Articles | Volume 9, issue 2
Geosci. Model Dev., 9, 899–914, 2016
https://doi.org/10.5194/gmd-9-899-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Geosci. Model Dev., 9, 899–914, 2016
https://doi.org/10.5194/gmd-9-899-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper 01 Mar 2016
Model description paper | 01 Mar 2016
UManSysProp v1.0: an online and open-source facility for molecular property prediction and atmospheric aerosol calculations
David Topping et al.
Related authors
Langwen Huang and David Topping
Geosci. Model Dev., 14, 2187–2203, https://doi.org/10.5194/gmd-14-2187-2021, https://doi.org/10.5194/gmd-14-2187-2021, 2021
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As our knowledge and understanding of atmospheric aerosol particle evolution and impact grows, designing community mechanistic models requires an ability to capture increasing chemical, physical and therefore numerical complexity. As the landscape of computing software and hardware evolves, it is important to profile the usefulness of emerging platforms in tackling this complexity. With this in mind we present JlBox v1.1, written in Julia.
Simon Patrick O'Meara, Shuxuan Xu, David Topping, M. Rami Alfarra, Gerard Capes, Douglas Lowe, Yunqi Shao, and Gordon McFiggans
Geosci. Model Dev., 14, 675–702, https://doi.org/10.5194/gmd-14-675-2021, https://doi.org/10.5194/gmd-14-675-2021, 2021
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User-friendly and open-source software for simulating aerosol chambers is a valuable tool for research scientists in designing and analysing their experiments. This paper describes a new version of such software and will therefore provide a useful reference for those applying it. Central to the paper is an assessment of the software's accuracy through comparison against previously published simulations.
Douglas Morrison, Ian Crawford, Nicholas Marsden, Michael Flynn, Katie Read, Luis Neves, Virginia Foot, Paul Kaye, Warren Stanley, Hugh Coe, David Topping, and Martin Gallagher
Atmos. Chem. Phys., 20, 14473–14490, https://doi.org/10.5194/acp-20-14473-2020, https://doi.org/10.5194/acp-20-14473-2020, 2020
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We provide conservative estimates of the concentrations of bacteria within transatlantic dust clouds, originating from the African continent. We observe significant seasonal differences in the overall concentrations of particles but no seasonal variation in the ratio between bacteria and dust. With bacteria contributing to ice formation at warmer temperatures than dust, our observations should improve the accuracy of climate models.
David Topping, David Watts, Hugh Coe, James Evans, Thomas J. Bannan, Douglas Lowe, Caroline Jay, and Jonathan W. Taylor
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-270, https://doi.org/10.5194/gmd-2020-270, 2020
Revised manuscript has not been submitted
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Time-series forecasting methods have often been used to mitigate some of the challenges associated with deploying chemical transport models. In this study we deploy and evaluate Facebook’s Prophetmodel v0.6 in predicting hourly concentrations of Nitrogen Dioxide [NO2]. et. Overall we find the Prophet model offers a relatively effective and simple way to make predictions about NO2 at local levels.
Petroc D. Shelley, Thomas J. Bannan, Stephen D. Worrall, M. Rami Alfarra, Ulrich K. Krieger, Carl J. Percival, Arthur Garforth, and David Topping
Atmos. Chem. Phys., 20, 8293–8314, https://doi.org/10.5194/acp-20-8293-2020, https://doi.org/10.5194/acp-20-8293-2020, 2020
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The methods used to estimate the vapour pressures of compounds in the atmosphere typically perform poorly when applied to organic compounds found in the atmosphere. New measurements have been made and compared to previous experimental data and estimated values so that the limitations within the estimation methods can be identified and in the future be rectified.
Natalie R. Gervasi, David O. Topping, and Andreas Zuend
Atmos. Chem. Phys., 20, 2987–3008, https://doi.org/10.5194/acp-20-2987-2020, https://doi.org/10.5194/acp-20-2987-2020, 2020
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Organic aerosols have been shown to exist often in a semi-solid or amorphous, glassy state. Highly viscous particles behave differently than their well-mixed liquid analogues with consequences for a variety of aerosol processes. Here, we introduce a new predictive mixture viscosity model called AIOMFAC-VISC. It enables us to predict the viscosity of aqueous organic mixtures as a function of temperature and chemical composition, covering the full range of liquid, semi-solid, and glassy states.
Parya Broomandi, Xueyu Geng, Weisi Guo, Jong Ryeol Kim, Alessio Pagani, and David Topping
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2019-342, https://doi.org/10.5194/gmd-2019-342, 2020
Revised manuscript not accepted
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As a result of our novel graph-based reduced modeling, we are able to represent high-dimensional knowledge into a causal inference and stability framework.
Kathryn Fowler, Paul Connolly, and David Topping
Atmos. Chem. Phys., 20, 683–698, https://doi.org/10.5194/acp-20-683-2020, https://doi.org/10.5194/acp-20-683-2020, 2020
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Observations of low–temperature cirrus clouds have found unexpectedly low ice crystal numbers and high supersaturations, suggesting an incomplete understanding of the freezing mechanisms under these conditions. The existence of viscous organic aerosol has offered alternative ice nucleation pathways, which have been observed in laboratory studies. We have developed the first cloud parcel model to investigate the effect of viscosity on ice nucleation.
Thomas J. Bannan, Michael Le Breton, Michael Priestley, Stephen D. Worrall, Asan Bacak, Nicholas A. Marsden, Archit Mehra, Julia Hammes, Mattias Hallquist, M. Rami Alfarra, Ulrich K. Krieger, Jonathan P. Reid, John Jayne, Wade Robinson, Gordon McFiggans, Hugh Coe, Carl J. Percival, and Dave Topping
Atmos. Meas. Tech., 12, 1429–1439, https://doi.org/10.5194/amt-12-1429-2019, https://doi.org/10.5194/amt-12-1429-2019, 2019
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The Filter Inlet for Gases and AEROsols (FIGAERO) is an inlet designed to be coupled with a high-resolution time-of-flight chemical ionization mass spectrometer (HR-ToF-CIMS) and provides simultaneous molecular information relating to both the gas- and particle-phase samples. This method has been used to extract vapour pressures of compounds whilst giving quantitative concentrations in the particle phase. Here we detail an ideal set of benchmark compounds for characterization of the FIGAERO.
Elizabeth Forde, Martin Gallagher, Virginia Foot, Roland Sarda-Esteve, Ian Crawford, Paul Kaye, Warren Stanley, and David Topping
Atmos. Chem. Phys., 19, 1665–1684, https://doi.org/10.5194/acp-19-1665-2019, https://doi.org/10.5194/acp-19-1665-2019, 2019
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The abundance and diversity of airborne biological particles in different environments remains poorly constrained. Measurements of such particles were conducted at four sites in the United Kingdom, using real-time fluorescence instrumentation. Using local land cover types, sources of suspected particle types were identified and compared. Most sites exhibited a wet-discharged fungal spore dominance, with the exception of one site, which was inferred to be influenced by a local dairy farm.
Simon Ruske, David O. Topping, Virginia E. Foot, Andrew P. Morse, and Martin W. Gallagher
Atmos. Meas. Tech., 11, 6203–6230, https://doi.org/10.5194/amt-11-6203-2018, https://doi.org/10.5194/amt-11-6203-2018, 2018
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Pollen, bacteria and fungal spores are common in the environment, can have very important implications for public health and may influence the weather. Biological sensors potentially could be used to monitor quantities of these types of particles. However, it is important to transform the measurements from these instruments into counts of these biological particles. The paper tests a variety of approaches for achieving this aim on data collected in a laboratory.
Dawei Hu, David Topping, and Gordon McFiggans
Atmos. Chem. Phys., 18, 14925–14937, https://doi.org/10.5194/acp-18-14925-2018, https://doi.org/10.5194/acp-18-14925-2018, 2018
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Co-condensation of inorganic or organic vapours on growing droplets could significantly enhance both CCN and cloud droplet number concentration, thereby influencing climate. Until now, there has been very few direct observational evidence of this process. We exposed involatile inorganic particles to a moist atmosphere containing a controlled amount of an organic semi-volatile vapour. We measured a much greater growth of the particles than if they had only been exposed to water vapour.
Michael Le Breton, Yujue Wang, Åsa M. Hallquist, Ravi Kant Pathak, Jing Zheng, Yudong Yang, Dongjie Shang, Marianne Glasius, Thomas J. Bannan, Qianyun Liu, Chak K. Chan, Carl J. Percival, Wenfei Zhu, Shengrong Lou, David Topping, Yuchen Wang, Jianzhen Yu, Keding Lu, Song Guo, Min Hu, and Mattias Hallquist
Atmos. Chem. Phys., 18, 10355–10371, https://doi.org/10.5194/acp-18-10355-2018, https://doi.org/10.5194/acp-18-10355-2018, 2018
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This paper utilizes a chemical ionisation mass spectrometer measuring gas and particle-phase organosulfates (OS) simultaneously during a field campaign in Beijing, China, and highlights how high time frequency online measurements enable a detailed analysis of dominant production mechanisms. We find that high aerosol acidity, organic precursor concentration and relative humidity promote the production of OS. The thermogram desorption reveals the potential for semi-volatile gas-phase OS.
Stefano Decesari, Simona Kovarich, Manuela Pavan, Arianna Bassan, Andrea Ciacci, and David Topping
Atmos. Chem. Phys., 18, 2329–2340, https://doi.org/10.5194/acp-18-2329-2018, https://doi.org/10.5194/acp-18-2329-2018, 2018
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Particulate matter (PM) chemical composition includes thousands of individual organic compounds that have never been tested for their toxicological potential. Computational (in silico) screenings represent a promising approach to identify new target compounds for more in-depth toxicological analyses. We provide here a proof-of-concept evaluation based on ca. 100 aerosol organic compounds. Reliable toxicological predictions were obtained for more than 80 % of them.
Kathryn Fowler, Paul J. Connolly, David O. Topping, and Simon O'Meara
Atmos. Chem. Phys., 18, 1629–1642, https://doi.org/10.5194/acp-18-1629-2018, https://doi.org/10.5194/acp-18-1629-2018, 2018
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This is the first time the Maxwell–Stefan framework has been applied to an atmospheric aerosol core–shell model and shows that there is a complex interplay between the viscous and solubility effects on aerosol composition. Understanding aerosol composition is essential to accurately model their interactions within atmospheric systems. We use simple binary systems to demonstrate how viscosity and solubility both play a role in affecting the rate of diffusion through aerosol particles.
Ulrich K. Krieger, Franziska Siegrist, Claudia Marcolli, Eva U. Emanuelsson, Freya M. Gøbel, Merete Bilde, Aleksandra Marsh, Jonathan P. Reid, Andrew J. Huisman, Ilona Riipinen, Noora Hyttinen, Nanna Myllys, Theo Kurtén, Thomas Bannan, Carl J. Percival, and David Topping
Atmos. Meas. Tech., 11, 49–63, https://doi.org/10.5194/amt-11-49-2018, https://doi.org/10.5194/amt-11-49-2018, 2018
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Vapor pressures of low-volatility organic molecules at atmospheric temperatures reported in the literature often differ by several orders of magnitude between measurement techniques. These discrepancies exceed the stated uncertainty of each technique, which is generally reported to be smaller than a factor of 2. We determined saturation vapor pressures for the homologous series of polyethylene glycols ranging in vapor pressure at 298 K from 1E−7 Pa to 5E−2 Pa as a reference set.
Simon O'Meara, David O. Topping, Rahul A. Zaveri, and Gordon McFiggans
Atmos. Chem. Phys., 17, 10477–10494, https://doi.org/10.5194/acp-17-10477-2017, https://doi.org/10.5194/acp-17-10477-2017, 2017
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To simulate particle-phase diffusion, an analytical expression is desired because it takes less calculation time than a differential equation. Here a correction is found for the analytical solution for when diffusivity is dependent on composition, thereby making it more widely applicable than before. Consequently, we are able to more realistically evaluate the rate limitation (if any) imposed by particle-phase diffusion on component partitioning between the gas and particle phase.
David O. Topping, James Allan, M. Rami Alfarra, and Bernard Aumont
Geosci. Model Dev., 10, 2365–2377, https://doi.org/10.5194/gmd-10-2365-2017, https://doi.org/10.5194/gmd-10-2365-2017, 2017
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Our ability to model the chemical and thermodynamic processes that lead to secondary organic aerosol (SOA) formation is thought to be hampered by the complexity of the system. In this proof of concept study, the ability to train supervised methods to predict electron impact ionisation (EI) mass spectra for the AMS is evaluated to facilitate improved model evaluation. The study demonstrates the use of a methodology that would be improved with more training data and data from simple mixed systems.
Simon Ruske, David O. Topping, Virginia E. Foot, Paul H. Kaye, Warren R. Stanley, Ian Crawford, Andrew P. Morse, and Martin W. Gallagher
Atmos. Meas. Tech., 10, 695–708, https://doi.org/10.5194/amt-10-695-2017, https://doi.org/10.5194/amt-10-695-2017, 2017
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Particles such as bacteria, pollen and fungal spores have important implications within the environment and public health sectors. Here we evaluate the performance of various different methods for distinguishing between these different types of particles using a new instrument. We demonstrate that there may be better alternatives to the currently used methods which can be further investigated in future research.
François Benduhn, Graham W. Mann, Kirsty J. Pringle, David O. Topping, Gordon McFiggans, and Kenneth S. Carslaw
Geosci. Model Dev., 9, 3875–3906, https://doi.org/10.5194/gmd-9-3875-2016, https://doi.org/10.5194/gmd-9-3875-2016, 2016
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We present a new mathematical formalism that serves to represent exchanges of inorganic matter between the atmosphere gas phase and the aerosol aqueous phase. In a global modelling framework, taking into account these processes may help represent many important features more accurately, such as the formation of cloud droplets or the radiative properties of the atmosphere. The formalism strives to keep an appropriate balance between accuracy and computation efficiency requirements.
Matthew Crooks, Paul Connolly, David Topping, and Gordon McFiggans
Geosci. Model Dev., 9, 3617–3637, https://doi.org/10.5194/gmd-9-3617-2016, https://doi.org/10.5194/gmd-9-3617-2016, 2016
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Semi-volatile compounds, like water, can exist in both vapour phases and condensed phases within a system. This paper presents a method of calculating the condensed and vapour phases of semi-volatile compounds at equilibrium, in particular, when the condensed mass occurs within particles of different sizes and chemical composition. The applications of interest to the authors are those of atmospheric importance such as cloud droplet formation and reflection or absorption of solar radiation.
Samuel Lowe, Daniel G. Partridge, David Topping, and Philip Stier
Atmos. Chem. Phys., 16, 10941–10963, https://doi.org/10.5194/acp-16-10941-2016, https://doi.org/10.5194/acp-16-10941-2016, 2016
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A novel inverse modelling framework is developed for analysing the sensitivity of cloud condensation nuclei (CCN) concentrations to simultaneous perturbations in multiple model parameters at atmospherically relevant humidities. Many parameter interactions are identified and CCN concentrations are found to be relatively insensitive to bulk–surface partitioning, while aerosol concentration, surface tension, composition and solution ideality exhibit a higher degree of sensitivity.
Simon O'Meara, David O. Topping, and Gordon McFiggans
Atmos. Chem. Phys., 16, 5299–5313, https://doi.org/10.5194/acp-16-5299-2016, https://doi.org/10.5194/acp-16-5299-2016, 2016
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To understand the effect of atmospheric particulate matter on climate and human health we need to know how it evolves. We investigate how best to estimate diffusion of components through particles by comparing diffusion times from three approaches to solving Fick's Law and find that they agree. This means that scientists can simulate Fickian diffusion through atmospheric particles using the approach best suited to their requirements and have confidence that their model is mathematically sound.
I. Crawford, S. Ruske, D. O. Topping, and M. W. Gallagher
Atmos. Meas. Tech., 8, 4979–4991, https://doi.org/10.5194/amt-8-4979-2015, https://doi.org/10.5194/amt-8-4979-2015, 2015
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HCA analysis methods were evaluated for the purpose of identifying primary biological aerosol sampled with a WIBS. The ward linkage with z-score normalisation could discriminate between five test particles with 98% accuracy. We applied these methods to a previously studied ambient data set, where both methods produced similar results with some minor differences in cluster partitioning. Finally we compared to previous approaches and found our new method offered improved quantification of PBA.
P. J. Connolly, D. O. Topping, F. Malavelle, and G. McFiggans
Atmos. Chem. Phys., 14, 2289–2302, https://doi.org/10.5194/acp-14-2289-2014, https://doi.org/10.5194/acp-14-2289-2014, 2014
Yunqi Shao, Yu Wang, Mao Du, Aristeidis Voliotis, M. Rami Alfarra, S. Fiona Turner, and Gordon McFiggans
Atmos. Meas. Tech. Discuss., https://doi.org/10.5194/amt-2021-147, https://doi.org/10.5194/amt-2021-147, 2021
Preprint under review for AMT
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This study describes the design and characterization of the Manchester Aerosol Chamber (MAC). MAC has good temperature and RH homogeneity, fast mixing times and comparable losses of gases and particles with other chambers. We also investigate the effect of contamination on chamber performance and we explore the SOA mass changes after applying various wall-loss correction methods. Our results highlight the need for tracking chamber performance by conducting regular characterization experiments.
Gabriel Isaacman-VanWertz and Bernard Aumont
Atmos. Chem. Phys., 21, 6541–6563, https://doi.org/10.5194/acp-21-6541-2021, https://doi.org/10.5194/acp-21-6541-2021, 2021
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There are tens of thousands of different chemical compounds in the atmosphere. To tackle this complexity, there are a wide range of different methods to estimate their physical and chemical properties. We use these methods to understand how much the detailed structure of a molecule impacts its properties, and the extent to which properties can be estimated without knowing this level of detail. We find that structure matters, but methods lacking that level of detail still perform reasonably well.
Langwen Huang and David Topping
Geosci. Model Dev., 14, 2187–2203, https://doi.org/10.5194/gmd-14-2187-2021, https://doi.org/10.5194/gmd-14-2187-2021, 2021
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As our knowledge and understanding of atmospheric aerosol particle evolution and impact grows, designing community mechanistic models requires an ability to capture increasing chemical, physical and therefore numerical complexity. As the landscape of computing software and hardware evolves, it is important to profile the usefulness of emerging platforms in tackling this complexity. With this in mind we present JlBox v1.1, written in Julia.
Jessica Slater, Hugh Coe, Gordon McFiggans, Juha Tonttila, and Sami Romakkaniemi
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2021-139, https://doi.org/10.5194/acp-2021-139, 2021
Preprint under review for ACP
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This paper shows the specific impact of black carbon (BC) on the aerosol-planetary boundary layer (PBL) feedback and its influence on a Beijing haze episode. Overall, this paper shows that strong temperature inversions prevent BC heating within the PBL from significantly increasing PBL height, while BC above the PBL suppresses PBL development significantly through the day. From this we suggest a method by which both locally and regionally emitted BC may impact Beijing haze episodes.
Aristeidis Voliotis, Yu Wang, Yunqi Shao, Mao Du, Thomas J. Bannan, Carl J. Percival, Spyros N. Pandis, M. Rami Alfarra, and Gordon McFiggans
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2021-215, https://doi.org/10.5194/acp-2021-215, 2021
Preprint under review for ACP
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Secondary organic aerosol (SOA) formation from mixtures of volatile precursors can be affected by the molecular interactions of the products. Composition and volatility measurements of SOA formed from mixtures of anthropogenic and biogenic precursors reveal processes that can increase or decrease the SOA volatility. The unique products of the mixture are more oxygenated and less volatile than those from either precursor. Analytical context is provided to explore the SOA volatility in mixtures.
Michael Priestley, Thomas J. Bannan, Michael Le Breton, Stephen D. Worrall, Sungah Kang, Iida Pullinen, Sebastian Schmitt, Ralf Tillmann, Einhard Kleist, Defeng Zhao, Jürgen Wildt, Olga Garmash, Archit Mehra, Asan Bacak, Dudley E. Shallcross, Astrid Kiendler-Scharr, Åsa M. Hallquist, Mikael Ehn, Hugh Coe, Carl J. Percival, Mattias Hallquist, Thomas F. Mentel, and Gordon McFiggans
Atmos. Chem. Phys., 21, 3473–3490, https://doi.org/10.5194/acp-21-3473-2021, https://doi.org/10.5194/acp-21-3473-2021, 2021
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A significant fraction of emissions from human activity consists of aromatic hydrocarbons, e.g. benzene, which oxidise to form new compounds important for particle growth. Characterisation of benzene oxidation products highlights the range of species produced as well as their chemical properties and contextualises them within relevant frameworks, e.g. MCM. Cluster analysis of the oxidation product time series distinguishes behaviours of CHON compounds that could aid in identifying functionality.
Zhe Peng, Julia Lee-Taylor, Harald Stark, John J. Orlando, Bernard Aumont, and Jose L. Jimenez
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2021-118, https://doi.org/10.5194/acp-2021-118, 2021
Preprint under review for ACP
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We use the fully explicit GECKO-A model to study the OH reactivity (OHR) evolution in the low-NO photooxidation of several volatile organic compounds. Oxidation progressively produces more saturated and functionalized species, then breaks them into small species. OHR per C atom evolution is similar for different precursors once saturated multifunctional species are formed. We also find that partitioning of these species to chamber walls leads to large deviations in chambers from the atmosphere.
Yu Wang, Aristeidis Voliotis, Yunqi Shao, Taomou Zong, Xiangxinyue Meng, Mao Du, Dawei Hu, Ying Chen, Zhijun Wu, M. Rami Alfarra, and Gordon McFiggans
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2021-105, https://doi.org/10.5194/acp-2021-105, 2021
Preprint under review for ACP
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Aerosol phase behaviour plays a profound role in atmospheric physicochemical processes. We designed dedicated chamber experiments to study phase state of secondary organic aerosol from biogenic and anthropogenic mixed precursors. Our results highlight the key role of organic-inorganic-ratio and relative humidity in phase state, but the sources and organic composition is less important. This result provides a solid laboratory evidence for understanding aerosol phase in complex atmosphere.
Tommaso Galeazzo, Richard Valorso, Ying Li, Marie Camredon, Bernard Aumont, and Manabu Shiraiwa
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2021-17, https://doi.org/10.5194/acp-2021-17, 2021
Revised manuscript accepted for ACP
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We simulate SOA viscosity with explicit modeling of gas-phase oxidation of isoprene and α-pinene. While the viscosity dependence on relative humidity and mass loadings is captured well by simulations, the model underestimates measured viscosity indicating missing processes. Kinetic limitations and reduction in mass accommodation may cause an increase of viscosity. The developed model is powerful for investigation of the interplay among gas reactions, chemical composition and phase state.
Simon Patrick O'Meara, Shuxuan Xu, David Topping, M. Rami Alfarra, Gerard Capes, Douglas Lowe, Yunqi Shao, and Gordon McFiggans
Geosci. Model Dev., 14, 675–702, https://doi.org/10.5194/gmd-14-675-2021, https://doi.org/10.5194/gmd-14-675-2021, 2021
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User-friendly and open-source software for simulating aerosol chambers is a valuable tool for research scientists in designing and analysing their experiments. This paper describes a new version of such software and will therefore provide a useful reference for those applying it. Central to the paper is an assessment of the software's accuracy through comparison against previously published simulations.
Douglas Morrison, Ian Crawford, Nicholas Marsden, Michael Flynn, Katie Read, Luis Neves, Virginia Foot, Paul Kaye, Warren Stanley, Hugh Coe, David Topping, and Martin Gallagher
Atmos. Chem. Phys., 20, 14473–14490, https://doi.org/10.5194/acp-20-14473-2020, https://doi.org/10.5194/acp-20-14473-2020, 2020
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We provide conservative estimates of the concentrations of bacteria within transatlantic dust clouds, originating from the African continent. We observe significant seasonal differences in the overall concentrations of particles but no seasonal variation in the ratio between bacteria and dust. With bacteria contributing to ice formation at warmer temperatures than dust, our observations should improve the accuracy of climate models.
Michael E. Jenkin, Richard Valorso, Bernard Aumont, Mike J. Newland, and Andrew R. Rickard
Atmos. Chem. Phys., 20, 12921–12937, https://doi.org/10.5194/acp-20-12921-2020, https://doi.org/10.5194/acp-20-12921-2020, 2020
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Unsaturated organic compounds are emitted in large quantities from natural and human-influenced sources. Atmospheric removal occurs significantly by reaction with ozone, initiating reaction sequences forming free radicals and organic pollutants in the gaseous and particulate phases. Due to their very large number, it is impossible to study the reaction rate for every compound, and most have to be estimated. Updated and extended estimation methods are reported for use in atmospheric models.
Jessica Slater, Juha Tonttila, Gordon McFiggans, Paul Connolly, Sami Romakkaniemi, Thomas Kühn, and Hugh Coe
Atmos. Chem. Phys., 20, 11893–11906, https://doi.org/10.5194/acp-20-11893-2020, https://doi.org/10.5194/acp-20-11893-2020, 2020
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The feedback effect between aerosol particles, radiation and meteorology reduces turbulent motion and results in increased surface aerosol concentrations during Beijing haze. Observational analysis and regional modelling studies have examined the feedback effect but these studies are limited. In this work, we set up a high-resolution model for the Beijing environment to examine the sensitivity of the aerosol feedback effect to initial meteorological conditions and aerosol loading.
Isaac Kwadjo Afreh, Bernard Aumont, Marie Camredon, and Kelley Claire Barsanti
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2020-829, https://doi.org/10.5194/acp-2020-829, 2020
Revised manuscript accepted for ACP
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This is the first SOA modeling study of the ubiquitous but understudied monoterpene, camphene. The explicit chemical model GECKO-A represented chamber data for two well-studied monoterpenes. The predicted camphene SOA yield was relatively high in comparison, ~2× α-pinene. Using 50 / 50 α-pinene / limonene as a surrogate for camphene increased predicted SOA mass from biomass burning fuels by up to ~100 %. The accurate representation of camphene in air quality models can improve predictions of SOA.
Ernesto Reyes-Villegas, Upasana Panda, Eoghan Darbyshire, James M. Cash, Rutambhara Joshi, Ben Langford, Chiara F. Di Marco, Neil Mullinger, W. Joe F. Acton, Will Drysdale, Eiko Nemitz, Michael Flynn, Aristeidis Voliotis, Gordon McFiggans, Hugh Coe, James Lee, C. Nicholas Hewitt, Mathew R. Heal, Sachin S. Gunthe, Shivani, Ranu Gadi, Siddhartha Singh, Vijay Soni, and James D. Allan
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2020-894, https://doi.org/10.5194/acp-2020-894, 2020
Preprint under review for ACP
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The work presented in this manuscript shows the first multisite online measurements of PM1 in Delhi, India. It covers measurements over different seasons in Old and New Delhi during 2018. OA source apportionment was performed using PMF. Traffic showed to be the main primary aerosol source for both OA and BC, as seen with the PMF analysis and aethalometer model analysis. This indicates that in Delhi control of primary traffic exhaust emissions would make a significant reduction to air pollution.
David Topping, David Watts, Hugh Coe, James Evans, Thomas J. Bannan, Douglas Lowe, Caroline Jay, and Jonathan W. Taylor
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-270, https://doi.org/10.5194/gmd-2020-270, 2020
Revised manuscript has not been submitted
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Time-series forecasting methods have often been used to mitigate some of the challenges associated with deploying chemical transport models. In this study we deploy and evaluate Facebook’s Prophetmodel v0.6 in predicting hourly concentrations of Nitrogen Dioxide [NO2]. et. Overall we find the Prophet model offers a relatively effective and simple way to make predictions about NO2 at local levels.
Petroc D. Shelley, Thomas J. Bannan, Stephen D. Worrall, M. Rami Alfarra, Ulrich K. Krieger, Carl J. Percival, Arthur Garforth, and David Topping
Atmos. Chem. Phys., 20, 8293–8314, https://doi.org/10.5194/acp-20-8293-2020, https://doi.org/10.5194/acp-20-8293-2020, 2020
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The methods used to estimate the vapour pressures of compounds in the atmosphere typically perform poorly when applied to organic compounds found in the atmosphere. New measurements have been made and compared to previous experimental data and estimated values so that the limitations within the estimation methods can be identified and in the future be rectified.
Camille Mouchel-Vallon, Julia Lee-Taylor, Alma Hodzic, Paulo Artaxo, Bernard Aumont, Marie Camredon, David Gurarie, Jose-Luis Jimenez, Donald H. Lenschow, Scot T. Martin, Janaina Nascimento, John J. Orlando, Brett B. Palm, John E. Shilling, Manish Shrivastava, and Sasha Madronich
Atmos. Chem. Phys., 20, 5995–6014, https://doi.org/10.5194/acp-20-5995-2020, https://doi.org/10.5194/acp-20-5995-2020, 2020
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The GoAmazon 2014/5 field campaign took place near the city of Manaus, Brazil, isolated in the Amazon rainforest, to study the impacts of urban pollution on natural air masses. We simulated this campaign with an extremely detailed organic chemistry model to understand how the city would affect the growth and composition of natural aerosol particles. Discrepancies between the model and the measurements indicate that the chemistry of naturally emitted organic compounds is still poorly understood.
Victor Lannuque, Florian Couvidat, Marie Camredon, Bernard Aumont, and Bertrand Bessagnet
Atmos. Chem. Phys., 20, 4905–4931, https://doi.org/10.5194/acp-20-4905-2020, https://doi.org/10.5194/acp-20-4905-2020, 2020
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Large uncertainties remain in modeling secondary organic aerosol (SOA) and evolution and properties in air quality models. In this article, the recently developed VBS-GECKO parameterization for SOA formation has been implemented in the air quality model CHIMERE. Simulations have been driven to identify the main SOA sources and to evaluate the sensitivity of simulated SOA concentrations to (i) secondary organic compound properties and (ii) emissions from traffic and transportation sources.
Natalie R. Gervasi, David O. Topping, and Andreas Zuend
Atmos. Chem. Phys., 20, 2987–3008, https://doi.org/10.5194/acp-20-2987-2020, https://doi.org/10.5194/acp-20-2987-2020, 2020
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Organic aerosols have been shown to exist often in a semi-solid or amorphous, glassy state. Highly viscous particles behave differently than their well-mixed liquid analogues with consequences for a variety of aerosol processes. Here, we introduce a new predictive mixture viscosity model called AIOMFAC-VISC. It enables us to predict the viscosity of aqueous organic mixtures as a function of temperature and chemical composition, covering the full range of liquid, semi-solid, and glassy states.
Parya Broomandi, Xueyu Geng, Weisi Guo, Jong Ryeol Kim, Alessio Pagani, and David Topping
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2019-342, https://doi.org/10.5194/gmd-2019-342, 2020
Revised manuscript not accepted
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As a result of our novel graph-based reduced modeling, we are able to represent high-dimensional knowledge into a causal inference and stability framework.
Yu Wang, Ying Chen, Zhijun Wu, Dongjie Shang, Yuxuan Bian, Zhuofei Du, Sebastian H. Schmitt, Rong Su, Georgios I. Gkatzelis, Patrick Schlag, Thorsten Hohaus, Aristeidis Voliotis, Keding Lu, Limin Zeng, Chunsheng Zhao, M. Rami Alfarra, Gordon McFiggans, Alfred Wiedensohler, Astrid Kiendler-Scharr, Yuanhang Zhang, and Min Hu
Atmos. Chem. Phys., 20, 2161–2175, https://doi.org/10.5194/acp-20-2161-2020, https://doi.org/10.5194/acp-20-2161-2020, 2020
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Severe haze events, with high particulate nitrate (pNO3−) burden, frequently prevail in Beijing. In this study, we demonstrate a mutual-promotion effect between aerosol water uptake and pNO3− formation backed up by theoretical calculations and field observations throughout a typical pNO3−-dominated haze event in Beijing wintertime. This self-amplified mutual-promotion effect between aerosol water content and particulate nitrate can rapidly deteriorate air quality and degrade visibility.
Kathryn Fowler, Paul Connolly, and David Topping
Atmos. Chem. Phys., 20, 683–698, https://doi.org/10.5194/acp-20-683-2020, https://doi.org/10.5194/acp-20-683-2020, 2020
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Observations of low–temperature cirrus clouds have found unexpectedly low ice crystal numbers and high supersaturations, suggesting an incomplete understanding of the freezing mechanisms under these conditions. The existence of viscous organic aerosol has offered alternative ice nucleation pathways, which have been observed in laboratory studies. We have developed the first cloud parcel model to investigate the effect of viscosity on ice nucleation.
Olga Garmash, Matti P. Rissanen, Iida Pullinen, Sebastian Schmitt, Oskari Kausiala, Ralf Tillmann, Defeng Zhao, Carl Percival, Thomas J. Bannan, Michael Priestley, Åsa M. Hallquist, Einhard Kleist, Astrid Kiendler-Scharr, Mattias Hallquist, Torsten Berndt, Gordon McFiggans, Jürgen Wildt, Thomas F. Mentel, and Mikael Ehn
Atmos. Chem. Phys., 20, 515–537, https://doi.org/10.5194/acp-20-515-2020, https://doi.org/10.5194/acp-20-515-2020, 2020
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Highly oxygenated organic molecules (HOMs) facilitate aerosol formation in the atmosphere. Using NO3− chemical ionization mass spectrometry we investigated HOM composition and yield in oxidation of aromatic compounds at different reactant concentrations, in the presence of NOx and seed aerosol. Higher OH concentrations increased HOM yield, suggesting multiple oxidation steps, and affected HOM composition, potentially explaining in part discrepancies in published secondary organic aerosol yields.
Ying Chen, Oliver Wild, Edmund Ryan, Saroj Kumar Sahu, Douglas Lowe, Scott Archer-Nicholls, Yu Wang, Gordon McFiggans, Tabish Ansari, Vikas Singh, Ranjeet S. Sokhi, Alex Archibald, and Gufran Beig
Atmos. Chem. Phys., 20, 499–514, https://doi.org/10.5194/acp-20-499-2020, https://doi.org/10.5194/acp-20-499-2020, 2020
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PM2.5 and O3 are two major air pollutants. Some mitigation strategies focusing on reducing PM2.5 may lead to substantial increase in O3. We use statistical emulation combined with atmospheric transport model to perform thousands of sensitivity numerical studies to identify the major sources of PM2.5 and O3 and to develop strategies targeted at both pollutants. Our scientific evidence suggests that regional coordinated emission control is required to mitigate PM2.5 whilst preventing O3 increase.
Peter Bräuer, Camille Mouchel-Vallon, Andreas Tilgner, Anke Mutzel, Olaf Böge, Maria Rodigast, Laurent Poulain, Dominik van Pinxteren, Ralf Wolke, Bernard Aumont, and Hartmut Herrmann
Atmos. Chem. Phys., 19, 9209–9239, https://doi.org/10.5194/acp-19-9209-2019, https://doi.org/10.5194/acp-19-9209-2019, 2019
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The article presents a new protocol for computer-assisted automated aqueous-phase chemistry mechanism generation, which has been validated against chamber experiments. Together with a large kinetics database and improved prediction methods for kinetic data, the novel protocol provides an unmatched tool for detailed studies of tropospheric aqueous-phase chemistry in complex model studies and for the design and analysis of chamber experiments.
Michael E. Jenkin, Richard Valorso, Bernard Aumont, and Andrew R. Rickard
Atmos. Chem. Phys., 19, 7691–7717, https://doi.org/10.5194/acp-19-7691-2019, https://doi.org/10.5194/acp-19-7691-2019, 2019
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Organic compounds are emitted in large amounts from natural and human-influenced sources. Peroxy radicals are key intermediates formed during oxidation of organic compounds, and play a central role in mechanisms forming pollutants such as ozone and organic particles. Due to the large number of different peroxy radicals formed, it is impossible to study the rates of all of their reactions, and most have to be estimated. Updated and new estimation methods are reported for use in atmospheric models
Zongbo Shi, Tuan Vu, Simone Kotthaus, Roy M. Harrison, Sue Grimmond, Siyao Yue, Tong Zhu, James Lee, Yiqun Han, Matthias Demuzere, Rachel E. Dunmore, Lujie Ren, Di Liu, Yuanlin Wang, Oliver Wild, James Allan, W. Joe Acton, Janet Barlow, Benjamin Barratt, David Beddows, William J. Bloss, Giulia Calzolai, David Carruthers, David C. Carslaw, Queenie Chan, Lia Chatzidiakou, Yang Chen, Leigh Crilley, Hugh Coe, Tie Dai, Ruth Doherty, Fengkui Duan, Pingqing Fu, Baozhu Ge, Maofa Ge, Daobo Guan, Jacqueline F. Hamilton, Kebin He, Mathew Heal, Dwayne Heard, C. Nicholas Hewitt, Michael Hollaway, Min Hu, Dongsheng Ji, Xujiang Jiang, Rod Jones, Markus Kalberer, Frank J. Kelly, Louisa Kramer, Ben Langford, Chun Lin, Alastair C. Lewis, Jie Li, Weijun Li, Huan Liu, Junfeng Liu, Miranda Loh, Keding Lu, Franco Lucarelli, Graham Mann, Gordon McFiggans, Mark R. Miller, Graham Mills, Paul Monk, Eiko Nemitz, Fionna O'Connor, Bin Ouyang, Paul I. Palmer, Carl Percival, Olalekan Popoola, Claire Reeves, Andrew R. Rickard, Longyi Shao, Guangyu Shi, Dominick Spracklen, David Stevenson, Yele Sun, Zhiwei Sun, Shu Tao, Shengrui Tong, Qingqing Wang, Wenhua Wang, Xinming Wang, Xuejun Wang, Zifang Wang, Lianfang Wei, Lisa Whalley, Xuefang Wu, Zhijun Wu, Pinhua Xie, Fumo Yang, Qiang Zhang, Yanli Zhang, Yuanhang Zhang, and Mei Zheng
Atmos. Chem. Phys., 19, 7519–7546, https://doi.org/10.5194/acp-19-7519-2019, https://doi.org/10.5194/acp-19-7519-2019, 2019
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APHH-Beijing is a collaborative international research programme to study the sources, processes and health effects of air pollution in Beijing. This introduction to the special issue provides an overview of (i) the APHH-Beijing programme, (ii) the measurement and modelling activities performed as part of it and (iii) the air quality and meteorological conditions during joint intensive field campaigns as a core activity within APHH-Beijing.
Thomas J. Bannan, Michael Le Breton, Michael Priestley, Stephen D. Worrall, Asan Bacak, Nicholas A. Marsden, Archit Mehra, Julia Hammes, Mattias Hallquist, M. Rami Alfarra, Ulrich K. Krieger, Jonathan P. Reid, John Jayne, Wade Robinson, Gordon McFiggans, Hugh Coe, Carl J. Percival, and Dave Topping
Atmos. Meas. Tech., 12, 1429–1439, https://doi.org/10.5194/amt-12-1429-2019, https://doi.org/10.5194/amt-12-1429-2019, 2019
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The Filter Inlet for Gases and AEROsols (FIGAERO) is an inlet designed to be coupled with a high-resolution time-of-flight chemical ionization mass spectrometer (HR-ToF-CIMS) and provides simultaneous molecular information relating to both the gas- and particle-phase samples. This method has been used to extract vapour pressures of compounds whilst giving quantitative concentrations in the particle phase. Here we detail an ideal set of benchmark compounds for characterization of the FIGAERO.
Elizabeth Forde, Martin Gallagher, Virginia Foot, Roland Sarda-Esteve, Ian Crawford, Paul Kaye, Warren Stanley, and David Topping
Atmos. Chem. Phys., 19, 1665–1684, https://doi.org/10.5194/acp-19-1665-2019, https://doi.org/10.5194/acp-19-1665-2019, 2019
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The abundance and diversity of airborne biological particles in different environments remains poorly constrained. Measurements of such particles were conducted at four sites in the United Kingdom, using real-time fluorescence instrumentation. Using local land cover types, sources of suspected particle types were identified and compared. Most sites exhibited a wet-discharged fungal spore dominance, with the exception of one site, which was inferred to be influenced by a local dairy farm.
Simon Ruske, David O. Topping, Virginia E. Foot, Andrew P. Morse, and Martin W. Gallagher
Atmos. Meas. Tech., 11, 6203–6230, https://doi.org/10.5194/amt-11-6203-2018, https://doi.org/10.5194/amt-11-6203-2018, 2018
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Pollen, bacteria and fungal spores are common in the environment, can have very important implications for public health and may influence the weather. Biological sensors potentially could be used to monitor quantities of these types of particles. However, it is important to transform the measurements from these instruments into counts of these biological particles. The paper tests a variety of approaches for achieving this aim on data collected in a laboratory.
Dawei Hu, David Topping, and Gordon McFiggans
Atmos. Chem. Phys., 18, 14925–14937, https://doi.org/10.5194/acp-18-14925-2018, https://doi.org/10.5194/acp-18-14925-2018, 2018
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Co-condensation of inorganic or organic vapours on growing droplets could significantly enhance both CCN and cloud droplet number concentration, thereby influencing climate. Until now, there has been very few direct observational evidence of this process. We exposed involatile inorganic particles to a moist atmosphere containing a controlled amount of an organic semi-volatile vapour. We measured a much greater growth of the particles than if they had only been exposed to water vapour.
Victor Lannuque, Marie Camredon, Florian Couvidat, Alma Hodzic, Richard Valorso, Sasha Madronich, Bertrand Bessagnet, and Bernard Aumont
Atmos. Chem. Phys., 18, 13411–13428, https://doi.org/10.5194/acp-18-13411-2018, https://doi.org/10.5194/acp-18-13411-2018, 2018
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Large uncertainties remain in understanding the influence of atmospheric environmental conditions on secondary organic aerosol (SOA) formation, evolution and properties. In this article, the GECKO-A modelling tool has been used in a box model under various environmental conditions to (i) explore the sensitivity of SOA formation and properties to changes on physical and chemical conditions and (ii) develop a volatility-basis-set-type parameterization for air quality models.
Matthew Crooks, Paul Connolly, and Gordon McFiggans
Geosci. Model Dev., 11, 3261–3278, https://doi.org/10.5194/gmd-11-3261-2018, https://doi.org/10.5194/gmd-11-3261-2018, 2018
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Clouds form when water condenses onto particles in the atmosphere and the size and chemical composition of these particles can have a large influence over how much water condenses and the subsequent formation of cloud. Additional gases exist in the atmosphere that can condense onto the aerosol particles and change their composition. We present a fast and efficient method of calculating the effect of atmospheric gases on the formation of cloud that can be used in climate and weather models.
Kelly L. Pereira, Rachel Dunmore, James Whitehead, M. Rami Alfarra, James D. Allan, Mohammed S. Alam, Roy M. Harrison, Gordon McFiggans, and Jacqueline F. Hamilton
Atmos. Chem. Phys., 18, 11073–11096, https://doi.org/10.5194/acp-18-11073-2018, https://doi.org/10.5194/acp-18-11073-2018, 2018
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Exhaust emissions from a light-duty diesel engine were introduced into an atmospheric simulation chamber which was used as a holding-cell for sampling, allowing instruments capable of providing detailed chemical speciation of exhaust gas emissions to be used. The effect of different engine conditions on the exhaust gas composition was investigated. The exhaust composition changed considerably due to two influencing factors, engine combustion and diesel oxidative catalyst efficiency.
Michael Le Breton, Yujue Wang, Åsa M. Hallquist, Ravi Kant Pathak, Jing Zheng, Yudong Yang, Dongjie Shang, Marianne Glasius, Thomas J. Bannan, Qianyun Liu, Chak K. Chan, Carl J. Percival, Wenfei Zhu, Shengrong Lou, David Topping, Yuchen Wang, Jianzhen Yu, Keding Lu, Song Guo, Min Hu, and Mattias Hallquist
Atmos. Chem. Phys., 18, 10355–10371, https://doi.org/10.5194/acp-18-10355-2018, https://doi.org/10.5194/acp-18-10355-2018, 2018
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This paper utilizes a chemical ionisation mass spectrometer measuring gas and particle-phase organosulfates (OS) simultaneously during a field campaign in Beijing, China, and highlights how high time frequency online measurements enable a detailed analysis of dominant production mechanisms. We find that high aerosol acidity, organic precursor concentration and relative humidity promote the production of OS. The thermogram desorption reveals the potential for semi-volatile gas-phase OS.
Wiebke Frey, Dawei Hu, James Dorsey, M. Rami Alfarra, Aki Pajunoja, Annele Virtanen, Paul Connolly, and Gordon McFiggans
Atmos. Chem. Phys., 18, 9393–9409, https://doi.org/10.5194/acp-18-9393-2018, https://doi.org/10.5194/acp-18-9393-2018, 2018
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The coupled system of the Manchester Aerosol Chamber and Manchester Ice Cloud Chamber was used to study the ice-forming abilities of secondary
organic aerosol particles under mixed-phase cloud conditions. Given the vast abundance of secondary organic particles in the atmosphere, they
might present an important contribution to ice-nucleating particles. However, we find that in the studied temperature range (20 to 28 °C)
the secondary organic particles do not nucleate ice particles.
Michael E. Jenkin, Richard Valorso, Bernard Aumont, Andrew R. Rickard, and Timothy J. Wallington
Atmos. Chem. Phys., 18, 9297–9328, https://doi.org/10.5194/acp-18-9297-2018, https://doi.org/10.5194/acp-18-9297-2018, 2018
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Organic compounds are emitted in large quantities from natural and human-influenced sources. Removal from the atmosphere occurs mainly by reaction with hydroxyl (OH) radicals, and initiates reaction sequences forming pollutants such as ozone and organic particles. Due to their very large number, it is impossible to measure the removal rate for all compounds, and most have to be estimated. An updated and extended estimation method is reported for use in atmospheric models and impact assessments.
Michael E. Jenkin, Richard Valorso, Bernard Aumont, Andrew R. Rickard, and Timothy J. Wallington
Atmos. Chem. Phys., 18, 9329–9349, https://doi.org/10.5194/acp-18-9329-2018, https://doi.org/10.5194/acp-18-9329-2018, 2018
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Organic compounds are emitted in large quantities from natural and human-influenced sources. Removal from the atmosphere occurs mainly by reaction with hydroxyl (OH) radicals, and initiates reaction sequences forming pollutants such as ozone and organic particles. Due to their very large number, it is impossible to measure the removal rate for all compounds, and most have to be estimated. An updated and extended estimation method is reported for use in atmospheric models and impact assessments.
Emma L. Simpson, Paul J. Connolly, and Gordon McFiggans
Atmos. Chem. Phys., 18, 7237–7250, https://doi.org/10.5194/acp-18-7237-2018, https://doi.org/10.5194/acp-18-7237-2018, 2018
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This study explores the process of ice formation in clouds by conducting computer model simulations and laboratory experiments in a cloud chamber. We show that the formation of ice in clouds can be limited by the presence of atmospheric aerosol particles and that further research is required to identify the requirements for freezing, e.g. minimum mass of water, in order to accurately calculate ice formation and thus improve climate and weather prediction.
Stefano Decesari, Simona Kovarich, Manuela Pavan, Arianna Bassan, Andrea Ciacci, and David Topping
Atmos. Chem. Phys., 18, 2329–2340, https://doi.org/10.5194/acp-18-2329-2018, https://doi.org/10.5194/acp-18-2329-2018, 2018
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Particulate matter (PM) chemical composition includes thousands of individual organic compounds that have never been tested for their toxicological potential. Computational (in silico) screenings represent a promising approach to identify new target compounds for more in-depth toxicological analyses. We provide here a proof-of-concept evaluation based on ca. 100 aerosol organic compounds. Reliable toxicological predictions were obtained for more than 80 % of them.
Kathryn Fowler, Paul J. Connolly, David O. Topping, and Simon O'Meara
Atmos. Chem. Phys., 18, 1629–1642, https://doi.org/10.5194/acp-18-1629-2018, https://doi.org/10.5194/acp-18-1629-2018, 2018
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This is the first time the Maxwell–Stefan framework has been applied to an atmospheric aerosol core–shell model and shows that there is a complex interplay between the viscous and solubility effects on aerosol composition. Understanding aerosol composition is essential to accurately model their interactions within atmospheric systems. We use simple binary systems to demonstrate how viscosity and solubility both play a role in affecting the rate of diffusion through aerosol particles.
Ulrich K. Krieger, Franziska Siegrist, Claudia Marcolli, Eva U. Emanuelsson, Freya M. Gøbel, Merete Bilde, Aleksandra Marsh, Jonathan P. Reid, Andrew J. Huisman, Ilona Riipinen, Noora Hyttinen, Nanna Myllys, Theo Kurtén, Thomas Bannan, Carl J. Percival, and David Topping
Atmos. Meas. Tech., 11, 49–63, https://doi.org/10.5194/amt-11-49-2018, https://doi.org/10.5194/amt-11-49-2018, 2018
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Vapor pressures of low-volatility organic molecules at atmospheric temperatures reported in the literature often differ by several orders of magnitude between measurement techniques. These discrepancies exceed the stated uncertainty of each technique, which is generally reported to be smaller than a factor of 2. We determined saturation vapor pressures for the homologous series of polyethylene glycols ranging in vapor pressure at 298 K from 1E−7 Pa to 5E−2 Pa as a reference set.
Simon O'Meara, David O. Topping, Rahul A. Zaveri, and Gordon McFiggans
Atmos. Chem. Phys., 17, 10477–10494, https://doi.org/10.5194/acp-17-10477-2017, https://doi.org/10.5194/acp-17-10477-2017, 2017
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To simulate particle-phase diffusion, an analytical expression is desired because it takes less calculation time than a differential equation. Here a correction is found for the analytical solution for when diffusivity is dependent on composition, thereby making it more widely applicable than before. Consequently, we are able to more realistically evaluate the rate limitation (if any) imposed by particle-phase diffusion on component partitioning between the gas and particle phase.
David O. Topping, James Allan, M. Rami Alfarra, and Bernard Aumont
Geosci. Model Dev., 10, 2365–2377, https://doi.org/10.5194/gmd-10-2365-2017, https://doi.org/10.5194/gmd-10-2365-2017, 2017
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Our ability to model the chemical and thermodynamic processes that lead to secondary organic aerosol (SOA) formation is thought to be hampered by the complexity of the system. In this proof of concept study, the ability to train supervised methods to predict electron impact ionisation (EI) mass spectra for the AMS is evaluated to facilitate improved model evaluation. The study demonstrates the use of a methodology that would be improved with more training data and data from simple mixed systems.
Huan Yao, Yu Song, Mingxu Liu, Scott Archer-Nicholls, Douglas Lowe, Gordon McFiggans, Tingting Xu, Pin Du, Jianfeng Li, Yusheng Wu, Min Hu, Chun Zhao, and Tong Zhu
Atmos. Chem. Phys., 17, 5205–5219, https://doi.org/10.5194/acp-17-5205-2017, https://doi.org/10.5194/acp-17-5205-2017, 2017
Camille Mouchel-Vallon, Laurent Deguillaume, Anne Monod, Hélène Perroux, Clémence Rose, Giovanni Ghigo, Yoann Long, Maud Leriche, Bernard Aumont, Luc Patryl, Patrick Armand, and Nadine Chaumerliac
Geosci. Model Dev., 10, 1339–1362, https://doi.org/10.5194/gmd-10-1339-2017, https://doi.org/10.5194/gmd-10-1339-2017, 2017
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The Cloud Explicit Physico-chemical Scheme (CLEPS 1.0) describes oxidation of water-soluble organic compounds resulting from isoprene oxidation. It is based on structure activity relationships (SARs) (global rate constants and branching ratios for HO• abstraction and addition) and GROMHE SAR (Henry's law constants for undocumented species). It is coupled to the MCM gas phase mechanism and is included in a model using the DSMACC model and KPP to analyze experimental and field data.
Simon Ruske, David O. Topping, Virginia E. Foot, Paul H. Kaye, Warren R. Stanley, Ian Crawford, Andrew P. Morse, and Martin W. Gallagher
Atmos. Meas. Tech., 10, 695–708, https://doi.org/10.5194/amt-10-695-2017, https://doi.org/10.5194/amt-10-695-2017, 2017
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Particles such as bacteria, pollen and fungal spores have important implications within the environment and public health sectors. Here we evaluate the performance of various different methods for distinguishing between these different types of particles using a new instrument. We demonstrate that there may be better alternatives to the currently used methods which can be further investigated in future research.
François Benduhn, Graham W. Mann, Kirsty J. Pringle, David O. Topping, Gordon McFiggans, and Kenneth S. Carslaw
Geosci. Model Dev., 9, 3875–3906, https://doi.org/10.5194/gmd-9-3875-2016, https://doi.org/10.5194/gmd-9-3875-2016, 2016
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We present a new mathematical formalism that serves to represent exchanges of inorganic matter between the atmosphere gas phase and the aerosol aqueous phase. In a global modelling framework, taking into account these processes may help represent many important features more accurately, such as the formation of cloud droplets or the radiative properties of the atmosphere. The formalism strives to keep an appropriate balance between accuracy and computation efficiency requirements.
Matthew Crooks, Paul Connolly, David Topping, and Gordon McFiggans
Geosci. Model Dev., 9, 3617–3637, https://doi.org/10.5194/gmd-9-3617-2016, https://doi.org/10.5194/gmd-9-3617-2016, 2016
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Semi-volatile compounds, like water, can exist in both vapour phases and condensed phases within a system. This paper presents a method of calculating the condensed and vapour phases of semi-volatile compounds at equilibrium, in particular, when the condensed mass occurs within particles of different sizes and chemical composition. The applications of interest to the authors are those of atmospheric importance such as cloud droplet formation and reflection or absorption of solar radiation.
Samuel Lowe, Daniel G. Partridge, David Topping, and Philip Stier
Atmos. Chem. Phys., 16, 10941–10963, https://doi.org/10.5194/acp-16-10941-2016, https://doi.org/10.5194/acp-16-10941-2016, 2016
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A novel inverse modelling framework is developed for analysing the sensitivity of cloud condensation nuclei (CCN) concentrations to simultaneous perturbations in multiple model parameters at atmospherically relevant humidities. Many parameter interactions are identified and CCN concentrations are found to be relatively insensitive to bulk–surface partitioning, while aerosol concentration, surface tension, composition and solution ideality exhibit a higher degree of sensitivity.
James D. Whitehead, Eoghan Darbyshire, Joel Brito, Henrique M. J. Barbosa, Ian Crawford, Rafael Stern, Martin W. Gallagher, Paul H. Kaye, James D. Allan, Hugh Coe, Paulo Artaxo, and Gordon McFiggans
Atmos. Chem. Phys., 16, 9727–9743, https://doi.org/10.5194/acp-16-9727-2016, https://doi.org/10.5194/acp-16-9727-2016, 2016
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We present measurements of aerosols during the transition from wet to dry seasons at a pristine rainforest site in central Amazonia. By excluding pollution episodes, we focus on natural biogenic aerosols. Submicron aerosols are dominated by organic material, similar to previous wet season measurements. Larger particles are dominated by biological material, mostly fungal spores, with higher concentrations at night. This study provides important data on the nature of particles above the Amazon.
Scott Archer-Nicholls, Douglas Lowe, David M. Schultz, and Gordon McFiggans
Atmos. Chem. Phys., 16, 5573–5594, https://doi.org/10.5194/acp-16-5573-2016, https://doi.org/10.5194/acp-16-5573-2016, 2016
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The response of the Weather Research and Forecasting model with Chemistry to forcings by biomass burning aerosol were investigated in high-resolution nested domains over Brazil. The aerosol-layer was found to have a negative direct effect at the top of the atmosphere, but this was largely cancelled by a semi-direct effect which inhibited afternoon cloud formation. The cloud response to the aerosol was found to be highly sensitive to model resolution and the use of convective parameterisation.
Simon O'Meara, David O. Topping, and Gordon McFiggans
Atmos. Chem. Phys., 16, 5299–5313, https://doi.org/10.5194/acp-16-5299-2016, https://doi.org/10.5194/acp-16-5299-2016, 2016
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To understand the effect of atmospheric particulate matter on climate and human health we need to know how it evolves. We investigate how best to estimate diffusion of components through particles by comparing diffusion times from three approaches to solving Fick's Law and find that they agree. This means that scientists can simulate Fickian diffusion through atmospheric particles using the approach best suited to their requirements and have confidence that their model is mathematically sound.
Renee C. McVay, Xuan Zhang, Bernard Aumont, Richard Valorso, Marie Camredon, Yuyi S. La, Paul O. Wennberg, and John H. Seinfeld
Atmos. Chem. Phys., 16, 2785–2802, https://doi.org/10.5194/acp-16-2785-2016, https://doi.org/10.5194/acp-16-2785-2016, 2016
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Secondary organic aerosol (SOA) affects climate change, human health, and cloud formation. We examine SOA formation from the biogenic hydrocarbon α-pinene and observe unexpected experimental results that run contrary to model predictions. Various processes are explored via modeling to rationalize the observations. The paper identifies the importance of further constraining via experiments various steps in the chemical mechanism in order to accurately predict SOA worldwide.
Y. S. La, M. Camredon, P. J. Ziemann, R. Valorso, A. Matsunaga, V. Lannuque, J. Lee-Taylor, A. Hodzic, S. Madronich, and B. Aumont
Atmos. Chem. Phys., 16, 1417–1431, https://doi.org/10.5194/acp-16-1417-2016, https://doi.org/10.5194/acp-16-1417-2016, 2016
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The potential impact of chamber walls on the loss of gaseous organic species and secondary organic aerosol (SOA) formation has been explored using the GECKO-A modeling tool, which explicitly represents SOA formation and gas-wall partitioning. The model was compared with 41 smog chamber experiments of SOA formation under OH oxidation of alkane and alkene serie. The organic vapor loss to the chamber walls is found to affect SOA yields as well as the composition of the gas and the particle phase.
I. Crawford, S. Ruske, D. O. Topping, and M. W. Gallagher
Atmos. Meas. Tech., 8, 4979–4991, https://doi.org/10.5194/amt-8-4979-2015, https://doi.org/10.5194/amt-8-4979-2015, 2015
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HCA analysis methods were evaluated for the purpose of identifying primary biological aerosol sampled with a WIBS. The ward linkage with z-score normalisation could discriminate between five test particles with 98% accuracy. We applied these methods to a previously studied ambient data set, where both methods produced similar results with some minor differences in cluster partitioning. Finally we compared to previous approaches and found our new method offered improved quantification of PBA.
M. Paramonov, V.-M. Kerminen, M. Gysel, P. P. Aalto, M. O. Andreae, E. Asmi, U. Baltensperger, A. Bougiatioti, D. Brus, G. P. Frank, N. Good, S. S. Gunthe, L. Hao, M. Irwin, A. Jaatinen, Z. Jurányi, S. M. King, A. Kortelainen, A. Kristensson, H. Lihavainen, M. Kulmala, U. Lohmann, S. T. Martin, G. McFiggans, N. Mihalopoulos, A. Nenes, C. D. O'Dowd, J. Ovadnevaite, T. Petäjä, U. Pöschl, G. C. Roberts, D. Rose, B. Svenningsson, E. Swietlicki, E. Weingartner, J. Whitehead, A. Wiedensohler, C. Wittbom, and B. Sierau
Atmos. Chem. Phys., 15, 12211–12229, https://doi.org/10.5194/acp-15-12211-2015, https://doi.org/10.5194/acp-15-12211-2015, 2015
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The research paper presents the first comprehensive overview of field measurements with the CCN Counter performed at a large number of locations around the world within the EUCAARI framework. The paper sheds light on the CCN number concentrations and activated fractions around the world and their dependence on the water vapour supersaturation ratio, the dependence of aerosol hygroscopicity on particle size, and seasonal and diurnal variation of CCN activation and hygroscopic properties.
A. Hodzic, S. Madronich, P. S. Kasibhatla, G. Tyndall, B. Aumont, J. L. Jimenez, J. Lee-Taylor, and J. Orlando
Atmos. Chem. Phys., 15, 9253–9269, https://doi.org/10.5194/acp-15-9253-2015, https://doi.org/10.5194/acp-15-9253-2015, 2015
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Our study combines process and global chemistry modeling to investigate the potential effect of gas- and particle-phase organic photolysis reactions on the formation and lifetime of secondary organic aerosols (SOAs). Photolysis of the oxidation intermediates that partition between gas and particle phases to form SOA is not included in 3D models. Our results suggest that exposure to UV light can suppress the formation of SOA or even lead to its substantial loss (comparable to wet deposition).
J. D. Allan, P. I. Williams, J. Najera, J. D. Whitehead, M. J. Flynn, J. W. Taylor, D. Liu, E. Darbyshire, L. J. Carpenter, R. Chance, S. J. Andrews, S. C. Hackenberg, and G. McFiggans
Atmos. Chem. Phys., 15, 5599–5609, https://doi.org/10.5194/acp-15-5599-2015, https://doi.org/10.5194/acp-15-5599-2015, 2015
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New particle formation (NPF) is an important contributor to aerosol number concentrations in the Arctic and thus has a major role in dictating cloud properties and climate in this region. Here we present direct evidence that the oxidation of iodine in the atmosphere causes NPF in the Greenland Sea. This is important because this is a NPF mechanism that has not previously been considered in modelling studies at these latitudes.
M. D. Jolleys, H. Coe, G. McFiggans, J. W. Taylor, S. J. O'Shea, M. Le Breton, S. J.-B. Bauguitte, S. Moller, P. Di Carlo, E. Aruffo, P. I. Palmer, J. D. Lee, C. J. Percival, and M. W. Gallagher
Atmos. Chem. Phys., 15, 3077–3095, https://doi.org/10.5194/acp-15-3077-2015, https://doi.org/10.5194/acp-15-3077-2015, 2015
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Particulate emissions in the form of organic aerosol from boreal forest fires in Canada have been measured during an aircraft measurement campaign. Ratios of the amount of aerosol emitted relative to gas species such as CO were calculated and show high levels of variability throughout the campaign. This variability is affected by both changes in fire conditions, as fires tended to die down later in the measurement period, and by changes to the aerosol due to chemical reactions in the atmosphere.
S. Archer-Nicholls, D. Lowe, E. Darbyshire, W. T. Morgan, M. M. Bela, G. Pereira, J. Trembath, J. W. Kaiser, K. M. Longo, S. R. Freitas, H. Coe, and G. McFiggans
Geosci. Model Dev., 8, 549–577, https://doi.org/10.5194/gmd-8-549-2015, https://doi.org/10.5194/gmd-8-549-2015, 2015
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The regional WRF-Chem model was used to study aerosol particles from biomass burning in South America. The modelled estimates of fire plume injection heights were found to be too high, with serious implications for modelled aerosol vertical distribution, transport and impacts on local climate. A modified emission scenario was developed which improved the predicted injection height. Model results were compared and evaluated against in situ measurements from the 2012 SAMBBA flight campaign.
D. Lowe, S. Archer-Nicholls, W. Morgan, J. Allan, S. Utembe, B. Ouyang, E. Aruffo, M. Le Breton, R. A. Zaveri, P. Di Carlo, C. Percival, H. Coe, R. Jones, and G. McFiggans
Atmos. Chem. Phys., 15, 1385–1409, https://doi.org/10.5194/acp-15-1385-2015, https://doi.org/10.5194/acp-15-1385-2015, 2015
C. Denjean, P. Formenti, B. Picquet-Varrault, M. Camredon, E. Pangui, P. Zapf, Y. Katrib, C. Giorio, A. Tapparo, B. Temime-Roussel, A. Monod, B. Aumont, and J. F. Doussin
Atmos. Chem. Phys., 15, 883–897, https://doi.org/10.5194/acp-15-883-2015, https://doi.org/10.5194/acp-15-883-2015, 2015
J. Lee-Taylor, A. Hodzic, S. Madronich, B. Aumont, M. Camredon, and R. Valorso
Atmos. Chem. Phys., 15, 595–615, https://doi.org/10.5194/acp-15-595-2015, https://doi.org/10.5194/acp-15-595-2015, 2015
J. D. Whitehead, M. Irwin, J. D. Allan, N. Good, and G. McFiggans
Atmos. Chem. Phys., 14, 11833–11841, https://doi.org/10.5194/acp-14-11833-2014, https://doi.org/10.5194/acp-14-11833-2014, 2014
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Water uptake of ambient particles was measured by 2 independent techniques at a wide range of locations between 2007 and 2013. The agreement between the techniques was mixed and hence the number of potential cloud seeds calculated from the measurements frequently showed discrepancies. Whilst there is sensitivity to how well we measure the size of the particles, much of the difference depends on how the particles behave when exposed to moisture in the different techniques (and in the atmosphere).
S. Archer-Nicholls, D. Lowe, S. Utembe, J. Allan, R. A. Zaveri, J. D. Fast, Ø. Hodnebrog, H. Denier van der Gon, and G. McFiggans
Geosci. Model Dev., 7, 2557–2579, https://doi.org/10.5194/gmd-7-2557-2014, https://doi.org/10.5194/gmd-7-2557-2014, 2014
M. J. Lawler, J. Whitehead, C. O'Dowd, C. Monahan, G. McFiggans, and J. N. Smith
Atmos. Chem. Phys., 14, 11557–11569, https://doi.org/10.5194/acp-14-11557-2014, https://doi.org/10.5194/acp-14-11557-2014, 2014
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This work describes the chemical and physical characterization of very small (< 100 nm diameter) particles in the marine atmosphere. We show that sea salt is present even at very small sizes and present evidence that organic species are important contributors to apparent new particle formation events over the ocean.
E. Simpson, P. Connolly, and G. McFiggans
Geosci. Model Dev., 7, 1535–1542, https://doi.org/10.5194/gmd-7-1535-2014, https://doi.org/10.5194/gmd-7-1535-2014, 2014
V. Michoud, A. Colomb, A. Borbon, K. Miet, M. Beekmann, M. Camredon, B. Aumont, S. Perrier, P. Zapf, G. Siour, W. Ait-Helal, C. Afif, A. Kukui, M. Furger, J. C. Dupont, M. Haeffelin, and J. F. Doussin
Atmos. Chem. Phys., 14, 2805–2822, https://doi.org/10.5194/acp-14-2805-2014, https://doi.org/10.5194/acp-14-2805-2014, 2014
P. J. Connolly, D. O. Topping, F. Malavelle, and G. McFiggans
Atmos. Chem. Phys., 14, 2289–2302, https://doi.org/10.5194/acp-14-2289-2014, https://doi.org/10.5194/acp-14-2289-2014, 2014
M. R. Alfarra, N. Good, K. P. Wyche, J. F. Hamilton, P. S. Monks, A. C. Lewis, and G. McFiggans
Atmos. Chem. Phys., 13, 11769–11789, https://doi.org/10.5194/acp-13-11769-2013, https://doi.org/10.5194/acp-13-11769-2013, 2013
J. F. Hamilton, M. R. Alfarra, N. Robinson, M. W. Ward, A. C. Lewis, G. B. McFiggans, H. Coe, and J. D. Allan
Atmos. Chem. Phys., 13, 11295–11305, https://doi.org/10.5194/acp-13-11295-2013, https://doi.org/10.5194/acp-13-11295-2013, 2013
D. Liu, J. Allan, J. Whitehead, D. Young, M. Flynn, H. Coe, G. McFiggans, Z. L. Fleming, and B. Bandy
Atmos. Chem. Phys., 13, 2015–2029, https://doi.org/10.5194/acp-13-2015-2013, https://doi.org/10.5194/acp-13-2015-2013, 2013
C. Mouchel-Vallon, P. Bräuer, M. Camredon, R. Valorso, S. Madronich, H. Herrmann, and B. Aumont
Atmos. Chem. Phys., 13, 1023–1037, https://doi.org/10.5194/acp-13-1023-2013, https://doi.org/10.5194/acp-13-1023-2013, 2013
V. Michoud, A. Kukui, M. Camredon, A. Colomb, A. Borbon, K. Miet, B. Aumont, M. Beekmann, R. Durand-Jolibois, S. Perrier, P. Zapf, G. Siour, W. Ait-Helal, N. Locoge, S. Sauvage, C. Afif, V. Gros, M. Furger, G. Ancellet, and J. F. Doussin
Atmos. Chem. Phys., 12, 11951–11974, https://doi.org/10.5194/acp-12-11951-2012, https://doi.org/10.5194/acp-12-11951-2012, 2012
Related subject area
Atmospheric sciences
OpenIFS@home version 1: a citizen science project for ensemble weather and climate forecasting
Regional CO2 inversions with LUMIA, the Lund University Modular Inversion Algorithm, v1.0
The Detailed Emissions Scaling, Isolation, and Diagnostic (DESID) module in the Community Multiscale Air Quality (CMAQ) modeling system version 5.3.2
Evaluation of the dynamic core of the PALM model system 6.0 in a neutrally stratified urban environment: comparison between LES and wind-tunnel experiments
Implementing a sectional scheme for early aerosol growth from new particle formation in the Norwegian Earth System Model v2: comparison to observations and climate impacts
Limitations of WRF land surface models for simulating land use and land cover change in Sub-Saharan Africa and development of an improved model (CLM-AF v. 1.0)
Simulation of O3 and NOx in São Paulo street urban canyons with VEIN (v0.2.2) and MUNICH (v1.0)
A case study of wind farm effects using two wake parameterizations in the Weather Research and Forecasting (WRF) model (V3.7.1) in the presence of low-level jets
Radiative Transfer Model 3.0 integrated into the PALM model system 6.0
Development and evaluation of CO2 transport in MPAS-A v6.3
Variational regional inverse modeling of reactive species emissions with PYVAR-CHIMERE-v2019
A new gas absorption optical depth parameterisation for RTTOV version 13
The Community Multiscale Air Quality (CMAQ) model versions 5.3 and 5.3.1: system updates and evaluation
Development and evaluation of spectral nudging strategy for the simulation of summer precipitation over the Tibetan Plateau using WRF (v4.0)
Combining homogeneous and heterogeneous chemistry to model inorganic compound concentrations in indoor environments: the H2I model (v1.0)
Interpol-IAGOS: a new method for assessing long-term chemistry–climate simulations in the UTLS based on IAGOS data, and its application to the MOCAGE CCMI REF-C1SD simulation
The Environment and Climate Change Canada Carbon Assimilation System (EC-CAS v1.0): demonstration with simulated CO observations
WRF4PALM v1.0: a mesoscale dynamical driver for the microscale PALM model system 6.0
pyPI (v1.3): Tropical Cyclone Potential Intensity Calculations in Python
Comparison of three aerosol representations of NHM-Chem (v1.0) for the simulations of air quality and climate-relevant variables
JlBox v1.1: a Julia-based multi-phase atmospheric chemistry box model
A new Lagrangian in-time particle simulation module (Itpas v1) for atmospheric particle dispersion
Effects of black carbon morphology on brown carbon absorption estimation: from numerical aspects
Simulation of the evolution of biomass burning organic aerosol with different volatility basis set schemes in PMCAMx-SRv1.0
Novel estimation of aerosol processes with particle size distribution measurements: a case study with the TOMAS algorithm v1.0.0
Evaluation of ECMWF IFS-AER (CAMS) operational forecasts during cycle 41r1–46r1 with calibrated ceilometer profiles over Germany
Influence of biomass burning vapor wall loss correction on modeling organic aerosols in Europe by CAMx v6.50
Seasonal and diurnal performance of daily forecasts with WRF V3.8.1 over the United Arab Emirates
MLAir (v1.0) – a tool to enable fast and flexible machine learning on air data time series
snowScatt 1.0: consistent model of microphysical and scattering properties of rimed and unrimed snowflakes based on the self-similar Rayleigh–Gans approximation
Effects of spatial resolution on WRF v3.8.1 simulated meteorology over the central Himalaya
On the suitability of second-order accurate finite-volume solvers for the simulation of atmospheric boundary layer flow
An urban large-eddy-simulation-based dispersion model for marginal grid resolutions: CAIRDIO v1.0
Applying a new integrated mass-flux adjustment filter in rapid update cycling of convective-scale data assimilation for the COSMO model (v5.07)
On the model uncertainties in Bayesian source reconstruction using an ensemble of weather predictions, the emission inverse modelling system FREAR v1.0, and the Lagrangian transport and dispersion model Flexpart v9.0.2
Evaluation of the interactive stratospheric ozone (O3v2) module in the E3SM version 1 Earth system model
Development of an atmospheric chemistry model coupled to the PALM model system 6.0: implementation and first applications
The Vertical City Weather Generator (VCWG v1.3.2)
A zero-dimensional view of atmospheric degradation of levoglucosan (LEVCHEM_v1) using numerical chamber simulations
WRF-GC (v2.0): online two-way coupling of WRF (v3.9.1.1) and GEOS-Chem (v12.7.2) for modeling regional atmospheric chemistry-meteorology interactions
The Nonhydrostatic ICosahedral Atmospheric Model for CMIP6 HighResMIP simulations (NICAM16-S): experimental design, model description, and impacts of model updates
Using radar observations to evaluate 3-D radar echo structure simulated by the Energy Exascale Earth System Model (E3SM) version 1
Development of WRF/CUACE v1.0 model and its preliminary application in simulating air quality in China
PyCHAM (v2.1.1): a Python box model for simulating aerosol chambers
Surface representation impacts on turbulent heat fluxes in WRF (v.4.1.3)
A revised dry deposition scheme for land–atmosphere exchange of trace gases in ECHAM/MESSy v2.54
Investigating the importance of sub-grid particle formation in point source plumes over eastern China using IAP-AACM with a sub-grid parameterization
Improving dust simulations in WRF-Chem v4.1.3 coupled with the GOCART aerosol module
FALL3D-8.0: a computational model for atmospheric transport and deposition of particles, aerosols and radionuclides – Part 2: Model validation
Implementation of a synthetic inflow turbulence generator in idealised WRF v3.6.1 large eddy simulations under neutral atmospheric conditions
Sarah Sparrow, Andrew Bowery, Glenn D. Carver, Marcus O. Köhler, Pirkka Ollinaho, Florian Pappenberger, David Wallom, and Antje Weisheimer
Geosci. Model Dev., 14, 3473–3486, https://doi.org/10.5194/gmd-14-3473-2021, https://doi.org/10.5194/gmd-14-3473-2021, 2021
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This paper describes how the research version of the European Centre for Medium-Range Weather Forecasts’ Integrated Forecast System is combined with climateprediction.net’s public volunteer computing resource to develop OpenIFS@home. Thousands of volunteer personal computers simulated slightly different realizations of Tropical Cyclone Karl to demonstrate the performance of the large-ensemble forecast. OpenIFS@Home offers researchers a new tool to study weather forecasts and related questions.
Guillaume Monteil and Marko Scholze
Geosci. Model Dev., 14, 3383–3406, https://doi.org/10.5194/gmd-14-3383-2021, https://doi.org/10.5194/gmd-14-3383-2021, 2021
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LUMIA is a Python library for atmospheric inversions, originally developed at Lund University to perform regional atmospheric CO2 inversions. The inversions rely on coupling the regional transport model FLEXPART and the global transport model TM5. The paper presents the modeling setup and some first results, and it introduces the LUMIA Python package as a toolbox for inversions beyond the use case presented in the paper.
Benjamin N. Murphy, Christopher G. Nolte, Fahim Sidi, Jesse O. Bash, K. Wyat Appel, Carey Jang, Daiwen Kang, James Kelly, Rohit Mathur, Sergey Napelenok, George Pouliot, and Havala O. T. Pye
Geosci. Model Dev., 14, 3407–3420, https://doi.org/10.5194/gmd-14-3407-2021, https://doi.org/10.5194/gmd-14-3407-2021, 2021
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The algorithms for applying air pollution emission rates in the Community Multiscale Air Quality (CMAQ) model have been improved to better support users and developers. The new features accommodate emissions perturbation studies that are typical in atmospheric research and output a wealth of metadata for each model run so assumptions can be verified and documented. The new approach dramatically enhances the transparency and functionality of this critical aspect of atmospheric modeling.
Tobias Gronemeier, Kerstin Surm, Frank Harms, Bernd Leitl, Björn Maronga, and Siegfried Raasch
Geosci. Model Dev., 14, 3317–3333, https://doi.org/10.5194/gmd-14-3317-2021, https://doi.org/10.5194/gmd-14-3317-2021, 2021
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We demonstrate the capability of the PALM model system version 6.0 to simulate urban boundary layers. The studied situation includes a real-world building setup of the HafenCity area in Hamburg, Germany. We evaluate the simulation results against wind-tunnel measurements utilizing PALM's virtual measurement module. The comparison reveals an overall high agreement between simulation results and wind-tunnel measurements including mean wind speed and direction as well as turbulence statistics.
Sara M. Blichner, Moa K. Sporre, Risto Makkonen, and Terje K. Berntsen
Geosci. Model Dev., 14, 3335–3359, https://doi.org/10.5194/gmd-14-3335-2021, https://doi.org/10.5194/gmd-14-3335-2021, 2021
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Aerosol–cloud interactions are the largest contributor to climate forcing uncertainty. In this study we combine two common approaches to aerosol representation in global models: a sectional scheme, which is closer to first principals, for the smallest particles forming in the atmosphere and a log-modal scheme, which is faster, for the larger particles. With this approach, we improve the aerosol representation compared to observations, while only increasing the computational cost by 15 %.
Timothy Glotfelty, Diana Ramírez-Mejía, Jared Bowden, Adrian Ghilardi, and J. Jason West
Geosci. Model Dev., 14, 3215–3249, https://doi.org/10.5194/gmd-14-3215-2021, https://doi.org/10.5194/gmd-14-3215-2021, 2021
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Land use and land cover change is a major contributor to climate change in Africa. Here we document deficiencies in how a weather model represents the land surface of Africa and how we modify a common land surface model to overcome these deficiencies. Our tests reveal that the default weather model does not accurately predict and transition the properties of different African biomes and growing cycles. This paper demonstrates that our modified model addresses these limitations.
Mario Eduardo Gavidia-Calderón, Sergio Ibarra-Espinosa, Youngseob Kim, Yang Zhang, and Maria de Fatima Andrade
Geosci. Model Dev., 14, 3251–3268, https://doi.org/10.5194/gmd-14-3251-2021, https://doi.org/10.5194/gmd-14-3251-2021, 2021
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The MUNICH model was used to calculate pollutant concentrations inside the streets of São Paulo. The VEIN emission model provided the vehicular emissions and the coordinates of the streets. We used information from an air quality station to account for pollutant concentrations over the street rooftops. Results showed that when emissions are calibrated, MUNICH satisfied the performance criteria. MUNICH can be used to evaluate the impact of traffic-related air pollution on public health.
Xiaoli G. Larsén and Jana Fischereit
Geosci. Model Dev., 14, 3141–3158, https://doi.org/10.5194/gmd-14-3141-2021, https://doi.org/10.5194/gmd-14-3141-2021, 2021
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For the first time, turbulent kinetic energy (TKE) calculated from the explicit wake parameterization (EWP) in WRF is examined using high-frequency measurements over a wind farm and compared with that calculated using the Fitch et al. (2012) scheme. We examined the effect of farm-induced TKE advection in connection with the Fitch scheme. Through a case study with a low-level jet (LLJ), we analyzed the key features of LLJs and raised the issue of interaction between wind farms and LLJs.
Pavel Krč, Jaroslav Resler, Matthias Sühring, Sebastian Schubert, Mohamed H. Salim, and Vladimír Fuka
Geosci. Model Dev., 14, 3095–3120, https://doi.org/10.5194/gmd-14-3095-2021, https://doi.org/10.5194/gmd-14-3095-2021, 2021
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The adverse effects of an urban environment, e.g. heat stress and air pollution, pose a risk to health and well-being. Precise modelling of the urban climate is crucial to mitigate these effects. Conventional atmospheric models are inadequate for modelling the complex structures of the urban environment; in particular, they lack a 3-D model of radiation and its interaction with surfaces and the plant canopy. The new RTM simulates these processes within the PALM-4U urban climate model.
Tao Zheng, Sha Feng, Kenneth J. Davis, Sandip Pal, and Josep-Anton Morguí
Geosci. Model Dev., 14, 3037–3066, https://doi.org/10.5194/gmd-14-3037-2021, https://doi.org/10.5194/gmd-14-3037-2021, 2021
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Carbon dioxide is the most important greenhouse gas. We develop the numerical model that represents carbon dioxide transport in the atmosphere. This model development is based on the MPAS model, which has a variable-resolution capability. The purpose of developing carbon dioxide transport in MPAS is to allow for high-resolution transport model simulation that is not limited by the lateral boundaries. It will also form the base for a future development of MPAS-based carbon inversion system.
Audrey Fortems-Cheiney, Isabelle Pison, Grégoire Broquet, Gaëlle Dufour, Antoine Berchet, Elise Potier, Adriana Coman, Guillaume Siour, and Lorenzo Costantino
Geosci. Model Dev., 14, 2939–2957, https://doi.org/10.5194/gmd-14-2939-2021, https://doi.org/10.5194/gmd-14-2939-2021, 2021
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Up-to-date and accurate emission inventories for air pollutants are essential for understanding their role in the formation of tropospheric ozone and particulate matter, for anticipating pollution peaks and for identifying the key drivers that could help mitigate their emissions. Complementarily with bottom-up inventories, the system described here aims at updating and improving the knowledge on the high spatiotemporal variability of emissions of air pollutants.
James Hocking, Jérôme Vidot, Pascal Brunel, Pascale Roquet, Bruna Silveira, Emma Turner, and Cristina Lupu
Geosci. Model Dev., 14, 2899–2915, https://doi.org/10.5194/gmd-14-2899-2021, https://doi.org/10.5194/gmd-14-2899-2021, 2021
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RTTOV is a fast radiative transfer model for simulating passive satellite-based observations at visible, infrared, and microwave wavelengths. A core part of the model is a parameterisation of the absorption of radiation by the various gases present in the atmosphere. We present a new parameterisation that performs well compared to the existing one in terms of accuracy and can be developed further more easily. The new parameterisation is implemented in the latest release, RTTOV v13.0.
K. Wyat Appel, Jesse O. Bash, Kathleen M. Fahey, Kristen M. Foley, Robert C. Gilliam, Christian Hogrefe, William T. Hutzell, Daiwen Kang, Rohit Mathur, Benjamin N. Murphy, Sergey L. Napelenok, Christopher G. Nolte, Jonathan E. Pleim, George A. Pouliot, Havala O. T. Pye, Limei Ran, Shawn J. Roselle, Golam Sarwar, Donna B. Schwede, Fahim I. Sidi, Tanya L. Spero, and David C. Wong
Geosci. Model Dev., 14, 2867–2897, https://doi.org/10.5194/gmd-14-2867-2021, https://doi.org/10.5194/gmd-14-2867-2021, 2021
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This paper details the scientific updates in the recently released CMAQ version 5.3 (and v5.3.1) and also includes operational and diagnostic evaluations of CMAQv5.3.1 against observations and the previous version of the CMAQ (v5.2.1). This work was done to improve the underlying science in CMAQ. This article is used to inform the CMAQ modeling community of the updates to the modeling system and the expected change in model performance from these updates (versus the previous model version).
Ziyu Huang, Lei Zhong, Yaoming Ma, and Yunfei Fu
Geosci. Model Dev., 14, 2827–2841, https://doi.org/10.5194/gmd-14-2827-2021, https://doi.org/10.5194/gmd-14-2827-2021, 2021
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Spectral nudging is an effective dynamical downscaling method used to improve precipitation simulations of regional climate models (RCMs). However, the biases of the driving fields over the Tibetan Plateau (TP) would possibly introduce extra biases when spectral nudging is applied. The results show that the precipitation simulations were significantly improved when limiting the application of spectral nudging toward the potential temperature and water vapor mixing ratio over the TP.
Eve-Agnès Fiorentino, Henri Wortham, and Karine Sartelet
Geosci. Model Dev., 14, 2747–2780, https://doi.org/10.5194/gmd-14-2747-2021, https://doi.org/10.5194/gmd-14-2747-2021, 2021
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Indoor air quality (IAQ) is strongly influenced by reactivity with surfaces, which is called heterogeneous reactivity. To date, this reactivity is barely integrated into numerical models due to the strong uncertainties it is subjected to. In this work, an open-source IAQ model, called the H2I model, is developed to consider both gas-phase and heterogeneous reactivity and simulate indoor concentrations of inorganic compounds.
Yann Cohen, Virginie Marécal, Béatrice Josse, and Valérie Thouret
Geosci. Model Dev., 14, 2659–2689, https://doi.org/10.5194/gmd-14-2659-2021, https://doi.org/10.5194/gmd-14-2659-2021, 2021
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Assessing long-term chemistry–climate simulations with in situ and frequent observations near the tropopause is possible with the IAGOS commercial aircraft data set. This study presents a method that distributes the IAGOS data (ozone and CO) on a monthly model grid, limiting the impact of resolution for the evaluation of the modelled chemical fields. We applied it to the CCMI REF-C1SD simulation from the MOCAGE CTM and notably highlighted well-reproduced O3 behaviour in the lower stratosphere.
Vikram Khade, Saroja M. Polavarapu, Michael Neish, Pieter L. Houtekamer, Dylan B. A. Jones, Seung-Jong Baek, Tai-Long He, and Sylvie Gravel
Geosci. Model Dev., 14, 2525–2544, https://doi.org/10.5194/gmd-14-2525-2021, https://doi.org/10.5194/gmd-14-2525-2021, 2021
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A new modeling system has been developed at Environment and Climate Change Canada to ingest observations of carbon monoxide (CO) into a coupled weather and constituent transport model. We show that accounting for the uncertainty in surface flux leads to a better estimate of CO distributions. The benefit of assimilating observations from different simulated networks varies with region. This is the first step towards developing a state and flux estimation system for greenhouse gases.
Dongqi Lin, Basit Khan, Marwan Katurji, Leroy Bird, Ricardo Faria, and Laura E. Revell
Geosci. Model Dev., 14, 2503–2524, https://doi.org/10.5194/gmd-14-2503-2021, https://doi.org/10.5194/gmd-14-2503-2021, 2021
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We present an open-source toolbox WRF4PALM, which enables weather dynamics simulation within urban landscapes. WRF4PALM passes meteorological information from the popular Weather Research and Forecasting (WRF) model to the turbulence-resolving PALM model system 6.0. WRF4PALM can potentially extend the use of WRF and PALM with realistic boundary conditions to any part of the world. WRF4PALM will help study air pollution dispersion, wind energy prospecting, and high-impact wind forecasting.
Daniel M. Gilford
Geosci. Model Dev., 14, 2351–2369, https://doi.org/10.5194/gmd-14-2351-2021, https://doi.org/10.5194/gmd-14-2351-2021, 2021
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Potential intensity (PI) is a tropical cyclone's maximum speed limit given by modeling the storm as a thermal heat engine. pyPI is the first software package fully documenting the PI algorithm and translating it to Python. This study details/validates the underlying PI model and demonstrates its use in tropical cyclone intensity research. pyPI supports open science and transparency in the tropical meteorological community and is ideally suited for ongoing community development and improvement.
Mizuo Kajino, Makoto Deushi, Tsuyoshi Thomas Sekiyama, Naga Oshima, Keiya Yumimoto, Taichu Yasumichi Tanaka, Joseph Ching, Akihiro Hashimoto, Tetsuya Yamamoto, Masaaki Ikegami, Akane Kamada, Makoto Miyashita, Yayoi Inomata, Shin-ichiro Shima, Pradeep Khatri, Atsushi Shimizu, Hitoshi Irie, Kouji Adachi, Yuji Zaizen, Yasuhito Igarashi, Hiromasa Ueda, Takashi Maki, and Masao Mikami
Geosci. Model Dev., 14, 2235–2264, https://doi.org/10.5194/gmd-14-2235-2021, https://doi.org/10.5194/gmd-14-2235-2021, 2021
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This study compares performance of aerosol representation methods of the Japan Meteorological Agency's regional-scale nonhydrostatic meteorology–chemistry model (NHM-Chem). It indicates separate treatment of sea salt and dust in coarse mode and that of light-absorptive and non-absorptive particles in fine mode could provide accurate assessments on aerosol feedback processes.
Langwen Huang and David Topping
Geosci. Model Dev., 14, 2187–2203, https://doi.org/10.5194/gmd-14-2187-2021, https://doi.org/10.5194/gmd-14-2187-2021, 2021
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As our knowledge and understanding of atmospheric aerosol particle evolution and impact grows, designing community mechanistic models requires an ability to capture increasing chemical, physical and therefore numerical complexity. As the landscape of computing software and hardware evolves, it is important to profile the usefulness of emerging platforms in tackling this complexity. With this in mind we present JlBox v1.1, written in Julia.
Matthias Faust, Ralf Wolke, Steffen Münch, Roger Funk, and Kerstin Schepanski
Geosci. Model Dev., 14, 2205–2220, https://doi.org/10.5194/gmd-14-2205-2021, https://doi.org/10.5194/gmd-14-2205-2021, 2021
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Trajectory dispersion models are powerful and intuitive tools for tracing air pollution through the atmosphere. But the turbulent nature of the atmospheric boundary layer makes it challenging to provide accurate predictions near the surface. To overcome this, we propose an approach using wind and turbulence information at high temporal resolution. Finally, we demonstrate the strength of our approach in a case study on dust emissions from agriculture.
Jie Luo, Yongming Zhang, and Qixing Zhang
Geosci. Model Dev., 14, 2113–2126, https://doi.org/10.5194/gmd-14-2113-2021, https://doi.org/10.5194/gmd-14-2113-2021, 2021
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In this work, we developed a numerical method to investigate the effects of black carbon (BC) morphology on the estimation of brown carbon (BrC) absorption using the absorption Ångström exponent (AAE) method. We found that BC morphologies have significant impacts on the estimated BrC absorptions. Moreover, we have demonstrated under what conditions the AAE methods can provide good or bad estimations and explored the reasons for why the good or bad estimations were caused.
Georgia N. Theodoritsi, Giancarlo Ciarelli, and Spyros N. Pandis
Geosci. Model Dev., 14, 2041–2055, https://doi.org/10.5194/gmd-14-2041-2021, https://doi.org/10.5194/gmd-14-2041-2021, 2021
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Two schemes based on the volatility basis set were used for the simulation of biomass burning organic aerosol (bbOA) in the continental US. The first is the default scheme of the PMCAMx-SR model, and the second is a recently developed scheme based on laboratory experiments. The alternative bbOA scheme predicts much higher concentrations. The default scheme performed better during summer and fall, while the alternative scheme was a little better during spring.
Dana L. McGuffin, Yuanlong Huang, Richard C. Flagan, Tuukka Petäjä, B. Erik Ydstie, and Peter J. Adams
Geosci. Model Dev., 14, 1821–1839, https://doi.org/10.5194/gmd-14-1821-2021, https://doi.org/10.5194/gmd-14-1821-2021, 2021
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Atmospheric particle formation, emissions, and growth process rates are significant sources of uncertainty in predicting climate change. We aim to reduce that uncertainty by using measurements from several ground-based sites across Europe. We developed an estimation technique to adapt the governing process rates so model–measurement bias decays. The estimation framework developed has potential to improve model predictions while providing insight into the underlying atmospheric particle physics.
Harald Flentje, Ina Mattis, Zak Kipling, Samuel Rémy, and Werner Thomas
Geosci. Model Dev., 14, 1721–1751, https://doi.org/10.5194/gmd-14-1721-2021, https://doi.org/10.5194/gmd-14-1721-2021, 2021
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Atmospheric aerosols crucially impact air quality, climate and weather. Thus, global model forecasts of atmospheric constituents are published daily on the ECMWF website and are regularly verified by the CAMS service team. The IFS-AER model is largely able to reproduce observed 3-D distributions of the important particle types over Germany. The particle concentration is mostly captured within several tens of percent, but quantification of some specific processes still remains a challenge.
Jianhui Jiang, Imad El Haddad, Sebnem Aksoyoglu, Giulia Stefenelli, Amelie Bertrand, Nicolas Marchand, Francesco Canonaco, Jean-Eudes Petit, Olivier Favez, Stefania Gilardoni, Urs Baltensperger, and André S. H. Prévôt
Geosci. Model Dev., 14, 1681–1697, https://doi.org/10.5194/gmd-14-1681-2021, https://doi.org/10.5194/gmd-14-1681-2021, 2021
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We developed a box model with a volatility basis set to simulate organic aerosol (OA) from biomass burning and optimized the vapor-wall-loss-corrected OA yields with a genetic algorithm. The optimized parameterizations were then implemented in the air quality model CAMx v6.5. Comparisons with ambient measurements indicate that the vapor-wall-loss-corrected parameterization effectively improves the model performance in predicting OA, which reduced the mean fractional bias from −72.9 % to −1.6 %.
Oliver Branch, Thomas Schwitalla, Marouane Temimi, Ricardo Fonseca, Narendra Nelli, Michael Weston, Josipa Milovac, and Volker Wulfmeyer
Geosci. Model Dev., 14, 1615–1637, https://doi.org/10.5194/gmd-14-1615-2021, https://doi.org/10.5194/gmd-14-1615-2021, 2021
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Effective numerical weather forecasting is vital in arid regions like the United Arab Emirates where extreme events like heat waves, flash floods, and dust storms are becoming more severe. This study employs a high-resolution simulation with the WRF-NOAHMP model, and the output is compared with seasonal observation data from 50 weather stations. This type of verification is vital to identify model deficiencies and improve forecasting systems for arid regions.
Lukas Hubert Leufen, Felix Kleinert, and Martin G. Schultz
Geosci. Model Dev., 14, 1553–1574, https://doi.org/10.5194/gmd-14-1553-2021, https://doi.org/10.5194/gmd-14-1553-2021, 2021
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MLAir provides a coherent end-to-end structure for a typical time series analysis workflow using machine learning (ML). MLAir is adaptable to a wide range of ML use cases, focusing in particular on deep learning. The user has a free hand with the ML model itself and can select from different methods during preprocessing, training, and postprocessing. MLAir offers tools to track the experiment conduction, documents necessary ML parameters, and creates a variety of publication-ready plots.
Davide Ori, Leonie von Terzi, Markus Karrer, and Stefan Kneifel
Geosci. Model Dev., 14, 1511–1531, https://doi.org/10.5194/gmd-14-1511-2021, https://doi.org/10.5194/gmd-14-1511-2021, 2021
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Snowflakes have very complex shapes, and modeling their properties requires vast computing power. We produced a large number of realistic snowflakes and modeled their average properties by leveraging their fractal structure. Our approach allows modeling the properties of big ensembles of snowflakes, taking into account their natural variability, at a much lower cost. This enables the usage of remote sensing instruments, such as radars, to monitor the evolution of clouds and precipitation.
Jaydeep Singh, Narendra Singh, Narendra Ojha, Amit Sharma, Andrea Pozzer, Nadimpally Kiran Kumar, Kunjukrishnapillai Rajeev, Sachin S. Gunthe, and V. Rao Kotamarthi
Geosci. Model Dev., 14, 1427–1443, https://doi.org/10.5194/gmd-14-1427-2021, https://doi.org/10.5194/gmd-14-1427-2021, 2021
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Atmospheric models often have limitations in simulating the geographically complex and climatically important central Himalayan region. In this direction, we have performed regional modeling at high resolutions to improve the simulation of meteorology and dynamics through a better representation of the topography. The study has implications for further model applications to investigate the effects of anthropogenic pressure over the Himalaya.
Beatrice Giacomini and Marco G. Giometto
Geosci. Model Dev., 14, 1409–1426, https://doi.org/10.5194/gmd-14-1409-2021, https://doi.org/10.5194/gmd-14-1409-2021, 2021
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The present work evaluates the suitability of an important class of second-order finite-volume solvers for the large-eddy simulation of atmospheric boundary- layer flows. Results show that these solvers do not capture the dominant mechanisms responsible for momentum transport in boundary layers, leading to a misprediction of relevant flow statistics and to an enhanced sensitivity of the solution to variations in grid resolution.
Michael Weger, Oswald Knoth, and Bernd Heinold
Geosci. Model Dev., 14, 1469–1492, https://doi.org/10.5194/gmd-14-1469-2021, https://doi.org/10.5194/gmd-14-1469-2021, 2021
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A new numerical air-quality transport model for cities is presented, in which buildings are described diffusively. The used diffusive-obstacles approach helps to reduce the computational costs for high-resolution simulations as the grid spacing can be more coarse than in traditional approaches. The research which led to this model development was primarily motivated by the need for a computationally feasible downscaling tool for urban wind and pollution fields from meteorological model output.
Yuefei Zeng, Alberto de Lozar, Tijana Janjic, and Axel Seifert
Geosci. Model Dev., 14, 1295–1307, https://doi.org/10.5194/gmd-14-1295-2021, https://doi.org/10.5194/gmd-14-1295-2021, 2021
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A new integrated mass-flux adjustment filter is introduced and examined with an idealized setup for convective-scale radar data assimilation. It is found that the new filter slightly reduces the accuracy of background and analysis states; however, it preserves the main structure of cold pools and primary mesocyclone properties of supercells. More importantly, it successfully diminishes the imbalance in the analysis considerably and improves the forecasts.
Pieter De Meutter, Ian Hoffman, and Kurt Ungar
Geosci. Model Dev., 14, 1237–1252, https://doi.org/10.5194/gmd-14-1237-2021, https://doi.org/10.5194/gmd-14-1237-2021, 2021
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Inverse atmospheric transport modelling is an important tool in several disciplines. However, the specification of atmospheric transport model error remains challenging. In this paper, we employ a state-of-the-art ensemble technique combined with a state-of-the-art Bayesian inference algorithm to infer point sources. Our research helps to fill the gap in our understanding of model error in the context of inverse atmospheric transport modelling.
Qi Tang, Michael J. Prather, Juno Hsu, Daniel J. Ruiz, Philip J. Cameron-Smith, Shaocheng Xie, and Jean-Christophe Golaz
Geosci. Model Dev., 14, 1219–1236, https://doi.org/10.5194/gmd-14-1219-2021, https://doi.org/10.5194/gmd-14-1219-2021, 2021
Basit Khan, Sabine Banzhaf, Edward C. Chan, Renate Forkel, Farah Kanani-Sühring, Klaus Ketelsen, Mona Kurppa, Björn Maronga, Matthias Mauder, Siegfried Raasch, Emmanuele Russo, Martijn Schaap, and Matthias Sühring
Geosci. Model Dev., 14, 1171–1193, https://doi.org/10.5194/gmd-14-1171-2021, https://doi.org/10.5194/gmd-14-1171-2021, 2021
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An atmospheric chemistry model has been implemented in the microscale PALM model system 6.0. This article provides a detailed description of the model, its structure, input requirements, various features and limitations. Several pre-compiled ready-to-use chemical mechanisms are included in the chemistry model code; however, users can also easily implement other mechanisms. A case study is presented to demonstrate the application of the new chemistry model in the urban environment.
Mohsen Moradi, Benjamin Dyer, Amir Nazem, Manoj K. Nambiar, M. Rafsan Nahian, Bruno Bueno, Chris Mackey, Saeran Vasanthakumar, Negin Nazarian, E. Scott Krayenhoff, Leslie K. Norford, and Amir A. Aliabadi
Geosci. Model Dev., 14, 961–984, https://doi.org/10.5194/gmd-14-961-2021, https://doi.org/10.5194/gmd-14-961-2021, 2021
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The Vertical City Weather Generator (VCWG) is an urban microclimate model developed to predict temporal and vertical variation of potential temperature, wind speed, and specific humidity. VCWG is forced by climate variables at a nearby rural site and coupled to radiation and building energy models. VCWG is evaluated against field observations of the BUBBLE campaign. It is run under exploration mode to assess its performance given urban characteristics, seasonal variations, and climate zones.
Loredana G. Suciu, Robert J. Griffin, and Caroline A. Masiello
Geosci. Model Dev., 14, 907–921, https://doi.org/10.5194/gmd-14-907-2021, https://doi.org/10.5194/gmd-14-907-2021, 2021
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Understanding the atmospheric degradation of biomass burning tracers such as levoglucosan is essential to decreasing uncertainties in the role of biomass burning in air quality, carbon cycling and paleoclimate. Using a 0-D modeling approach and numerical chamber simulations, we found that the multiphase atmospheric degradation of levoglucosan occurs over timescales of hours to days, can form secondary organic aerosols and affects other key tropospheric gases, such as ozone.
Xu Feng, Haipeng Lin, Tzung-May Fu, Melissa P. Sulprizio, Jiawei Zhuang, Daniel J. Jacob, Heng Tian, Yaping Ma, Lijuan Zhang, Xiaolin Wang, and Qi Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-441, https://doi.org/10.5194/gmd-2020-441, 2021
Revised manuscript accepted for GMD
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WRF-GC is an online coupling of the WRF meteorological model and GEOS-Chem chemical transport model for regional atmospheric chemistry and air quality modeling. In WRF-GC v2.0, we implemented the aerosol-radiation interactions and aerosol-cloud interactions, as well as the capability to nest multiple domains for high-resolution simulations based on the modular framework of WRF-GC v1.0. This allows the GEOS-Chem users to investigate the meteorology-atmospheric chemistry interactions.
Chihiro Kodama, Tomoki Ohno, Tatsuya Seiki, Hisashi Yashiro, Akira T. Noda, Masuo Nakano, Yohei Yamada, Woosub Roh, Masaki Satoh, Tomoko Nitta, Daisuke Goto, Hiroaki Miura, Tomoe Nasuno, Tomoki Miyakawa, Ying-Wen Chen, and Masato Sugi
Geosci. Model Dev., 14, 795–820, https://doi.org/10.5194/gmd-14-795-2021, https://doi.org/10.5194/gmd-14-795-2021, 2021
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This paper describes the latest stable version of NICAM, a global atmospheric model, developed for high-resolution climate simulations toward the IPCC Assessment Report. Our model explicitly treats convection, clouds, and precipitation and could reduce the uncertainty of climate change projection. A series of test simulations demonstrated improvements (e.g., high cloud) and issues (e.g., low cloud, precipitation pattern), suggesting further necessity for model improvement and higher resolutions.
Jingyu Wang, Jiwen Fan, Robert A. Houze Jr., Stella R. Brodzik, Kai Zhang, Guang J. Zhang, and Po-Lun Ma
Geosci. Model Dev., 14, 719–734, https://doi.org/10.5194/gmd-14-719-2021, https://doi.org/10.5194/gmd-14-719-2021, 2021
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This paper presents an evaluation of the E3SM model against NEXRAD radar observations for the warm seasons during 2014–2016. The COSP forward simulator package is implemented in the model to generate radar reflectivity, and the NEXRAD observations are coarsened to the model resolution for comparison. The model severely underestimates the reflectivity above 4 km. Sensitivity tests on the parameters from cumulus parameterization and cloud microphysics do not improve this model bias.
Lei Zhang, Sunling Gong, Tianliang Zhao, Chunhong Zhou, Yuesi Wang, Jiawei Li, Dongsheng Ji, Jianjun He, Hongli Liu, Ke Gui, Xiaomei Guo, Jinhui Gao, Yunpeng Shan, Hong Wang, Yaqiang Wang, Huizheng Che, and Xiaoye Zhang
Geosci. Model Dev., 14, 703–718, https://doi.org/10.5194/gmd-14-703-2021, https://doi.org/10.5194/gmd-14-703-2021, 2021
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Development of chemical transport models with advanced physics and chemical schemes is important for improving air-quality forecasts. This study develops the chemical module CUACE by updating with a new particle dry deposition scheme and adding heterogenous chemical reactions and couples it with the WRF model. The coupled model (WRF/CUACE) was able to capture well the variations of PM2.5, O3, NO2, and secondary inorganic aerosols in eastern China.
Simon Patrick O'Meara, Shuxuan Xu, David Topping, M. Rami Alfarra, Gerard Capes, Douglas Lowe, Yunqi Shao, and Gordon McFiggans
Geosci. Model Dev., 14, 675–702, https://doi.org/10.5194/gmd-14-675-2021, https://doi.org/10.5194/gmd-14-675-2021, 2021
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User-friendly and open-source software for simulating aerosol chambers is a valuable tool for research scientists in designing and analysing their experiments. This paper describes a new version of such software and will therefore provide a useful reference for those applying it. Central to the paper is an assessment of the software's accuracy through comparison against previously published simulations.
Carlos Román-Cascón, Marie Lothon, Fabienne Lohou, Oscar Hartogensis, Jordi Vila-Guerau de Arellano, David Pino, Carlos Yagüe, and Eric R. Pardyjak
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-371, https://doi.org/10.5194/gmd-2020-371, 2021
Revised manuscript accepted for GMD
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The type of vegetation (or land cover) and its status influence the heat and water transfers between the surface and the air, affecting the processes that develop in the atmosphere at different (but connected) spatiotemporal scales. In this work, we investigate how these transfers are affected by the way the surface is represented in a widely used weather model. The results encourage including realistic high-resolution and updated land-cover databases in models to improve their predictions.
Tamara Emmerichs, Astrid Kerkweg, Huug Ouwersloot, Silvano Fares, Ivan Mammarella, and Domenico Taraborrelli
Geosci. Model Dev., 14, 495–519, https://doi.org/10.5194/gmd-14-495-2021, https://doi.org/10.5194/gmd-14-495-2021, 2021
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Dry deposition to vegetation is a major sink of ground-level ozone. Its parameterization in atmospheric chemistry models represents a significant source of uncertainty for global tropospheric ozone. We extended the current model parameterization with a relevant pathway and important meteorological adjustment factors. The comparison with measurements shows that this enables a more realistic model representation of ozone dry deposition velocity. Globally, annual dry deposition loss increases.
Ying Wei, Xueshun Chen, Huansheng Chen, Yele Sun, Wenyi Yang, Huiyun Du, Qizhong Wu, Dan Chen, Xiujuan Zhao, Jie Li, and Zifa Wang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2020-430, https://doi.org/10.5194/gmd-2020-430, 2021
Preprint under review for GMD
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The sub-grid particle formation (SGPF) in plume plays an important role in air pollution and climate effect. We coupled a SGPF scheme into a chemical transport model with aerosol microphysics module and applied it to investigate the SGPF impact over China. The scheme clearly improved the model performance in simulating aerosol components and particle number at typical sites influenced by point sources. The results indicate the significant effects of SGPF on aerosol particles in industrial areas.
Alexander Ukhov, Ravan Ahmadov, Georg Grell, and Georgiy Stenchikov
Geosci. Model Dev., 14, 473–493, https://doi.org/10.5194/gmd-14-473-2021, https://doi.org/10.5194/gmd-14-473-2021, 2021
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We discuss and evaluate the effects of inconsistencies found in the WRF-Chem code when using the GOCART module. First, PM surface concentrations were miscalculated. Second, dust optical depth was underestimated by 25 %–30 %. Third, an inconsistency in the process of gravitational settling led to the overestimation of dust column loadings by 4 %–6 %, PM10 by 2 %–4 %, and the rate of gravitational dust settling by 5 %–10 %. We also presented diagnostics that can be used to estimate these effects.
Andrew T. Prata, Leonardo Mingari, Arnau Folch, Giovanni Macedonio, and Antonio Costa
Geosci. Model Dev., 14, 409–436, https://doi.org/10.5194/gmd-14-409-2021, https://doi.org/10.5194/gmd-14-409-2021, 2021
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This paper presents FALL3D-8.0, the latest version release of an open-source code with a track record of 15+ years and a growing number of users in the volcanological and atmospheric communities. The code, originally conceived for atmospheric dispersal and deposition of tephra particles, has been extended to model other types of particles, aerosols and radionuclides. This paper details new model applications and validation of FALL3D-8.0 using satellite, ground-deposit load and radionuclide data.
Jian Zhong, Xiaoming Cai, and Zheng-Tong Xie
Geosci. Model Dev., 14, 323–336, https://doi.org/10.5194/gmd-14-323-2021, https://doi.org/10.5194/gmd-14-323-2021, 2021
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A synthetic inflow turbulence generator was implemented in the idealised Weather Research and Forecasting large eddy simulation. The inflow case yielded a mean velocity profile and second-moment profiles that agreed well with those generated using periodic boundary conditions, after a short adjustment distance. This implementation can be extended to a multi-scale seamless nesting simulation from a meso-scale domain with a kilometre-scale resolution to LES domains with metre-scale resolutions.
Cited articles
Aumont, B., Szopa, S., and Madronich, S.: Modelling the evolution of organic
carbon during its gas-phase tropospheric oxidation: development of an
explicit model based on a self generating approach, Atmos. Chem. Phys., 5,
2497–2517, https://doi.org/10.5194/acp-5-2497-2005, 2005.
Barley, M., Topping, D. O., Jenkin, M. E., and McFiggans, G.: Sensitivities
of the absorptive partitioning model of secondary organic aerosol formation
to the inclusion of water, Atmos. Chem. Phys., 9, 2919–2932,
https://doi.org/10.5194/acp-9-2919-2009, 2009.
Barley, M. H., Topping, D., Lowe, D., Utembe, S., and McFiggans, G.: The
sensitivity of secondary organic aerosol (SOA) component partitioning to the
predictions of component properties – Part 3: Investigation of condensed
compounds generated by a near-explicit model of VOC oxidation, Atmos. Chem.
Phys., 11, 13145–13159, https://doi.org/10.5194/acp-11-13145-2011, 2011.
Barley, M. H., Topping, D. O., and McFiggans, G.: Critical Assessment of
Liquid
Density Estimation Methods for Multifunctional Organic Compounds and Their
Use in Atmospheric Science, J. Phys. Chem. A, 117, 3428–3441, 2013.
Bas, G. L.: The Molecular Volume of Liquid Chemical Compounds, Longmans, New York, NY, USA,
1915.
Bilde, M., Barsanti, K., Booth, M., Cappa, C. D., Donahue, N. M.,
Emanuelsson,
E. U., McFiggans, G., Krieger, U. K., Marcolli, C., Tropping, D., Ziemann,
P., Barley, M., Clegg, S., Dennis-Smither, B., Hallquist, M., Hallquist,
A. M., Khlystov, A., Kulmala, M., Mogensen, D., Percival, C. J., Pope, F.,
Reid, J. P., da Silva, M. A. V. R., Rosenoern, T., Salo, K., Soonsin, V. P.,
Yli-Juuti, T., Prisle, N. L., Pagels, J., Rarey, J., Zardini, A. A., and
Riipinen, I.: Saturation Vapor Pressures and Transition Enthalpies of
Low-Volatility Organic Molecules of Atmospheric Relevance: From Dicarboxylic
Acids to Complex Mixtures, Chem. Rev., 115, 4115–4156, 2015.
Choi, M. Y. and Chan, C. K.: The effects of organic species on the
hygroscopic
behaviors of inorganic aerosols, Environ. Sci. Technol., 36,
2422–2428, 2002.
Compernolle, S., Ceulemans, K., and Müller, J.-F.: EVAPORATION: a new
vapour pressure estimation methodfor organic molecules including
non-additivity and intramolecular interactions, Atmos. Chem. Phys., 11,
9431–9450, https://doi.org/10.5194/acp-11-9431-2011, 2011.
Donahue, N. M., Robinson, A. L., Stanier, C. O., and Pandis, S. N.: Coupled
partitioning, dilution, and chemical aging of semivolatile organics,
Environ. Sci. Technol., 40, 2635–2643, 2006.
Donahue, N. M., Epstein, S. A., Pandis, S. N., and Robinson, A. L.: A
two-dimensional volatility basis set: 1. organic-aerosol mixing
thermodynamics, Atmos. Chem. Phys., 11, 3303–3318,
https://doi.org/10.5194/acp-11-3303-2011, 2011.
Fredenslund, A., Jones, R. L., and Prausnitz, J. M.: Group-Contribution
Estimation of Activity-Coefficients in Nonideal Liquid-Mixtures, Aiche
J., 21, 1086–1099,
1975.
Girolami, G. S.: A Simple “Back of the Envelope” Method for Estimating the
Densities and Molecular Volume of Liquids and Volumes, J. Chem.
Educ., 71, 962–964, 1994.
Hallquist, M., Wenger, J. C., Baltensperger, U., Rudich, Y., Simpson, D.,
Claeys, M., Dommen, J., Donahue, N. M., George, C., Goldstein, A. H.,
Hamilton, J. F., Herrmann, H., Hoffmann, T., Iinuma, Y., Jang, M., Jenkin, M.
E., Jimenez, J. L., Kiendler-Scharr, A., Maenhaut, W., McFiggans, G., Mentel,
Th. F., Monod, A., Prévôt, A. S. H., Seinfeld, J. H., Surratt, J. D.,
Szmigielski, R., and Wildt, J.: The formation, properties and impact of
secondary organic aerosol: current and emerging issues, Atmos. Chem. Phys.,
9, 5155–5236, https://doi.org/10.5194/acp-9-5155-2009, 2009.
Jenkin, M. E., Wyche, K. P., Evans, C. J., Carr, T., Monks, P. S., Alfarra,
M. R., Barley, M. H., McFiggans, G. B., Young, J. C., and Rickard, A. R.:
Development and chamber evaluation of the MCM v3.2 degradation scheme for
β-caryophyllene, Atmos. Chem. Phys., 12, 5275–5308,
https://doi.org/10.5194/acp-12-5275-2012, 2012.
Joback, K. G. and Reid, R. C.: Estimation of Pure-Component Properties from
Group-Contributions, Chem. Eng. Commun., 57, 233–243, 1987.
Kreidenweis, S. M., Koehler, K., DeMott, P. J., Prenni, A. J., Carrico, C.,
and Ervens, B.: Water activity and activation diameters from hygroscopicity
data – Part I: Theory and application to inorganic salts, Atmos. Chem.
Phys., 5, 1357–1370, https://doi.org/10.5194/acp-5-1357-2005, 2005.
Marcolli, C. and Peter, Th.: Water activity in polyol/water systems: new
UNIFAC parameterization, Atmos. Chem. Phys., 5, 1545–1555,
https://doi.org/10.5194/acp-5-1545-2005, 2005.
McFiggans, G., Topping, D. O., and Barley, M. H.: The sensitivity of
secondary organic aerosol component partitioning to the predictions of
component properties – Part 1: A systematic evaluation of some available
estimation techniques, Atmos. Chem. Phys., 10, 10255–10272,
https://doi.org/10.5194/acp-10-10255-2010, 2010.
Myrdal, P. B. and Yalkowsky, S. H.: Estimating pure component vapor pressures
of complex organic molecules, Ind. Eng. Chem. Res.,
36, 2494–2499, 1997.
Nannoolal, Y., Rarey, J., Ramjugernath, D., and Cordes, W.: Estimation of
pure component properties Part 1. Estimation of the normal boiling point of
non-electrolyte organic compounds via group contributions and group
interactions, Fluid Phase Equilibr., 226, 45–63, 2004.
Nannoolal, Y., Rarey, J., and Ramjugernath, D.: Estimation of pure component
properties. Part 2. Estimation of critical property data by group
contribution, Fluid Phase Equilibr., 252, 1–27, 2007.
Nannoolal, Y., Rarey, J., and Ramjugernath, D.: Estimation of pure component
properties – Part 3. Estimation of the vapor pressure of non-electrolyte
organic compounds via group contributions and group interactions, Fluid Phase
Equilibr., 269, 117–133,
2008.
O'Boyle, N. M., Morley, C., and Hutchison, G. R.: Pybel: a Python wrapper for
the OpenBabel cheminformatics toolkit, Chem. Cent. J., 2, 5, https://doi.org/10.1186/1752-153X-2-5, 2008.
O'meara, S., Booth, A. M., Barley, M. H., Topping, D., and McFiggans, G.: An
assessment of vapour pressure estimation methods, Phys. Chem. Chem.
Phys., 16, 19453–19469, 2014.
Pankow, J. F.: An Absorption-Model of the Gas Aerosol Partitioning Involved
in the Formation of Secondary Organic Aerosol, Atmos. Environ., 28, 189–193,
1994.
Poling, B. E., Prausnitz, J. M., and O'Connell, J. P.: Properties of Gases
and Liquids,
Fifth Edition, McGraw-Hill Education, New York, Chicago, San Francisco,
Athens, London, Madrid, Mexico City, Milan, New Delhi, Singapore, Sydney,
Toronto, 2001.
Ruggeri, G. and Takahama, S.: Technical Note: Development of chemoinformatic
tools to enumerate functional groups in molecules for organic aerosol
characterization, Atmos. Chem. Phys. Discuss., 15, 33631–33674,
https://doi.org/10.5194/acpd-15-33631-2015, 2015.
Stein, S. E. and Brown, R. L.: Estimation of Normal Boiling Points from Group
Contributions, Journal of Chemical Information and Computer Sciences, 34,
581–587, 1994.
Topping, D., Connolly, P., and McFiggans, G.: Cloud droplet number enhanced
by co-condensation of organic vapours, Nat. Geosci., 6, 443–446, 2013.
Topping, D. O. and McFiggans, G.: Tight coupling of particle size, number and
composition in atmospheric cloud droplet activation, Atmos. Chem. Phys., 12,
3253–3260, https://doi.org/10.5194/acp-12-3253-2012, 2012.
Topping, D. O., McFiggans, G. B., and Coe, H.: A curved multi-component
aerosol hygroscopicity model framework: Part 2 – Including organic
compounds, Atmos. Chem. Phys., 5, 1223–1242, https://doi.org/10.5194/acp-5-1223-2005,
2005.
Zuend, A., Marcolli, C., Luo, B. P., and Peter, T.: A thermodynamic model of
mixed organic-inorganic aerosols to predict activity coefficients, Atmos.
Chem. Phys., 8, 4559–4593, https://doi.org/10.5194/acp-8-4559-2008, 2008.
Short summary
In this paper we describe the development and application of a new web-based and open-source facility, UManSysProp (http://umansysprop .seaes.manchester.ac.uk), for automating predictions of molecular and atmospheric aerosol properties. Current facilities include pure component vapour pressures, critical properties, and sub-cooled densities of organic molecules; activity coefficient predictions for mixed inorganic-organic liquid systems; hygroscopic growth factors and CCN activation potential.
In this paper we describe the development and application of a new web-based and open-source...
