Articles | Volume 7, issue 3
https://doi.org/10.5194/gmd-7-821-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-7-821-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper
| 
12 May 2014
Model description paper |
| 12 May 2014
Effects of vegetation structure on biomass accumulation in a Balanced Optimality Structure Vegetation Model (BOSVM v1.0)
Z. Yin
Institute for Marine and Atmospheric research Utrecht, Utrecht University, Utrecht, the Netherlands
S. C. Dekker
Copernicus Institute of Sustainable Development, Utrecht University, Utrecht, the Netherlands
B. J. J. M. van den Hurk
Institute for Marine and Atmospheric research Utrecht, Utrecht University, Utrecht, the Netherlands
Royal Netherlands Meteorological Institute, De Bilt, the Netherlands
H. A. Dijkstra
Institute for Marine and Atmospheric research Utrecht, Utrecht University, Utrecht, the Netherlands
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Peter D. Nooteboom, Peter K. Bijl, Christian Kehl, Erik van Sebille, Martin Ziegler, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 13, 357–371, https://doi.org/10.5194/esd-13-357-2022, https://doi.org/10.5194/esd-13-357-2022, 2022
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Having descended through the water column, microplankton in ocean sediments represents the ocean surface environment and is used as an archive of past and present surface oceanographic conditions. However, this microplankton is advected by turbulent ocean currents during its sinking journey. We use simulations of sinking particles to define ocean bottom provinces and detect these provinces in datasets of sedimentary microplankton, which has implications for palaeoclimate reconstructions.
Ruud T. W. L. Hurkmans, Bart van den Hurk, Maurice J. Schmeits, Fredrik Wetterhall, and Ilias G. Pechlivanidis
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2021-604, https://doi.org/10.5194/hess-2021-604, 2022
Manuscript not accepted for further review
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Martin Wegmann, Yvan Orsolini, Antje Weisheimer, Bart van den Hurk, and Gerrit Lohmann
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Henrique M. D. Goulart, Karin van der Wiel, Christian Folberth, Juraj Balkovic, and Bart van den Hurk
Earth Syst. Dynam., 12, 1503–1527, https://doi.org/10.5194/esd-12-1503-2021, https://doi.org/10.5194/esd-12-1503-2021, 2021
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Arthur M. Oldeman, Michiel L. J. Baatsen, Anna S. von der Heydt, Henk A. Dijkstra, Julia C. Tindall, Ayako Abe-Ouchi, Alice R. Booth, Esther C. Brady, Wing-Le Chan, Deepak Chandan, Mark A. Chandler, Camille Contoux, Ran Feng, Chuncheng Guo, Alan M. Haywood, Stephen J. Hunter, Youichi Kamae, Qiang Li, Xiangyu Li, Gerrit Lohmann, Daniel J. Lunt, Kerim H. Nisancioglu, Bette L. Otto-Bliesner, W. Richard Peltier, Gabriel M. Pontes, Gilles Ramstein, Linda E. Sohl, Christian Stepanek, Ning Tan, Qiong Zhang, Zhongshi Zhang, Ilana Wainer, and Charles J. R. Williams
Clim. Past, 17, 2427–2450, https://doi.org/10.5194/cp-17-2427-2021, https://doi.org/10.5194/cp-17-2427-2021, 2021
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André Jüling, Anna von der Heydt, and Henk A. Dijkstra
Ocean Sci., 17, 1251–1271, https://doi.org/10.5194/os-17-1251-2021, https://doi.org/10.5194/os-17-1251-2021, 2021
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Johannes Lohmann, Daniele Castellana, Peter D. Ditlevsen, and Henk A. Dijkstra
Earth Syst. Dynam., 12, 819–835, https://doi.org/10.5194/esd-12-819-2021, https://doi.org/10.5194/esd-12-819-2021, 2021
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Víctor M. Santos, Mercè Casas-Prat, Benjamin Poschlod, Elisa Ragno, Bart van den Hurk, Zengchao Hao, Tímea Kalmár, Lianhua Zhu, and Husain Najafi
Hydrol. Earth Syst. Sci., 25, 3595–3615, https://doi.org/10.5194/hess-25-3595-2021, https://doi.org/10.5194/hess-25-3595-2021, 2021
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We present an application of multivariate statistical models to assess compound flooding events in a managed reservoir. Data (from a previous study) were obtained from a physical-based hydrological model driven by a regional climate model large ensemble, providing a time series expanding up to 800 years in length that ensures stable statistics. The length of the data set allows for a sensitivity assessment of the proposed statistical framework to natural climate variability.
André Jüling, Xun Zhang, Daniele Castellana, Anna S. von der Heydt, and Henk A. Dijkstra
Ocean Sci., 17, 729–754, https://doi.org/10.5194/os-17-729-2021, https://doi.org/10.5194/os-17-729-2021, 2021
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We investigate how the freshwater budget of the Atlantic changes under climate change, which has implications for the stability of the Atlantic Meridional Overturning Circulation. We compare the effect of ocean model resolution in a climate model and find many similarities between the simulations, enhancing trust in the current generation of climate models. However, ocean biases are reduced in the strongly eddying simulation, and significant local freshwater budget differences exist.
Pascal Wang, Daniele Castellana, and Henk A. Dijkstra
Nonlin. Processes Geophys., 28, 135–151, https://doi.org/10.5194/npg-28-135-2021, https://doi.org/10.5194/npg-28-135-2021, 2021
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This paper proposes two improvements to the use of Trajectory-Adaptive Multilevel Sampling, a rare-event algorithm which computes noise-induced transition probabilities. The first improvement uses locally linearised dynamics in order to reduce the arbitrariness associated with defining what constitutes a transition. The second improvement uses empirical transition paths accumulated at high noise in order to formulate the score function which determines the performance of the algorithm.
Amber Boot, René M. van Westen, and Henk A. Dijkstra
Ocean Sci., 17, 335–350, https://doi.org/10.5194/os-17-335-2021, https://doi.org/10.5194/os-17-335-2021, 2021
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The Maud Rise polynya is a hole in the sea ice surrounding Antarctica that occurs during winter. It appeared in 2016 and 2017. Our study concludes that heat and salt accumulation around 1000 m depth are likely to be important for polynya formation. The heat is mixed upward to the surface where it is able to melt the sea ice and, thus, create a polynya. How often the polynya forms depends largely on the variation in the time of the heat and salt accumulation.
David Wichmann, Christian Kehl, Henk A. Dijkstra, and Erik van Sebille
Nonlin. Processes Geophys., 28, 43–59, https://doi.org/10.5194/npg-28-43-2021, https://doi.org/10.5194/npg-28-43-2021, 2021
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Fluid parcels transported in complicated flows often contain subsets of particles that stay close over finite time intervals. We propose a new method for detecting finite-time coherent sets based on the density-based clustering technique of ordering points to identify the clustering structure (OPTICS). Unlike previous methods, our method has an intrinsic notion of coherent sets at different spatial scales. OPTICS is readily implemented in the SciPy sklearn package, making it easy to use.
Carine G. van der Boog, J. Otto Koetsier, Henk A. Dijkstra, Julie D. Pietrzak, and Caroline A. Katsman
Earth Syst. Sci. Data, 13, 43–61, https://doi.org/10.5194/essd-13-43-2021, https://doi.org/10.5194/essd-13-43-2021, 2021
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Thermohaline staircases are stepped structures in the ocean that contain enhanced diapycnal salt and heat transport. In this study, we present a global dataset of thermohaline staircases derived from 487 493 observations of Argo profiling floats and Ice-Tethered Profilers using a novel detection algorithm.
Michiel Baatsen, Anna S. von der Heydt, Matthew Huber, Michael A. Kliphuis, Peter K. Bijl, Appy Sluijs, and Henk A. Dijkstra
Clim. Past, 16, 2573–2597, https://doi.org/10.5194/cp-16-2573-2020, https://doi.org/10.5194/cp-16-2573-2020, 2020
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Warm climates of the deep past have proven to be challenging to reconstruct with the same numerical models used for future predictions. We present results of CESM simulations for the middle to late Eocene (∼ 38 Ma), in which we managed to match the available indications of temperature well. With these results we can now look into regional features and the response to external changes to ultimately better understand the climate when it is in such a warm state.
René M. van Westen and Henk A. Dijkstra
Ocean Sci., 16, 1443–1457, https://doi.org/10.5194/os-16-1443-2020, https://doi.org/10.5194/os-16-1443-2020, 2020
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During the mid-1970s and quite recently in 2017, a large open-water area appeared in the Antarctic sea-ice pack, the so-called Maud Rise polynya. From several model studies, the reoccurrence time of this polynya seems arbitrary. In this study, we address the reoccurrence time of the polynya using a high-resolution climate model. We find a preferred multidecadal return time in polynya formation. The return time of the polynya is associated with a large-scale ocean mode in the Southern Ocean.
Maialen Iturbide, José M. Gutiérrez, Lincoln M. Alves, Joaquín Bedia, Ruth Cerezo-Mota, Ezequiel Cimadevilla, Antonio S. Cofiño, Alejandro Di Luca, Sergio Henrique Faria, Irina V. Gorodetskaya, Mathias Hauser, Sixto Herrera, Kevin Hennessy, Helene T. Hewitt, Richard G. Jones, Svitlana Krakovska, Rodrigo Manzanas, Daniel Martínez-Castro, Gemma T. Narisma, Intan S. Nurhati, Izidine Pinto, Sonia I. Seneviratne, Bart van den Hurk, and Carolina S. Vera
Earth Syst. Sci. Data, 12, 2959–2970, https://doi.org/10.5194/essd-12-2959-2020, https://doi.org/10.5194/essd-12-2959-2020, 2020
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We present an update of the IPCC WGI reference regions used in AR5 for the synthesis of climate change information. This revision was guided by the basic principles of climatic consistency and model representativeness (in particular for the new CMIP6 simulations). We also present a new dataset of monthly CMIP5 and CMIP6 spatially aggregated information using the new reference regions and describe a worked example of how to use this dataset to inform regional climate change studies.
David Wichmann, Christian Kehl, Henk A. Dijkstra, and Erik van Sebille
Nonlin. Processes Geophys., 27, 501–518, https://doi.org/10.5194/npg-27-501-2020, https://doi.org/10.5194/npg-27-501-2020, 2020
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The surface transport of heat, nutrients and plastic in the North Atlantic Ocean is organized into large-scale flow structures. We propose a new and simple method to detect such features in ocean drifter data sets by identifying groups of trajectories with similar dynamical behaviour using network theory. We successfully detect well-known regions such as the Subpolar and Subtropical gyres, the Western Boundary Current region and the Caribbean Sea.
Giorgia Di Capua, Jakob Runge, Reik V. Donner, Bart van den Hurk, Andrew G. Turner, Ramesh Vellore, Raghavan Krishnan, and Dim Coumou
Weather Clim. Dynam., 1, 519–539, https://doi.org/10.5194/wcd-1-519-2020, https://doi.org/10.5194/wcd-1-519-2020, 2020
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We study the interactions between the tropical convective activity and the mid-latitude circulation in the Northern Hemisphere during boreal summer. We identify two circumglobal wave patterns with phase shifts corresponding to the South Asian and the western North Pacific monsoon systems at an intra-seasonal timescale. These patterns show two-way interactions in a causal framework at a weekly timescale and assess how El Niño affects these interactions.
René M. van Westen and Henk A. Dijkstra
Ocean Sci. Discuss., https://doi.org/10.5194/os-2020-33, https://doi.org/10.5194/os-2020-33, 2020
Revised manuscript not accepted
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In 2016 and 2017, an open-water area emerged within the Antarctic sea-ice pack, the so-called Maud Rise polynya. The opening of the sea ice has been linked to intense winter storms. In this study, we investigate another important contributor to polynya formation by analysing subsurface static instabilities. These static instabilities initiate subsurface convection near Maud Rise. We conclude that apart from winter storms, subsurface convection plays an important role in polynya formation.
Ann Kristin Klose, René M. van Westen, and Henk A. Dijkstra
Ocean Sci., 16, 435–449, https://doi.org/10.5194/os-16-435-2020, https://doi.org/10.5194/os-16-435-2020, 2020
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We give an explanation of the decadal timescale path variations in the Kuroshio Current in the North Pacific based on highly detailed climate
model simulations.
Giorgia Di Capua, Marlene Kretschmer, Reik V. Donner, Bart van den Hurk, Ramesh Vellore, Raghavan Krishnan, and Dim Coumou
Earth Syst. Dynam., 11, 17–34, https://doi.org/10.5194/esd-11-17-2020, https://doi.org/10.5194/esd-11-17-2020, 2020
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Drivers from both the mid-latitudes and the tropical regions have been proposed to influence the Indian summer monsoon (ISM) subseasonal variability. To understand the relative importance of tropical and mid-latitude drivers, we apply recently developed causal discovery techniques to disentangle the causal relationships among these processes. Our results show that there is indeed a two-way interaction between the mid-latitude circulation and ISM rainfall over central India.
Carine G. van der Boog, Julie D. Pietrzak, Henk A. Dijkstra, Nils Brüggemann, René M. van Westen, Rebecca K. James, Tjeerd J. Bouma, Riccardo E. M. Riva, D. Cornelis Slobbe, Roland Klees, Marcel Zijlema, and Caroline A. Katsman
Ocean Sci., 15, 1419–1437, https://doi.org/10.5194/os-15-1419-2019, https://doi.org/10.5194/os-15-1419-2019, 2019
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We use a model of the Caribbean Sea to study how coastal upwelling along Venezuela impacts the evolution of energetic anticyclonic eddies. We show that the anticyclones grow by the advection of the cold upwelling filaments. These filaments increase the density gradient and vertical shear of the anticyclones. Furthermore, we show that stronger upwelling results in stronger eddies, while model simulations with weaker upwelling contain weaker eddies.
Henk A. Dijkstra
Nonlin. Processes Geophys., 26, 359–369, https://doi.org/10.5194/npg-26-359-2019, https://doi.org/10.5194/npg-26-359-2019, 2019
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I provide a personal view on the role of bifurcation analysis of climate models in the development of a theory of variability in the climate system. By outlining the state of the art of the methodology and by discussing what has been done and what has been learned from a hierarchy of models, I will argue that there are low-order phenomena of climate variability, such as El Niño and the Atlantic Multidecadal Oscillation.
John O'Connor, Maria J. Santos, Karin T. Rebel, and Stefan C. Dekker
Hydrol. Earth Syst. Sci., 23, 3917–3931, https://doi.org/10.5194/hess-23-3917-2019, https://doi.org/10.5194/hess-23-3917-2019, 2019
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The Amazon rainforest has undergone extensive land use change, which greatly reduces the rate of evapotranspiration. Forest with deep roots is replaced by agriculture with shallow roots. The difference in rooting depth can greatly reduce access to water, especially during the dry season. However, large areas of the Amazon have a sufficiently shallow water table that may provide access for agriculture. We used remote sensing observations to compare the impact of deep and shallow water tables.
Juan-Manuel Sayol, Henk Dijkstra, and Caroline Katsman
Ocean Sci., 15, 1033–1053, https://doi.org/10.5194/os-15-1033-2019, https://doi.org/10.5194/os-15-1033-2019, 2019
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This work uses high-resolution ocean model data to quantify the sinking of waters in the subpolar North Atlantic. The largest amount of sinking is found at the depth of maximum AMOC at 45° N below the mixed layer depth, and 90 % of the sinking occurs near the boundaries in the first 250 km off the shelf. The characteristics of the sinking (total amount, seasonal variability, and vertical structure) vary largely according to the region considered, revealing a complex picture for the sinking.
Koen G. Helwegen, Claudia E. Wieners, Jason E. Frank, and Henk A. Dijkstra
Earth Syst. Dynam., 10, 453–472, https://doi.org/10.5194/esd-10-453-2019, https://doi.org/10.5194/esd-10-453-2019, 2019
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We use the climate-economy model DICE to perform a cost–benefit analysis of sulfate geoengineering, i.e. producing a thin artificial sulfate haze in the higher atmosphere to reflect some sunlight and cool the Earth.
We find that geoengineering can increase future welfare by reducing global warming, and should be taken seriously as a policy option, but it can only complement, not replace, carbon emission reduction. The best policy is to combine CO2 emission reduction with modest geoengineering.
Rémon M. Saaltink, Maria Barciela-Rial, Thijs van Kessel, Stefan C. Dekker, Hugo J. de Boer, Claire Chassange, Jasper Griffioen, Martin J. Wassen, and Johan C. Winterwerp
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2019-194, https://doi.org/10.5194/hess-2019-194, 2019
Revised manuscript not accepted
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This paper focusses on exploring an alternative approach that uses natural processes, rather than a technological solution, to speed up drainage of soft sediment. In a controlled column experiment, we studied how Phragmites australis can act as an ecological engineer that enhances drainage. The presented results provide information needed for predictive modelling of plants as ecological engineers to speed up soil forming processes in the construction of wetlands with soft cohesive sediment.
Giorgia Di Capua, Marlene Kretschmer, Reik V. Donner, Bart van den Hurk, Ramesh Vellore, Raghavan Krishnan, and Dim Coumou
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2019-11, https://doi.org/10.5194/esd-2019-11, 2019
Manuscript not accepted for further review
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Both drivers from the mid-latitudes and from the tropical regions have been proposed to influence the Indian summer monsoon (ISM) subseasonal variability. To understand the relative importance of tropical and mid-latitude drivers, we apply recently developed causal discovery techniques to disentangle the causal relationships among these processes. Our results show that there is indeed a two-way interaction between the mid-latitude circulation and ISM rainfall over central India.
Martijn Westhoff, Axel Kleidon, Stan Schymanski, Benjamin Dewals, Femke Nijsse, Maik Renner, Henk Dijkstra, Hisashi Ozawa, Hubert Savenije, Han Dolman, Antoon Meesters, and Erwin Zehe
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2019-6, https://doi.org/10.5194/esd-2019-6, 2019
Publication in ESD not foreseen
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Even models relying on physical laws have parameters that need to be measured or estimated. Thermodynamic optimality principles potentially offer a way to reduce the number of estimated parameters by stating that a system evolves to an optimum state. These principles have been applied successfully within the Earth system, but it is often unclear what to optimize and how. In this review paper we identify commonalities between different successful applications as well as some doubtful applications.
Mark M. Dekker, Anna S. von der Heydt, and Henk A. Dijkstra
Earth Syst. Dynam., 9, 1243–1260, https://doi.org/10.5194/esd-9-1243-2018, https://doi.org/10.5194/esd-9-1243-2018, 2018
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We introduce a framework of cascading tipping, i.e. a sequence of abrupt transitions occurring because a transition in one system affects the background conditions of another system. Using bifurcation theory, various types of these events are considered and early warning indicators are suggested. An illustration of such an event is found in a conceptual model, coupling the North Atlantic Ocean with the equatorial Pacific. This demonstrates the possibility of events such as this in nature.
Matthias Aengenheyster, Qing Yi Feng, Frederick van der Ploeg, and Henk A. Dijkstra
Earth Syst. Dynam., 9, 1085–1095, https://doi.org/10.5194/esd-9-1085-2018, https://doi.org/10.5194/esd-9-1085-2018, 2018
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We determine the point of no return (PNR) for climate change, which is the latest year to take action to reduce greenhouse gases to stay, with a certain probability, within thresholds set by the Paris Agreement. For a 67 % probability and a 2 K threshold, the PNR is the year 2035 when the share of renewable energy rises by 2 % per year. We show the impact on the PNR of the speed by which emissions are cut, the risk tolerance, climate uncertainties and the potential for negative emissions.
Femke J. M. M. Nijsse and Henk A. Dijkstra
Earth Syst. Dynam., 9, 999–1012, https://doi.org/10.5194/esd-9-999-2018, https://doi.org/10.5194/esd-9-999-2018, 2018
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State-of-the-art climate models sometimes differ in their prediction of key aspects of climate change. The technique of
emergent constraintsuses observations of current climate to improve those predictions, using relationships between different climate models. Our paper first classifies the different uses of the technique, and continues with proposing a mathematical justification for their use. We also highlight when the application of emergent constraints might give biased predictions.
Peter D. Nooteboom, Qing Yi Feng, Cristóbal López, Emilio Hernández-García, and Henk A. Dijkstra
Earth Syst. Dynam., 9, 969–983, https://doi.org/10.5194/esd-9-969-2018, https://doi.org/10.5194/esd-9-969-2018, 2018
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The prediction of the El Niño phenomenon, an increased sea surface temperature in the eastern Pacific, fascinates people for a long time. El Niño is associated with natural disasters, such as droughts and floods. Current methods can make a reliable prediction of this phenomenon up to 6 months ahead. However, this article presents a method which combines network theory and machine learning which predicts El Niño up to 1 year ahead.
Iris Manola, Bart van den Hurk, Hans De Moel, and Jeroen C. J. H. Aerts
Hydrol. Earth Syst. Sci., 22, 3777–3788, https://doi.org/10.5194/hess-22-3777-2018, https://doi.org/10.5194/hess-22-3777-2018, 2018
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In a warmer climate, it is expected that precipitation intensities will increase and form a considerable risk of high-impact precipitation extremes. We investigate how observed extreme precipitation events would look like if they took place in a future warmer climate. This study applies three methods to transform a historic extreme precipitation event in the Netherlands to a similar event in a future warmer climate, thus compiling a
future weatherscenario.
Sonu Khanal, Nina Ridder, Hylke de Vries, Wilco Terink, and Bart van den Hurk
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2018-103, https://doi.org/10.5194/hess-2018-103, 2018
Revised manuscript not accepted
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This study assesses the possibility of finding near simultaneous storm surge and extreme river discharge using an extended data set derived from a storm surge model and two hydrological river-discharge models forced with conditions from a highresolution climate model in ensemble model. The study highlights that the hazard of a co-occurrence of high river discharge and coastal water levels cannot be neglected in a robust risk assessment.
Michiel Baatsen, Anna S. von der Heydt, Matthew Huber, Michael A. Kliphuis, Peter K. Bijl, Appy Sluijs, and Henk A. Dijkstra
Clim. Past Discuss., https://doi.org/10.5194/cp-2018-43, https://doi.org/10.5194/cp-2018-43, 2018
Revised manuscript not accepted
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The Eocene marks a period where the climate was in a hothouse state, without any continental-scale ice sheets. Such climates have proven difficult to reproduce in models, especially their low temperature difference between equator and poles. Here, we present high resolution CESM simulations using a new geographic reconstruction of the middle-to-late Eocene. The results provide new insights into a period for which knowledge is limited, leading up to a transition into the present icehouse state.
Brian J. Dermody, Murugesu Sivapalan, Elke Stehfest, Detlef P. van Vuuren, Martin J. Wassen, Marc F. P. Bierkens, and Stefan C. Dekker
Earth Syst. Dynam., 9, 103–118, https://doi.org/10.5194/esd-9-103-2018, https://doi.org/10.5194/esd-9-103-2018, 2018
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Ensuring sustainable food and water security is an urgent and complex challenge. As the world becomes increasingly globalised and interdependent, food and water management policies may have unintended consequences across regions, sectors and scales. Current decision-making tools do not capture these complexities and thus miss important dynamics. We present a modelling framework to capture regional and sectoral interdependence and cross-scale feedbacks within the global food system.
Konstantinos Bischiniotis, Bart van den Hurk, Brenden Jongman, Erin Coughlan de Perez, Ted Veldkamp, Hans de Moel, and Jeroen Aerts
Nat. Hazards Earth Syst. Sci., 18, 271–285, https://doi.org/10.5194/nhess-18-271-2018, https://doi.org/10.5194/nhess-18-271-2018, 2018
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Preparedness activities and flood forecasting have received increasing attention and have led towards new science-based early warning systems. Understanding the flood triggering mechanisms will result in increasing warning lead times, providing sufficient time for early action. Findings of this study indicate that the consideration of short- and long-term antecedent conditions can be used by humanitarian organizations and decision makers for improved flood risk management.
Maarten C. Braakhekke, Karin T. Rebel, Stefan C. Dekker, Benjamin Smith, Arthur H. W. Beusen, and Martin J. Wassen
Earth Syst. Dynam., 8, 1121–1139, https://doi.org/10.5194/esd-8-1121-2017, https://doi.org/10.5194/esd-8-1121-2017, 2017
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Nitrogen input in natural ecosystems usually has a positive effect on plant growth. However, too much N causes N leaching, which contributes to water pollution. Using a global model we estimated that N leaching from natural lands has increased by 73 % during the 20th century, mainly due to rising N deposition from the atmosphere caused by emissions from fossil fuels and agriculture. Climate change and increasing CO2 concentration had positive and negative effects (respectively) on N leaching.
Erin Coughlan de Perez, Elisabeth Stephens, Konstantinos Bischiniotis, Maarten van Aalst, Bart van den Hurk, Simon Mason, Hannah Nissan, and Florian Pappenberger
Hydrol. Earth Syst. Sci., 21, 4517–4524, https://doi.org/10.5194/hess-21-4517-2017, https://doi.org/10.5194/hess-21-4517-2017, 2017
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Disaster managers would like to use seasonal forecasts to anticipate flooding months in advance. However, current seasonal forecasts give information on rainfall instead of flooding. Here, we find that the number of extreme events, rather than total rainfall, is most related to flooding in different regions of Africa. We recommend several forecast adjustments and research opportunities that would improve flood information at the seasonal timescale in different regions.
Inti Pelupessy, Ben van Werkhoven, Arjen van Elteren, Jan Viebahn, Adam Candy, Simon Portegies Zwart, and Henk Dijkstra
Geosci. Model Dev., 10, 3167–3187, https://doi.org/10.5194/gmd-10-3167-2017, https://doi.org/10.5194/gmd-10-3167-2017, 2017
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Researchers from the Netherlands present OMUSE, a software package
developed from core technology originating in the astrophysical
community. Using OMUSE, oceanographic and climate researchers can
develop numerical models of the ocean and the interactions between
different parts of the ocean and the atmosphere. This provides a novel
way to investigate, for example, the local effects of climate change on
the ocean. OMUSE is freely available as open-source software.
Brenda C. van Zalinge, Qing Yi Feng, Matthias Aengenheyster, and Henk A. Dijkstra
Earth Syst. Dynam., 8, 707–717, https://doi.org/10.5194/esd-8-707-2017, https://doi.org/10.5194/esd-8-707-2017, 2017
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The increase in atmospheric greenhouse gases (GHGs) is one of the main causes for the increase in global mean surface temperature. There is no good quantitative measure to determine when it is
too lateto start reducing GHGs in order to avoid dangerous anthropogenic interference. We develop a method for determining a so-called point of no return (PNR) for several GHG emission scenarios. The innovative element in this approach is the applicability to high-dimensional climate models.
Daniel J. Lunt, Matthew Huber, Eleni Anagnostou, Michiel L. J. Baatsen, Rodrigo Caballero, Rob DeConto, Henk A. Dijkstra, Yannick Donnadieu, David Evans, Ran Feng, Gavin L. Foster, Ed Gasson, Anna S. von der Heydt, Chris J. Hollis, Gordon N. Inglis, Stephen M. Jones, Jeff Kiehl, Sandy Kirtland Turner, Robert L. Korty, Reinhardt Kozdon, Srinath Krishnan, Jean-Baptiste Ladant, Petra Langebroek, Caroline H. Lear, Allegra N. LeGrande, Kate Littler, Paul Markwick, Bette Otto-Bliesner, Paul Pearson, Christopher J. Poulsen, Ulrich Salzmann, Christine Shields, Kathryn Snell, Michael Stärz, James Super, Clay Tabor, Jessica E. Tierney, Gregory J. L. Tourte, Aradhna Tripati, Garland R. Upchurch, Bridget S. Wade, Scott L. Wing, Arne M. E. Winguth, Nicky M. Wright, James C. Zachos, and Richard E. Zeebe
Geosci. Model Dev., 10, 889–901, https://doi.org/10.5194/gmd-10-889-2017, https://doi.org/10.5194/gmd-10-889-2017, 2017
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In this paper we describe the experimental design for a set of simulations which will be carried out by a range of climate models, all investigating the climate of the Eocene, about 50 million years ago. The intercomparison of model results is called 'DeepMIP', and we anticipate that we will contribute to the next IPCC report through an analysis of these simulations and the geological data to which we will compare them.
S.-E. Brunnabend, H. A. Dijkstra, M. A. Kliphuis, H. E. Bal, F. Seinstra, B. van Werkhoven, J. Maassen, and M. van Meersbergen
Ocean Sci., 13, 47–60, https://doi.org/10.5194/os-13-47-2017, https://doi.org/10.5194/os-13-47-2017, 2017
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An important contribution to future changes in regional sea level extremes is due to the changes in intrinsic ocean variability, in particular ocean eddies. Here, we study a scenario of future dynamic sea level (DSL) extremes using a strongly eddying version of the Parallel Ocean Program. Changes in 10-year return time DSL extremes are very inhomogeneous over the globe and are related to changes in ocean currents and corresponding regional shifts in ocean eddy pathways.
Rémon Saaltink, Stefan C. Dekker, Jasper Griffioen, and Martin J. Wassen
Biogeosciences, 13, 4945–4957, https://doi.org/10.5194/bg-13-4945-2016, https://doi.org/10.5194/bg-13-4945-2016, 2016
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We identified biogeochemical plant–soil feedback processes that occur when oxidation, drying and modification by plants alter sediment conditions. Wetland construction in Markermeer (a lake in the Netherlands) is used as a case study. Natural processes will be utilized during and after construction to accelerate ecosystem development. We conducted a 6-month greenhouse experiment to identify the key biogeochemical processes in the mud when Phragmites australis is used as an eco-engineer.
Erin Coughlan de Perez, Bart van den Hurk, Maarten K. van Aalst, Irene Amuron, Deus Bamanya, Tristan Hauser, Brenden Jongma, Ana Lopez, Simon Mason, Janot Mendler de Suarez, Florian Pappenberger, Alexandra Rueth, Elisabeth Stephens, Pablo Suarez, Jurjen Wagemaker, and Ervin Zsoter
Hydrol. Earth Syst. Sci., 20, 3549–3560, https://doi.org/10.5194/hess-20-3549-2016, https://doi.org/10.5194/hess-20-3549-2016, 2016
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Many flood disaster impacts could be avoided by preventative action; however, early action is not guaranteed. This article demonstrates the design of a new system of forecast-based financing, which automatically triggers action when a flood forecast arrives, before a potential disaster. We establish "action triggers" for northern Uganda based on a global flood forecasting system, verifying these forecasts and assessing the uncertainties inherent in setting a trigger in a data-scarce location.
Bart van den Hurk, Hyungjun Kim, Gerhard Krinner, Sonia I. Seneviratne, Chris Derksen, Taikan Oki, Hervé Douville, Jeanne Colin, Agnès Ducharne, Frederique Cheruy, Nicholas Viovy, Michael J. Puma, Yoshihide Wada, Weiping Li, Binghao Jia, Andrea Alessandri, Dave M. Lawrence, Graham P. Weedon, Richard Ellis, Stefan Hagemann, Jiafu Mao, Mark G. Flanner, Matteo Zampieri, Stefano Materia, Rachel M. Law, and Justin Sheffield
Geosci. Model Dev., 9, 2809–2832, https://doi.org/10.5194/gmd-9-2809-2016, https://doi.org/10.5194/gmd-9-2809-2016, 2016
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This manuscript describes the setup of the CMIP6 project Land Surface, Snow and Soil Moisture Model Intercomparison Project (LS3MIP).
Michiel Baatsen, Douwe J. J. van Hinsbergen, Anna S. von der Heydt, Henk A. Dijkstra, Appy Sluijs, Hemmo A. Abels, and Peter K. Bijl
Clim. Past, 12, 1635–1644, https://doi.org/10.5194/cp-12-1635-2016, https://doi.org/10.5194/cp-12-1635-2016, 2016
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One of the major difficulties in modelling palaeoclimate is constricting the boundary conditions, causing significant discrepancies between different studies. Here, a new method is presented to automate much of the process of generating the necessary geographical reconstructions. The latter can be made using various rotational frameworks and topography/bathymetry input, allowing for easy inter-comparisons and the incorporation of the latest insights from geoscientific research.
Stefan C. Dekker, Margriet Groenendijk, Ben B. B. Booth, Chris Huntingford, and Peter M. Cox
Earth Syst. Dynam., 7, 525–533, https://doi.org/10.5194/esd-7-525-2016, https://doi.org/10.5194/esd-7-525-2016, 2016
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Our analysis allows us to infer maps of changing plant water-use efficiency (WUE) for 1901–2010, using atmospheric observations of temperature, humidity and CO2. Our estimated increase in global WUE is consistent with the tree-ring and eddy covariance data, but much larger than the historical WUE increases simulated by Earth System Models (ESMs). We therefore conclude that the effects of increasing CO2 on plant WUE are significantly underestimated in the latest climate projections.
Zun Yin, Stefan C. Dekker, Bart J. J. M. van den Hurk, and Henk A. Dijkstra
Biogeosciences, 13, 3343–3357, https://doi.org/10.5194/bg-13-3343-2016, https://doi.org/10.5194/bg-13-3343-2016, 2016
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Bimodality is found in aboveground biomass and mean annual shortwave radiation in West Africa, which is a strong evidence of alternative stable states. The condition with low biomass and low radiation is demonstrated under which ecosystem state can shift between savanna and forest states. Moreover, climatic indicators have different prediction confidences to different land cover types. A new method is proposed to predict potential land cover change with a combination of climatic indicators.
Patrick W. Bogaart, Ype van der Velde, Steve W. Lyon, and Stefan C. Dekker
Hydrol. Earth Syst. Sci., 20, 1413–1432, https://doi.org/10.5194/hess-20-1413-2016, https://doi.org/10.5194/hess-20-1413-2016, 2016
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We analyse how stream discharge declines after rain storms. This "recession" behaviour contains information about the capacity of the catchment to hold or release water. Looking at many rivers in Sweden, we were able to link distinct recession regimes to land use and catchment characteristics. Trends in recession behaviour are found to correspond to intensifying agriculture and extensive reforestation. We conclude that both humans and nature reorganizes the soil in order to enhance efficiency.
Qing Yi Feng, Ruggero Vasile, Marc Segond, Avi Gozolchiani, Yang Wang, Markus Abel, Shilomo Havlin, Armin Bunde, and Henk A. Dijkstra
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2015-273, https://doi.org/10.5194/gmd-2015-273, 2016
Revised manuscript not accepted
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We present the toolbox ClimateLearn to tackle problems in climate prediction using machine learning techniques and climate network analysis. Because spatial temporal information on climate variability can be efficiently represented by complex network measures, such data are considered here as input to the machine-learning algorithms. As an example, the toolbox is applied to the prediction of the occurrence and the development of El Niño in the equatorial Pacific.
H. Ihshaish, A. Tantet, J. C. M. Dijkzeul, and H. A. Dijkstra
Geosci. Model Dev., 8, 3321–3331, https://doi.org/10.5194/gmd-8-3321-2015, https://doi.org/10.5194/gmd-8-3321-2015, 2015
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Par@Graph, a software toolbox to reconstruct and analyze large-scale complex climate networks. It exposes parallelism on distributed-memory computing platforms to enable the construction of massive networks from large number of time series based on the calculation of common statistical similarity measures between them. Providing additionally parallel graph algorithms to enable fast calculation of important and common properties of the generated networks on SMP machines.
J. Mao, K. G. J. Nierop, M. Rietkerk, and S. C. Dekker
SOIL, 1, 411–425, https://doi.org/10.5194/soil-1-411-2015, https://doi.org/10.5194/soil-1-411-2015, 2015
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In this study we show how soil water repellency (SWR) is linked to the quantity and quality of SWR markers in soils mainly derived from vegetation. To predict the SWR of topsoils, we find the strongest relationship with ester-bound alcohols, and for subsoils with root-derived ω-hydroxy fatty acids and α,ω-dicarboxylic acids. From this we conclude that, overall, roots influence SWR more strongly than leaves and subsequently SWR markers derived from roots predict SWR better.
E. Coughlan de Perez, B. van den Hurk, M. K. van Aalst, B. Jongman, T. Klose, and P. Suarez
Nat. Hazards Earth Syst. Sci., 15, 895–904, https://doi.org/10.5194/nhess-15-895-2015, https://doi.org/10.5194/nhess-15-895-2015, 2015
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How can we use weather or climate forecasts to avoid disasters? This article offers a framework for determining when it is "worth" taking action to try to avoid a potential disaster. Considering forecast probabilities, actions, and funding constraints, we propose a novel forecast-based financing system that would automatically trigger action based on forecasts of increased risks.
M. Baudena, S. C. Dekker, P. M. van Bodegom, B. Cuesta, S. I. Higgins, V. Lehsten, C. H. Reick, M. Rietkerk, S. Scheiter, Z. Yin, M. A. Zavala, and V. Brovkin
Biogeosciences, 12, 1833–1848, https://doi.org/10.5194/bg-12-1833-2015, https://doi.org/10.5194/bg-12-1833-2015, 2015
L. Hahn-Woernle, H. A. Dijkstra, and H. J. Van der Woerd
Ocean Sci., 10, 993–1011, https://doi.org/10.5194/os-10-993-2014, https://doi.org/10.5194/os-10-993-2014, 2014
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Measured vertical mixing profiles are applied to a 1-D phytoplankton model. Results show that shifts in vertical mixing are able to induce a transition from an upper chlorophyll maximum to a deep one and vice versa. Furthermore, a clear correlation between the surface phytoplankton concentration and mixing-induced nutrient flux is found for nutrient-limited cases. This result suggests that characteristics of the vertical mixing could be determined from the surface phytoplankton concentration.
B. J. Dermody, R. P. H. van Beek, E. Meeks, K. Klein Goldewijk, W. Scheidel, Y. van der Velde, M. F. P. Bierkens, M. J. Wassen, and S. C. Dekker
Hydrol. Earth Syst. Sci., 18, 5025–5040, https://doi.org/10.5194/hess-18-5025-2014, https://doi.org/10.5194/hess-18-5025-2014, 2014
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Our virtual water network of the Roman World shows that virtual water trade and irrigation provided the Romans with resilience to interannual climate variability. Virtual water trade enabled the Romans to meet food demands from regions with a surplus. Irrigation provided stable water supplies for agriculture, particularly in large river catchments. However, virtual water trade also stimulated urbanization and population growth, which eroded Roman resilience to climate variability over time.
S.-E. Brunnabend, H. A. Dijkstra, M. A. Kliphuis, B. van Werkhoven, H. E. Bal, F. Seinstra, J. Maassen, and M. van Meersbergen
Ocean Sci., 10, 881–891, https://doi.org/10.5194/os-10-881-2014, https://doi.org/10.5194/os-10-881-2014, 2014
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Regional sea surface height (SSH) changes due to an abrupt weakening of the Atlantic meridional overturning circulation (AMOC) are simulated with a high- and low-resolution model. A rapid decrease of the AMOC in the high-resolution version induces shorter return times of several specific regional and coastal extremes in North Atlantic SSH than in the low-resolution version. This effect is caused by a change in main eddy pathways associated with a change in separation latitude of the Gulf Stream.
B. P. Guillod, B. Orlowsky, D. Miralles, A. J. Teuling, P. D. Blanken, N. Buchmann, P. Ciais, M. Ek, K. L. Findell, P. Gentine, B. R. Lintner, R. L. Scott, B. Van den Hurk, and S. I. Seneviratne
Atmos. Chem. Phys., 14, 8343–8367, https://doi.org/10.5194/acp-14-8343-2014, https://doi.org/10.5194/acp-14-8343-2014, 2014
S. J. Sutanto, B. van den Hurk, P. A. Dirmeyer, S. I. Seneviratne, T. Röckmann, K. E. Trenberth, E. M. Blyth, J. Wenninger, and G. Hoffmann
Hydrol. Earth Syst. Sci., 18, 2815–2827, https://doi.org/10.5194/hess-18-2815-2014, https://doi.org/10.5194/hess-18-2815-2014, 2014
Z. Yin, S. C. Dekker, B. J. J. M. van den Hurk, and H. A. Dijkstra
Earth Syst. Dynam., 5, 257–270, https://doi.org/10.5194/esd-5-257-2014, https://doi.org/10.5194/esd-5-257-2014, 2014
D. Le Bars, J. V. Durgadoo, H. A. Dijkstra, A. Biastoch, and W. P. M. De Ruijter
Ocean Sci., 10, 601–609, https://doi.org/10.5194/os-10-601-2014, https://doi.org/10.5194/os-10-601-2014, 2014
L. Batlle-Bayer, B. J. J. M. van den Hurk, C. Müller, and J. van Minnen
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esdd-5-585-2014, https://doi.org/10.5194/esdd-5-585-2014, 2014
Revised manuscript has not been submitted
G. Sgubin, S. Pierini, and H. A. Dijkstra
Ocean Sci., 10, 201–213, https://doi.org/10.5194/os-10-201-2014, https://doi.org/10.5194/os-10-201-2014, 2014
A. Tantet and H. A. Dijkstra
Earth Syst. Dynam., 5, 1–14, https://doi.org/10.5194/esd-5-1-2014, https://doi.org/10.5194/esd-5-1-2014, 2014
A. A. Cimatoribus, S. Drijfhout, and H. A. Dijkstra
Ocean Sci. Discuss., https://doi.org/10.5194/osd-10-2461-2013, https://doi.org/10.5194/osd-10-2461-2013, 2013
Preprint withdrawn
A. S. von der Heydt, A. Nnafie, and H. A. Dijkstra
Clim. Past, 7, 903–915, https://doi.org/10.5194/cp-7-903-2011, https://doi.org/10.5194/cp-7-903-2011, 2011
M. Tigchelaar, A. S. von der Heydt, and H. A. Dijkstra
Clim. Past, 7, 235–247, https://doi.org/10.5194/cp-7-235-2011, https://doi.org/10.5194/cp-7-235-2011, 2011
J. O. Sewall, R. S. W. van de Wal, K. van der Zwan, C. van Oosterhout, H. A. Dijkstra, and C. R. Scotese
Clim. Past, 3, 647–657, https://doi.org/10.5194/cp-3-647-2007, https://doi.org/10.5194/cp-3-647-2007, 2007
Related subject area
Biogeosciences
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Optimising CH4 simulations from the LPJ-GUESS model v4.1 using an adaptive Markov chain Monte Carlo algorithm
The XSO framework (v0.1) and Phydra library (v0.1) for a flexible, reproducible, and integrated plankton community modeling environment in Python
AgriCarbon-EO v1.0.1: large-scale and high-resolution simulation of carbon fluxes by assimilation of Sentinel-2 and Landsat-8 reflectances using a Bayesian approach
SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation
A model of the within-population variability of budburst in forest trees
Computationally efficient parameter estimation for high-dimensional ocean biogeochemical models
The community-centered freshwater biogeochemistry model unified RIVE v1.0: a unified version for water column
Observation-based sowing dates and cultivars significantly affect yield and irrigation for some crops in the Community Land Model (CLM5)
The statistical emulators of GGCMI phase 2: responses of year-to-year variation of crop yield to CO2, temperature, water, and nitrogen perturbations
A novel Eulerian model based on central moments to simulate age and reactivity continua interacting with mixing processes
Dynamic ecosystem assembly and escaping the “fire-trap” in the tropics: Insights from FATES_15.0.0
AdaScape 1.0: a coupled modelling tool to investigate the links between tectonics, climate, and biodiversity
An along-track Biogeochemical Argo modelling framework: a case study of model improvements for the Nordic seas
A global behavioural model of human fire use and management: WHAM! v1.0
Peatland-VU-NUCOM (PVN 1.0): using dynamic plant functional types to model peatland vegetation, CH4, and CO2 emissions
Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): calibration-free calculations of water and energy fluxes
biospheremetrics v1.0.1: An R package to calculate two complementary terrestrial biosphere integrity indicators: human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
SedTrace 1.0: a Julia-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes
A high-resolution marine mercury model MITgcm-ECCO2-Hg with online biogeochemistry
Improving nitrogen cycling in a land surface model (CLM5) to quantify soil N2O, NO, and NH3 emissions from enhanced rock weathering with croplands
Ocean biogeochemistry in the coupled ocean–sea ice–biogeochemistry model FESOM2.1–REcoM3
In-silico calculation of soil pH by SCEPTER v1.0
Forcing the Global Fire Emissions Database burned-area dataset into the Community Land Model version 5.0: impacts on carbon and water fluxes at high latitudes
Modeling of non-structural carbohydrate dynamics by the spatially explicit individual-based dynamic global vegetation model SEIB-DGVM (SEIB-DGVM-NSC version 1.0)
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: Simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
MEDFATE 2.9.3: a trait-enabled model to simulate Mediterranean forest function and dynamics at regional scales
Modelling the role of livestock grazing in C and N cycling in grasslands with LPJmL5.0-grazing
Implementation of trait-based ozone plant sensitivity in the Yale Interactive terrestrial Biosphere model v1.0 to assess global vegetation damage
The Permafrost and Organic LayEr module for Forest Models (POLE-FM) 1.0
CompLaB v1.0: a scalable pore-scale model for flow, biogeochemistry, microbial metabolism, and biofilm dynamics
Validation of a new spatially explicit process-based model (HETEROFOR) to simulate structurally and compositionally complex forest stands in eastern North America
Global agricultural ammonia emissions simulated with the ORCHIDEE land surface model
ForamEcoGEnIE 2.0: incorporating symbiosis and spine traits into a trait-based global planktic foraminiferal model
FABM-NflexPD 2.0: testing an instantaneous acclimation approach for modeling the implications of phytoplankton eco-physiology for the carbon and nutrient cycles
Evaluating the vegetation–atmosphere coupling strength of ORCHIDEE land surface model (v7266)
Non-Redfieldian carbon model for the Baltic Sea (ERGOM version 1.2) – implementation and budget estimates
Implementation of a new crop phenology and irrigation scheme in the ISBA land surface model using SURFEX_v8.1
Simulating long-term responses of soil organic matter turnover to substrate stoichiometry by abstracting fast and small-scale microbial processes: the Soil Enzyme Steady Allocation Model (SESAM; v3.0)
Modeling demographic-driven vegetation dynamics and ecosystem biogeochemical cycling in NASA GISS's Earth system model (ModelE-BiomeE v.1.0)
Forest fluxes and mortality response to drought: model description (ORCHIDEE-CAN-NHA r7236) and evaluation at the Caxiuanã drought experiment
Matrix representation of lateral soil movements: scaling and calibrating CE-DYNAM (v2) at a continental level
CANOPS-GRB v1.0: a new Earth system model for simulating the evolution of ocean–atmosphere chemistry over geologic timescales
Low sensitivity of three terrestrial biosphere models to soil texture over the South American tropics
FESDIA (v1.0): exploring temporal variations of sediment biogeochemistry under the influence of flood events using numerical modelling
Impact of changes in climate and CO2 on the carbon storage potential of vegetation under limited water availability using SEIB-DGVM version 3.02
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
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By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
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Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
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Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Jalisha T. Kallingal, Johan Lindström, Paul A. Miller, Janne Rinne, Maarit Raivonen, and Marko Scholze
Geosci. Model Dev., 17, 2299–2324, https://doi.org/10.5194/gmd-17-2299-2024, https://doi.org/10.5194/gmd-17-2299-2024, 2024
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By unlocking the mysteries of CH4 emissions from wetlands, our work improved the accuracy of the LPJ-GUESS vegetation model using Bayesian statistics. Via assimilation of long-term real data from a wetland, we significantly enhanced CH4 emission predictions. This advancement helps us better understand wetland contributions to atmospheric CH4, which are crucial for addressing climate change. Our method offers a promising tool for refining global climate models and guiding conservation efforts
Benjamin Post, Esteban Acevedo-Trejos, Andrew D. Barton, and Agostino Merico
Geosci. Model Dev., 17, 1175–1195, https://doi.org/10.5194/gmd-17-1175-2024, https://doi.org/10.5194/gmd-17-1175-2024, 2024
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Creating computational models of how phytoplankton grows in the ocean is a technical challenge. We developed a new tool set (Xarray-simlab-ODE) for building such models using the programming language Python. We demonstrate the tool set in a library of plankton models (Phydra). Our goal was to allow scientists to develop models quickly, while also allowing the model structures to be changed easily. This allows us to test many different structures of our models to find the most appropriate one.
Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Remy Fieuzal, and Eric Ceschia
Geosci. Model Dev., 17, 997–1021, https://doi.org/10.5194/gmd-17-997-2024, https://doi.org/10.5194/gmd-17-997-2024, 2024
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Quantification of carbon fluxes of crops is an essential building block for the construction of a monitoring, reporting, and verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates, through a Bayesian approach, high-resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in situ flux towers and yield maps and analysed at regional scale.
Moritz Laub, Sergey Blagodatsky, Marijn Van de Broek, Samuel Schlichenmaier, Benjapon Kunlanit, Johan Six, Patma Vityakon, and Georg Cadisch
Geosci. Model Dev., 17, 931–956, https://doi.org/10.5194/gmd-17-931-2024, https://doi.org/10.5194/gmd-17-931-2024, 2024
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To manage soil organic matter (SOM) sustainably, we need a better understanding of the role that soil microbes play in aggregate protection. Here, we propose the SAMM model, which connects soil aggregate formation to microbial growth. We tested it against data from a tropical long-term experiment and show that SAMM effectively represents the microbial growth, SOM, and aggregate dynamics and that it can be used to explore the importance of aggregate formation in SOM stabilization.
Jianhong Lin, Daniel Berveiller, Christophe François, Heikki Hänninen, Alexandre Morfin, Gaëlle Vincent, Rui Zhang, Cyrille Rathgeber, and Nicolas Delpierre
Geosci. Model Dev., 17, 865–879, https://doi.org/10.5194/gmd-17-865-2024, https://doi.org/10.5194/gmd-17-865-2024, 2024
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Currently, the high variability of budburst between individual trees is overlooked. The consequences of this neglect when projecting the dynamics and functioning of tree communities are unknown. Here we develop the first process-oriented model to describe the difference in budburst dates between individual trees in plant populations. Beyond budburst, the model framework provides a basis for studying the dynamics of phenological traits under climate change, from the individual to the community.
Skyler Kern, Mary E. McGuinn, Katherine M. Smith, Nadia Pinardi, Kyle E. Niemeyer, Nicole S. Lovenduski, and Peter E. Hamlington
Geosci. Model Dev., 17, 621–649, https://doi.org/10.5194/gmd-17-621-2024, https://doi.org/10.5194/gmd-17-621-2024, 2024
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Computational models are used to simulate the behavior of marine ecosystems. The models often have unknown parameters that need to be calibrated to accurately represent observational data. Here, we propose a novel approach to simultaneously determine a large set of parameters for a one-dimensional model of a marine ecosystem in the surface ocean at two contrasting sites. By utilizing global and local optimization techniques, we estimate many parameters in a computationally efficient manner.
Shuaitao Wang, Vincent Thieu, Gilles Billen, Josette Garnier, Marie Silvestre, Audrey Marescaux, Xingcheng Yan, and Nicolas Flipo
Geosci. Model Dev., 17, 449–476, https://doi.org/10.5194/gmd-17-449-2024, https://doi.org/10.5194/gmd-17-449-2024, 2024
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This paper presents unified RIVE v1.0, a unified version of the freshwater biogeochemistry model RIVE. It harmonizes different RIVE implementations, providing the referenced formalisms for microorganism activities to describe full biogeochemical cycles in the water column (e.g., carbon, nutrients, oxygen). Implemented as open-source projects in Python 3 (pyRIVE 1.0) and ANSI C (C-RIVE 0.32), unified RIVE v1.0 promotes and enhances collaboration among research teams and public services.
Sam S. Rabin, William J. Sacks, Danica L. Lombardozzi, Lili Xia, and Alan Robock
Geosci. Model Dev., 16, 7253–7273, https://doi.org/10.5194/gmd-16-7253-2023, https://doi.org/10.5194/gmd-16-7253-2023, 2023
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Climate models can help us simulate how the agricultural system will be affected by and respond to environmental change, but to be trustworthy they must realistically reproduce historical patterns. When farmers plant their crops and what varieties they choose will be important aspects of future adaptation. Here, we improve the crop component of a global model to better simulate observed growing seasons and examine the impacts on simulated crop yields and irrigation demand.
Weihang Liu, Tao Ye, Christoph Müller, Jonas Jägermeyr, James A. Franke, Haynes Stephens, and Shuo Chen
Geosci. Model Dev., 16, 7203–7221, https://doi.org/10.5194/gmd-16-7203-2023, https://doi.org/10.5194/gmd-16-7203-2023, 2023
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We develop a machine-learning-based crop model emulator with the inputs and outputs of multiple global gridded crop model ensemble simulations to capture the year-to-year variation of crop yield under future climate change. The emulator can reproduce the year-to-year variation of simulated yield given by the crop models under CO2, temperature, water, and nitrogen perturbations. Developing this emulator can provide a tool to project future climate change impact in a simple way.
Jurjen Rooze, Heewon Jung, and Hagen Radtke
Geosci. Model Dev., 16, 7107–7121, https://doi.org/10.5194/gmd-16-7107-2023, https://doi.org/10.5194/gmd-16-7107-2023, 2023
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Chemical particles in nature have properties such as age or reactivity. Distributions can describe the properties of chemical concentrations. In nature, they are affected by mixing processes, such as chemical diffusion, burrowing animals, and bottom trawling. We derive equations for simulating the effect of mixing on central moments that describe the distributions. We then demonstrate applications in which these equations are used to model continua in disturbed natural environments.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles D. Koven, Ryan G. Knox, Lara M. Kueppers, and Chonggang Xu
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-191, https://doi.org/10.5194/gmd-2023-191, 2023
Revised manuscript accepted for GMD
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We adapt a fire-behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Esteban Acevedo-Trejos, Jean Braun, Katherine Kravitz, N. Alexia Raharinirina, and Benoît Bovy
Geosci. Model Dev., 16, 6921–6941, https://doi.org/10.5194/gmd-16-6921-2023, https://doi.org/10.5194/gmd-16-6921-2023, 2023
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The interplay of tectonics and climate influences the evolution of life and the patterns of biodiversity we observe on earth's surface. Here we present an adaptive speciation component coupled with a landscape evolution model that captures the essential earth-surface, ecological, and evolutionary processes that lead to the diversification of taxa. We can illustrate with our tool how life and landforms co-evolve to produce distinct biodiversity patterns on geological timescales.
Veli Çağlar Yumruktepe, Erik Askov Mousing, Jerry Tjiputra, and Annette Samuelsen
Geosci. Model Dev., 16, 6875–6897, https://doi.org/10.5194/gmd-16-6875-2023, https://doi.org/10.5194/gmd-16-6875-2023, 2023
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We present an along BGC-Argo track 1D modelling framework. The model physics is constrained by the BGC-Argo temperature and salinity profiles to reduce the uncertainties related to mixed layer dynamics, allowing the evaluation of the biogeochemical formulation and parameterization. We objectively analyse the model with BGC-Argo and satellite data and improve the model biogeochemical dynamics. We present the framework, example cases and routines for model improvement and implementations.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James Millington
EGUsphere, https://doi.org/10.5194/egusphere-2023-2162, https://doi.org/10.5194/egusphere-2023-2162, 2023
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Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Tanya J. R. Lippmann, Ype van der Velde, Monique M. P. D. Heijmans, Han Dolman, Dimmie M. D. Hendriks, and Ko van Huissteden
Geosci. Model Dev., 16, 6773–6804, https://doi.org/10.5194/gmd-16-6773-2023, https://doi.org/10.5194/gmd-16-6773-2023, 2023
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Vegetation is a critical component of carbon storage in peatlands but an often-overlooked concept in many peatland models. We developed a new model capable of simulating the response of vegetation to changing environments and management regimes. We evaluated the model against observed chamber data collected at two peatland sites. We found that daily air temperature, water level, harvest frequency and height, and vegetation composition drive methane and carbon dioxide emissions.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
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We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
EGUsphere, https://doi.org/10.5194/egusphere-2023-1626, https://doi.org/10.5194/egusphere-2023-1626, 2023
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Numerous estimations of water and energy balances heavily depend on empirical equations that necessitate site-specific calibration. This equifinality poses the risk of obtaining 'right answers for wrong reasons.' In this paper, we introduce novel formulations based on first-principles to calculate calibration-free quantities, such as net radiation, evapotranspiration, condensation, soil water content, surface runoff, subsurface lateral flow, and snow-water equivalent.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
EGUsphere, https://doi.org/10.5194/egusphere-2023-2503, https://doi.org/10.5194/egusphere-2023-2503, 2023
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We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract >25 % of the potential pre-industrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of land, water, and fertilizer use, as well as climate change.
Jianghui Du
Geosci. Model Dev., 16, 5865–5894, https://doi.org/10.5194/gmd-16-5865-2023, https://doi.org/10.5194/gmd-16-5865-2023, 2023
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Trace elements and isotopes (TEIs) are important tools to study the changes in the ocean environment both today and in the past. However, the behaviors of TEIs in marine sediments are poorly known, limiting our ability to use them in oceanography. Here we present a modeling framework that can be used to generate and run models of the sedimentary cycling of TEIs assisted with advanced numerical tools in the Julia language, lowering the coding barrier for the general user to study marine TEIs.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
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In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Maria Val Martin, Elena Blanc-Betes, Ka Ming Fung, Euripides P. Kantzas, Ilsa B. Kantola, Isabella Chiaravalloti, Lyla L. Taylor, Louisa K. Emmons, William R. Wieder, Noah J. Planavsky, Michael D. Masters, Evan H. DeLucia, Amos P. K. Tai, and David J. Beerling
Geosci. Model Dev., 16, 5783–5801, https://doi.org/10.5194/gmd-16-5783-2023, https://doi.org/10.5194/gmd-16-5783-2023, 2023
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Enhanced rock weathering (ERW) is a CO2 removal strategy that involves applying crushed rocks (e.g., basalt) to agricultural soils. However, unintended processes within the N cycle due to soil pH changes may affect the climate benefits of C sequestration. ERW could drive changes in soil emissions of non-CO2 GHGs (N2O) and trace gases (NO and NH3) that may affect air quality. We present a new improved N cycling scheme for the land model (CLM5) to evaluate ERW effects on soil gas N emissions.
Özgür Gürses, Laurent Oziel, Onur Karakuş, Dmitry Sidorenko, Christoph Völker, Ying Ye, Moritz Zeising, Martin Butzin, and Judith Hauck
Geosci. Model Dev., 16, 4883–4936, https://doi.org/10.5194/gmd-16-4883-2023, https://doi.org/10.5194/gmd-16-4883-2023, 2023
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This paper assesses the biogeochemical model REcoM3 coupled to the ocean–sea ice model FESOM2.1. The model can be used to simulate the carbon uptake or release of the ocean on timescales of several hundred years. A detailed analysis of the nutrients, ocean productivity, and ecosystem is followed by the carbon cycle. The main conclusion is that the model performs well when simulating the observed mean biogeochemical state and variability and is comparable to other ocean–biogeochemical models.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2023-137, https://doi.org/10.5194/gmd-2023-137, 2023
Revised manuscript accepted for GMD
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater pH and bulk soil pH is thus crucial to accurate evaluation of alkalinity required to counteract soil acidification and resulting capture of anthropogenic carbon dioxide through the Enhanced Rock Weathering technique. This has been enabled by the updated reactive-transport SCEPTER code and newly developed framework to simulate soil pH.
Hocheol Seo and Yeonjoo Kim
Geosci. Model Dev., 16, 4699–4713, https://doi.org/10.5194/gmd-16-4699-2023, https://doi.org/10.5194/gmd-16-4699-2023, 2023
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Wildfire is a crucial factor in carbon and water fluxes on the Earth system. About 2.1 Pg of carbon is released into the atmosphere by wildfires annually. Because the fire processes are still limitedly represented in land surface models, we forced the daily GFED4 burned area into the land surface model over Alaska and Siberia. The results with the GFED4 burned area significantly improved the simulated carbon emissions and net ecosystem exchange compared to the default simulation.
Hideki Ninomiya, Tomomichi Kato, Lea Végh, and Lan Wu
Geosci. Model Dev., 16, 4155–4170, https://doi.org/10.5194/gmd-16-4155-2023, https://doi.org/10.5194/gmd-16-4155-2023, 2023
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Non-structural carbohydrates (NSCs) play a crucial role in plants to counteract the effects of climate change. We added a new NSC module into the SEIB-DGVM, an individual-based ecosystem model. The simulated NSC levels and their seasonal patterns show a strong agreement with observed NSC data at both point and global scales. The model can be used to simulate the biotic effects resulting from insufficient NSCs, which are otherwise difficult to measure in terrestrial ecosystems globally.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
EGUsphere, https://doi.org/10.5194/egusphere-2023-1287, https://doi.org/10.5194/egusphere-2023-1287, 2023
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We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predict their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that important questions related to plant-atmosphere interactions can be addressed, such as the effects of rising CO2 and ozone pollution on carbon uptake of the biosphere. The model has been well validated with both ground and satellite observations.
Miquel De Cáceres, Roberto Molowny-Horas, Antoine Cabon, Jordi Martínez-Vilalta, Maurizio Mencuccini, Raúl García-Valdés, Daniel Nadal-Sala, Santiago Sabaté, Nicolas Martin-StPaul, Xavier Morin, Francesco D'Adamo, Enric Batllori, and Aitor Améztegui
Geosci. Model Dev., 16, 3165–3201, https://doi.org/10.5194/gmd-16-3165-2023, https://doi.org/10.5194/gmd-16-3165-2023, 2023
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Regional-level applications of dynamic vegetation models are challenging because they need to accommodate the variation in plant functional diversity. This can be done by estimating parameters from available plant trait databases while adopting alternative solutions for missing data. Here we present the design, parameterization and evaluation of MEDFATE (version 2.9.3), a novel model of forest dynamics for its application over a region in the western Mediterranean Basin.
Jens Heinke, Susanne Rolinski, and Christoph Müller
Geosci. Model Dev., 16, 2455–2475, https://doi.org/10.5194/gmd-16-2455-2023, https://doi.org/10.5194/gmd-16-2455-2023, 2023
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We develop a livestock module for the global vegetation model LPJmL5.0 to simulate the impact of grazing dairy cattle on carbon and nitrogen cycles in grasslands. A novelty of the approach is that it accounts for the effect of feed quality on feed uptake and feed utilization by animals. The portioning of dietary nitrogen into milk, feces, and urine shows very good agreement with estimates obtained from animal trials.
Yimian Ma, Xu Yue, Stephen Sitch, Nadine Unger, Johan Uddling, Lina M. Mercado, Cheng Gong, Zhaozhong Feng, Huiyi Yang, Hao Zhou, Chenguang Tian, Yang Cao, Yadong Lei, Alexander W. Cheesman, Yansen Xu, and Maria Carolina Duran Rojas
Geosci. Model Dev., 16, 2261–2276, https://doi.org/10.5194/gmd-16-2261-2023, https://doi.org/10.5194/gmd-16-2261-2023, 2023
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Plants have been found to respond differently to O3, but the variations in the sensitivities have rarely been explained nor fully implemented in large-scale assessment. This study proposes a new O3 damage scheme with leaf mass per area to unify varied sensitivities for all plant species. Our assessment reveals an O3-induced reduction of 4.8 % in global GPP, with the highest reduction of >10 % for cropland, suggesting an emerging risk of crop yield loss under the threat of O3 pollution.
Winslow D. Hansen, Adrianna Foster, Benjamin Gaglioti, Rupert Seidl, and Werner Rammer
Geosci. Model Dev., 16, 2011–2036, https://doi.org/10.5194/gmd-16-2011-2023, https://doi.org/10.5194/gmd-16-2011-2023, 2023
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Permafrost and the thick soil-surface organic layers that insulate permafrost are important controls of boreal forest dynamics and carbon cycling. However, both are rarely included in process-based vegetation models used to simulate future ecosystem trajectories. To address this challenge, we developed a computationally efficient permafrost and soil organic layer module that operates at fine spatial (1 ha) and temporal (daily) resolutions.
Heewon Jung, Hyun-Seob Song, and Christof Meile
Geosci. Model Dev., 16, 1683–1696, https://doi.org/10.5194/gmd-16-1683-2023, https://doi.org/10.5194/gmd-16-1683-2023, 2023
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Microbial activity responsible for many chemical transformations depends on environmental conditions. These can vary locally, e.g., between poorly connected pores in porous media. We present a modeling framework that resolves such small spatial scales explicitly, accounts for feedback between transport and biogeochemical conditions, and can integrate state-of-the-art representations of microbes in a computationally efficient way, making it broadly applicable in science and engineering use cases.
Arthur Guignabert, Quentin Ponette, Frédéric André, Christian Messier, Philippe Nolet, and Mathieu Jonard
Geosci. Model Dev., 16, 1661–1682, https://doi.org/10.5194/gmd-16-1661-2023, https://doi.org/10.5194/gmd-16-1661-2023, 2023
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Spatially explicit and process-based models are useful to test innovative forestry practices under changing and uncertain conditions. However, their larger use is often limited by the restricted range of species and stand structures they can reliably account for. We therefore calibrated and evaluated such a model, HETEROFOR, for 23 species across southern Québec. Our results showed that the model is robust and can predict accurately both individual tree growth and stand dynamics in this region.
Maureen Beaudor, Nicolas Vuichard, Juliette Lathière, Nikolaos Evangeliou, Martin Van Damme, Lieven Clarisse, and Didier Hauglustaine
Geosci. Model Dev., 16, 1053–1081, https://doi.org/10.5194/gmd-16-1053-2023, https://doi.org/10.5194/gmd-16-1053-2023, 2023
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Ammonia mainly comes from the agricultural sector, and its volatilization relies on environmental variables. Our approach aims at benefiting from an Earth system model framework to estimate it. By doing so, we represent a consistent spatial distribution of the emissions' response to environmental changes.
We greatly improved the seasonal cycle of emissions compared with previous work. In addition, our model includes natural soil emissions (that are rarely represented in modeling approaches).
Rui Ying, Fanny M. Monteiro, Jamie D. Wilson, and Daniela N. Schmidt
Geosci. Model Dev., 16, 813–832, https://doi.org/10.5194/gmd-16-813-2023, https://doi.org/10.5194/gmd-16-813-2023, 2023
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Planktic foraminifera are marine-calcifying zooplankton; their shells are widely used to measure past temperature and productivity. We developed ForamEcoGEnIE 2.0 to simulate the four subgroups of this organism. We found that the relative abundance distribution agrees with marine sediment core-top data and that carbon export and biomass are close to sediment trap and plankton net observations respectively. This model provides the opportunity to study foraminiferal ecology in any geological era.
Onur Kerimoglu, Markus Pahlow, Prima Anugerahanti, and Sherwood Lan Smith
Geosci. Model Dev., 16, 95–108, https://doi.org/10.5194/gmd-16-95-2023, https://doi.org/10.5194/gmd-16-95-2023, 2023
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In classical models that track the changes in the elemental composition of phytoplankton, additional state variables are required for each element resolved. In this study, we show how the behavior of such an explicit model can be approximated using an
instantaneous acclimationapproach, in which the elemental composition of the phytoplankton is assumed to adjust to an optimal value instantaneously. Through rigorous tests, we evaluate the consistency of this scheme.
Yuan Zhang, Devaraju Narayanappa, Philippe Ciais, Wei Li, Daniel Goll, Nicolas Vuichard, Martin G. De Kauwe, Laurent Li, and Fabienne Maignan
Geosci. Model Dev., 15, 9111–9125, https://doi.org/10.5194/gmd-15-9111-2022, https://doi.org/10.5194/gmd-15-9111-2022, 2022
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There are a few studies to examine if current models correctly represented the complex processes of transpiration. Here, we use a coefficient Ω, which indicates if transpiration is mainly controlled by vegetation processes or by turbulence, to evaluate the ORCHIDEE model. We found a good performance of ORCHIDEE, but due to compensation of biases in different processes, we also identified how different factors control Ω and where the model is wrong. Our method is generic to evaluate other models.
Thomas Neumann, Hagen Radtke, Bronwyn Cahill, Martin Schmidt, and Gregor Rehder
Geosci. Model Dev., 15, 8473–8540, https://doi.org/10.5194/gmd-15-8473-2022, https://doi.org/10.5194/gmd-15-8473-2022, 2022
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Marine ecosystem models are usually constrained by the elements nitrogen and phosphorus and consider carbon in organic matter in a fixed ratio. Recent observations show a substantial deviation from the simulated carbon cycle variables. In this study, we present a marine ecosystem model for the Baltic Sea which allows for a flexible uptake ratio for carbon, nitrogen, and phosphorus. With this extension, the model reflects much more reasonable variables of the marine carbon cycle.
Arsène Druel, Simon Munier, Anthony Mucia, Clément Albergel, and Jean-Christophe Calvet
Geosci. Model Dev., 15, 8453–8471, https://doi.org/10.5194/gmd-15-8453-2022, https://doi.org/10.5194/gmd-15-8453-2022, 2022
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Crop phenology and irrigation is implemented into a land surface model able to work at a global scale. A case study is presented over Nebraska (USA). Simulations with and without the new scheme are compared to different satellite-based observations. The model is able to produce a realistic yearly irrigation water amount. The irrigation scheme improves the simulated leaf area index, gross primary productivity, evapotransipiration, and land surface temperature.
Thomas Wutzler, Lin Yu, Marion Schrumpf, and Sönke Zaehle
Geosci. Model Dev., 15, 8377–8393, https://doi.org/10.5194/gmd-15-8377-2022, https://doi.org/10.5194/gmd-15-8377-2022, 2022
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Soil microbes process soil organic matter and affect carbon storage and plant nutrition at the ecosystem scale. We hypothesized that decadal dynamics is constrained by the ratios of elements in litter inputs, microbes, and matter and that microbial community optimizes growth. This allowed the SESAM model to descibe decadal-term carbon sequestration in soils and other biogeochemical processes explicitly accounting for microbial processes but without its problematic fine-scale parameterization.
Ensheng Weng, Igor Aleinov, Ram Singh, Michael J. Puma, Sonali S. McDermid, Nancy Y. Kiang, Maxwell Kelley, Kevin Wilcox, Ray Dybzinski, Caroline E. Farrior, Stephen W. Pacala, and Benjamin I. Cook
Geosci. Model Dev., 15, 8153–8180, https://doi.org/10.5194/gmd-15-8153-2022, https://doi.org/10.5194/gmd-15-8153-2022, 2022
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We develop a demographic vegetation model to improve the representation of terrestrial vegetation dynamics and ecosystem biogeochemical cycles in the Goddard Institute for Space Studies ModelE. The individual-based competition for light and soil resources makes the modeling of eco-evolutionary optimality possible. This model will enable ModelE to simulate long-term biogeophysical and biogeochemical feedbacks between the climate system and land ecosystems at decadal to centurial temporal scales.
Yitong Yao, Emilie Joetzjer, Philippe Ciais, Nicolas Viovy, Fabio Cresto Aleina, Jerome Chave, Lawren Sack, Megan Bartlett, Patrick Meir, Rosie Fisher, and Sebastiaan Luyssaert
Geosci. Model Dev., 15, 7809–7833, https://doi.org/10.5194/gmd-15-7809-2022, https://doi.org/10.5194/gmd-15-7809-2022, 2022
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To facilitate more mechanistic modeling of drought effects on forest dynamics, our study implements a hydraulic module to simulate the vertical water flow, change in water storage and percentage loss of stem conductance (PLC). With the relationship between PLC and tree mortality, our model can successfully reproduce the large biomass drop observed under throughfall exclusion. Our hydraulic module provides promising avenues benefiting the prediction for mortality under future drought events.
Arthur Nicolaus Fendrich, Philippe Ciais, Emanuele Lugato, Marco Carozzi, Bertrand Guenet, Pasquale Borrelli, Victoria Naipal, Matthew McGrath, Philippe Martin, and Panos Panagos
Geosci. Model Dev., 15, 7835–7857, https://doi.org/10.5194/gmd-15-7835-2022, https://doi.org/10.5194/gmd-15-7835-2022, 2022
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Currently, spatially explicit models for soil carbon stock can simulate the impacts of several changes. However, they do not incorporate the erosion, lateral transport, and deposition (ETD) of soil material. The present work developed ETD formulation, illustrated model calibration and validation for Europe, and presented the results for a depositional site. We expect that our work advances ETD models' description and facilitates their reproduction and incorporation in land surface models.
Kazumi Ozaki, Devon B. Cole, Christopher T. Reinhard, and Eiichi Tajika
Geosci. Model Dev., 15, 7593–7639, https://doi.org/10.5194/gmd-15-7593-2022, https://doi.org/10.5194/gmd-15-7593-2022, 2022
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A new biogeochemical model (CANOPS-GRB v1.0) for assessing the redox stability and dynamics of the ocean–atmosphere system on geologic timescales has been developed. In this paper, we present a full description of the model and its performance. CANOPS-GRB is a useful tool for understanding the factors regulating atmospheric O2 level and has the potential to greatly refine our current understanding of Earth's oxygenation history.
Félicien Meunier, Wim Verbruggen, Hans Verbeeck, and Marc Peaucelle
Geosci. Model Dev., 15, 7573–7591, https://doi.org/10.5194/gmd-15-7573-2022, https://doi.org/10.5194/gmd-15-7573-2022, 2022
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Drought stress occurs in plants when water supply (i.e. root water uptake) is lower than the water demand (i.e. atmospheric demand). It is strongly related to soil properties and expected to increase in intensity and frequency in the tropics due to climate change. In this study, we show that contrary to the expectations, state-of-the-art terrestrial biosphere models are mostly insensitive to soil texture and hence probably inadequate to reproduce in silico the plant water status in drying soils.
Stanley I. Nmor, Eric Viollier, Lucie Pastor, Bruno Lansard, Christophe Rabouille, and Karline Soetaert
Geosci. Model Dev., 15, 7325–7351, https://doi.org/10.5194/gmd-15-7325-2022, https://doi.org/10.5194/gmd-15-7325-2022, 2022
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The coastal marine environment serves as a transition zone in the land–ocean continuum and is susceptible to episodic phenomena such as flash floods, which cause massive organic matter deposition. Here, we present a model of sediment early diagenesis that explicitly describes this type of deposition while also incorporating unique flood deposit characteristics. This model can be used to investigate the temporal evolution of marine sediments following abrupt changes in environmental conditions.
Shanlin Tong, Weiguang Wang, Jie Chen, Chong-Yu Xu, Hisashi Sato, and Guoqing Wang
Geosci. Model Dev., 15, 7075–7098, https://doi.org/10.5194/gmd-15-7075-2022, https://doi.org/10.5194/gmd-15-7075-2022, 2022
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Plant carbon storage potential is central to moderate atmospheric CO2 concentration buildup and mitigation of climate change. There is an ongoing debate about the main driver of carbon storage. To reconcile this discrepancy, we use SEIB-DGVM to investigate the trend and response mechanism of carbon stock fractions among water limitation regions. Results show that the impact of CO2 and temperature on carbon stock depends on water limitation, offering a new perspective on carbon–water coupling.
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