Articles | Volume 6, issue 5
https://doi.org/10.5194/gmd-6-1517-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/gmd-6-1517-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Model description paper
| 
12 Sep 2013
Model description paper |
| 12 Sep 2013
GAPPARD: a computationally efficient method of approximating gap-scale disturbance in vegetation models
M. Scherstjanoi
Dynamic Macroecology, Landscape Dynamics, Swiss Federal Research Institute WSL, Zürcherstr. 111, 8903 Birmensdorf, Switzerland
J. O. Kaplan
ARVE Group, Swiss Federal Institute of Technology EPFL, Institute of Environmental Engineering, 1015 Lausanne, Switzerland
E. Thürig
Resource Analysis, Swiss Federal Research Institute WSL, Zürcherstr. 111, 8903 Birmensdorf, Switzerland
H. Lischke
Dynamic Macroecology, Landscape Dynamics, Swiss Federal Research Institute WSL, Zürcherstr. 111, 8903 Birmensdorf, Switzerland
Related authors
M. Scherstjanoi, J. O. Kaplan, and H. Lischke
Geosci. Model Dev., 7, 1543–1571, https://doi.org/10.5194/gmd-7-1543-2014, https://doi.org/10.5194/gmd-7-1543-2014, 2014
Katja Frieler, Stefan Lange, Jacob Schewe, Matthias Mengel, Simon Treu, Christian Otto, Jan Volkholz, Christopher P. O. Reyer, Stefanie Heinicke, Colin Jones, Julia L. Blanchard, Cheryl S. Harrison, Colleen M. Petrik, Tyler D. Eddy, Kelly Ortega-Cisneros, Camilla Novaglio, Ryan Heneghan, Derek P. Tittensor, Olivier Maury, Matthias Büchner, Thomas Vogt, Dánnell Quesada Chacón, Kerry Emanuel, Chia-Ying Lee, Suzana J. Camargo, Jonas Jägermeyr, Sam Rabin, Jochen Klar, Iliusi D. Vega del Valle, Lisa Novak, Inga J. Sauer, Gitta Lasslop, Sarah Chadburn, Eleanor Burke, Angela Gallego-Sala, Noah Smith, Jinfeng Chang, Stijn Hantson, Chantelle Burton, Anne Gädeke, Fang Li, Simon N. Gosling, Hannes Müller Schmied, Fred Hattermann, Thomas Hickler, Rafael Marcé, Don Pierson, Wim Thiery, Daniel Mercado-Bettín, Robert Ladwig, Ana Isabel Ayala-Zamora, Matthew Forrest, Michel Bechtold, Robert Reinecke, Inge de Graaf, Jed O. Kaplan, Alexander Koch, and Matthieu Lengaigne
EGUsphere, https://doi.org/10.5194/egusphere-2025-2103, https://doi.org/10.5194/egusphere-2025-2103, 2025
This preprint is open for discussion and under review for Geoscientific Model Development (GMD).
Short summary
Short summary
This paper describes the experiments and data sets necessary to run historic and future impact projections, and the underlying assumptions of future climate change as defined by the 3rd round of the ISIMIP Project (Inter-sectoral Impactmodel Intercomparison Project, isimip.org). ISIMIP provides a framework for cross-sectorally consistent climate impact simulations to contribute to a comprehensive and consistent picture of the world under different climate-change scenarios.
Ram Singh, Alexander Koch, Allegra N. LeGrande, Kostas Tsigaridis, Riovie D. Ramos, Francis Ludlow, Igor Aleinov, Reto Ruedy, and Jed O. Kaplan
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-219, https://doi.org/10.5194/gmd-2024-219, 2024
Preprint under review for GMD
Short summary
Short summary
This study presents and demonstrates an experimental framework for asynchronous land-atmosphere coupling using the NASA GISS ModelE and LPJ-LMfire models for the 2.5ka period. This framework addresses the limitation of NASA ModelE, which does not have a fully dynamic vegetation model component. It also shows the role of model performance metrics, such as model bias and variability, and the simulated climate is evaluated against the multi-proxy paleoclimate reconstructions for the 2.5ka climate.
Claudia Guidi, Sia Gosheva-Oney, Markus Didion, Roman Flury, Lorenz Walthert, Stephan Zimmermann, Brian J. Oney, Pascal A. Niklaus, Esther Thürig, Toni Viskari, Jari Liski, and Frank Hagedorn
EGUsphere, https://doi.org/10.5194/egusphere-2024-3788, https://doi.org/10.5194/egusphere-2024-3788, 2024
Short summary
Short summary
Predicting soil organic carbon (SOC) stocks in forests is crucial for assessing C balance, yet drivers of SOC stocks remain uncertain at large scales. Across a broad environmental gradient in Switzerland, we compared measured SOC stocks with those modelled by Yasso20, commonly used for GHG budgets. Our results show that soil mineral properties and climate are main controls of SOC stocks, indicating that better accounting of these processes will advance accuracy of SOC stock predictions.
Basil A. S. Davis, Marc Fasel, Jed O. Kaplan, Emmanuele Russo, and Ariane Burke
Clim. Past, 20, 1939–1988, https://doi.org/10.5194/cp-20-1939-2024, https://doi.org/10.5194/cp-20-1939-2024, 2024
Short summary
Short summary
During the last ice age (21 000 yr BP) in Europe, the composition and extent of forest and its associated climate remain unclear, with models indicating more forest north of the Alps and a warmer and somewhat wetter climate than suggested by the data. A new compilation of pollen records with improved dating suggests greater agreement with model climates but still suggests models overestimate forest cover, especially in the west.
Jed O. Kaplan and Katie Hong-Kiu Lau
Earth Syst. Sci. Data, 14, 5665–5670, https://doi.org/10.5194/essd-14-5665-2022, https://doi.org/10.5194/essd-14-5665-2022, 2022
Short summary
Short summary
Global lightning strokes are recorded continuously by a network of ground-based stations. We consolidated these point observations into a map form and provide these as electronic datasets for research purposes. Here we extend our dataset to include lightning observations from 2021.
Jed O. Kaplan and Katie Hong-Kiu Lau
Earth Syst. Sci. Data, 13, 3219–3237, https://doi.org/10.5194/essd-13-3219-2021, https://doi.org/10.5194/essd-13-3219-2021, 2021
Short summary
Short summary
Lightning is an important atmospheric phenomenon and natural hazard, but few long-term data are freely available on lightning stroke location, timing, and power. Here, we present a new, open-access dataset of lightning strokes covering 2010–2020, based on a network of low-frequency radio detectors. The dataset is comprised of GIS maps and is intended for researchers, government, industry, and anyone for whom knowing when and where lightning is likely to strike is useful information.
Patricio Velasquez, Jed O. Kaplan, Martina Messmer, Patrick Ludwig, and Christoph C. Raible
Clim. Past, 17, 1161–1180, https://doi.org/10.5194/cp-17-1161-2021, https://doi.org/10.5194/cp-17-1161-2021, 2021
Short summary
Short summary
This study assesses the importance of resolution and land–atmosphere feedbacks for European climate. We performed an asynchronously coupled experiment that combined a global climate model (~ 100 km), a regional climate model (18 km), and a dynamic vegetation model (18 km). Modelled climate and land cover agree reasonably well with independent reconstructions based on pollen and other paleoenvironmental proxies. The regional climate is significantly influenced by land cover.
Yang Li, Loretta J. Mickley, and Jed O. Kaplan
Atmos. Chem. Phys., 21, 57–68, https://doi.org/10.5194/acp-21-57-2021, https://doi.org/10.5194/acp-21-57-2021, 2021
Short summary
Short summary
Climate models predict a shift toward warmer, drier environments in southwestern North America. Under future climate, the two main drivers of dust trends play opposing roles: (1) CO2 fertilization enhances vegetation and, in turn, decreases dust, and (2) increasing land use enhances dust emissions from northern Mexico. In the worst-case scenario, elevated dust concentrations spread widely over the domain by 2100 in spring, suggesting a large climate penalty on air quality and human health.
George C. Hurtt, Louise Chini, Ritvik Sahajpal, Steve Frolking, Benjamin L. Bodirsky, Katherine Calvin, Jonathan C. Doelman, Justin Fisk, Shinichiro Fujimori, Kees Klein Goldewijk, Tomoko Hasegawa, Peter Havlik, Andreas Heinimann, Florian Humpenöder, Johan Jungclaus, Jed O. Kaplan, Jennifer Kennedy, Tamás Krisztin, David Lawrence, Peter Lawrence, Lei Ma, Ole Mertz, Julia Pongratz, Alexander Popp, Benjamin Poulter, Keywan Riahi, Elena Shevliakova, Elke Stehfest, Peter Thornton, Francesco N. Tubiello, Detlef P. van Vuuren, and Xin Zhang
Geosci. Model Dev., 13, 5425–5464, https://doi.org/10.5194/gmd-13-5425-2020, https://doi.org/10.5194/gmd-13-5425-2020, 2020
Short summary
Short summary
To estimate the effects of human land use activities on the carbon–climate system, a new set of global gridded land use forcing datasets was developed to link historical land use data to eight future scenarios in a standard format required by climate models. This new generation of land use harmonization (LUH2) includes updated inputs, higher spatial resolution, more detailed land use transitions, and the addition of important agricultural management layers; it will be used for CMIP6 simulations.
Matthew J. Rowlinson, Alexandru Rap, Douglas S. Hamilton, Richard J. Pope, Stijn Hantson, Steve R. Arnold, Jed O. Kaplan, Almut Arneth, Martyn P. Chipperfield, Piers M. Forster, and Lars Nieradzik
Atmos. Chem. Phys., 20, 10937–10951, https://doi.org/10.5194/acp-20-10937-2020, https://doi.org/10.5194/acp-20-10937-2020, 2020
Short summary
Short summary
Tropospheric ozone is an important greenhouse gas which contributes to anthropogenic climate change; however, the effect of human emissions is uncertain because pre-industrial ozone concentrations are not well understood. We use revised inventories of pre-industrial natural emissions to estimate the human contribution to changes in tropospheric ozone. We find that tropospheric ozone radiative forcing is up to 34 % lower when using improved pre-industrial biomass burning and vegetation emissions.
Yang Li, Loretta J. Mickley, Pengfei Liu, and Jed O. Kaplan
Atmos. Chem. Phys., 20, 8827–8838, https://doi.org/10.5194/acp-20-8827-2020, https://doi.org/10.5194/acp-20-8827-2020, 2020
Short summary
Short summary
Using a coupled vegetation–fire–climate modeling framework, we show a northward shift in forests and increased lightning fire activity in northern US states, including Idaho, Montana, and Wyoming. Our findings suggest a large climate penalty on ecosystem, air quality, visibility, and human health in a region valued for its national forests and parks. The fine-scale smoke PM predictions provided in this study should prove useful to human health and environmental assessments.
Sandy P. Harrison, Marie-José Gaillard, Benjamin D. Stocker, Marc Vander Linden, Kees Klein Goldewijk, Oliver Boles, Pascale Braconnot, Andria Dawson, Etienne Fluet-Chouinard, Jed O. Kaplan, Thomas Kastner, Francesco S. R. Pausata, Erick Robinson, Nicki J. Whitehouse, Marco Madella, and Kathleen D. Morrison
Geosci. Model Dev., 13, 805–824, https://doi.org/10.5194/gmd-13-805-2020, https://doi.org/10.5194/gmd-13-805-2020, 2020
Short summary
Short summary
The Past Global Changes LandCover6k initiative will use archaeological records to refine scenarios of land use and land cover change through the Holocene to reduce the uncertainties about the impacts of human-induced changes before widespread industrialization. We describe how archaeological data are used to map land use change and how the maps can be evaluated using independent palaeoenvironmental data. We propose simulations to test land use and land cover change impacts on past climates.
Pierre Friedlingstein, Matthew W. Jones, Michael O'Sullivan, Robbie M. Andrew, Judith Hauck, Glen P. Peters, Wouter Peters, Julia Pongratz, Stephen Sitch, Corinne Le Quéré, Dorothee C. E. Bakker, Josep G. Canadell, Philippe Ciais, Robert B. Jackson, Peter Anthoni, Leticia Barbero, Ana Bastos, Vladislav Bastrikov, Meike Becker, Laurent Bopp, Erik Buitenhuis, Naveen Chandra, Frédéric Chevallier, Louise P. Chini, Kim I. Currie, Richard A. Feely, Marion Gehlen, Dennis Gilfillan, Thanos Gkritzalis, Daniel S. Goll, Nicolas Gruber, Sören Gutekunst, Ian Harris, Vanessa Haverd, Richard A. Houghton, George Hurtt, Tatiana Ilyina, Atul K. Jain, Emilie Joetzjer, Jed O. Kaplan, Etsushi Kato, Kees Klein Goldewijk, Jan Ivar Korsbakken, Peter Landschützer, Siv K. Lauvset, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Danica Lombardozzi, Gregg Marland, Patrick C. McGuire, Joe R. Melton, Nicolas Metzl, David R. Munro, Julia E. M. S. Nabel, Shin-Ichiro Nakaoka, Craig Neill, Abdirahman M. Omar, Tsuneo Ono, Anna Peregon, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Laure Resplandy, Eddy Robertson, Christian Rödenbeck, Roland Séférian, Jörg Schwinger, Naomi Smith, Pieter P. Tans, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Guido R. van der Werf, Andrew J. Wiltshire, and Sönke Zaehle
Earth Syst. Sci. Data, 11, 1783–1838, https://doi.org/10.5194/essd-11-1783-2019, https://doi.org/10.5194/essd-11-1783-2019, 2019
Short summary
Short summary
The Global Carbon Budget 2019 describes the data sets and methodology used to quantify the emissions of carbon dioxide and their partitioning among the atmosphere, land, and ocean. These living data are updated every year to provide the highest transparency and traceability in the reporting of CO2, the key driver of climate change.
Anina Gilgen, Stiig Wilkenskjeld, Jed O. Kaplan, Thomas Kühn, and Ulrike Lohmann
Clim. Past, 15, 1885–1911, https://doi.org/10.5194/cp-15-1885-2019, https://doi.org/10.5194/cp-15-1885-2019, 2019
Short summary
Short summary
Using the global aerosol–climate model ECHAM-HAM-SALSA, the effect of humans on European climate in the Roman Empire was quantified. Both land use and novel estimates of anthropogenic aerosol emissions were considered. We conducted simulations with fixed sea-surface temperatures to gain a first impression about the anthropogenic impact. While land use effects induced a regional warming for one of the reconstructions, aerosol emissions led to a cooling associated with aerosol–cloud interactions.
Emeline Chaste, Martin P. Girardin, Jed O. Kaplan, Jeanne Portier, Yves Bergeron, and Christelle Hély
Biogeosciences, 15, 1273–1292, https://doi.org/10.5194/bg-15-1273-2018, https://doi.org/10.5194/bg-15-1273-2018, 2018
Short summary
Short summary
A vegetation model was used to reconstruct fire activity from 1901 to 2012 in relation to changes in lightning ignition, climate, and vegetation in eastern Canada's boreal forest. The model correctly simulated the history of fire activity. The results showed that fire activity is ignition limited but is also greatly affected by both climate and vegetation. This research aims to develop a vegetation model that could be used to predict the future impacts of climate changes on fire activity.
Johann H. Jungclaus, Edouard Bard, Mélanie Baroni, Pascale Braconnot, Jian Cao, Louise P. Chini, Tania Egorova, Michael Evans, J. Fidel González-Rouco, Hugues Goosse, George C. Hurtt, Fortunat Joos, Jed O. Kaplan, Myriam Khodri, Kees Klein Goldewijk, Natalie Krivova, Allegra N. LeGrande, Stephan J. Lorenz, Jürg Luterbacher, Wenmin Man, Amanda C. Maycock, Malte Meinshausen, Anders Moberg, Raimund Muscheler, Christoph Nehrbass-Ahles, Bette I. Otto-Bliesner, Steven J. Phipps, Julia Pongratz, Eugene Rozanov, Gavin A. Schmidt, Hauke Schmidt, Werner Schmutz, Andrew Schurer, Alexander I. Shapiro, Michael Sigl, Jason E. Smerdon, Sami K. Solanki, Claudia Timmreck, Matthew Toohey, Ilya G. Usoskin, Sebastian Wagner, Chi-Ju Wu, Kok Leng Yeo, Davide Zanchettin, Qiong Zhang, and Eduardo Zorita
Geosci. Model Dev., 10, 4005–4033, https://doi.org/10.5194/gmd-10-4005-2017, https://doi.org/10.5194/gmd-10-4005-2017, 2017
Short summary
Short summary
Climate model simulations covering the last millennium provide context for the evolution of the modern climate and for the expected changes during the coming centuries. They can help identify plausible mechanisms underlying palaeoclimatic reconstructions. Here, we describe the forcing boundary conditions and the experimental protocol for simulations covering the pre-industrial millennium. We describe the PMIP4 past1000 simulations as contributions to CMIP6 and additional sensitivity experiments.
Philipp S. Sommer and Jed O. Kaplan
Geosci. Model Dev., 10, 3771–3791, https://doi.org/10.5194/gmd-10-3771-2017, https://doi.org/10.5194/gmd-10-3771-2017, 2017
Short summary
Short summary
We present GWGEN, a computer program for converting monthly climate data into estimates of daily weather, using statistical methods. The GWGEN weather generator program was developed using a global database of more than 5 million observations of daily weather, and it simulates daily values of minimum and maximum temperature, precipitation, cloud cover, and wind speed. GWGEN may be used in a range of applications, for example, in global vegetation, crop, soil erosion, or hydrological models.
Sam S. Rabin, Joe R. Melton, Gitta Lasslop, Dominique Bachelet, Matthew Forrest, Stijn Hantson, Jed O. Kaplan, Fang Li, Stéphane Mangeon, Daniel S. Ward, Chao Yue, Vivek K. Arora, Thomas Hickler, Silvia Kloster, Wolfgang Knorr, Lars Nieradzik, Allan Spessa, Gerd A. Folberth, Tim Sheehan, Apostolos Voulgarakis, Douglas I. Kelley, I. Colin Prentice, Stephen Sitch, Sandy Harrison, and Almut Arneth
Geosci. Model Dev., 10, 1175–1197, https://doi.org/10.5194/gmd-10-1175-2017, https://doi.org/10.5194/gmd-10-1175-2017, 2017
Short summary
Short summary
Global vegetation models are important tools for understanding how the Earth system will change in the future, and fire is a critical process to include. A number of different methods have been developed to represent vegetation burning. This paper describes the protocol for the first systematic comparison of global fire models, which will allow the community to explore various drivers and evaluate what mechanisms are important for improving performance. It also includes equations for all models.
Stijn Hantson, Almut Arneth, Sandy P. Harrison, Douglas I. Kelley, I. Colin Prentice, Sam S. Rabin, Sally Archibald, Florent Mouillot, Steve R. Arnold, Paulo Artaxo, Dominique Bachelet, Philippe Ciais, Matthew Forrest, Pierre Friedlingstein, Thomas Hickler, Jed O. Kaplan, Silvia Kloster, Wolfgang Knorr, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Andrea Meyn, Stephen Sitch, Allan Spessa, Guido R. van der Werf, Apostolos Voulgarakis, and Chao Yue
Biogeosciences, 13, 3359–3375, https://doi.org/10.5194/bg-13-3359-2016, https://doi.org/10.5194/bg-13-3359-2016, 2016
Short summary
Short summary
Our ability to predict the magnitude and geographic pattern of past and future fire impacts rests on our ability to model fire regimes. A large variety of models exist, and it is unclear which type of model or degree of complexity is required to model fire adequately at regional to global scales. In this paper we summarize the current state of the art in fire-regime modelling and model evaluation, and outline what lessons may be learned from the Fire Model Intercomparison Project – FireMIP.
M. Clare Smith, Joy S. Singarayer, Paul J. Valdes, Jed O. Kaplan, and Nicholas P. Branch
Clim. Past, 12, 923–941, https://doi.org/10.5194/cp-12-923-2016, https://doi.org/10.5194/cp-12-923-2016, 2016
Short summary
Short summary
We used climate modelling to estimate the biogeophysical impacts of agriculture on the climate over the last 8000 years of the Holocene. Our results show statistically significant surface temperature changes (mainly cooling) from as early as 7000 BP in the JJA season and throughout the entire annual cycle by 2–3000 BP. The changes were greatest in the areas of land use change but were also seen in other areas. Precipitation was also affected, particularly in Europe, India, and the ITCZ region.
Zhen Zhang, Niklaus E. Zimmermann, Jed O. Kaplan, and Benjamin Poulter
Biogeosciences, 13, 1387–1408, https://doi.org/10.5194/bg-13-1387-2016, https://doi.org/10.5194/bg-13-1387-2016, 2016
Short summary
Short summary
This study investigates improvements and uncertainties associated with estimating global inundated area and wetland CH4 emissions using TOPMODEL. Different topographic information and catchment aggregation schemes are evaluated against seasonal and permanently inundated wetland observations. Reducing uncertainty in prognostic wetland dynamics modeling must take into account forcing data as well as topographic scaling schemes.
M. J. McGrath, S. Luyssaert, P. Meyfroidt, J. O. Kaplan, M. Bürgi, Y. Chen, K. Erb, U. Gimmi, D. McInerney, K. Naudts, J. Otto, F. Pasztor, J. Ryder, M.-J. Schelhaas, and A. Valade
Biogeosciences, 12, 4291–4316, https://doi.org/10.5194/bg-12-4291-2015, https://doi.org/10.5194/bg-12-4291-2015, 2015
Short summary
Short summary
Studying century-scale ecological processes and their legacy effects requires taking forest management into account. In this study we produce spatially and temporally explicit maps of European forest management from 1600 to 2010. The most important changes between 1600 and 2010 are an increase of 593 000km2 in conifers at the expense of deciduous forest, a 612 000km2 decrease in unmanaged forest, a 152 000km2 decrease in coppice management and a 818 000km2 increase in high stand management.
P. Achakulwisut, L. J. Mickley, L. T. Murray, A. P. K. Tai, J. O. Kaplan, and B. Alexander
Atmos. Chem. Phys., 15, 7977–7998, https://doi.org/10.5194/acp-15-7977-2015, https://doi.org/10.5194/acp-15-7977-2015, 2015
Short summary
Short summary
The atmosphere’s oxidative capacity determines the lifetime of many trace gases important to climate, chemistry, and human health. Yet uncertainties remain about its past variations, its controlling factors, and the radiative forcing of short-lived species it influences. To reduce these uncertainties, we must better quantify the natural emissions and chemical reaction mechanisms of organic compounds in the atmosphere, which play a role in governing the oxidative capacity.
T. J. Bohn, J. R. Melton, A. Ito, T. Kleinen, R. Spahni, B. D. Stocker, B. Zhang, X. Zhu, R. Schroeder, M. V. Glagolev, S. Maksyutov, V. Brovkin, G. Chen, S. N. Denisov, A. V. Eliseev, A. Gallego-Sala, K. C. McDonald, M.A. Rawlins, W. J. Riley, Z. M. Subin, H. Tian, Q. Zhuang, and J. O. Kaplan
Biogeosciences, 12, 3321–3349, https://doi.org/10.5194/bg-12-3321-2015, https://doi.org/10.5194/bg-12-3321-2015, 2015
Short summary
Short summary
We evaluated 21 forward models and 5 inversions over western Siberia in terms of CH4 emissions and simulated wetland areas and compared these results to an intensive in situ CH4 flux data set, several wetland maps, and two satellite inundation products. In addition to assembling a definitive collection of methane emissions estimates for the region, we were able to identify the types of wetland maps and model features necessary for accurate simulations of high-latitude wetlands.
J. Schwaab, M. Bavay, E. Davin, F. Hagedorn, F. Hüsler, M. Lehning, M. Schneebeli, E. Thürig, and P. Bebi
Biogeosciences, 12, 467–487, https://doi.org/10.5194/bg-12-467-2015, https://doi.org/10.5194/bg-12-467-2015, 2015
A. Mauri, B. A. S. Davis, P. M. Collins, and J. O. Kaplan
Clim. Past, 10, 1925–1938, https://doi.org/10.5194/cp-10-1925-2014, https://doi.org/10.5194/cp-10-1925-2014, 2014
M. Scherstjanoi, J. O. Kaplan, and H. Lischke
Geosci. Model Dev., 7, 1543–1571, https://doi.org/10.5194/gmd-7-1543-2014, https://doi.org/10.5194/gmd-7-1543-2014, 2014
L. T. Murray, L. J. Mickley, J. O. Kaplan, E. D. Sofen, M. Pfeiffer, and B. Alexander
Atmos. Chem. Phys., 14, 3589–3622, https://doi.org/10.5194/acp-14-3589-2014, https://doi.org/10.5194/acp-14-3589-2014, 2014
G. Strandberg, E. Kjellström, A. Poska, S. Wagner, M.-J. Gaillard, A.-K. Trondman, A. Mauri, B. A. S. Davis, J. O. Kaplan, H. J. B. Birks, A. E. Bjune, R. Fyfe, T. Giesecke, L. Kalnina, M. Kangur, W. O. van der Knaap, U. Kokfelt, P. Kuneš, M. Lata\l owa, L. Marquer, F. Mazier, A. B. Nielsen, B. Smith, H. Seppä, and S. Sugita
Clim. Past, 10, 661–680, https://doi.org/10.5194/cp-10-661-2014, https://doi.org/10.5194/cp-10-661-2014, 2014
T. Hoffmann, S. M. Mudd, K. van Oost, G. Verstraeten, G. Erkens, A. Lang, H. Middelkoop, J. Boyle, J. O. Kaplan, J. Willenbring, and R. Aalto
Earth Surf. Dynam., 1, 45–52, https://doi.org/10.5194/esurf-1-45-2013, https://doi.org/10.5194/esurf-1-45-2013, 2013
V. Beck, C. Gerbig, T. Koch, M. M. Bela, K. M. Longo, S. R. Freitas, J. O. Kaplan, C. Prigent, P. Bergamaschi, and M. Heimann
Atmos. Chem. Phys., 13, 7961–7982, https://doi.org/10.5194/acp-13-7961-2013, https://doi.org/10.5194/acp-13-7961-2013, 2013
M. Pfeiffer, A. Spessa, and J. O. Kaplan
Geosci. Model Dev., 6, 643–685, https://doi.org/10.5194/gmd-6-643-2013, https://doi.org/10.5194/gmd-6-643-2013, 2013
R. Wania, J. R. Melton, E. L. Hodson, B. Poulter, B. Ringeval, R. Spahni, T. Bohn, C. A. Avis, G. Chen, A. V. Eliseev, P. O. Hopcroft, W. J. Riley, Z. M. Subin, H. Tian, P. M. van Bodegom, T. Kleinen, Z. C. Yu, J. S. Singarayer, S. Zürcher, D. P. Lettenmaier, D. J. Beerling, S. N. Denisov, C. Prigent, F. Papa, and J. O. Kaplan
Geosci. Model Dev., 6, 617–641, https://doi.org/10.5194/gmd-6-617-2013, https://doi.org/10.5194/gmd-6-617-2013, 2013
J. R. Melton, R. Wania, E. L. Hodson, B. Poulter, B. Ringeval, R. Spahni, T. Bohn, C. A. Avis, D. J. Beerling, G. Chen, A. V. Eliseev, S. N. Denisov, P. O. Hopcroft, D. P. Lettenmaier, W. J. Riley, J. S. Singarayer, Z. M. Subin, H. Tian, S. Zürcher, V. Brovkin, P. M. van Bodegom, T. Kleinen, Z. C. Yu, and J. O. Kaplan
Biogeosciences, 10, 753–788, https://doi.org/10.5194/bg-10-753-2013, https://doi.org/10.5194/bg-10-753-2013, 2013
Related subject area
Biogeosciences
Alquimia v1.0: a generic interface to biogeochemical codes – a tool for interoperable development, prototyping and benchmarking for multiphysics simulators
Soil nitrous oxide emissions from global land ecosystems and their drivers within the LPJ-GUESS model (v4.1)
Parameterization toolbox for a physical–biogeochemical model compatible with FABM – a case study: the coupled 1D GOTM–ECOSMO E2E for the Sylt–Rømø Bight, North Sea
H2MV (v1.0): global physically constrained deep learning water cycle model with vegetation
NN-TOC v1: global prediction of total organic carbon in marine sediments using deep neural networks
China Wildfire Emission Dataset (ChinaWED v1) for the period 2012–2022
Process-based modeling of solar-induced chlorophyll fluorescence with VISIT-SIF version 1.0
Including the phosphorus cycle into the LPJ-GUESS dynamic global vegetation model (v4.1, r10994) – global patterns and temporal trends of N and P primary production limitation
A comprehensive land-surface vegetation model for multi-stream data assimilation, D&B v1.0
Sources of uncertainty in the SPITFIRE global fire model: development of LPJmL-SPITFIRE1.9 and directions for future improvements
The unicellular NUM v.0.91: a trait-based plankton model evaluated in two contrasting biogeographic provinces
FESOM2.1-REcoM3-MEDUSA2: an ocean–sea ice–biogeochemistry model coupled to a sediment model
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
Emulating grid-based forest carbon dynamics using machine learning: an LPJ-GUESS v4.1.1 application
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
pyVPRM: A next-generation Vegetation Photosynthesis and Respiration Model for the post-MODIS era
Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Simulating the drought response of European tree species with the dynamic vegetation model LPJ-GUESS (v4.1, 97c552c5)
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
Development and assessment of the physical-biogeochemical ocean regional model in the Northwest Pacific: NPRT v1.0 (ROMS v3.9–TOPAZ v2.0)
TROLL 4.0: representing water and carbon fluxes, leaf phenology and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 1: Model description
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
TROLL 4.0: representing water and carbon fluxes, leaf phenology, and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 2: Model evaluation for two Amazonian sites
Estimation of above- and below-ground ecosystem parameters for the DVM-DOS-TEM v0.7.0 model using MADS v1.7.3: a synthetic case study
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
ML4Fire-XGBv1.0: Improving North American wildfire prediction by integrating a machine-learning fire model in a land surface model
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
A global behavioural model of human fire use and management: WHAM! v1.0
Terrestrial Ecosystem Model in R (TEMIR) version 1.0: simulating ecophysiological responses of vegetation to atmospheric chemical and meteorological changes
biospheremetrics v1.0.2: an R package to calculate two complementary terrestrial biosphere integrity indicators – human colonization of the biosphere (BioCol) and risk of ecosystem destabilization (EcoRisk)
Modeling boreal forest soil dynamics with the microbially explicit soil model MIMICS+ (v1.0)
Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1)
Implementing a dynamic representation of fire and harvest including subgrid-scale heterogeneity in the tile-based land surface model CLASSIC v1.45
Inferring the tree regeneration niche from inventory data using a dynamic forest model
Sergi Molins, Benjamin J. Andre, Jeffrey N. Johnson, Glenn E. Hammond, Benjamin N. Sulman, Konstantin Lipnikov, Marcus S. Day, James J. Beisman, Daniil Svyatsky, Hang Deng, Peter C. Lichtner, Carl I. Steefel, and J. David Moulton
Geosci. Model Dev., 18, 3241–3263, https://doi.org/10.5194/gmd-18-3241-2025, https://doi.org/10.5194/gmd-18-3241-2025, 2025
Short summary
Short summary
Developing scientific software and making sure it functions properly requires a significant effort. As we advance our understanding of natural systems, however, there is the need to develop yet more complex models and codes. In this work, we present a piece of software that facilitates this work, specifically with regard to reactive processes. Existing tried-and-true codes are made available via this new interface, freeing up resources to focus on the new aspects of the problems at hand.
Jianyong Ma, Almut Arneth, Benjamin Smith, Peter Anthoni, Xu-Ri, Peter Eliasson, David Wårlind, Martin Wittenbrink, and Stefan Olin
Geosci. Model Dev., 18, 3131–3155, https://doi.org/10.5194/gmd-18-3131-2025, https://doi.org/10.5194/gmd-18-3131-2025, 2025
Short summary
Short summary
Nitrous oxide (N2O) is a powerful greenhouse gas mainly released from natural and agricultural soils. This study examines how global soil N2O emissions changed from 1961 to 2020 and identifies key factors driving these changes using an ecological model. The findings highlight croplands as the largest source, with factors like fertilizer use and climate change enhancing emissions. Rising CO2 levels, however, can partially mitigate N2O emissions through increased plant nitrogen uptake.
Hoa Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
Geosci. Model Dev., 18, 2961–2982, https://doi.org/10.5194/gmd-18-2961-2025, https://doi.org/10.5194/gmd-18-2961-2025, 2025
Short summary
Short summary
Parameterization is key in modeling to reproduce observations well but is often done manually. This study presents a particle-swarm-optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, providing different insights into ecosystem dynamics, and (2) optimized model complexity.
Zavud Baghirov, Martin Jung, Markus Reichstein, Marco Körner, and Basil Kraft
Geosci. Model Dev., 18, 2921–2943, https://doi.org/10.5194/gmd-18-2921-2025, https://doi.org/10.5194/gmd-18-2921-2025, 2025
Short summary
Short summary
We use an innovative approach to studying the Earth's water cycle by integrating advanced machine learning techniques with a traditional water cycle model. Our model is designed to learn from observational data, with a particular emphasis on understanding the influence of vegetation on water movement. By closely aligning with real-world observations, our model offers new possibilities for enhancing our understanding of the water cycle and its interactions with vegetation.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
Geosci. Model Dev., 18, 2521–2544, https://doi.org/10.5194/gmd-18-2521-2025, https://doi.org/10.5194/gmd-18-2521-2025, 2025
Short summary
Short summary
Our research uses deep learning to predict organic carbon stocks in ocean sediments, which is crucial for understanding their role in the global carbon cycle. By analysing over 22 000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate that the top 10 cm of ocean sediments hold about 156 Pg of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev., 18, 2509–2520, https://doi.org/10.5194/gmd-18-2509-2025, https://doi.org/10.5194/gmd-18-2509-2025, 2025
Short summary
Short summary
The China Wildfire Emission Dataset (ChinaWED v1) estimated wildfire emissions in China during 2012–2022 as 78.13 Tg CO2, 279.47 Gg CH4, and 6.26 Gg N2O annually. Agricultural fires dominated emissions, while forest and grassland emissions decreased. Seasonal peaks occurred in late spring, with hotspots in northeast, southwest, and east China. The model emphasizes the importance of using localized emission factors and high-resolution fire estimates for accurate assessments.
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
Geosci. Model Dev., 18, 2329–2347, https://doi.org/10.5194/gmd-18-2329-2025, https://doi.org/10.5194/gmd-18-2329-2025, 2025
Short summary
Short summary
Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical model developed based on the Vegetation Integrative Simulator for Trace gases (VISIT) to represent satellite-observed SIF. Our simulations reproduced the global distribution and seasonal variations in observed SIF. VISIT-SIF helps to improve photosynthetic processes through a combination of biogeochemical modeling and observed SIF.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
Geosci. Model Dev., 18, 2249–2274, https://doi.org/10.5194/gmd-18-2249-2025, https://doi.org/10.5194/gmd-18-2249-2025, 2025
Short summary
Short summary
Our study maps global nitrogen (N) and phosphorus (P) availability and how they changed from 1901 to 2018. We find that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation increased, especially in the tropics, while N limitation decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, T. Luke Smallman, Susan C. Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zaehle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek S. El-Madany, Mirco Migliavacca, Marika Honkanen, Yann H. Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaétan Pique, Amanda Ojasalo, Shaun Quegan, Peter J. Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
Geosci. Model Dev., 18, 2137–2159, https://doi.org/10.5194/gmd-18-2137-2025, https://doi.org/10.5194/gmd-18-2137-2025, 2025
Short summary
Short summary
When it comes to climate change, the land surface is where the vast majority of impacts happen. The task of monitoring those impacts across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us capture the changes that happen on our lands.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
Geosci. Model Dev., 18, 2021–2050, https://doi.org/10.5194/gmd-18-2021-2025, https://doi.org/10.5194/gmd-18-2021-2025, 2025
Short summary
Short summary
Under climate change, the conditions necessary for wildfires to form are occurring more frequently in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a basis for future improvements.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev., 18, 1895–1916, https://doi.org/10.5194/gmd-18-1895-2025, https://doi.org/10.5194/gmd-18-1895-2025, 2025
Short summary
Short summary
We describe and test the size-based Nutrient-Unicellular-Multicellular model, which defines unicellular plankton using a single set of parameters, on a eutrophic and oligotrophic ecosystem. The results demonstrate that both sites can be modeled with similar parameters and robust performance over a wide range of parameters. The study shows that the model is useful for non-experts and applicable for modeling ecosystems with limited data. It holds promise for evolutionary and deep-time climate models.
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev., 18, 977–1000, https://doi.org/10.5194/gmd-18-977-2025, https://doi.org/10.5194/gmd-18-977-2025, 2025
Short summary
Short summary
Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change, the carbon storage in sediments slows down carbon cycling and influences feedbacks in the atmosphere–ocean–sediment system. This paper describes the coupling of a sediment model to an ocean biogeochemistry model and presents results under the pre-industrial climate and under CO2 perturbation.
Juliette Bernard, Elodie Salmon, Marielle Saunois, Shushi Peng, Penélope Serrano-Ortiz, Antoine Berchet, Palingamoorthy Gnanamoorthy, Joachim Jansen, and Philippe Ciais
Geosci. Model Dev., 18, 863–883, https://doi.org/10.5194/gmd-18-863-2025, https://doi.org/10.5194/gmd-18-863-2025, 2025
Short summary
Short summary
Despite their importance, uncertainties remain in the evaluation of the drivers of temporal variability of methane emissions from wetlands on a global scale. Here, a simplified global model is developed, taking advantage of advances in remote-sensing data and in situ observations. The model reproduces the large spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights into sensitivity analyses.
Carolina Natel, David Martin Belda, Peter Anthoni, Neele Haß, Sam Rabin, and Almut Arneth
EGUsphere, https://doi.org/10.5194/egusphere-2024-4064, https://doi.org/10.5194/egusphere-2024-4064, 2025
Short summary
Short summary
Complex models predict forest carbon responses to future climate change but are slow and computationally intensive, limiting large-scale analyses. We used machine learning to accelerate predictions from the LPJ-GUESS vegetation model. Our emulators, based on random forests and neural networks, achieved 97 % faster simulations. This approach enables rapid exploration of climate mitigation strategies and supports informed policy decisions.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie A. Fisher, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 18, 287–317, https://doi.org/10.5194/gmd-18-287-2025, https://doi.org/10.5194/gmd-18-287-2025, 2025
Short summary
Short summary
Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Theo Glauch, Julia Marshall, Christoph Gerbig, Santiago Botía, Michał Gałkowski, Sanam N. Vardag, and André Butz
EGUsphere, https://doi.org/10.5194/egusphere-2024-3692, https://doi.org/10.5194/egusphere-2024-3692, 2025
Short summary
Short summary
The Vegetation Photosynthesis and Respiration Model (VPRM) estimates carbon exchange between the atmosphere and biosphere by modeling gross primary production and respiration using satellite data and weather variables. Our new version, pyVPRM, supports diverse satellite products like Sentinel-2, MODIS, VIIRS and new land cover maps, enabling high spatial and temporal resolution. This improves flux estimates, especially in complex landscapes, and ensures continuity as MODIS nears decommissioning.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
Short summary
Short summary
The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
Short summary
Short summary
In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
Short summary
Short summary
The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
Short summary
Short summary
A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Benjamin Franklin Meyer, João Paulo Darela-Filho, Konstantin Gregor, Allan Buras, Qiao-Lin Gu, Andreas Krause, Daijun Liu, Phillip Papastefanou, Sijeh Asuk, Thorsten E. E. Grams, Christian S. Zang, and Anja Rammig
EGUsphere, https://doi.org/10.5194/egusphere-2024-3352, https://doi.org/10.5194/egusphere-2024-3352, 2024
Short summary
Short summary
Climate change has increased the likelihood of drought events across Europe, potentially threatening European forest carbon sink. Dynamic vegetation models with mechanistic plant hydraulic architecture are needed to model these developments. We evaluate the plant hydraulic architecture version of LPJ-GUESS and show it's capability at capturing species-specific evapotranspiration responses to drought and reproducing flux observations of both gross primary production and evapotranspiration.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
Short summary
Short summary
This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
Short summary
Short summary
We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
Short summary
Short summary
Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Daehyuk Kim, Hyun-Chae Jung, Jae-Hong Moon, and Na-Hyeon Lee
EGUsphere, https://doi.org/10.5194/egusphere-2024-1509, https://doi.org/10.5194/egusphere-2024-1509, 2024
Short summary
Short summary
Physical–biogeochemical ocean global models is difficult to analyze oceanic environmental systems. To accurately understand the physical–biogeochemical processes at the regional scale, physical and biogeochemical models were coupled at a high resolution. The results successfully simulated the seasonal variations of chlorophyll and nutrients, particularly in the marginal seas, which were not captured by global models. The model is an important tool for studying physical–biogeochemical processes.
Isabelle Maréchaux, Fabian Jörg Fischer, Sylvain Schmitt, and Jérôme Chave
EGUsphere, https://doi.org/10.5194/egusphere-2024-3104, https://doi.org/10.5194/egusphere-2024-3104, 2024
Short summary
Short summary
We describe TROLL 4.0, a simulator of forest dynamics that represents trees in a virtual space at one-meter resolution. Tree birth, growth, death and the underlying physiological processes such as carbon assimilation, water transpiration and leaf phenology depend on plant traits that are measured in the field for many individuals and species. The model is thus capable of jointly simulating forest structure, diversity and ecosystem functioning, a major challenge in modelling vegetation dynamics.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
Short summary
Short summary
We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Sylvain Schmitt, Fabian Fischer, James Ball, Nicolas Barbier, Marion Boisseaux, Damien Bonal, Benoit Burban, Xiuzhi Chen, Géraldine Derroire, Jeremy Lichstein, Daniela Nemetschek, Natalia Restrepo-Coupe, Scott Saleska, Giacomo Sellan, Philippe Verley, Grégoire Vincent, Camille Ziegler, Jérôme Chave, and Isabelle Maréchaux
EGUsphere, https://doi.org/10.5194/egusphere-2024-3106, https://doi.org/10.5194/egusphere-2024-3106, 2024
Short summary
Short summary
We evaluate the capability of TROLL 4.0, a simulator of forest dynamics, to represent tropical forest structure, diversity and functioning in two Amazonian forests. Evaluation data include forest inventories, carbon and water fluxes between the forest and the atmosphere, and leaf area and canopy height from remote-sensing products. The model realistically predicts the structure and composition, and the seasonality of carbon and water fluxes at both sites.
Elchin E. Jafarov, Helene Genet, Velimir V. Vesselinov, Valeria Briones, Aiza Kabeer, Andrew L. Mullen, Benjamin Maglio, Tobey Carman, Ruth Rutter, Joy Clein, Chu-Chun Chang, Dogukan Teber, Trevor Smith, Joshua M. Rady, Christina Schädel, Jennifer D. Watts, Brendan M. Rogers, and Susan M. Natali
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-158, https://doi.org/10.5194/gmd-2024-158, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
Thawing permafrost could greatly impact global climate. Our study improves modeling of carbon cycling in Arctic ecosystems. We developed an automated method to fine-tune a model that simulates carbon and nitrogen flows, using computer-generated data. Using computer-generated data, we tested our method and found it enhances accuracy and reduces the time needed for calibration. This work helps make climate predictions more reliable in sensitive permafrost regions.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
Short summary
Short summary
Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
Short summary
Short summary
The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
Short summary
Short summary
Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
Short summary
Short summary
In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Ye Liu, Huilin Huang, Sing-Chun Wang, Tao Zhang, Donghui Xu, and Yang Chen
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-151, https://doi.org/10.5194/gmd-2024-151, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
This study integrates machine learning with a land surface model to improve wildfire predictions in North America. Traditional models struggle with accurately simulating burned areas due to simplified processes. By combining the predictive power of machine learning with a land model, our hybrid framework better captures fire dynamics. This approach enhances our understanding of wildfire behavior and aids in developing more effective climate and fire management strategies.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
Short summary
Short summary
A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
Short summary
Short summary
A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
Short summary
Short summary
We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
Short summary
Short summary
To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
Short summary
Short summary
This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
Short summary
Short summary
Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Jacquelyn K. Shuman, Rosie A. Fisher, Charles Koven, Ryan Knox, Lara Kueppers, and Chonggang Xu
Geosci. Model Dev., 17, 4643–4671, https://doi.org/10.5194/gmd-17-4643-2024, https://doi.org/10.5194/gmd-17-4643-2024, 2024
Short summary
Short summary
We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
Short summary
Short summary
Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
Short summary
Short summary
Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Oliver Perkins, Matthew Kasoar, Apostolos Voulgarakis, Cathy Smith, Jay Mistry, and James D. A. Millington
Geosci. Model Dev., 17, 3993–4016, https://doi.org/10.5194/gmd-17-3993-2024, https://doi.org/10.5194/gmd-17-3993-2024, 2024
Short summary
Short summary
Wildfire is often presented in the media as a danger to human life. Yet globally, millions of people’s livelihoods depend on using fire as a tool. So, patterns of fire emerge from interactions between humans, land use, and climate. This complexity means scientists cannot yet reliably say how fire will be impacted by climate change. So, we developed a new model that represents globally how people use and manage fire. The model reveals the extent and diversity of how humans live with and use fire.
Amos P. K. Tai, David H. Y. Yung, and Timothy Lam
Geosci. Model Dev., 17, 3733–3764, https://doi.org/10.5194/gmd-17-3733-2024, https://doi.org/10.5194/gmd-17-3733-2024, 2024
Short summary
Short summary
We have developed the Terrestrial Ecosystem Model in R (TEMIR), which simulates plant carbon and pollutant uptake and predicts their response to varying atmospheric conditions. This model is designed to couple with an atmospheric chemistry model so that questions related to plant–atmosphere interactions, such as the effects of climate change, rising CO2, and ozone pollution on forest carbon uptake, can be addressed. The model has been well validated with both ground and satellite observations.
Fabian Stenzel, Johanna Braun, Jannes Breier, Karlheinz Erb, Dieter Gerten, Jens Heinke, Sarah Matej, Sebastian Ostberg, Sibyll Schaphoff, and Wolfgang Lucht
Geosci. Model Dev., 17, 3235–3258, https://doi.org/10.5194/gmd-17-3235-2024, https://doi.org/10.5194/gmd-17-3235-2024, 2024
Short summary
Short summary
We provide an R package to compute two biosphere integrity metrics that can be applied to simulations of vegetation growth from the dynamic global vegetation model LPJmL. The pressure metric BioCol indicates that we humans modify and extract > 20 % of the potential preindustrial natural biomass production. The ecosystems state metric EcoRisk shows a high risk of ecosystem destabilization in many regions as a result of climate change and land, water, and fertilizer use.
Elin Ristorp Aas, Heleen A. de Wit, and Terje K. Berntsen
Geosci. Model Dev., 17, 2929–2959, https://doi.org/10.5194/gmd-17-2929-2024, https://doi.org/10.5194/gmd-17-2929-2024, 2024
Short summary
Short summary
By including microbial processes in soil models, we learn how the soil system interacts with its environment and responds to climate change. We present a soil process model, MIMICS+, which is able to reproduce carbon stocks found in boreal forest soils better than a conventional land model. With the model we also find that when adding nitrogen, the relationship between soil microbes changes notably. Coupling the model to a vegetation model will allow for further study of these mechanisms.
Thomas Wutzler, Christian Reimers, Bernhard Ahrens, and Marion Schrumpf
Geosci. Model Dev., 17, 2705–2725, https://doi.org/10.5194/gmd-17-2705-2024, https://doi.org/10.5194/gmd-17-2705-2024, 2024
Short summary
Short summary
Soil microbes provide a strong link for elemental fluxes in the earth system. The SESAM model applies an optimality assumption to model those linkages and their adaptation. We found that a previous heuristic description was a special case of a newly developed more rigorous description. The finding of new behaviour at low microbial biomass led us to formulate the constrained enzyme hypothesis. We now can better describe how microbially mediated linkages of elemental fluxes adapt across decades.
Salvatore R. Curasi, Joe R. Melton, Elyn R. Humphreys, Txomin Hermosilla, and Michael A. Wulder
Geosci. Model Dev., 17, 2683–2704, https://doi.org/10.5194/gmd-17-2683-2024, https://doi.org/10.5194/gmd-17-2683-2024, 2024
Short summary
Short summary
Canadian forests are responding to fire, harvest, and climate change. Models need to quantify these processes and their carbon and energy cycling impacts. We develop a scheme that, based on satellite records, represents fire, harvest, and the sparsely vegetated areas that these processes generate. We evaluate model performance and demonstrate the impacts of disturbance on carbon and energy cycling. This work has implications for land surface modeling and assessing Canada’s terrestrial C cycle.
Yannek Käber, Florian Hartig, and Harald Bugmann
Geosci. Model Dev., 17, 2727–2753, https://doi.org/10.5194/gmd-17-2727-2024, https://doi.org/10.5194/gmd-17-2727-2024, 2024
Short summary
Short summary
Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
Cited articles
Anfodillo, T., Rento, S., Carraro, V., Furlanetto, L., Urbinati, C., and Carrer, M.: Tree water relations and climatic variations at the alpine timberline: seasonal changes of sap flux and xylem water potential in Larix decidua Miller, Picea abies (L.) Karst, and Pinus cembra L, Ann. Des Sci. Forest., 55, 159–172, 1998.
Assmann, E.: Waldertragskunde, BLV, München, Bonn, Wien, 1962.
Bigler, C., Braker, O. U., Bugmann, H., Dobbertin, M., and Rigling, A.: Drought as an inciting mortality factor in Scots pine stands of the Valais, Switzerland, Ecosystems, 9, 330–343, 2006.
Bonan, G. B.: Forests and climate change: Forcings, feedbacks, and the climate benefits of forests, Science, 320, 1444–1449, 2008.
Brändli, U.-B. (Ed.): Schweizerisches Landesforstinventar. Ergebnisse der dritten Erhebung 2004–2006, Birmensdorf, Eidgenössische Forschungsanstalt für Wald, Schnee und Landschaft, Bern, Bundesamt für Umwelt, Wald und Landschaft, 2009.
Bugmann, H.: On the ecology of mountainous forests in a changing climate: a simulation study, Ph.D. thesis, Swiss Federal Institute of Technology, 1994.
Bugmann, H.: A simplified forest model to study species composition along climate gradients, Ecology, 77, 2055–2074, 1996.
Bugmann, H., Fischlin, A., and Kienast, F.: Model convergence and state variable update in forest gap models, Ecol. Model., 89, 197–208, 1996.
Bugmann, H., Lindner, M., Lasch, P., Flechsig, M., Ebert, B., and Cramer, W.: Scaling issues in forest succession modelling, in: Aspen-Global-Change-Institute Workshop on Scaling from Site-Specific Observations to Global Model Grids, 265–289, Aspen, Colorado, 1997.
Cheaib, A., Badeau, V., Boe, J., Chuine, I., Delire, C., Dufrene, E., Francois, C., Gritti, E. S., Legay, M., Page, C., Thuiller, W., Viovy, N., and Leadley, P.: Climate change impacts on tree ranges: model intercomparison facilitates understanding and quantification of uncertainty, Ecol. Lett., 15, 533–544, 2012.
EAFV (Ed.): Schweizerisches Landesforstinventar. Ergebnisse der Erstaufnahme 1982–1986, vol. 305 of Berichte Eidgenössische. Forschungsanstalt für Wald, Schnee und Landschaft\/, Eidgenössische Anstalt für das forstliche Versuchswesen in Zusammenarbeit mit dem Bundesamt für Forstwesen und Landschaftsschutz Birmensdorf, 1988.
Eilmann, B. and Rigling, A.: Tree-growth analyses to estimate tree species' drought tolerance, Tree Physiol., 32, 178–187, 2012.
Ellenberg, H.: Vegetation Mitteleuropas mit den Alpen in ökologischer Sicht, Verlag Eugen Ulmer, Stuttgart, 1986.
Epstein, H. E., Yu, Q., Kaplan, J. O., and Lischke, H.: Simulating future changes in Arctic and subarctic vegetation, Comput. Sci. Eng., 9, 12–23, 2007.
Falster, D. S., Brannstrom, A., Dieckmann, U., and Westoby, M.: Influence of four major plant traits on average height, leaf-area cover, net primary productivity, and biomass density in single-species forests: a theoretical investigation, J. Ecol., 99, 148–164, 2010.
Fischlin, A. and Midgley, G.: Ecosystems, their properties, goods and services., in: Climate Change 2007: Impacts, adaption and vulnerability. Contributing of Working Group II to the Assessment Report Four of the Intergovernmental Panel of Climate Change (IPCC), edited by: Parry, M., Canziani, O., Palutikof, J., van der Lindenand, P., and Hanson, C., Cambridge University Press, Cambridge, UK, 211–272, 2007.
Fisher, R., McDowell, N., Purves, D., Moorcroft, P., Sitch, S., Cox, P., Huntingford, C., Meir, P., and Woodward, F. I.: Assessing uncertainties in a second-generation dynamic vegetation model caused by ecological scale limitations, New Phytologist, 187, 666–681, 2010.
Frehner, M., Wasser, B., and Schwitter, R.: Nachhaltigkeit und Erfolskontrolle im Schutzwald: Wegleitung für Pflegemassnahmen in Wäldern mit Schutzfunktion, BUWAL, Bern, 2005.
Frei, E.: Landwirtschafliche Bodeneignungskarte der Schweiz, Eidg. Drucksachen- und Materialzentrale, 1976.
Friedlingstein, P., Cox, P., Betts, R., Bopp, L., Von Bloh, W., Brovkin, V., Cadule, P., Doney, S., Eby, M., Fung, I., Bala, G., John, J., Jones, C., Joos, F., Kato, T., Kawamiya, M., Knorr, W., Lindsay, K., Matthews, H. D., Raddatz, T., Rayner, P., Reick, C., Roeckner, E., Schnitzler, K. G., Schnur, R., Strassmann, K., Weaver, A. J., Yoshikawa, C., and Zeng, N.: Climate-carbon cycle feedback analysis: Results from the C(4)MIP model intercomparison, J. Climate, 19, 3337–3353, 2006.
Fulton, M. R.: Adult recruitment as a function of juvenile growth-rate in size-structured plant-populations, Oikos, 62, 102–105, 1991.
Gimmi, U., Wohlgemuth, T., Rigling, A., Hoffmann, C. W., and Burgi, M.: Land-use and climate change effects in forest compositional trajectories in a dry Central-Alpine valley, Ann. Forest Sci., 67, 701p1–701p9, 2010.
Gritti, E. S., Smith, B., and Sykes, M. T.: Vulnerability of Mediterranean Basin ecosystems to climate change and invasion by exotic plant species, J. Biogeogr., 33, 145–157, 2006.
Hickler, T., Smith, B., Sykes, M. T., Davis, M. B., Sugita, S., and Walker, K.: Using a generalized vegetation model to simulate vegetation dynamics in northeastern USA, Ecology, 85, 519–530, 2004.
Hickler, T., Smith, B., Prentice, I. C., Mjofors, K., Miller, P., Arneth, A., and Sykes, M. T.: $CO_{2}$ fertilization in temperate FACE experiments not representative of boreal and tropical forests, Glob. Change Biol., 14, 1531–1542, 2008.
Hickler, T., Fronzek, S., Araujo, M. B., Schweiger, O., Thuiller, W., and Sykes, M. T.: An ecosystem model-based estimate of changes in water availability differs from water proxies that are commonly used in species distribution models, Global Ecol. Biogeogr., 18, 304–313, 2009.
Hickler, T., Vohland, K., Feehan, J., Miller, P. A., Smith, B., Costa, L., Giesecke, T., Fronzek, S., Carter, T. R., Cramer, W., Kuhn, I., and Sykes, M. T.: Projecting the future distribution of European potential natural vegetation zones with a generalized, tree species-based dynamic vegetation model, Global Ecol. Biogeogr., 21, 50–63, 2012.
IPCC: Climate Change 2001: The scientific basis. Contribution working group I to the third assessment report of the IPCC, Tech. rep., 2001.
IPCC: Good Practice Guidance for Land Use, Land-Use Change and Forestry (IPCC GPG LULUCF), Tech. rep., 2003.
Jarvis, P. G.: Scaling processes and problems, Plant Cell Environ., 18, 1079–1089, 1995.
Klimek, A., Rolbiecki, S., Rolbiecki, R., Hilszczanska, D., and Malczyk, P.: Effects of Organic Fertilization and Mulching under Micro-Sprinkler Irrigation on Growth and Mycorrhizal Colonization of European Larch Seedlings, and Occurrence of Soil Mites, Polish J. Environ. Studies, 20, 1211–1219, 2011.
Koca, D., Smith, B., and Sykes, M. T.: Modelling regional climate change effects on potential natural ecosystems in Sweden, Climatic Change, 78, 381–406, 2006.
Kohyama, T.: Size-structured tree populations in gap-dynamic forest – the forest architecture hypothesis for the stable coexistence of species, J, Ecol., 81, 131–143, 1993.
Lischke, H.: Modeling tree species migration in the Alps during the Holocene: What creates complexity?, Ecol, Complex,, 2, 159–174, 2005.
Lischke, H., Bolliger, J., and Seppelt, R.: Dynamic spatio-temporal landscape models, Landscape Ecology, 23, 283–306, 2006a.
Lischke, H., Zimmermann, N. E., Bolliger, J., Rickebusch, S., and Löffler, T. J.: TreeMig: A forest-landscape model for simulating spatio-temporal patterns from stand to landscape scale, Ecol. Model., 199, 409–420, 2006b.
Matras, J. and Pâques, L.: EUFORGEN Technical guidelines for genetic conservation and use for European Larch, Rome, Italy, 2008.
Migliavacca, M., Cremonese, E., Colombo, R., Busetto, L., Galvagno, M., Ganis, L., Meroni, M., Pari, E., Rossini, M., Siniscalco, C., and di Cella, U. M.: European larch phenology in the Alps: can we grasp the role of ecological factors by combining field observations and inverse modelling?, Int. J. Biometeorol., 52, 587–605, 2008.
Miller, P. A., Giesecke, T., Hickler, T., Bradshaw, R. H. W., Smith, B., Seppa, H., Valdes, P. J., and Sykes, M. T.: Exploring climatic and biotic controls on Holocene vegetation change in Fennoscandia, J. Ecol., 96, 247–259, 2008.
Mitchell, T., Carter, R., Jones, P., Hulme, M., and New, M.: A comprehensive set of high-resolution grids of monthly climate for Europe and the globe: the observed record (1901–2000) and 16 scenarious (2001–2100), Tech. rep., 2004.
Moorcroft, P. R., Hurtt, G. C., and Pacala, S. W.: A method for scaling vegetation dynamics: The ecosystem demography model (ED), Ecol. Monogr., 71, 557–585, 2001.
Murray, M. B., Cannell, M. G. R., and Smith, R. I.: Date of budburst of 15 tree species in Britain following climatic warming, J. Appl. Ecol., 26, 693–700, 1989.
Neilson, R. P., Pitelka, L. F., Solomon, A. M., Nathan, R., Midgley, G. F., Fragoso, J. M. V., Lischke, H., and Thompson, K.: Forecasting regional to global plant migration in response to climate change, Bioscience, 55, 749–759, 2005.
Oren, R., Whitehead, D., and Kaufmann, M. R.: Leaf area dynamics of coniferous forests, in: Ecophysiology of coniferous forests, edited by: Smith, W. K. and Hinckley, T. M., 181–233, Academic Press, San Diego, 1995.
Prentice, I. C., Sykes, M. T., and Cramer, W.: A simulation-model for the transient effects of climate change on forest landscapes, Ecol. Model., 65, 51–70, 1993.
Prentice, I. C., Bondeau, A., Cramer, W., Harrison, S. P., Hickler, T., Lucht, W., Sitch, S., Smith, B., and Sykes, M.: Dynamic Global Vegetation Modeling: Quantifying Terrestrial Ecosystem Responses to Large-Scale Environmental Change, in: Terrestrial Ecosystems in a Changing World. The IGBP Series, edited by: Canadell, J., Pataki, D., and Pitelka, L. F., Springer-Verlag, Berlin, 2007.
Purves, D. and Pacala, S.: Predictive models of forest dynamics, Science, 320, 1452–1453, 2008.
Quillet, A., Peng, C., and Garneau, M.: Toward dynamic global vegetation models for simulating vegetation-climate interactions and feedbacks: recent developments, limitations, and future challenges, Environ. Rev., 18, 333–353, 2010.
Rebetez, M. and Dobbertin, M.: Climate change may already threaten Scots pine stands in the Swiss Alps, Theor. Appl. Climatol., 79, 1–9, 2004.
Roloff, A.: Bäume: Lexikon der praktischen Baumbiologie, vol. 2, Wiley – VCH, 2010.
Sato, H., Itoh, A., and Kohyama, T.: SEIB-DGVM: A new dynamic global vegetation model using a spatially explicit individual-based approach, Ecol. Model., 200, 279–307, 2007.
Scherstjanoi, M., Kaplan, J. O., Poulter, B., and Lischke, H.: TreeM-LPJ: A computationally efficient plant physiological height-class-structured forest model, Ecological Complexity, in preparation, 2013.
Schneebeli, M. and Meyer-Grass, M.: Avalanche starting zones below the timber line-structure of forest, in: International Snow Science Workshop, 176–181, Breckenridge, Colorado, 1992.
Shugart, H. H.: A Theory of Forest Dynamics, The Ecological Implications of Forest Succession Models., Springer, New York, 1984.
Shuman, J. K., Shugart, H. H., and O'Halloran, T. L.: Sensitivity of Siberian larch forests to climate change, Glob. Change Biol., 17, 2370–2384, 2011.
Sitch, S., Smith, B., Prentice, I. C., Arneth, A., Bondeau, A., Cramer, W., Kaplan, J. O., Levis, S., Lucht, W., Sykes, M. T., Thonicke, K., and Venevsky, S.: Evaluation of ecosystem dynamics, plant geography and terrestrial carbon cycling in the LPJ dynamic global vegetation model, Glob. Change Biol., 9, 161–185, 2003.
Smith, B., Prentice, I. C., and Sykes, M. T.: Representation of vegetation dynamics in the modelling of terrestrial ecosystems: comparing two contrasting approaches within European climate space, Global Ecol. Biogeogr., 10, 621–637, 2001.
Smith, B., Knorr, W., Widlowski, J. L., Pinty, B., and Gobron, N.: Combining remote sensing data with process modelling to monitor boreal conifer forest carbon balances, Forest Ecol. Manage., 255, 3985–3994, 2008.
Svejgaard Jensen, J.: EUFORGEN Technical Guidelines for genetic conservation and use for lime (Tilia spp.)., Tech. rep., International Plant Genetic Resources Institute, 2003.
Sykes, M. T., Prentice, I. C., and Cramer, W.: A bioclimatic model for the potential distributions of north European tree species under present and future climates, J. Biogeogr., 23, 203–233, 1996.
Thonicke, K., Venevsky, S., Sitch, S., and Cramer, W.: The role of fire disturbance for global vegetation dynamics: coupling fire into a Dynamic Global Vegetation Model, Global Ecol. Biogeogr., 10, 661–677, 2001.
Thornton, P. E., Running, S. W., and White, M. A.: Generating surfaces of daily meteorological variables over large regions of complex terrain, J. Hydrol., 190, 214–251, 1997.
Valentini, R., Anfodillo, T., and Ehlringer, J.: Water sources utilization and carbon isotope composition ($d^{13}$C) of co-occurring species along an altitudinal gradient in the Italian Alps, Can. J. Forest Res., 24, 1575–1578, 1994.
von Foerster, H.: Some Remarks on Changing Populations, Grune and Stratton, New York, 1959.
Welten, M. and Sutter, R.: Verbreitungsatlas der Farn- und Blütenpflanzen der Schweiz, Birkhäuser, Basel, 1982.
Wolf, A., Blyth, E., Harding, R., Jacob, D., Keup-Thiel, E., Goettel, H., and Callaghan, T.: Sensitivity of an ecosystem model to hydrology and temperature, Climatic Change, 87, 75–89, 2008a.
Wolf, A., Callaghan, T. V., and Larson, K.: Future changes in vegetation and ecosystem function of the Barents Region, Climatic Change, 87, 51–73, 2008b.
Wramneby, A.and Smith, B., Zaehle, S., and Sykes, M. T.: Parameter uncertainties in the modelling of vegetation dynamics – Effects on tree community structure and ecosystem functioning in European forest biomes, Ecol. Model., 216, 277–290, 2008.
Yan, X. D. and Shugart, H. H.: FAREAST: a forest gap model to simulate dynamics and patterns of eastern Eurasian forests, J. Biogeogr., 32, 1641–1658, 2005.
Zumbrunnen, T., Bugmann, H., Conedera, M., and Burgi, M.: Linking Forest Fire Regimes and Climate-A Historical Analysis in a Dry Inner Alpine Valley, Ecosystems, 12, 73–86, 2009.
