fire modeling with WRF 3.3 and SFIRE 2011, Geosci. Model Dev., 4, 591–610, https://doi.org/10.5194/gmd-4-591-2011, 2011.
Masson, V.: A physically-based scheme for the urban energy budget in atmospheric models, Bound.-Lay. Meteorol., 94, 357–397, 2000.
Mastin, L., Guffanti, M., Servranckx, R., Webley, P., Barsotti, S., Dean, K., Durant, A., Ewert, J., Neri, A., and Rose, W.: A multidisciplinary effort to assign realistic source parameters to models of volcanic ash-cloud transport and dispersion during eruptions, J. Volcanol. Geoth. Res., 186, 10–21, 2009.
McKain, K., Down, A., Raciti, S. M., Budney, J., Hutyra, L. R., Floerchinger, C., Herndon, S. C., Nehrkorn, T., Zahniser, M. S., Jackson, R. B., Phillips, N., and Wofsy, S. C.: Methane emissions from natural gas infrastructure and use in the urban region of Boston, Massachusetts, P. Natl. Acad. Sci. USA, 112, 1941–1946, https://doi.org/10.1073/pnas.1416261112, 2015.
Medvigy, D., Moorcroft, P. R., Avissar, R., and Walko, R. L.: Mass conservation and atmospheric dynamics in the Regional Atmospheric Modeling System (RAMS), Environ. Fluid Mech., 5, 109–134, https://doi.org/10.1007/s10652-005-5275-5, 2005.
Mellor, G. L. and Yamada, T.: Development of a turbulence closure model for geophysical fluid problems, Rev. Geophys. Space Phys., 20, 851–875, https://doi.org/10.1029/RG020i004p00851, 1982.
Menezes, I. C.: Construção de um modelo de interacção atmosfera/fogo aplicado à gestão florestal e avaliação de risco de fogos florestais no Alentejo, PhD thesis, University of Évora, Portugal, 2015.
Meyers, M. P., Walko, R. L., Harrington, J. Y., and Cotton, W. R.: New RAMS cloud microphysics parameterization: Part II. The two-moment scheme, Atmos. Res., 45, 3–39, 1997.
Miller, S. M., Matross, D. M., Andrews, A. E., Millet, D. B., Longo, M., Gottlieb, E. W., Hirsch, A. I., Gerbig, C., Lin, J. C., Daube, B. C., Hudman, R. C., Dias, P. L. S., Chow, V. Y., and Wofsy, S. C.: Sources of carbon monoxide and formaldehyde in North America determined from high-resolution atmospheric data, Atmos. Chem. Phys., 8, 7673–7696, https://doi.org/10.5194/acp-8-7673-2008, 2008.
Miller, S. M., Wofsy, S. C., Michalak, A. M., Kort, E. A., Andrews, A. E., Biraud, S. C., Dlugokencky, E. J., Eluszkiewicz, J., Fischer, M. L., Janssens-Maenhout, G., Miller, B. R., Miller, J. B., Montzka, S. A., Nehrkorn, T., and Sweeney, C.: Anthropogenic emissions of methane in the United States, P. Natl. Acad. Sci. USA, 110, 20018–20022, https://doi.org/10.1073/pnas.1314392110, 2013.
Mlawer, E. J., Taubman, S. J., Brown, P. D., Iacono, M. J., and Clough, S. A.: Radiative transfer for inhomogeneous atmosphere: RRTM a validated correlated-k model for the longwave, J. Geophys. Res., 102, 16663–16682, 1997.
Moreira, D. S., Freitas, S. R., Bonatti, J. P., Mercado, L. M., Rosário, N. M. É., Longo, K. M., Miller, J. B., Gloor, M., and Gatti, L. V.: Coupling between the JULES land-surface scheme and the CCATT-BRAMS atmospheric chemistry model (JULES-CCATT-BRAMS1.0): applications to numerical weather forecasting and the CO2 budget in South America, Geosci. Model Dev., 6, 1243–1259, https://doi.org/10.5194/gmd-6-1243-2013, 2013.
Nair, K. N., Freitas, E. D., Sánchez-Ccoyllo, O. R., Silva Dias M. A. F., Silva Dias, P. L., Andrade, M. F., and Massambani, O.: Dynamics of urban boundary layer over Sao Paulo associated with mesoscale processes, Meteorol. Atmos. Phys., 86, 87–98, 2004.
Nakanishi, M. and Niino, H.: An Improved Mellor–Yamada Level-3 Model with Condensation Physics: Its Design and Verification, Bound.-Lay. Meteorol., 112, 1–31, https://doi.org/10.1023/B:BOUN.0000020164.04146.98, 2004.
Nakanishi, M. and Niino, H.: An Improved Mellor–Yamada Level-3 Model: Its Numerical Stability and Application to a Regional Prediction of Advection Fog, Bound.-Lay. Meteorol., 119, 397–407, https://doi.org/10.1007/s10546-005-9030-8, 2006.
Nehrkorn, T., Eluszkiewicz, J., Wofsy, S. C., Lin, J. C., Gerbig, C., Longo, M., and Freitas, S.: Coupled weather research and forecasting–stochastic time-inverted lagrangian transport (WRF–STILT) model, Meteorol. Atmos. Phys., 107, 51–64, https://doi.org/10.1007/s00703-010-0068-x, 2010.
Pavani, C. A. B.: Modelagem numérica do transporte de emissões vulcânicas: caso do vulcão Puyehue, 184 pp., (sid.inpe.br/mtc-m18/2014/01.20.11.25-TDI), Dissertation (Master in Meteorology) – Instituto Nacional de Pesquisas Espaciais (INPE), São José dos Campos, 2014, available at: http://urlib.net/8JMKD3MGP8W/3FJUGQ8, last access: 27 May 2014.
Pavanni, C., Freitas, S. R., Lima, W. F. A., Costa, S. M. S., Rosario, N. M., Moreira, D. S., and Yoshida, M. C.: Incluindo funcionalidades no modelo BRAMS para simular o transporte de cinzas vulcânicas: descrição e análise de sensibilidade aplicada ao evento eruptivo do Puyehue em 2011, Revista Brasileira de Meteorologia, 31(4), 377–393, https://doi.org/10.1590/0102-778631231420150035, 2016.
Petters, M. D. and Kreidenweis, S. M.: A single parameter representation of hygroscopic growth and cloud condensation nucleus activity, Atmos. Chem. Phys., 7, 1961–1971, https://doi.org/10.5194/acp-7-1961-2007, 2007.
Pielke, R. A.: Mesoscale meteorological modeling, 3rd Edn., Academic Press, San Diego, CA, 2013.
Pielke, R. A. and Uliasz, M.: Use of meteorological models as input to regional and mesoscale air quality models – Limitations and strengths. Atmos. Environ., 32, 1455–1466, 1998.
Pielke, R. A., Cotton, W. R., Walko, R. L., Tremback, C. J., Lyons, W. A., Grasso, L. D., Nicholls, M. E., Moran, M. D., Wesley, D. A., Lee, T. J., and Copeland, J. H.: A comprehensive meteorological modeling system – RAMS, Meteorol. Atmos. Phys., 49, 69–91, 1992.
Pincus, R. and Baker, M. B.: Effect of precipitation on the albedo susceptibility of clouds in the marine boundary layer, Nature, 372, 250–252, 1994.
Pincus, R., Barker, H. R., and Morcrette, J.-J.: A fast, flexible, approximate technique for computing radiative transfer in inhomogeneous cloud fields, J. Geophys. Res., 108, 4376, https://doi.org/10.1029/2002JD003322, 2003.
Procopio, A. S., Remer, L. A., Artaxo, P., Kaufman, Y. J., and Holben, B. N.: Modeled spectral optical properties for smoke aerosols in Amazonia, Geophys. Res. Lett., 30, 2265, https://doi.org/10.1029/2003gl018063, 2003.
RAMS: The Regional Atmospheric Modeling System: Technical Description (Draft), Technical report, ATMET, Fort Collins, CO, USA, available at: http://www.atmet.com/html/docs/ documentation.shtml (last access: 10 January 2017), 2003.
Rasch, P. J. and Kristjansson, J. E.: A comparison of the CCM3 model climate using diagnosed and predicted condensate parameterizations, J. Climate, 11, 1587–1614, 1998.
Rennó, N. O. and Ingersoll, A. P.: Natural convection as a heat engine: A theory for CAPE, J. Atmos. Sci., 53, 572–585, 1996.
Reynolds, R. W., Rayner, N. A., Smith, T. M., Stokes, D. C., and Wang, W.: An Improved In Situ and Satellite SST Analysis for Climate, J. Climate, 15, 1609–1625, 2002.
Rosário, N. E., Longo, K. M., Freitas, S. R., Yamasoe, M. A., and Fonseca, R. M.: Modeling the South American regional smoke plume: aerosol optical depth variability and surface shortwave flux perturbation, Atmos. Chem. Phys., 13, 2923–2938, https://doi.org/10.5194/acp-13-2923-2013, 2013.
Saleeby, S. M. and Cotton, W. R.: A large-droplet mode and prognostic number concentration of cloud droplets in the Colorado State University Regional Atmospheric Modeling System (RAMS). Part I: Module descriptions and supercell test simulations, J. Appl. Meteorol., 43, 182–195, 2004.
Saleeby, S. M. and Cotton, W. R.: A Binned Approach to Cloud-Droplet Riming Implemented in a Bulk Microphysics Model, J. Appl. Meteorol., 47, 694–703, 2008.
Sánchez Gácita, M., Longo, K. M., Freire, J. L. M., Freitas, S. R., and Martin, S. T.: Impact of mixing state and hygroscopicity on CCN activity of biomass burning aerosol in Amazonia, Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2016-248, in review, 2016.
Santos, A. F.: Inverse problems using the optimization method firefly applied in the precipitation parameterization of the model brams over South America. PhD thesis– National Institute for Space Research (INPE), São José dos Campos, 2014 (in Portuguese).
Santos e Silva, C. M., Gielow, R., and Freitas, S. R.: Diurnal and semidiurnal rainfall cycles during the rain season in SW Amazonia, observed via rain gauges and estimated using S-band radar, Atmos. Sci. Lett., 10, 87–93, https://doi.org/10.1002/asl.214, 2009.
Santos e Silva, C. M., Freitas, S. R., and Gielow, R.: Numerical simulation of the diurnal cycle of rainfall in SW Amazon basin during the 1999 rainy season: the role of convective trigger function, Theor. Appl. Climatol., 109, 473–483, 2012.
Savijärvi, H.: Shortwave optical properties of rain, Tellus, 49a, 177–181, 1997.
Savijärvi, H. and Raisanen, P.: Long-wave optical properties of water clouds and rain, Tellus, 50A, 1–11, 1998.
Savijärvi, H., Arola, A., and Räisänen, P.: Short-wave optical properties of precipitating water clouds, Q. J. Roy. Meteor. Soc., 123, 883–899, https://doi.org/10.1002/qj.49712354005, 1997.
Sestini, M. F., Reimer, E. S., Valeriano, D. M., Alvalá, R. C. S., Mello, E. M. K., Chan, C. S., and Nobre, C. A.: Mapa de cobertura da terra da Amazônia legal para uso em modelos meteorológicos, in: Anais do Simpósio Brasileiro de Sensoriamento Remoto, 11, Belo Horizonte, 2901–2906, 2003 (in Portuguese).
Skamarock, W. C.: Positive-definite and monotonic limiters for unrestricted-time-step transport schemes, Mon. Weather Rev., 134, 2241–2250, 2006.
Skamarock, W. C. and Klemp, J. B.: A time-split non-hydrostatic atmospheric model for weather research and forecasting applications, J. Comput. Phys., 227, 3465–3485, https://doi.org/10.1016/j.jcp.2007.01.037, 2008.
Skamarock, W. C., Klemp, J. B., Duda, M. G., Fowler, L. D., Park, S. H., and Ringler, T. D.: A multi-scale non-hydrostatic atmospheric model using centroidal Voronoi tesselations and C-grid staggering, Mon. Weather Rev., 240, 3090–3105, 2012.
Slingo, J. M.: The development and verifcation of a cloud prediction scheme for the ECMWF model, Q. J. Roy. Meteor. Soc., 113, 899–927, 1987.
Smagorinsky, J.: General circulation experiments with the primitive equations, Mon. Weather Rev., 91, 99–164, https://doi.org/10.1175/1520-0493(1963)091<0099:GCEWTP>2.3.CO,2, 1963.
Souto, R. P., Silva Dias, P. L., and Vigilant, F.: Parallel Performance Analysis of a Regional Numerical Weather Prediction Model in a Petascale Machine, in: High Performance Computing, Communications in Computer and Information Science, 565, 146–150, 2015.
Souza, E. P.: Theoretical and numerical study of the relationship between convection and heterogeneous surfaces in the Amazon region, 121 pp., PhD Dissertation – University of São Paulo, São Paulo, 1999 (in Portuguese).
Stockwell, W. R., Kirchner, F., and Kuhn, M.: A new mechanism for regional chemistry modeling, J. Geophys. Res., 102, 25847–25879, 1997.
Stuefer, M., Freitas, S. R., Grell, G., Webley, P., Peckham, S., McKeen, S. A., and Egan, S. D.: Inclusion of ash and SO2 emissions from volcanic eruptions in WRF-Chem: development and some applications, Geosci. Model Dev., 6, 457–468, https://doi.org/10.5194/gmd-6-457-2013, 2013.
Stull, R. B.: An introduction to boundary layer meteorology, Kluwer Academic Publishers, Dordrecht, Netherlands, 1988.
Sun, Z. and Shine, K. P.: Studies of the radiative properties of ice and mixed-phase clouds, Q. J. Roy. Meteor. Soc., 120, 111–137, https://doi.org/10.1002/qj.49712051508, 1994.
Thompson, G. and Eidhammer, T.: A study of aerosol impacts on clouds and precipitation development in a large winter cyclone, J. Atmos. Sci., 71, 3636–3658, https://doi.org/10.1175/JAS-D-13-0305, 2014.
Thompson, G., Field, P. R., Rasmussen, R. M., and Hall, W. D.: Explicit forecasts of winter precipitation using an improved bulk microphysics scheme. Part II: Implementation of a new snow parameterization, Mon. Weather Rev., 136, 5095–5115, https://doi.org/10.1175/2008MWR2387.1, 2008.
Tie, X., Madronich, S., Walters, S., Zhang, R., Rasch, P., and Collins, W.: Effects of clouds on photolysis and oxydants in the troposphere, J. Geophys. Res., 108, 1–25, 2003.
Toon, O. B., McKay, C. P., Ackerman, T. P., and Santhanam, K.: Rapid Calculation of Radiative Heating Rates and Photodissociation Rates in Inhomogeneous Multiple Scattering Atmospheres, J. Geophys. Res., 94, 16287–16301, https://doi.org/10.1029/JD094iD13p16287, 1989.
Tremback, C., Powell, J., Cotton, W., and Pielke, R.: The forward-in-time upstream advection scheme: Extension to higher orders, Mon. Weather Rev., 115, 540–555, 1987.
Tremback, C. J.: Numerical simulation of a mesoscale convective complex: model development and numerical results. Ph.D. dissertation, Atmos. Sci. Paper No. 465, Department of Atmospheric Science, Colorado State University, Fort Collins, CO 80523, 247 pp., 1990.
Tripoli, G. J. and Cotton, W. R.: The Colorado State University three-dimensional cloud/mesoscale model. Part I: General theoretical framework and sensitivity experiments, J. Rech. Atmos., 16, 185–220, 1982.
Twomey, S.: Pollution and the planetary albedo, Atmos. Environ., 8, 1251–1256, https://doi.org/10.1016/0004-6981(74)90004-3, 1974.
Vogel, B., Vogel, H., Bäumer, D., Bangert, M., Lundgren, K., Rinke, R., and Stanelle, T.: The comprehensive model system COSMO-ART – Radiative impact of aerosol on the state of the atmosphere on the regional scale, Atmos. Chem. Phys., 9, 8661–8680, https://doi.org/10.5194/acp-9-8661-2009, 2009.
Vogelezang, D. and Holtslag, A.: Evaluation and model impacts of alternative boundary-layer height formulations, Bound.-Lay. Meteorol., 81, 245–269, https://doi.org/10.1007/BF02430331, 1996.
Walcek, C. J.: Minor flux adjustment near mixing ratio extremes for simplified yet highly accurate monotonic calculation of tracer advection, J. Geophys. Res., 105, 9335–9348, https://doi.org/10.1029/1999JD901142, 2000.
Walko, R. L., Cotton, W. R., Harrington, J. L., and Meyers, M. P.: New RAMS cloud microphysics parameterization. Part I: The single-moment scheme, Atmos. Res., 38, 29–62, 1995a.
Walko, R. L., Tremback, C. J., Pielke, R. A., and Cotton, W. R.: An interactive nesting algorithm for stretched grids and variable nesting ratios, J. Appl. Meteor., 34, 994–999, 1995b.
Walko, R., Band, L., Baron, J., Kittel, F., Lammers, R., Lee, T., Ojima, D., Pielke, R., Taylor, C., Tague, C., Tremback, C., and Vidale, P.: Coupled atmosphere-biophysics- hydrology models for environmental modeling, J. Appl. Meteorol., 39, 931–944, 2000.
Wicker, L. J. and Skamarock, W. C.: A time-splitting scheme for the elastic equations incorporating second-order Runge-Kutta time differencing, Mon. Weather Rev., 126, 1992–1999, 1998.
Wicker, L. J.: A two-step Adams-Bashforth-Moulton split-explicit integrator for compressible atmospheric models, Mon. Weather Rev., 137, 3588–3595, 2009.
Wicker, L. J. and Skamarock, W. C.: Time-splitting methods for elastic models using forward time schemes, Mon. Weather Rev., 130, 2088–2097, 2002.
Wild, O., Zhu, X., and Prather, M. J.: Fast-J: accurate simulation of in and below cloud photolysis in tropospheric chemical models, J. Atmos. Chem., 37, 245–282, 2000.
Wilde, N. P., Stull, R. B., and Eloranta, E. W.: The LCL zone and cumulus onset, J. Clim. Appl. Meteor., 24, 640–657, 1985.
Williams, P. D.: A proposed modification to the Robert-Asselin time filter, Mon. Weather Rev., 137, 2538–2546, 2009.
Wyser, K. and Yang, P.: Average ice crystal size and bulk single-scattering properties of cirrus clouds, Atmos. Res., 49, 315–335, 1989.
Xiang, B., Miller, S. M., Kort, E. A., Santoni, G. W., Daube, B. C., Commane, R., Angevine, W. M., Ryerson, T. B., Trainer, M. K., Andrews, A. E., Nehrkorn, T., Tian, H., and Wofsy, S. C.: Nitrous oxide (N2O) emissions from California based on 2010 CalNex airborne measurements, J. Geophys. Res.-Atmos., 118, 2809–2820, https://doi.org/10.1002/jgrd.50189, 2013.
Xu, K.-M. and Krueger, S. K.: Evaluation of cloudiness parameterizations using a cumulus ensemble model, Mon. Weather Rev., 119, 342–367, 1991.
Xu, K.-M. and Randall, D.A.: A semiempirical cloudiness parameterization for use in climate models, J. Atmos. Sci., 53, 3084–3102, 1996.
Yang, X.-S.: Nature-Inspired Metaheuristic Algorithms, Luviner Press, 2008.
Yarwood, G., Rao, S., Yocke, M., and Whitten, G. Z.: Updates to the Carbon Bond chemical mechanism: CB05, Final Report to the US EPA, RT-0400675, Novato, CA, available at: http://www.camx.com/publ/pdfs/cb05_final_report_120805.pdf (last access: 10 January 2017), 2005.
Special issue
Short summary
We present a new version of the Brazilian developments on the Regional Atmospheric Modeling System (BRAMS) where different previous versions for weather, chemistry, and the carbon cycle were unified in a single harmonized software system. This version also has a new set of state-of-the-art physical parametrizations and higher computational parallel and memory usage efficiency. BRAMS has been applied for research and operational weather and air quality forecasting, largely in South America.
We present a new version of the Brazilian developments on the Regional Atmospheric Modeling...
