Articles | Volume 7, issue 3
https://doi.org/10.5194/gmd-7-821-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-7-821-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper
| 
12 May 2014
Model description paper |
| 12 May 2014
Effects of vegetation structure on biomass accumulation in a Balanced Optimality Structure Vegetation Model (BOSVM v1.0)
Z. Yin
Institute for Marine and Atmospheric research Utrecht, Utrecht University, Utrecht, the Netherlands
S. C. Dekker
Copernicus Institute of Sustainable Development, Utrecht University, Utrecht, the Netherlands
B. J. J. M. van den Hurk
Institute for Marine and Atmospheric research Utrecht, Utrecht University, Utrecht, the Netherlands
Royal Netherlands Meteorological Institute, De Bilt, the Netherlands
H. A. Dijkstra
Institute for Marine and Atmospheric research Utrecht, Utrecht University, Utrecht, the Netherlands
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Ocean Sci., 21, 261–281, https://doi.org/10.5194/os-21-261-2025, https://doi.org/10.5194/os-21-261-2025, 2025
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The Atlantic Meridional Overturning Circulation (AMOC) is a tipping element in the fully-coupled Community Earth System Model (CESM). Under varying freshwater flux forcing parameters or climate change, the AMOC may collapse from a relatively strong state to a substantially weaker state. It is important to understand the dynamics of the AMOC collapse in the CESM. We show that the stability of the AMOC in the CESM is controlled by only a few feedback processes.
Aurora Faure Ragani and Henk A. Dijkstra
EGUsphere, https://doi.org/10.5194/egusphere-2025-45, https://doi.org/10.5194/egusphere-2025-45, 2025
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The Atlantic Meridional Overturning Circulation (AMOC) is sensitive to changing surface forcing conditions. Under future greenhouse gas emission reductions, it was shown in a conceptual model that it may be possible to avoid a collapse of the AMOC. Using a detailed global ocean model, we clarify the physics of the collapse and recovery behaviour of the AMOC. The potential to avoid an AMOC collapse is tightly linked to a delicate balance of salt fluxes in the northern North Atlantic.
Amber A. Boot and Henk A. Dijkstra
Earth Syst. Dynam., 16, 115–150, https://doi.org/10.5194/esd-16-115-2025, https://doi.org/10.5194/esd-16-115-2025, 2025
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The ocean is forced at the surface by a heat flux and a freshwater flux. This noise can influence long-term ocean variability and large-scale circulation. Here we study noise characteristics in reanalysis data for these fluxes. We try to capture the noise characteristics by using several noise models and compare these to state-of-the-art climate models. A pointwise noise model performs better than the climate models and can be used as forcing in ocean-only models.
Amber A. Boot, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 15, 1567–1590, https://doi.org/10.5194/esd-15-1567-2024, https://doi.org/10.5194/esd-15-1567-2024, 2024
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We investigate the multiple equilibria window (MEW) of the Atlantic Meridional Overturning Circulation (AMOC) within a box model. We find that increasing the total carbon content of the system widens the MEW of the AMOC. The important mechanisms at play are the balance between the source and sink of carbon and the sensitivity of the AMOC to freshwater forcing over the Atlantic Ocean. Our results suggest that changes in the marine carbon cycle can influence AMOC stability in future climates.
Francesco Guardamagna, Claudia Wieners, and Henk Dijkstra
Nonlin. Processes Geophys. Discuss., https://doi.org/10.5194/npg-2024-24, https://doi.org/10.5194/npg-2024-24, 2024
Revised manuscript under review for NPG
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Artificial intelligence (AI) has recently shown promising results in ENSO (El Niño Southern Oscillation) forecasting, outperforming traditional models. Yet, AI models deliver accurate predictions without showing the underlying mechanisms. Our study examines a specific AI model, the Reservoir Computer (RC). Our results show that the RC is less sensitive to initial perturbations than the traditional Zebiak and Cane (ZC) model. This reduced sensitivity can explain the RC's superior skills.
José A. Jiménez, Gundula Winter, Antonio Bonaduce, Michael Depuydt, Giulia Galluccio, Bart van den Hurk, H. E. Markus Meier, Nadia Pinardi, Lavinia G. Pomarico, and Natalia Vazquez Riveiros
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Bart van den Hurk, Nadia Pinardi, Alexander Bisaro, Giulia Galluccio, José A. Jiménez, Kate Larkin, Angélique Melet, Lavinia Giulia Pomarico, Kristin Richter, Kanika Singh, Roderik van de Wal, and Gundula Winter
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Nat. Hazards Earth Syst. Sci. Discuss., https://doi.org/10.5194/nhess-2024-182, https://doi.org/10.5194/nhess-2024-182, 2024
Preprint under review for NHESS
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Compound events, where multiple weather or climate hazards occur together, pose significant risks to both society and the environment. These events, like simultaneous wind and rain, can have more severe impacts than single hazards. Our review of compound event research from 2012–2022 reveals a rise in studies, especially on events that occur concurrently, hot and dry events and compounding flooding. The review also highlights opportunities for research in the coming years.
Arthur Merlijn Oldeman, Michiel L. J. Baatsen, Anna S. von der Heydt, Frank M. Selten, and Henk A. Dijkstra
Earth Syst. Dynam., 15, 1037–1054, https://doi.org/10.5194/esd-15-1037-2024, https://doi.org/10.5194/esd-15-1037-2024, 2024
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We might be able to constrain uncertainty in future climate projections by investigating variations in the climate of the past. In this study, we investigate the interactions of climate variability between the tropical Pacific (El Niño) and the North Pacific in a warm past climate – the mid-Pliocene, a period roughly 3 million years ago. Using model simulations, we find that, although the variability in El Niño was reduced, the variability in the North Pacific atmosphere was not.
Sacha Sinet, Peter Ashwin, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 15, 859–873, https://doi.org/10.5194/esd-15-859-2024, https://doi.org/10.5194/esd-15-859-2024, 2024
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Some components of the Earth system may irreversibly collapse under global warming. Among them, the Atlantic Meridional Overturning Circulation (AMOC), the Greenland Ice Sheet, and West Antarctica Ice Sheet are of utmost importance for maintaining the present-day climate. In a simplified model, we show that both the rate of ice melting and the natural variability linked to freshwater fluxes over the Atlantic Ocean drastically affect how an ice sheet collapse impacts the AMOC stability.
Julia E. Weiffenbach, Henk A. Dijkstra, Anna S. von der Heydt, Ayako Abe-Ouchi, Wing-Le Chan, Deepak Chandan, Ran Feng, Alan M. Haywood, Stephen J. Hunter, Xiangyu Li, Bette L. Otto-Bliesner, W. Richard Peltier, Christian Stepanek, Ning Tan, Julia C. Tindall, and Zhongshi Zhang
Clim. Past, 20, 1067–1086, https://doi.org/10.5194/cp-20-1067-2024, https://doi.org/10.5194/cp-20-1067-2024, 2024
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Elevated atmospheric CO2 concentrations and a smaller Antarctic Ice Sheet during the mid-Pliocene (~ 3 million years ago) cause the Southern Ocean surface to become fresher and warmer, which affects the global ocean circulation. The CO2 concentration and the smaller Antarctic Ice Sheet both have a similar and approximately equal impact on the Southern Ocean. The conditions of the Southern Ocean in the mid-Pliocene could therefore be analogous to those in a future climate with smaller ice sheets.
René M. van Westen and Henk A. Dijkstra
Ocean Sci., 20, 549–567, https://doi.org/10.5194/os-20-549-2024, https://doi.org/10.5194/os-20-549-2024, 2024
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The Atlantic Meridional Overturning Circulation (AMOC) is an important component in the global climate system. Observations of the present-day AMOC indicate that it may weaken or collapse under global warming, with profound disruptive effects on future climate. However, AMOC weakening is not correctly represented because an important feedback is underestimated due to biases in the Atlantic's freshwater budget. Here we address these biases in several state-of-the-art climate model simulations.
Arthur Merlijn Oldeman, Michiel L. J. Baatsen, Anna S. von der Heydt, Aarnout J. van Delden, and Henk A. Dijkstra
Weather Clim. Dynam., 5, 395–417, https://doi.org/10.5194/wcd-5-395-2024, https://doi.org/10.5194/wcd-5-395-2024, 2024
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The mid-Pliocene, a geological period around 3 million years ago, is sometimes considered the best analogue for near-future climate. It saw similar CO2 concentrations to the present-day but also a slightly different geography. In this study, we use climate model simulations and find that the Northern Hemisphere winter responds very differently to increased CO2 or to the mid-Pliocene geography. Our results weaken the potential of the mid-Pliocene as a future climate analogue.
Michiel Baatsen, Peter Bijl, Anna von der Heydt, Appy Sluijs, and Henk Dijkstra
Clim. Past, 20, 77–90, https://doi.org/10.5194/cp-20-77-2024, https://doi.org/10.5194/cp-20-77-2024, 2024
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This work introduces the possibility and consequences of monsoons on Antarctica in the warm Eocene climate. We suggest that such a monsoonal climate can be important to understand conditions in Antarctica prior to large-scale glaciation. We can explain seemingly contradictory indications of ice and vegetation on the continent through regional variability. In addition, we provide a new mechanism through which most of Antarctica remained ice-free through a wide range of global climatic changes.
Henrique M. D. Goulart, Irene Benito Lazaro, Linda van Garderen, Karin van der Wiel, Dewi Le Bars, Elco Koks, and Bart van den Hurk
Nat. Hazards Earth Syst. Sci., 24, 29–45, https://doi.org/10.5194/nhess-24-29-2024, https://doi.org/10.5194/nhess-24-29-2024, 2024
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We explore how Hurricane Sandy (2012) could flood New York City under different scenarios, including climate change and internal variability. We find that sea level rise can quadruple coastal flood volumes, while changes in Sandy's landfall location can double flood volumes. Our results show the need for diverse scenarios that include climate change and internal variability and for integrating climate information into a modelling framework, offering insights for high-impact event assessments.
Sina Loriani, Yevgeny Aksenov, David Armstrong McKay, Govindasamy Bala, Andreas Born, Cristiano M. Chiessi, Henk Dijkstra, Jonathan F. Donges, Sybren Drijfhout, Matthew H. England, Alexey V. Fedorov, Laura Jackson, Kai Kornhuber, Gabriele Messori, Francesco Pausata, Stefanie Rynders, Jean-Baptiste Salée, Bablu Sinha, Steven Sherwood, Didier Swingedouw, and Thejna Tharammal
EGUsphere, https://doi.org/10.5194/egusphere-2023-2589, https://doi.org/10.5194/egusphere-2023-2589, 2023
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In this work, we draw on paleoreords, observations and modelling studies to review tipping points in the ocean overturning circulations, monsoon systems and global atmospheric circulations. We find indications for tipping in the ocean overturning circulations and the West African monsoon, with potentially severe impacts on the Earth system and humans. Tipping in the other considered systems is considered conceivable but currently not sufficiently supported by evidence.
Chiem van Straaten, Dim Coumou, Kirien Whan, Bart van den Hurk, and Maurice Schmeits
Weather Clim. Dynam., 4, 887–903, https://doi.org/10.5194/wcd-4-887-2023, https://doi.org/10.5194/wcd-4-887-2023, 2023
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Variability in the tropics can influence weather over Europe. This study evaluates a summertime connection between the two. It shows that strongly opposing west Pacific sea surface temperature anomalies have occurred more frequently since 1980, likely due to a combination of long-term warming in the west Pacific and the El Niño Southern Oscillation. Three to six weeks later, the distribution of hot and cold airmasses over Europe is affected.
Mohsen Soltani, Bert Hamelers, Abbas Mofidi, Christopher G. Fletcher, Arie Staal, Stefan C. Dekker, Patrick Laux, Joel Arnault, Harald Kunstmann, Ties van der Hoeven, and Maarten Lanters
Earth Syst. Dynam., 14, 931–953, https://doi.org/10.5194/esd-14-931-2023, https://doi.org/10.5194/esd-14-931-2023, 2023
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The temporal changes and spatial patterns in precipitation events do not show a homogeneous tendency across the Sinai Peninsula. Mediterranean cyclones accompanied by the Red Sea and Persian troughs are responsible for the majority of Sinai's extreme rainfall events. Cyclone tracking captures 156 cyclones (rainfall ≥10 mm d-1) either formed within or transferred to the Mediterranean basin precipitating over Sinai.
Giorgia Di Capua, Dim Coumou, Bart van den Hurk, Antje Weisheimer, Andrew G. Turner, and Reik V. Donner
Weather Clim. Dynam., 4, 701–723, https://doi.org/10.5194/wcd-4-701-2023, https://doi.org/10.5194/wcd-4-701-2023, 2023
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Heavy rainfall in tropical regions interacts with mid-latitude circulation patterns, and this interaction can explain weather patterns in the Northern Hemisphere during summer. In this analysis we detect these tropical–extratropical interaction pattern both in observational datasets and data obtained by atmospheric models and assess how well atmospheric models can reproduce the observed patterns. We find a good agreement although these relationships are weaker in model data.
Valérian Jacques-Dumas, René M. van Westen, Freddy Bouchet, and Henk A. Dijkstra
Nonlin. Processes Geophys., 30, 195–216, https://doi.org/10.5194/npg-30-195-2023, https://doi.org/10.5194/npg-30-195-2023, 2023
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Computing the probability of occurrence of rare events is relevant because of their high impact but also difficult due to the lack of data. Rare event algorithms are designed for that task, but their efficiency relies on a score function that is hard to compute. We compare four methods that compute this function from data and measure their performance to assess which one would be best suited to be applied to a climate model. We find neural networks to be most robust and flexible for this task.
Emma E. Aalbers, Erik van Meijgaard, Geert Lenderink, Hylke de Vries, and Bart J. J. M. van den Hurk
Nat. Hazards Earth Syst. Sci., 23, 1921–1946, https://doi.org/10.5194/nhess-23-1921-2023, https://doi.org/10.5194/nhess-23-1921-2023, 2023
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To examine the impact of global warming on west-central European droughts, we have constructed future analogues of recent summers. Extreme droughts like 2018 further intensify, and the local temperature rise is much larger than in most summers. Years that went hardly noticed in the present-day climate may emerge as very dry and hot in a warmer world. The changes can be directly linked to real-world events, which makes the results very tangible and hence useful for climate change communication.
Jolanda J. E. Theeuwen, Arie Staal, Obbe A. Tuinenburg, Bert V. M. Hamelers, and Stefan C. Dekker
Hydrol. Earth Syst. Sci., 27, 1457–1476, https://doi.org/10.5194/hess-27-1457-2023, https://doi.org/10.5194/hess-27-1457-2023, 2023
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Evaporation changes over land affect rainfall over land via moisture recycling. We calculated the local moisture recycling ratio globally, which describes the fraction of evaporated moisture that rains out within approx. 50 km of its source location. This recycling peaks in summer as well as over wet and elevated regions. Local moisture recycling provides insight into the local impacts of evaporation changes and can be used to study the influence of regreening on local rainfall.
Julia E. Weiffenbach, Michiel L. J. Baatsen, Henk A. Dijkstra, Anna S. von der Heydt, Ayako Abe-Ouchi, Esther C. Brady, Wing-Le Chan, Deepak Chandan, Mark A. Chandler, Camille Contoux, Ran Feng, Chuncheng Guo, Zixuan Han, Alan M. Haywood, Qiang Li, Xiangyu Li, Gerrit Lohmann, Daniel J. Lunt, Kerim H. Nisancioglu, Bette L. Otto-Bliesner, W. Richard Peltier, Gilles Ramstein, Linda E. Sohl, Christian Stepanek, Ning Tan, Julia C. Tindall, Charles J. R. Williams, Qiong Zhang, and Zhongshi Zhang
Clim. Past, 19, 61–85, https://doi.org/10.5194/cp-19-61-2023, https://doi.org/10.5194/cp-19-61-2023, 2023
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We study the behavior of the Atlantic Meridional Overturning Circulation (AMOC) in the mid-Pliocene. The mid-Pliocene was about 3 million years ago and had a similar CO2 concentration to today. We show that the stronger AMOC during this period relates to changes in geography and that this has a significant influence on ocean temperatures and heat transported northwards by the Atlantic Ocean. Understanding the behavior of the mid-Pliocene AMOC can help us to learn more about our future climate.
Amber Boot, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 13, 1041–1058, https://doi.org/10.5194/esd-13-1041-2022, https://doi.org/10.5194/esd-13-1041-2022, 2022
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Atmospheric pCO2 of the past shows large variability on different timescales. We focus on the effect of the strength of Atlantic Meridional Overturning Circulation (AMOC) on this variability and on the AMOC–pCO2 relationship. We find that climatic boundary conditions and the representation of biology in our model are most important for this relationship. Under certain conditions, we find internal oscillations, which can be relevant for atmospheric pCO2 variability during glacial cycles.
Mikael L. A. Kaandorp, Stefanie L. Ypma, Marijke Boonstra, Henk A. Dijkstra, and Erik van Sebille
Ocean Sci., 18, 269–293, https://doi.org/10.5194/os-18-269-2022, https://doi.org/10.5194/os-18-269-2022, 2022
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A large amount of marine litter, such as plastics, is located on or around beaches. Both the total amount of this litter and its transport are poorly understood. We investigate this by training a machine learning model with data of cleanup efforts on Dutch beaches between 2014 and 2019, obtained by about 14 000 volunteers. We find that Dutch beaches contain up to 30 000 kg of litter, largely depending on tides, oceanic transport, and how exposed the beaches are.
Md Feroz Islam, Paul P. Schot, Stefan C. Dekker, Jasper Griffioen, and Hans Middelkoop
Hydrol. Earth Syst. Sci., 26, 903–921, https://doi.org/10.5194/hess-26-903-2022, https://doi.org/10.5194/hess-26-903-2022, 2022
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The potential of sedimentation in the lowest parts of polders (beels) through controlled flooding with dike breach (tidal river management – TRM) to counterbalance relative sea level rise (RSLR) in 234 beels of SW Bangladesh is determined in this study, using 2D models and multiple regression. Lower beels located closer to the sea have the highest potential. Operating TRM only during the monsoon season is sufficient to raise the land surface of most beels by more than 3 times the yearly RSLR.
Peter D. Nooteboom, Peter K. Bijl, Christian Kehl, Erik van Sebille, Martin Ziegler, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 13, 357–371, https://doi.org/10.5194/esd-13-357-2022, https://doi.org/10.5194/esd-13-357-2022, 2022
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Having descended through the water column, microplankton in ocean sediments represents the ocean surface environment and is used as an archive of past and present surface oceanographic conditions. However, this microplankton is advected by turbulent ocean currents during its sinking journey. We use simulations of sinking particles to define ocean bottom provinces and detect these provinces in datasets of sedimentary microplankton, which has implications for palaeoclimate reconstructions.
Ruud T. W. L. Hurkmans, Bart van den Hurk, Maurice J. Schmeits, Fredrik Wetterhall, and Ilias G. Pechlivanidis
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2021-604, https://doi.org/10.5194/hess-2021-604, 2022
Manuscript not accepted for further review
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Seasonal forecasts can help in safely and efficiently managing a fresh water reservoir in the Netherlands. We compare hydrological forecast systems of the river Rhine, the lakes most important source and analyze forecast skill for over 1993–2016 and for specific extreme years. On average, forecast skill is high in spring due to Alpine snow and smaller in summer. Dry summers appear to be more predictable, skill increases with event extremity. In those cases, seasonal forecasts are valuable tools.
Martin Wegmann, Yvan Orsolini, Antje Weisheimer, Bart van den Hurk, and Gerrit Lohmann
Weather Clim. Dynam., 2, 1245–1261, https://doi.org/10.5194/wcd-2-1245-2021, https://doi.org/10.5194/wcd-2-1245-2021, 2021
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Northern Hemisphere winter weather is influenced by the strength of westerly winds 30 km above the surface, the so-called polar vortex. Eurasian autumn snow cover is thought to modulate the polar vortex. So far, however, the modeled influence of snow on the polar vortex did not fit the observed influence. By analyzing a model experiment for the time span of 110 years, we could show that the causality of this impact is indeed sound and snow cover can weaken the polar vortex.
Henrique M. D. Goulart, Karin van der Wiel, Christian Folberth, Juraj Balkovic, and Bart van den Hurk
Earth Syst. Dynam., 12, 1503–1527, https://doi.org/10.5194/esd-12-1503-2021, https://doi.org/10.5194/esd-12-1503-2021, 2021
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Agriculture is sensitive to weather conditions and to climate change. We identify the weather conditions linked to soybean failures and explore changes related to climate change. Additionally, we build future versions of a historical extreme season under future climate scenarios. Results show that soybean failures are likely to increase with climate change. Future events with similar physical conditions to the extreme season are not expected to increase, but events with similar impacts are.
Arthur M. Oldeman, Michiel L. J. Baatsen, Anna S. von der Heydt, Henk A. Dijkstra, Julia C. Tindall, Ayako Abe-Ouchi, Alice R. Booth, Esther C. Brady, Wing-Le Chan, Deepak Chandan, Mark A. Chandler, Camille Contoux, Ran Feng, Chuncheng Guo, Alan M. Haywood, Stephen J. Hunter, Youichi Kamae, Qiang Li, Xiangyu Li, Gerrit Lohmann, Daniel J. Lunt, Kerim H. Nisancioglu, Bette L. Otto-Bliesner, W. Richard Peltier, Gabriel M. Pontes, Gilles Ramstein, Linda E. Sohl, Christian Stepanek, Ning Tan, Qiong Zhang, Zhongshi Zhang, Ilana Wainer, and Charles J. R. Williams
Clim. Past, 17, 2427–2450, https://doi.org/10.5194/cp-17-2427-2021, https://doi.org/10.5194/cp-17-2427-2021, 2021
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In this work, we have studied the behaviour of El Niño events in the mid-Pliocene, a period of around 3 million years ago, using a collection of 17 climate models. It is an interesting period to study, as it saw similar atmospheric carbon dioxide levels to the present day. We find that the El Niño events were less strong in the mid-Pliocene simulations, when compared to pre-industrial climate. Our results could help to interpret El Niño behaviour in future climate projections.
André Jüling, Anna von der Heydt, and Henk A. Dijkstra
Ocean Sci., 17, 1251–1271, https://doi.org/10.5194/os-17-1251-2021, https://doi.org/10.5194/os-17-1251-2021, 2021
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On top of forced changes such as human-caused global warming, unforced climate variability exists. Most multidecadal variability (MV) involves the oceans, but current climate models use non-turbulent, coarse-resolution oceans. We investigate the effect of resolving important turbulent ocean features on MV. We find that ocean heat content, ocean–atmosphere heat flux, and global mean surface temperature MV is more pronounced in the higher-resolution model relative to higher-frequency variability.
Johannes Lohmann, Daniele Castellana, Peter D. Ditlevsen, and Henk A. Dijkstra
Earth Syst. Dynam., 12, 819–835, https://doi.org/10.5194/esd-12-819-2021, https://doi.org/10.5194/esd-12-819-2021, 2021
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Tipping of one climate subsystem could trigger a cascade of subsequent tipping points and even global-scale climate tipping. Sequential shifts of atmosphere, sea ice and ocean have been recorded in proxy archives of past climate change. Based on this we propose a conceptual model for abrupt climate changes of the last glacial. Here, rate-induced tipping enables tipping cascades in systems with relatively weak coupling. An early warning signal is proposed that may detect such a tipping.
Víctor M. Santos, Mercè Casas-Prat, Benjamin Poschlod, Elisa Ragno, Bart van den Hurk, Zengchao Hao, Tímea Kalmár, Lianhua Zhu, and Husain Najafi
Hydrol. Earth Syst. Sci., 25, 3595–3615, https://doi.org/10.5194/hess-25-3595-2021, https://doi.org/10.5194/hess-25-3595-2021, 2021
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We present an application of multivariate statistical models to assess compound flooding events in a managed reservoir. Data (from a previous study) were obtained from a physical-based hydrological model driven by a regional climate model large ensemble, providing a time series expanding up to 800 years in length that ensures stable statistics. The length of the data set allows for a sensitivity assessment of the proposed statistical framework to natural climate variability.
André Jüling, Xun Zhang, Daniele Castellana, Anna S. von der Heydt, and Henk A. Dijkstra
Ocean Sci., 17, 729–754, https://doi.org/10.5194/os-17-729-2021, https://doi.org/10.5194/os-17-729-2021, 2021
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We investigate how the freshwater budget of the Atlantic changes under climate change, which has implications for the stability of the Atlantic Meridional Overturning Circulation. We compare the effect of ocean model resolution in a climate model and find many similarities between the simulations, enhancing trust in the current generation of climate models. However, ocean biases are reduced in the strongly eddying simulation, and significant local freshwater budget differences exist.
Pascal Wang, Daniele Castellana, and Henk A. Dijkstra
Nonlin. Processes Geophys., 28, 135–151, https://doi.org/10.5194/npg-28-135-2021, https://doi.org/10.5194/npg-28-135-2021, 2021
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This paper proposes two improvements to the use of Trajectory-Adaptive Multilevel Sampling, a rare-event algorithm which computes noise-induced transition probabilities. The first improvement uses locally linearised dynamics in order to reduce the arbitrariness associated with defining what constitutes a transition. The second improvement uses empirical transition paths accumulated at high noise in order to formulate the score function which determines the performance of the algorithm.
Amber Boot, René M. van Westen, and Henk A. Dijkstra
Ocean Sci., 17, 335–350, https://doi.org/10.5194/os-17-335-2021, https://doi.org/10.5194/os-17-335-2021, 2021
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The Maud Rise polynya is a hole in the sea ice surrounding Antarctica that occurs during winter. It appeared in 2016 and 2017. Our study concludes that heat and salt accumulation around 1000 m depth are likely to be important for polynya formation. The heat is mixed upward to the surface where it is able to melt the sea ice and, thus, create a polynya. How often the polynya forms depends largely on the variation in the time of the heat and salt accumulation.
David Wichmann, Christian Kehl, Henk A. Dijkstra, and Erik van Sebille
Nonlin. Processes Geophys., 28, 43–59, https://doi.org/10.5194/npg-28-43-2021, https://doi.org/10.5194/npg-28-43-2021, 2021
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Fluid parcels transported in complicated flows often contain subsets of particles that stay close over finite time intervals. We propose a new method for detecting finite-time coherent sets based on the density-based clustering technique of ordering points to identify the clustering structure (OPTICS). Unlike previous methods, our method has an intrinsic notion of coherent sets at different spatial scales. OPTICS is readily implemented in the SciPy sklearn package, making it easy to use.
Carine G. van der Boog, J. Otto Koetsier, Henk A. Dijkstra, Julie D. Pietrzak, and Caroline A. Katsman
Earth Syst. Sci. Data, 13, 43–61, https://doi.org/10.5194/essd-13-43-2021, https://doi.org/10.5194/essd-13-43-2021, 2021
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Thermohaline staircases are stepped structures in the ocean that contain enhanced diapycnal salt and heat transport. In this study, we present a global dataset of thermohaline staircases derived from 487 493 observations of Argo profiling floats and Ice-Tethered Profilers using a novel detection algorithm.
Michiel Baatsen, Anna S. von der Heydt, Matthew Huber, Michael A. Kliphuis, Peter K. Bijl, Appy Sluijs, and Henk A. Dijkstra
Clim. Past, 16, 2573–2597, https://doi.org/10.5194/cp-16-2573-2020, https://doi.org/10.5194/cp-16-2573-2020, 2020
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Warm climates of the deep past have proven to be challenging to reconstruct with the same numerical models used for future predictions. We present results of CESM simulations for the middle to late Eocene (∼ 38 Ma), in which we managed to match the available indications of temperature well. With these results we can now look into regional features and the response to external changes to ultimately better understand the climate when it is in such a warm state.
René M. van Westen and Henk A. Dijkstra
Ocean Sci., 16, 1443–1457, https://doi.org/10.5194/os-16-1443-2020, https://doi.org/10.5194/os-16-1443-2020, 2020
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During the mid-1970s and quite recently in 2017, a large open-water area appeared in the Antarctic sea-ice pack, the so-called Maud Rise polynya. From several model studies, the reoccurrence time of this polynya seems arbitrary. In this study, we address the reoccurrence time of the polynya using a high-resolution climate model. We find a preferred multidecadal return time in polynya formation. The return time of the polynya is associated with a large-scale ocean mode in the Southern Ocean.
Maialen Iturbide, José M. Gutiérrez, Lincoln M. Alves, Joaquín Bedia, Ruth Cerezo-Mota, Ezequiel Cimadevilla, Antonio S. Cofiño, Alejandro Di Luca, Sergio Henrique Faria, Irina V. Gorodetskaya, Mathias Hauser, Sixto Herrera, Kevin Hennessy, Helene T. Hewitt, Richard G. Jones, Svitlana Krakovska, Rodrigo Manzanas, Daniel Martínez-Castro, Gemma T. Narisma, Intan S. Nurhati, Izidine Pinto, Sonia I. Seneviratne, Bart van den Hurk, and Carolina S. Vera
Earth Syst. Sci. Data, 12, 2959–2970, https://doi.org/10.5194/essd-12-2959-2020, https://doi.org/10.5194/essd-12-2959-2020, 2020
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We present an update of the IPCC WGI reference regions used in AR5 for the synthesis of climate change information. This revision was guided by the basic principles of climatic consistency and model representativeness (in particular for the new CMIP6 simulations). We also present a new dataset of monthly CMIP5 and CMIP6 spatially aggregated information using the new reference regions and describe a worked example of how to use this dataset to inform regional climate change studies.
David Wichmann, Christian Kehl, Henk A. Dijkstra, and Erik van Sebille
Nonlin. Processes Geophys., 27, 501–518, https://doi.org/10.5194/npg-27-501-2020, https://doi.org/10.5194/npg-27-501-2020, 2020
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The surface transport of heat, nutrients and plastic in the North Atlantic Ocean is organized into large-scale flow structures. We propose a new and simple method to detect such features in ocean drifter data sets by identifying groups of trajectories with similar dynamical behaviour using network theory. We successfully detect well-known regions such as the Subpolar and Subtropical gyres, the Western Boundary Current region and the Caribbean Sea.
Giorgia Di Capua, Jakob Runge, Reik V. Donner, Bart van den Hurk, Andrew G. Turner, Ramesh Vellore, Raghavan Krishnan, and Dim Coumou
Weather Clim. Dynam., 1, 519–539, https://doi.org/10.5194/wcd-1-519-2020, https://doi.org/10.5194/wcd-1-519-2020, 2020
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We study the interactions between the tropical convective activity and the mid-latitude circulation in the Northern Hemisphere during boreal summer. We identify two circumglobal wave patterns with phase shifts corresponding to the South Asian and the western North Pacific monsoon systems at an intra-seasonal timescale. These patterns show two-way interactions in a causal framework at a weekly timescale and assess how El Niño affects these interactions.
René M. van Westen and Henk A. Dijkstra
Ocean Sci. Discuss., https://doi.org/10.5194/os-2020-33, https://doi.org/10.5194/os-2020-33, 2020
Revised manuscript not accepted
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In 2016 and 2017, an open-water area emerged within the Antarctic sea-ice pack, the so-called Maud Rise polynya. The opening of the sea ice has been linked to intense winter storms. In this study, we investigate another important contributor to polynya formation by analysing subsurface static instabilities. These static instabilities initiate subsurface convection near Maud Rise. We conclude that apart from winter storms, subsurface convection plays an important role in polynya formation.
Ann Kristin Klose, René M. van Westen, and Henk A. Dijkstra
Ocean Sci., 16, 435–449, https://doi.org/10.5194/os-16-435-2020, https://doi.org/10.5194/os-16-435-2020, 2020
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We give an explanation of the decadal timescale path variations in the Kuroshio Current in the North Pacific based on highly detailed climate
model simulations.
Giorgia Di Capua, Marlene Kretschmer, Reik V. Donner, Bart van den Hurk, Ramesh Vellore, Raghavan Krishnan, and Dim Coumou
Earth Syst. Dynam., 11, 17–34, https://doi.org/10.5194/esd-11-17-2020, https://doi.org/10.5194/esd-11-17-2020, 2020
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Drivers from both the mid-latitudes and the tropical regions have been proposed to influence the Indian summer monsoon (ISM) subseasonal variability. To understand the relative importance of tropical and mid-latitude drivers, we apply recently developed causal discovery techniques to disentangle the causal relationships among these processes. Our results show that there is indeed a two-way interaction between the mid-latitude circulation and ISM rainfall over central India.
Carine G. van der Boog, Julie D. Pietrzak, Henk A. Dijkstra, Nils Brüggemann, René M. van Westen, Rebecca K. James, Tjeerd J. Bouma, Riccardo E. M. Riva, D. Cornelis Slobbe, Roland Klees, Marcel Zijlema, and Caroline A. Katsman
Ocean Sci., 15, 1419–1437, https://doi.org/10.5194/os-15-1419-2019, https://doi.org/10.5194/os-15-1419-2019, 2019
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We use a model of the Caribbean Sea to study how coastal upwelling along Venezuela impacts the evolution of energetic anticyclonic eddies. We show that the anticyclones grow by the advection of the cold upwelling filaments. These filaments increase the density gradient and vertical shear of the anticyclones. Furthermore, we show that stronger upwelling results in stronger eddies, while model simulations with weaker upwelling contain weaker eddies.
Henk A. Dijkstra
Nonlin. Processes Geophys., 26, 359–369, https://doi.org/10.5194/npg-26-359-2019, https://doi.org/10.5194/npg-26-359-2019, 2019
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I provide a personal view on the role of bifurcation analysis of climate models in the development of a theory of variability in the climate system. By outlining the state of the art of the methodology and by discussing what has been done and what has been learned from a hierarchy of models, I will argue that there are low-order phenomena of climate variability, such as El Niño and the Atlantic Multidecadal Oscillation.
John O'Connor, Maria J. Santos, Karin T. Rebel, and Stefan C. Dekker
Hydrol. Earth Syst. Sci., 23, 3917–3931, https://doi.org/10.5194/hess-23-3917-2019, https://doi.org/10.5194/hess-23-3917-2019, 2019
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The Amazon rainforest has undergone extensive land use change, which greatly reduces the rate of evapotranspiration. Forest with deep roots is replaced by agriculture with shallow roots. The difference in rooting depth can greatly reduce access to water, especially during the dry season. However, large areas of the Amazon have a sufficiently shallow water table that may provide access for agriculture. We used remote sensing observations to compare the impact of deep and shallow water tables.
Juan-Manuel Sayol, Henk Dijkstra, and Caroline Katsman
Ocean Sci., 15, 1033–1053, https://doi.org/10.5194/os-15-1033-2019, https://doi.org/10.5194/os-15-1033-2019, 2019
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This work uses high-resolution ocean model data to quantify the sinking of waters in the subpolar North Atlantic. The largest amount of sinking is found at the depth of maximum AMOC at 45° N below the mixed layer depth, and 90 % of the sinking occurs near the boundaries in the first 250 km off the shelf. The characteristics of the sinking (total amount, seasonal variability, and vertical structure) vary largely according to the region considered, revealing a complex picture for the sinking.
Koen G. Helwegen, Claudia E. Wieners, Jason E. Frank, and Henk A. Dijkstra
Earth Syst. Dynam., 10, 453–472, https://doi.org/10.5194/esd-10-453-2019, https://doi.org/10.5194/esd-10-453-2019, 2019
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We use the climate-economy model DICE to perform a cost–benefit analysis of sulfate geoengineering, i.e. producing a thin artificial sulfate haze in the higher atmosphere to reflect some sunlight and cool the Earth.
We find that geoengineering can increase future welfare by reducing global warming, and should be taken seriously as a policy option, but it can only complement, not replace, carbon emission reduction. The best policy is to combine CO2 emission reduction with modest geoengineering.
Rémon M. Saaltink, Maria Barciela-Rial, Thijs van Kessel, Stefan C. Dekker, Hugo J. de Boer, Claire Chassange, Jasper Griffioen, Martin J. Wassen, and Johan C. Winterwerp
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2019-194, https://doi.org/10.5194/hess-2019-194, 2019
Revised manuscript not accepted
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This paper focusses on exploring an alternative approach that uses natural processes, rather than a technological solution, to speed up drainage of soft sediment. In a controlled column experiment, we studied how Phragmites australis can act as an ecological engineer that enhances drainage. The presented results provide information needed for predictive modelling of plants as ecological engineers to speed up soil forming processes in the construction of wetlands with soft cohesive sediment.
Giorgia Di Capua, Marlene Kretschmer, Reik V. Donner, Bart van den Hurk, Ramesh Vellore, Raghavan Krishnan, and Dim Coumou
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2019-11, https://doi.org/10.5194/esd-2019-11, 2019
Manuscript not accepted for further review
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Both drivers from the mid-latitudes and from the tropical regions have been proposed to influence the Indian summer monsoon (ISM) subseasonal variability. To understand the relative importance of tropical and mid-latitude drivers, we apply recently developed causal discovery techniques to disentangle the causal relationships among these processes. Our results show that there is indeed a two-way interaction between the mid-latitude circulation and ISM rainfall over central India.
Martijn Westhoff, Axel Kleidon, Stan Schymanski, Benjamin Dewals, Femke Nijsse, Maik Renner, Henk Dijkstra, Hisashi Ozawa, Hubert Savenije, Han Dolman, Antoon Meesters, and Erwin Zehe
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2019-6, https://doi.org/10.5194/esd-2019-6, 2019
Publication in ESD not foreseen
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Even models relying on physical laws have parameters that need to be measured or estimated. Thermodynamic optimality principles potentially offer a way to reduce the number of estimated parameters by stating that a system evolves to an optimum state. These principles have been applied successfully within the Earth system, but it is often unclear what to optimize and how. In this review paper we identify commonalities between different successful applications as well as some doubtful applications.
Mark M. Dekker, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 9, 1243–1260, https://doi.org/10.5194/esd-9-1243-2018, https://doi.org/10.5194/esd-9-1243-2018, 2018
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We introduce a framework of cascading tipping, i.e. a sequence of abrupt transitions occurring because a transition in one system affects the background conditions of another system. Using bifurcation theory, various types of these events are considered and early warning indicators are suggested. An illustration of such an event is found in a conceptual model, coupling the North Atlantic Ocean with the equatorial Pacific. This demonstrates the possibility of events such as this in nature.
Matthias Aengenheyster, Qing Yi Feng, Frederick van der Ploeg, and Henk A. Dijkstra
Earth Syst. Dynam., 9, 1085–1095, https://doi.org/10.5194/esd-9-1085-2018, https://doi.org/10.5194/esd-9-1085-2018, 2018
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We determine the point of no return (PNR) for climate change, which is the latest year to take action to reduce greenhouse gases to stay, with a certain probability, within thresholds set by the Paris Agreement. For a 67 % probability and a 2 K threshold, the PNR is the year 2035 when the share of renewable energy rises by 2 % per year. We show the impact on the PNR of the speed by which emissions are cut, the risk tolerance, climate uncertainties and the potential for negative emissions.
Femke J. M. M. Nijsse and Henk A. Dijkstra
Earth Syst. Dynam., 9, 999–1012, https://doi.org/10.5194/esd-9-999-2018, https://doi.org/10.5194/esd-9-999-2018, 2018
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State-of-the-art climate models sometimes differ in their prediction of key aspects of climate change. The technique of
emergent constraintsuses observations of current climate to improve those predictions, using relationships between different climate models. Our paper first classifies the different uses of the technique, and continues with proposing a mathematical justification for their use. We also highlight when the application of emergent constraints might give biased predictions.
Peter D. Nooteboom, Qing Yi Feng, Cristóbal López, Emilio Hernández-García, and Henk A. Dijkstra
Earth Syst. Dynam., 9, 969–983, https://doi.org/10.5194/esd-9-969-2018, https://doi.org/10.5194/esd-9-969-2018, 2018
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The prediction of the El Niño phenomenon, an increased sea surface temperature in the eastern Pacific, fascinates people for a long time. El Niño is associated with natural disasters, such as droughts and floods. Current methods can make a reliable prediction of this phenomenon up to 6 months ahead. However, this article presents a method which combines network theory and machine learning which predicts El Niño up to 1 year ahead.
Iris Manola, Bart van den Hurk, Hans De Moel, and Jeroen C. J. H. Aerts
Hydrol. Earth Syst. Sci., 22, 3777–3788, https://doi.org/10.5194/hess-22-3777-2018, https://doi.org/10.5194/hess-22-3777-2018, 2018
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In a warmer climate, it is expected that precipitation intensities will increase and form a considerable risk of high-impact precipitation extremes. We investigate how observed extreme precipitation events would look like if they took place in a future warmer climate. This study applies three methods to transform a historic extreme precipitation event in the Netherlands to a similar event in a future warmer climate, thus compiling a
future weatherscenario.
Sonu Khanal, Nina Ridder, Hylke de Vries, Wilco Terink, and Bart van den Hurk
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2018-103, https://doi.org/10.5194/hess-2018-103, 2018
Revised manuscript not accepted
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This study assesses the possibility of finding near simultaneous storm surge and extreme river discharge using an extended data set derived from a storm surge model and two hydrological river-discharge models forced with conditions from a highresolution climate model in ensemble model. The study highlights that the hazard of a co-occurrence of high river discharge and coastal water levels cannot be neglected in a robust risk assessment.
Michiel Baatsen, Anna S. von der Heydt, Matthew Huber, Michael A. Kliphuis, Peter K. Bijl, Appy Sluijs, and Henk A. Dijkstra
Clim. Past Discuss., https://doi.org/10.5194/cp-2018-43, https://doi.org/10.5194/cp-2018-43, 2018
Revised manuscript not accepted
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The Eocene marks a period where the climate was in a hothouse state, without any continental-scale ice sheets. Such climates have proven difficult to reproduce in models, especially their low temperature difference between equator and poles. Here, we present high resolution CESM simulations using a new geographic reconstruction of the middle-to-late Eocene. The results provide new insights into a period for which knowledge is limited, leading up to a transition into the present icehouse state.
Brian J. Dermody, Murugesu Sivapalan, Elke Stehfest, Detlef P. van Vuuren, Martin J. Wassen, Marc F. P. Bierkens, and Stefan C. Dekker
Earth Syst. Dynam., 9, 103–118, https://doi.org/10.5194/esd-9-103-2018, https://doi.org/10.5194/esd-9-103-2018, 2018
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Ensuring sustainable food and water security is an urgent and complex challenge. As the world becomes increasingly globalised and interdependent, food and water management policies may have unintended consequences across regions, sectors and scales. Current decision-making tools do not capture these complexities and thus miss important dynamics. We present a modelling framework to capture regional and sectoral interdependence and cross-scale feedbacks within the global food system.
Konstantinos Bischiniotis, Bart van den Hurk, Brenden Jongman, Erin Coughlan de Perez, Ted Veldkamp, Hans de Moel, and Jeroen Aerts
Nat. Hazards Earth Syst. Sci., 18, 271–285, https://doi.org/10.5194/nhess-18-271-2018, https://doi.org/10.5194/nhess-18-271-2018, 2018
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Preparedness activities and flood forecasting have received increasing attention and have led towards new science-based early warning systems. Understanding the flood triggering mechanisms will result in increasing warning lead times, providing sufficient time for early action. Findings of this study indicate that the consideration of short- and long-term antecedent conditions can be used by humanitarian organizations and decision makers for improved flood risk management.
Maarten C. Braakhekke, Karin T. Rebel, Stefan C. Dekker, Benjamin Smith, Arthur H. W. Beusen, and Martin J. Wassen
Earth Syst. Dynam., 8, 1121–1139, https://doi.org/10.5194/esd-8-1121-2017, https://doi.org/10.5194/esd-8-1121-2017, 2017
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Nitrogen input in natural ecosystems usually has a positive effect on plant growth. However, too much N causes N leaching, which contributes to water pollution. Using a global model we estimated that N leaching from natural lands has increased by 73 % during the 20th century, mainly due to rising N deposition from the atmosphere caused by emissions from fossil fuels and agriculture. Climate change and increasing CO2 concentration had positive and negative effects (respectively) on N leaching.
Erin Coughlan de Perez, Elisabeth Stephens, Konstantinos Bischiniotis, Maarten van Aalst, Bart van den Hurk, Simon Mason, Hannah Nissan, and Florian Pappenberger
Hydrol. Earth Syst. Sci., 21, 4517–4524, https://doi.org/10.5194/hess-21-4517-2017, https://doi.org/10.5194/hess-21-4517-2017, 2017
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Disaster managers would like to use seasonal forecasts to anticipate flooding months in advance. However, current seasonal forecasts give information on rainfall instead of flooding. Here, we find that the number of extreme events, rather than total rainfall, is most related to flooding in different regions of Africa. We recommend several forecast adjustments and research opportunities that would improve flood information at the seasonal timescale in different regions.
Inti Pelupessy, Ben van Werkhoven, Arjen van Elteren, Jan Viebahn, Adam Candy, Simon Portegies Zwart, and Henk Dijkstra
Geosci. Model Dev., 10, 3167–3187, https://doi.org/10.5194/gmd-10-3167-2017, https://doi.org/10.5194/gmd-10-3167-2017, 2017
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Researchers from the Netherlands present OMUSE, a software package
developed from core technology originating in the astrophysical
community. Using OMUSE, oceanographic and climate researchers can
develop numerical models of the ocean and the interactions between
different parts of the ocean and the atmosphere. This provides a novel
way to investigate, for example, the local effects of climate change on
the ocean. OMUSE is freely available as open-source software.
Brenda C. van Zalinge, Qing Yi Feng, Matthias Aengenheyster, and Henk A. Dijkstra
Earth Syst. Dynam., 8, 707–717, https://doi.org/10.5194/esd-8-707-2017, https://doi.org/10.5194/esd-8-707-2017, 2017
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The increase in atmospheric greenhouse gases (GHGs) is one of the main causes for the increase in global mean surface temperature. There is no good quantitative measure to determine when it is
too lateto start reducing GHGs in order to avoid dangerous anthropogenic interference. We develop a method for determining a so-called point of no return (PNR) for several GHG emission scenarios. The innovative element in this approach is the applicability to high-dimensional climate models.
Daniel J. Lunt, Matthew Huber, Eleni Anagnostou, Michiel L. J. Baatsen, Rodrigo Caballero, Rob DeConto, Henk A. Dijkstra, Yannick Donnadieu, David Evans, Ran Feng, Gavin L. Foster, Ed Gasson, Anna S. von der Heydt, Chris J. Hollis, Gordon N. Inglis, Stephen M. Jones, Jeff Kiehl, Sandy Kirtland Turner, Robert L. Korty, Reinhardt Kozdon, Srinath Krishnan, Jean-Baptiste Ladant, Petra Langebroek, Caroline H. Lear, Allegra N. LeGrande, Kate Littler, Paul Markwick, Bette Otto-Bliesner, Paul Pearson, Christopher J. Poulsen, Ulrich Salzmann, Christine Shields, Kathryn Snell, Michael Stärz, James Super, Clay Tabor, Jessica E. Tierney, Gregory J. L. Tourte, Aradhna Tripati, Garland R. Upchurch, Bridget S. Wade, Scott L. Wing, Arne M. E. Winguth, Nicky M. Wright, James C. Zachos, and Richard E. Zeebe
Geosci. Model Dev., 10, 889–901, https://doi.org/10.5194/gmd-10-889-2017, https://doi.org/10.5194/gmd-10-889-2017, 2017
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In this paper we describe the experimental design for a set of simulations which will be carried out by a range of climate models, all investigating the climate of the Eocene, about 50 million years ago. The intercomparison of model results is called 'DeepMIP', and we anticipate that we will contribute to the next IPCC report through an analysis of these simulations and the geological data to which we will compare them.
S.-E. Brunnabend, H. A. Dijkstra, M. A. Kliphuis, H. E. Bal, F. Seinstra, B. van Werkhoven, J. Maassen, and M. van Meersbergen
Ocean Sci., 13, 47–60, https://doi.org/10.5194/os-13-47-2017, https://doi.org/10.5194/os-13-47-2017, 2017
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An important contribution to future changes in regional sea level extremes is due to the changes in intrinsic ocean variability, in particular ocean eddies. Here, we study a scenario of future dynamic sea level (DSL) extremes using a strongly eddying version of the Parallel Ocean Program. Changes in 10-year return time DSL extremes are very inhomogeneous over the globe and are related to changes in ocean currents and corresponding regional shifts in ocean eddy pathways.
Rémon Saaltink, Stefan C. Dekker, Jasper Griffioen, and Martin J. Wassen
Biogeosciences, 13, 4945–4957, https://doi.org/10.5194/bg-13-4945-2016, https://doi.org/10.5194/bg-13-4945-2016, 2016
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We identified biogeochemical plant–soil feedback processes that occur when oxidation, drying and modification by plants alter sediment conditions. Wetland construction in Markermeer (a lake in the Netherlands) is used as a case study. Natural processes will be utilized during and after construction to accelerate ecosystem development. We conducted a 6-month greenhouse experiment to identify the key biogeochemical processes in the mud when Phragmites australis is used as an eco-engineer.
Erin Coughlan de Perez, Bart van den Hurk, Maarten K. van Aalst, Irene Amuron, Deus Bamanya, Tristan Hauser, Brenden Jongma, Ana Lopez, Simon Mason, Janot Mendler de Suarez, Florian Pappenberger, Alexandra Rueth, Elisabeth Stephens, Pablo Suarez, Jurjen Wagemaker, and Ervin Zsoter
Hydrol. Earth Syst. Sci., 20, 3549–3560, https://doi.org/10.5194/hess-20-3549-2016, https://doi.org/10.5194/hess-20-3549-2016, 2016
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Many flood disaster impacts could be avoided by preventative action; however, early action is not guaranteed. This article demonstrates the design of a new system of forecast-based financing, which automatically triggers action when a flood forecast arrives, before a potential disaster. We establish "action triggers" for northern Uganda based on a global flood forecasting system, verifying these forecasts and assessing the uncertainties inherent in setting a trigger in a data-scarce location.
Bart van den Hurk, Hyungjun Kim, Gerhard Krinner, Sonia I. Seneviratne, Chris Derksen, Taikan Oki, Hervé Douville, Jeanne Colin, Agnès Ducharne, Frederique Cheruy, Nicholas Viovy, Michael J. Puma, Yoshihide Wada, Weiping Li, Binghao Jia, Andrea Alessandri, Dave M. Lawrence, Graham P. Weedon, Richard Ellis, Stefan Hagemann, Jiafu Mao, Mark G. Flanner, Matteo Zampieri, Stefano Materia, Rachel M. Law, and Justin Sheffield
Geosci. Model Dev., 9, 2809–2832, https://doi.org/10.5194/gmd-9-2809-2016, https://doi.org/10.5194/gmd-9-2809-2016, 2016
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This manuscript describes the setup of the CMIP6 project Land Surface, Snow and Soil Moisture Model Intercomparison Project (LS3MIP).
Michiel Baatsen, Douwe J. J. van Hinsbergen, Anna S. von der Heydt, Henk A. Dijkstra, Appy Sluijs, Hemmo A. Abels, and Peter K. Bijl
Clim. Past, 12, 1635–1644, https://doi.org/10.5194/cp-12-1635-2016, https://doi.org/10.5194/cp-12-1635-2016, 2016
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One of the major difficulties in modelling palaeoclimate is constricting the boundary conditions, causing significant discrepancies between different studies. Here, a new method is presented to automate much of the process of generating the necessary geographical reconstructions. The latter can be made using various rotational frameworks and topography/bathymetry input, allowing for easy inter-comparisons and the incorporation of the latest insights from geoscientific research.
Stefan C. Dekker, Margriet Groenendijk, Ben B. B. Booth, Chris Huntingford, and Peter M. Cox
Earth Syst. Dynam., 7, 525–533, https://doi.org/10.5194/esd-7-525-2016, https://doi.org/10.5194/esd-7-525-2016, 2016
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Our analysis allows us to infer maps of changing plant water-use efficiency (WUE) for 1901–2010, using atmospheric observations of temperature, humidity and CO2. Our estimated increase in global WUE is consistent with the tree-ring and eddy covariance data, but much larger than the historical WUE increases simulated by Earth System Models (ESMs). We therefore conclude that the effects of increasing CO2 on plant WUE are significantly underestimated in the latest climate projections.
Zun Yin, Stefan C. Dekker, Bart J. J. M. van den Hurk, and Henk A. Dijkstra
Biogeosciences, 13, 3343–3357, https://doi.org/10.5194/bg-13-3343-2016, https://doi.org/10.5194/bg-13-3343-2016, 2016
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Bimodality is found in aboveground biomass and mean annual shortwave radiation in West Africa, which is a strong evidence of alternative stable states. The condition with low biomass and low radiation is demonstrated under which ecosystem state can shift between savanna and forest states. Moreover, climatic indicators have different prediction confidences to different land cover types. A new method is proposed to predict potential land cover change with a combination of climatic indicators.
Patrick W. Bogaart, Ype van der Velde, Steve W. Lyon, and Stefan C. Dekker
Hydrol. Earth Syst. Sci., 20, 1413–1432, https://doi.org/10.5194/hess-20-1413-2016, https://doi.org/10.5194/hess-20-1413-2016, 2016
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We analyse how stream discharge declines after rain storms. This "recession" behaviour contains information about the capacity of the catchment to hold or release water. Looking at many rivers in Sweden, we were able to link distinct recession regimes to land use and catchment characteristics. Trends in recession behaviour are found to correspond to intensifying agriculture and extensive reforestation. We conclude that both humans and nature reorganizes the soil in order to enhance efficiency.
Qing Yi Feng, Ruggero Vasile, Marc Segond, Avi Gozolchiani, Yang Wang, Markus Abel, Shilomo Havlin, Armin Bunde, and Henk A. Dijkstra
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2015-273, https://doi.org/10.5194/gmd-2015-273, 2016
Revised manuscript not accepted
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We present the toolbox ClimateLearn to tackle problems in climate prediction using machine learning techniques and climate network analysis. Because spatial temporal information on climate variability can be efficiently represented by complex network measures, such data are considered here as input to the machine-learning algorithms. As an example, the toolbox is applied to the prediction of the occurrence and the development of El Niño in the equatorial Pacific.
H. Ihshaish, A. Tantet, J. C. M. Dijkzeul, and H. A. Dijkstra
Geosci. Model Dev., 8, 3321–3331, https://doi.org/10.5194/gmd-8-3321-2015, https://doi.org/10.5194/gmd-8-3321-2015, 2015
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Par@Graph, a software toolbox to reconstruct and analyze large-scale complex climate networks. It exposes parallelism on distributed-memory computing platforms to enable the construction of massive networks from large number of time series based on the calculation of common statistical similarity measures between them. Providing additionally parallel graph algorithms to enable fast calculation of important and common properties of the generated networks on SMP machines.
J. Mao, K. G. J. Nierop, M. Rietkerk, and S. C. Dekker
SOIL, 1, 411–425, https://doi.org/10.5194/soil-1-411-2015, https://doi.org/10.5194/soil-1-411-2015, 2015
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In this study we show how soil water repellency (SWR) is linked to the quantity and quality of SWR markers in soils mainly derived from vegetation. To predict the SWR of topsoils, we find the strongest relationship with ester-bound alcohols, and for subsoils with root-derived ω-hydroxy fatty acids and α,ω-dicarboxylic acids. From this we conclude that, overall, roots influence SWR more strongly than leaves and subsequently SWR markers derived from roots predict SWR better.
E. Coughlan de Perez, B. van den Hurk, M. K. van Aalst, B. Jongman, T. Klose, and P. Suarez
Nat. Hazards Earth Syst. Sci., 15, 895–904, https://doi.org/10.5194/nhess-15-895-2015, https://doi.org/10.5194/nhess-15-895-2015, 2015
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How can we use weather or climate forecasts to avoid disasters? This article offers a framework for determining when it is "worth" taking action to try to avoid a potential disaster. Considering forecast probabilities, actions, and funding constraints, we propose a novel forecast-based financing system that would automatically trigger action based on forecasts of increased risks.
M. Baudena, S. C. Dekker, P. M. van Bodegom, B. Cuesta, S. I. Higgins, V. Lehsten, C. H. Reick, M. Rietkerk, S. Scheiter, Z. Yin, M. A. Zavala, and V. Brovkin
Biogeosciences, 12, 1833–1848, https://doi.org/10.5194/bg-12-1833-2015, https://doi.org/10.5194/bg-12-1833-2015, 2015
L. Hahn-Woernle, H. A. Dijkstra, and H. J. Van der Woerd
Ocean Sci., 10, 993–1011, https://doi.org/10.5194/os-10-993-2014, https://doi.org/10.5194/os-10-993-2014, 2014
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Measured vertical mixing profiles are applied to a 1-D phytoplankton model. Results show that shifts in vertical mixing are able to induce a transition from an upper chlorophyll maximum to a deep one and vice versa. Furthermore, a clear correlation between the surface phytoplankton concentration and mixing-induced nutrient flux is found for nutrient-limited cases. This result suggests that characteristics of the vertical mixing could be determined from the surface phytoplankton concentration.
B. J. Dermody, R. P. H. van Beek, E. Meeks, K. Klein Goldewijk, W. Scheidel, Y. van der Velde, M. F. P. Bierkens, M. J. Wassen, and S. C. Dekker
Hydrol. Earth Syst. Sci., 18, 5025–5040, https://doi.org/10.5194/hess-18-5025-2014, https://doi.org/10.5194/hess-18-5025-2014, 2014
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Our virtual water network of the Roman World shows that virtual water trade and irrigation provided the Romans with resilience to interannual climate variability. Virtual water trade enabled the Romans to meet food demands from regions with a surplus. Irrigation provided stable water supplies for agriculture, particularly in large river catchments. However, virtual water trade also stimulated urbanization and population growth, which eroded Roman resilience to climate variability over time.
S.-E. Brunnabend, H. A. Dijkstra, M. A. Kliphuis, B. van Werkhoven, H. E. Bal, F. Seinstra, J. Maassen, and M. van Meersbergen
Ocean Sci., 10, 881–891, https://doi.org/10.5194/os-10-881-2014, https://doi.org/10.5194/os-10-881-2014, 2014
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Regional sea surface height (SSH) changes due to an abrupt weakening of the Atlantic meridional overturning circulation (AMOC) are simulated with a high- and low-resolution model. A rapid decrease of the AMOC in the high-resolution version induces shorter return times of several specific regional and coastal extremes in North Atlantic SSH than in the low-resolution version. This effect is caused by a change in main eddy pathways associated with a change in separation latitude of the Gulf Stream.
B. P. Guillod, B. Orlowsky, D. Miralles, A. J. Teuling, P. D. Blanken, N. Buchmann, P. Ciais, M. Ek, K. L. Findell, P. Gentine, B. R. Lintner, R. L. Scott, B. Van den Hurk, and S. I. Seneviratne
Atmos. Chem. Phys., 14, 8343–8367, https://doi.org/10.5194/acp-14-8343-2014, https://doi.org/10.5194/acp-14-8343-2014, 2014
S. J. Sutanto, B. van den Hurk, P. A. Dirmeyer, S. I. Seneviratne, T. Röckmann, K. E. Trenberth, E. M. Blyth, J. Wenninger, and G. Hoffmann
Hydrol. Earth Syst. Sci., 18, 2815–2827, https://doi.org/10.5194/hess-18-2815-2014, https://doi.org/10.5194/hess-18-2815-2014, 2014
Z. Yin, S. C. Dekker, B. J. J. M. van den Hurk, and H. A. Dijkstra
Earth Syst. Dynam., 5, 257–270, https://doi.org/10.5194/esd-5-257-2014, https://doi.org/10.5194/esd-5-257-2014, 2014
D. Le Bars, J. V. Durgadoo, H. A. Dijkstra, A. Biastoch, and W. P. M. De Ruijter
Ocean Sci., 10, 601–609, https://doi.org/10.5194/os-10-601-2014, https://doi.org/10.5194/os-10-601-2014, 2014
L. Batlle-Bayer, B. J. J. M. van den Hurk, C. Müller, and J. van Minnen
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esdd-5-585-2014, https://doi.org/10.5194/esdd-5-585-2014, 2014
Revised manuscript has not been submitted
G. Sgubin, S. Pierini, and H. A. Dijkstra
Ocean Sci., 10, 201–213, https://doi.org/10.5194/os-10-201-2014, https://doi.org/10.5194/os-10-201-2014, 2014
A. Tantet and H. A. Dijkstra
Earth Syst. Dynam., 5, 1–14, https://doi.org/10.5194/esd-5-1-2014, https://doi.org/10.5194/esd-5-1-2014, 2014
A. A. Cimatoribus, S. Drijfhout, and H. A. Dijkstra
Ocean Sci. Discuss., https://doi.org/10.5194/osd-10-2461-2013, https://doi.org/10.5194/osd-10-2461-2013, 2013
Preprint withdrawn
A. S. von der Heydt, A. Nnafie, and H. A. Dijkstra
Clim. Past, 7, 903–915, https://doi.org/10.5194/cp-7-903-2011, https://doi.org/10.5194/cp-7-903-2011, 2011
M. Tigchelaar, A. S. von der Heydt, and H. A. Dijkstra
Clim. Past, 7, 235–247, https://doi.org/10.5194/cp-7-235-2011, https://doi.org/10.5194/cp-7-235-2011, 2011
J. O. Sewall, R. S. W. van de Wal, K. van der Zwan, C. van Oosterhout, H. A. Dijkstra, and C. R. Scotese
Clim. Past, 3, 647–657, https://doi.org/10.5194/cp-3-647-2007, https://doi.org/10.5194/cp-3-647-2007, 2007
Related subject area
Biogeosciences
Sources of uncertainty in the SPITFIRE global fire model: development of LPJmL-SPITFIRE1.9 and directions for future improvements
The unicellular NUM v.0.91: a trait-based plankton model evaluated in two contrasting biogeographic provinces
FESOM2.1-REcoM3-MEDUSA2: an ocean–sea ice–biogeochemistry model coupled to a sediment model
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
Soil nitrous oxide emissions from global land ecosystems and their drivers within the LPJ-GUESS model (v4.1)
Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
Parameterisation toolbox for physical-biogeochemical model compatible with FABM. Case study: the coupled 1D GOTM-ECOSMO E2E for the Sylt-Romo Bight, North Sea
China Wildfire Emission (ChinaWED v1) for the period 2012–2022
H2MV (v1.0): Global Physically-Constrained Deep Learning Water Cycle Model with Vegetation
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Including the Phosphorus cycle into the LPJ-GUESS Dynamic Global Vegetation Model (v4.1, r10994) – Global patterns and temporal trends of N and P primary production limitation
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
Alquimia v1.0: A generic interface to biogeochemical codes – A tool for interoperable development, prototyping and benchmarking for multiphysics simulators
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
A comprehensive land surface vegetation model for multi-stream data assimilation, D&B v1.0
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Process-based Modeling of Solar-induced Chlorophyll Fluorescence with VISIT-SIF version 1.0
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
NN-TOC v1: global prediction of total organic carbon in marine sediments using deep neural networks
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
Geosci. Model Dev., 18, 2021–2050, https://doi.org/10.5194/gmd-18-2021-2025, https://doi.org/10.5194/gmd-18-2021-2025, 2025
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Under climate change, the conditions necessary for wildfires to form are occurring more frequently in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a basis for future improvements.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev., 18, 1895–1916, https://doi.org/10.5194/gmd-18-1895-2025, https://doi.org/10.5194/gmd-18-1895-2025, 2025
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We describe and test the size-based Nutrient-Unicellular-Multicellular model, which defines unicellular plankton using a single set of parameters, on a eutrophic and oligotrophic ecosystem. The results demonstrate that both sites can be modeled with similar parameters and robust performance over a wide range of parameters. The study shows that the model is useful for non-experts and applicable for modeling ecosystems with limited data. It holds promise for evolutionary and deep-time climate models.
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev., 18, 977–1000, https://doi.org/10.5194/gmd-18-977-2025, https://doi.org/10.5194/gmd-18-977-2025, 2025
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Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change, the carbon storage in sediments slows down carbon cycling and influences feedbacks in the atmosphere–ocean–sediment system. This paper describes the coupling of a sediment model to an ocean biogeochemistry model and presents results under the pre-industrial climate and under CO2 perturbation.
Juliette Bernard, Elodie Salmon, Marielle Saunois, Shushi Peng, Penélope Serrano-Ortiz, Antoine Berchet, Palingamoorthy Gnanamoorthy, Joachim Jansen, and Philippe Ciais
Geosci. Model Dev., 18, 863–883, https://doi.org/10.5194/gmd-18-863-2025, https://doi.org/10.5194/gmd-18-863-2025, 2025
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Despite their importance, uncertainties remain in the evaluation of the drivers of temporal variability of methane emissions from wetlands on a global scale. Here, a simplified global model is developed, taking advantage of advances in remote-sensing data and in situ observations. The model reproduces the large spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights into sensitivity analyses.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie A. Fisher, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 18, 287–317, https://doi.org/10.5194/gmd-18-287-2025, https://doi.org/10.5194/gmd-18-287-2025, 2025
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Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Jianyong Ma, Almut Arneth, Benjamin Smith, Peter Anthoni, Xu-Ri, Peter Eliasson, David Wårlind, Martin Wittenbrink, and Stefan Olin
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-223, https://doi.org/10.5194/gmd-2024-223, 2024
Revised manuscript accepted for GMD
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Nitrous oxide (N2O) is a powerful greenhouse gas mainly released from natural and agricultural soils. This study examines how global soil N2O emissions have changed from 1961 to 2020 and identifies key factors driving these changes using an ecological model. The findings highlight croplands as the largest source, with factors like fertilizer use and climate change enhancing emissions. Rising CO2 levels, however, can partially mitigate N2O emissions through increased plant nitrogen uptake.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
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The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
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In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
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The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Hoa T. T. Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
EGUsphere, https://doi.org/10.5194/egusphere-2024-2710, https://doi.org/10.5194/egusphere-2024-2710, 2024
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Parameterisation is key in modeling to reproduce observations well but is often done manually. This study presents a Particle Swarm Optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, thus providing different insights into ecosystem dynamics, (2) optimized model complexity.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-170, https://doi.org/10.5194/gmd-2024-170, 2024
Revised manuscript accepted for GMD
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Wildfires release large amounts of greenhouse gases, contributing to global warming. We developed a new model that provides near-real-time estimates of wildfire emissions in China. Our model improves the accuracy of burned area measurements and incorporates advanced data in fuel loads and emission factors. We found that most emissions come from agricultural fires, while emissions from forests and grasslands are decreasing. This model will help reduce the environmental impacts of wildfires.
Zavud Baghirov, Martin Jung, Markus Reichstein, Marco Körner, and Basil Kraft
EGUsphere, https://doi.org/10.5194/egusphere-2024-2044, https://doi.org/10.5194/egusphere-2024-2044, 2024
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We use an innovative approach to study the Earth's water cycle by blending advanced computer learning techniques with a traditional water cycle model. We developed a model that learns from meteorological data, with a special focus on understanding how vegetation influences water movement. Our model closely aligns with real-world observations, yet there are areas that need improvement. This study opens up new possibilities to better understand the water cycle and its interactions with vegetation.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
EGUsphere, https://doi.org/10.5194/egusphere-2024-2592, https://doi.org/10.5194/egusphere-2024-2592, 2024
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Our study maps global nitrogen (N) and phosphorus (P) availability and how they’ve changed from 1901 to 2018. We found that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation has increased, especially in the tropics, while N limitation has decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Sergi Molins, Benjamin Andre, Jeffrey Johnson, Glenn Hammond, Benjamin Sulman, Konstantin Lipnikov, Marcus Day, James Beisman, Daniil Svyatsky, Hang Deng, Peter Lichtner, Carl Steefel, and David Moulton
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-108, https://doi.org/10.5194/gmd-2024-108, 2024
Revised manuscript accepted for GMD
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Developing scientific software and making sure it functions properly requires a significant effort. As we advance our understanding of natural systems, however, there is the need to develop yet more complex models and codes. In this work, we present a piece of software that facilitates this work, specifically with regard to reactive processes. Existing tried-and-true codes are made available via this new interface, freeing up resources to focus on the new aspects of the problems at hand.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, Luke Smallmann, Susan Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zähle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek El-Madany, Mirco Migliavacca, Marika Honkanen, Yann Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaetan Pique, Amanda Ojasalo, Shaun Quegan, Peter Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
EGUsphere, https://doi.org/10.5194/egusphere-2024-1534, https://doi.org/10.5194/egusphere-2024-1534, 2024
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When it comes to climate change, the land surfaces are where the vast majority of impacts happen. The task of monitoring those across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us see what changes on our lands.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
EGUsphere, https://doi.org/10.5194/egusphere-2024-1542, https://doi.org/10.5194/egusphere-2024-1542, 2024
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Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical process-based model developed to represent the global SIF observed by GOSAT. Our model simulation reproduced the global distribution and seasonal variations of GOSAT SIF. The model can be utilized to improve photosynthetic process through the combination of biogeochemical modeling and GOSAT SIF.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
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We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
EGUsphere, https://doi.org/10.5194/egusphere-2024-1360, https://doi.org/10.5194/egusphere-2024-1360, 2024
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Our research uses deep learning to predict organic carbon stocks in ocean sediments, crucial for understanding their role in the global carbon cycle. By analyzing over 22,000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate the top 10 cm of ocean sediments hold about 171 petagrams of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
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This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Cited articles
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Boone, A., Rosnay, P., Balsamo, G., Beljaars, A., Chopin, F., Decharme, B., Delire, C., Ducharne, A., Gascoin, S., Grippa, M., Jarlan, L., Kergoat, L., Mougin, E., Gusev, Y., Nasonova, O., Harris, P., Taylor, C., Norgaard, A., Sandholt, I., Ottlé, C., Poccard-Leclercq, I., Saux-Picart, S., and Xue, Y.: The AMMA land surface model Intercomparison Project (ALMIP), B. Am. Meteorol. Soc., 90, 1865–1880, 2009.
Boussetta, S., Balsamo, G., Beljaars, A., Panareda, A.-A., Calvet, J.-C., Jacobs, C., Hurk, B., Viterbo, P., Lafont, S., Dutra, E., Jarlan, L., Balzarolo, M., Papale, D., and van der Werf, G.: Natural land carbon dioxide exchanges in the ECMWF Integrated Forecasting System: Implementation and offline validation, J. Geophys. Res.-Atmos., 118, 5923–5946, https://doi.org/10.1002/jgrd.50488, 2013.
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Calvet, J., Rivalland, V., Picon-Cochard, C., and Guehl, J.: Modelling forest transpiration and CO2 fluxes-response to soil moisture stress, Agr. Forest Meteorol., 124, 143–156, 2004.
Cox, P.: Description of the "TRIFFID" dynamic global vegetation model, Hadley Centre Technical Note, 24, 1–16, 2001.
Dardel, C., Kergoat, L., Hiernaux, P., Mougin, E., Grippa, M. and Tucker, C. J.: Re-greening Sahel: 30 years of remote sensing data and field observations (Mali, Niger), Remote Sens. Environ., 140, 350–364, 2014.
Dekker, S. C., Bouten, W., and Verstraten, J. M.: Modelling forest transpiration from different perspectives, Hydrol. Process., 14, 251–260, 2000.
Dekker, S., Rietkerk, M., and Bierkens, M.: Coupling microscale vegetation–soil water and macroscale vegetation–precipitation feedbacks in semiarid ecosystems, Global Change Biol., 13, 671–678, 2007.
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Dewar, R.: Information theory explanation of the fluctuation theorem, maximum entropy production and self-organized criticality in non-equilibrium stationary states, J. Phys. A Math. Gen. 36, 63–641, 2003.
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ECMWF: IFS DOCUMENTATION CY33R1. Part IV: Physical processes, Tech. rep., ECMWF, 2008.
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Guan, K., Wood, E., and Caylor, K.: Multi-sensor derivation of regional vegetation fractional cover in Africa, Remote Sens. Environ., 124, 653–665, 2012.
Hansen, M. C., DeFries, R. S., Townshend. J. R. G., Carroll, M., Dimiceli, C. and Sohlberg, R. A.: Global percent tree cover at a spatial resolution of 500 meters: First results of the MODIS vegetation continuous fields algorithm, Earth Interactions, 7, 1–15, 2003.
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Holmgren, M. and Scheffer, M.: El Niño as a window of opportunity for the restoration of degraded arid ecosystems, Ecosystems, 4, 151–159, 2001.
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Kéfi, S., Rietkerk, M., Alados, C., Pueyo, Y., Papanastasis, V., ElAich, A., and De Ruiter, P.: Spatial vegetation patterns and imminent desertification in Mediterranean arid ecosystems, Nature, 449, 213–217, 2007.
Klausmeier, C.: Regular and irregular patterns in semiarid vegetation, Science, 284, 1826–1828, 1999.
Kleidon, A.: Optimized stomatal conductance of vegetated land surfaces and its effects on simulated productivity and climate, Geophys. Res. Lett, 31, L21203, https://doi.org/10.1029/2004GL020769, 2004.
Kleidon, A.: The climate sensitivity to human appropriation of vegetation productivity and its thermodynamic characterization, Glob. Planet Change, 54, 109–127, 2006.
Kleidon, A. and Schymanski, S.:Thermodynamics and optimality of the water budget on land: a review, Geophys. Res. Lett, 35, L20404, https://doi.org/10.1029/2008GL035393, 2008.
Konings, A. G., Dekker, S., Rietkerk, M., and Katul, G. G.: Drought sensitivity of patterned vegetation determined by rainfall-land surface feedbacks, J. Geophys. Res.-Biogeosci., 116, G04008, https://doi.org/10.1029/2011JG001748, 2011.
Koster, R., Dirmeyer, P., Guo, Z., Bonan, G., Chan, E., Cox, P., Gordon, C., Kanae, S., Kowalczyk, E., Lawrence, D., Liu, P., Lu, C.-H., Malyshev, S., McAvaney, B., Mitchell, K., Mocko, D., Oki, T., Oleson, K., Pitman, A., Sud, Y. C., and Taylor, C. M., Verseghy, D., Vasic, R., Xue, Y., and Yamada, T.: Regions of strong coupling between soil moisture and precipitation, Science, 305, 1138–1140, 2004.
Malhi, Y., Doughty, C., and Galbraith, D.: The allocation of ecosystem net primary productivity in tropical forests, Philos. Trans. Roy. Soc. B, 366, 3225–3245, 2011.
Oleson, K., Dai, Y., Bonan, G., Bosilovich, M., Dickinson, R., Dirmeyer, P., Hoffman, F., Houser, P., Levis, S., Niu, G.-Y., Thornton, P., Vertenstein, M., Yang, Z.-L., and Zeng, X.: Technical description of the community land model (CLM), Tech. rep., NCAR Technical Note NCAR/TN-461+ STR, National Center for Atmospheric Research, Boulder, CO, 2004.
Rietkerk, M., Boerlijst, M., van Langevelde, F., HilleRisLambers, R., van de Koppel, J., Kumar, L., Prins, H., and de Roos, A.: Self-organization of vegetation in arid ecosystems, The American Naturalist, 160, 524–530, 2002.
Rietkerk, M., Brovkin, V., van Bodegom, P., Claussen, M., Dekker, S., Dijkstra, H., Goryachkin, S., Kabat, P., van Nes, E., Neutel, A., Nicholson, S. E., Nobre, C., Petoukhov, V., Provenzale, A., Scheffer, M., and Seneviratne, S. I.: Local ecosystem feedbacks and critical transitions in the climate, Ecol. Complex., 8, 223–228, 2011.
Rodriguez-Iturbe, I., D'odorico, P., Porporato, A., and Ridolfi, L.: On the spatial and temporal links between vegetation, climate, and soil moisture, Water Resour. Res., 35, 3709–3722, 1999.
Sankaran, M., Hanan, N., Scholes, R., Ratnam, J., Augustine, D., Cade, B., Gignoux, J., Higgins, S., Le Roux, X., Ludwig, F., Ardo, J., Banyikwa, F., Bronn, A., Bucini, G., Caylor, K. K., Coughenour, M. B., Diouf, A., Ekaya, W., Feral, C. J., February, E. C., Frost, P. G. H., Hiernaux, P., Hrabar, H., Metzger, K. L., Prins, H. H. T., Ringrose, S., Sea, W., Tews, J., Worden, J., and Zambatis, N.: Determinants of woody cover in African savannas, Nature, 438, 846–849, 2005.
Schymanski, S., Roderick, M., Sivapalan, M., Hutley, L., and Beringer, J.: A test of the optimality approach to modelling canopy properties and CO2 uptake by natural vegetation, Plant. Cell Environ., 30, 1586–1598, 2007.
Schymanski, S., Roderick, M., Sivapalan, M., Hutley, L., and Beringer, J.: A canopy-scale test of the optimal water-use hypothesis, Plant. Cell Environ., 31, 97–111, 2008.
Schymanski, S. J., Kleidon, A., Stieglitz, M., and Narula, J.: Maximum entropy production allows a simple representation of heterogeneity in semiarid ecosystems, Philos. Trans. Roy. Soc. B, 365, 1449–1455, 2010.
Seneviratne, S., Corti, T., Davin, E., Hirschi, M., Jaeger, E., Lehner, I., Orlowsky, B., and Teuling, A.: Investigating soil moisture–climate interactions in a changing climate: A review, Earth-Sci. Rev., 99, 125–161, 2010.
Sitch, S., Smith, B., Prentice, I., Arneth, A., Bondeau, A., Cramer, W., Kaplan, J., Levis, S., Lucht, W., Sykes, M., Thonicke, K., and Venevsky, S.: Evaluation of ecosystem dynamics, plant geography and terrestrial carbon cycling in the LPJ dynamic global vegetation model, Global Change Biol., 9, 161–185, 2003.
Staver, A. C., Archibald, S., and Levin, S. A.: The global extent and determinants of savanna and forest as alternative biome states, Science, 334, 230–232, 2011.
Teuling, A., Seneviratne, S., Stöckli, R., Reichstein, M., Moors, E., Ciais, P., Luyssaert, S., Van Den Hurk, B., Ammann, C., Bernhofer, C., Dellwik, E., Gianelle, D., Gielen, B., Grünwald, T., Klumpp, K., Montagnani, L., Moureaux, C., Sottocornola, M., and Wohlfahrt, G.: Contrasting response of European forest and grassland energy exchange to heatwaves, Nat. Geosci., 3, 722–727, 2010.
van den Hurk, B., Viterbo, P., Beljaars, A., and Betts, A.: Offline validation of the ERA40 surface scheme, European Centre for Medium-Range Weather Forecasts, 2000.
Zeng, N., Neelin, J. D., Lau, K. M., and Tucker, C. J.: Enhancement of interdecadal climate variability in the Sahel by vegetation interaction, Science, 286, 1537–1540, 1999.
