Articles | Volume 17, issue 11
https://doi.org/10.5194/gmd-17-4643-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-17-4643-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Development and technical paper
| 
13 Jun 2024
Development and technical paper |
| 13 Jun 2024
| 13 Jun 2024
Dynamic ecosystem assembly and escaping the “fire trap” in the tropics: insights from FATES_15.0.0
Jacquelyn K. Shuman
CORRESPONDING AUTHOR
Earth Science Division, NASA Ames Research Center, P.O. Box 1, M/S N245-4, Moffett Field, CA 94035-0001, USA
Climate and Global Dynamics, National Center for Atmospheric Research, P.O. Box 3000, Boulder, CO 80307-3000, USA
Rosie A. Fisher
CICERO Center for International Climate Research, Oslo, 87350, Norway
Charles Koven
Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
Ryan Knox
Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
Lara Kueppers
Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
Energy and Resources Group, University of California, Berkeley, 345 Giannini Hall no. 3050, Berkeley, CA 94720, USA
Chonggang Xu
Earth and Environmental Sciences Division, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, NM 87545, USA
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Wu Ma, Lu Zhai, Alexandria Pivovaroff, Jacquelyn Shuman, Polly Buotte, Junyan Ding, Bradley Christoffersen, Ryan Knox, Max Moritz, Rosie A. Fisher, Charles D. Koven, Lara Kueppers, and Chonggang Xu
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Katherine Dagon, Benjamin M. Sanderson, Rosie A. Fisher, and David M. Lawrence
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Robinson I. Negrón-Juárez, Jennifer A. Holm, Boris Faybishenko, Daniel Magnabosco-Marra, Rosie A. Fisher, Jacquelyn K. Shuman, Alessandro C. de Araujo, William J. Riley, and Jeffrey Q. Chambers
Biogeosciences, 17, 6185–6205, https://doi.org/10.5194/bg-17-6185-2020, https://doi.org/10.5194/bg-17-6185-2020, 2020
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The temporal variability in the Landsat satellite near-infrared (NIR) band captured the dynamics of forest regrowth after disturbances in Central Amazon. This variability was represented by the dynamics of forest regrowth after disturbances were properly represented by the ELM-FATES model (Functionally Assembled Terrestrial Ecosystem Simulator (FATES) in the Energy Exascale Earth System Model (E3SM) Land Model (ELM)).
Maoyi Huang, Yi Xu, Marcos Longo, Michael Keller, Ryan G. Knox, Charles D. Koven, and Rosie A. Fisher
Biogeosciences, 17, 4999–5023, https://doi.org/10.5194/bg-17-4999-2020, https://doi.org/10.5194/bg-17-4999-2020, 2020
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Vivek K. Arora, Anna Katavouta, Richard G. Williams, Chris D. Jones, Victor Brovkin, Pierre Friedlingstein, Jörg Schwinger, Laurent Bopp, Olivier Boucher, Patricia Cadule, Matthew A. Chamberlain, James R. Christian, Christine Delire, Rosie A. Fisher, Tomohiro Hajima, Tatiana Ilyina, Emilie Joetzjer, Michio Kawamiya, Charles D. Koven, John P. Krasting, Rachel M. Law, David M. Lawrence, Andrew Lenton, Keith Lindsay, Julia Pongratz, Thomas Raddatz, Roland Séférian, Kaoru Tachiiri, Jerry F. Tjiputra, Andy Wiltshire, Tongwen Wu, and Tilo Ziehn
Biogeosciences, 17, 4173–4222, https://doi.org/10.5194/bg-17-4173-2020, https://doi.org/10.5194/bg-17-4173-2020, 2020
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Charles D. Koven, Ryan G. Knox, Rosie A. Fisher, Jeffrey Q. Chambers, Bradley O. Christoffersen, Stuart J. Davies, Matteo Detto, Michael C. Dietze, Boris Faybishenko, Jennifer Holm, Maoyi Huang, Marlies Kovenock, Lara M. Kueppers, Gregory Lemieux, Elias Massoud, Nathan G. McDowell, Helene C. Muller-Landau, Jessica F. Needham, Richard J. Norby, Thomas Powell, Alistair Rogers, Shawn P. Serbin, Jacquelyn K. Shuman, Abigail L. S. Swann, Charuleka Varadharajan, Anthony P. Walker, S. Joseph Wright, and Chonggang Xu
Biogeosciences, 17, 3017–3044, https://doi.org/10.5194/bg-17-3017-2020, https://doi.org/10.5194/bg-17-3017-2020, 2020
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Andrew H. MacDougall, Thomas L. Frölicher, Chris D. Jones, Joeri Rogelj, H. Damon Matthews, Kirsten Zickfeld, Vivek K. Arora, Noah J. Barrett, Victor Brovkin, Friedrich A. Burger, Micheal Eby, Alexey V. Eliseev, Tomohiro Hajima, Philip B. Holden, Aurich Jeltsch-Thömmes, Charles Koven, Nadine Mengis, Laurie Menviel, Martine Michou, Igor I. Mokhov, Akira Oka, Jörg Schwinger, Roland Séférian, Gary Shaffer, Andrei Sokolov, Kaoru Tachiiri, Jerry Tjiputra, Andrew Wiltshire, and Tilo Ziehn
Biogeosciences, 17, 2987–3016, https://doi.org/10.5194/bg-17-2987-2020, https://doi.org/10.5194/bg-17-2987-2020, 2020
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Kurt C. Solander, Brent D. Newman, Alessandro Carioca de Araujo, Holly R. Barnard, Z. Carter Berry, Damien Bonal, Mario Bretfeld, Benoit Burban, Luiz Antonio Candido, Rolando Célleri, Jeffery Q. Chambers, Bradley O. Christoffersen, Matteo Detto, Wouter A. Dorigo, Brent E. Ewers, Savio José Filgueiras Ferreira, Alexander Knohl, L. Ruby Leung, Nate G. McDowell, Gretchen R. Miller, Maria Terezinha Ferreira Monteiro, Georgianne W. Moore, Robinson Negron-Juarez, Scott R. Saleska, Christian Stiegler, Javier Tomasella, and Chonggang Xu
Hydrol. Earth Syst. Sci., 24, 2303–2322, https://doi.org/10.5194/hess-24-2303-2020, https://doi.org/10.5194/hess-24-2303-2020, 2020
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We evaluate the soil moisture response in the humid tropics to El Niño during the three most recent super El Niño events. Our estimates are compared to in situ soil moisture estimates that span five continents. We find the strongest and most consistent soil moisture decreases in the Amazon and maritime southeastern Asia, while the most consistent increases occur over eastern Africa. Our results can be used to improve estimates of soil moisture in tropical ecohydrology models at multiple scales.
Christian G. Andresen, David M. Lawrence, Cathy J. Wilson, A. David McGuire, Charles Koven, Kevin Schaefer, Elchin Jafarov, Shushi Peng, Xiaodong Chen, Isabelle Gouttevin, Eleanor Burke, Sarah Chadburn, Duoying Ji, Guangsheng Chen, Daniel Hayes, and Wenxin Zhang
The Cryosphere, 14, 445–459, https://doi.org/10.5194/tc-14-445-2020, https://doi.org/10.5194/tc-14-445-2020, 2020
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Widely-used land models project near-surface drying of the terrestrial Arctic despite increases in the net water balance driven by climate change. Drying was generally associated with increases of active-layer depth and permafrost thaw in a warming climate. However, models lack important mechanisms such as thermokarst and soil subsidence that will change the hydrological regime and add to the large uncertainty in the future Arctic hydrological state and the associated permafrost carbon feedback.
Chris D. Jones, Thomas L. Frölicher, Charles Koven, Andrew H. MacDougall, H. Damon Matthews, Kirsten Zickfeld, Joeri Rogelj, Katarzyna B. Tokarska, Nathan P. Gillett, Tatiana Ilyina, Malte Meinshausen, Nadine Mengis, Roland Séférian, Michael Eby, and Friedrich A. Burger
Geosci. Model Dev., 12, 4375–4385, https://doi.org/10.5194/gmd-12-4375-2019, https://doi.org/10.5194/gmd-12-4375-2019, 2019
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Global warming is simply related to the total emission of CO2 allowing us to define a carbon budget. However, information on the Zero Emissions Commitment is a key missing link to assess remaining carbon budgets to achieve the climate targets of the Paris Agreement. It was therefore decided that a small targeted MIP activity to fill this knowledge gap would be extremely valuable. This article formalises the experimental design alongside the other CMIP6 documentation papers.
Marcos Longo, Ryan G. Knox, David M. Medvigy, Naomi M. Levine, Michael C. Dietze, Yeonjoo Kim, Abigail L. S. Swann, Ke Zhang, Christine R. Rollinson, Rafael L. Bras, Steven C. Wofsy, and Paul R. Moorcroft
Geosci. Model Dev., 12, 4309–4346, https://doi.org/10.5194/gmd-12-4309-2019, https://doi.org/10.5194/gmd-12-4309-2019, 2019
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Our paper describes the Ecosystem Demography model. This computer program calculates how plants and ground exchange heat, water, and carbon with the air, and how plants grow, reproduce and die in different climates. Most models simplify forests to an average big tree. We consider that tall, deep-rooted trees get more light and water than small plants, and that some plants can with shade and drought. This diversity helps us to better explain how plants live and interact with the atmosphere.
Marcos Longo, Ryan G. Knox, Naomi M. Levine, Abigail L. S. Swann, David M. Medvigy, Michael C. Dietze, Yeonjoo Kim, Ke Zhang, Damien Bonal, Benoit Burban, Plínio B. Camargo, Matthew N. Hayek, Scott R. Saleska, Rodrigo da Silva, Rafael L. Bras, Steven C. Wofsy, and Paul R. Moorcroft
Geosci. Model Dev., 12, 4347–4374, https://doi.org/10.5194/gmd-12-4347-2019, https://doi.org/10.5194/gmd-12-4347-2019, 2019
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The Ecosystem Demography model calculates the fluxes of heat, water, and carbon between plants and ground and the air, and the life cycle of plants in different climates. To test if our calculations were reasonable, we compared our results with field and satellite measurements. Our model predicts well the extent of the Amazon forest, how much light forests absorb, and how much water forests release to the air. However, it must improve the tree growth rates and how fast dead plants decompose.
Elias C. Massoud, Chonggang Xu, Rosie A. Fisher, Ryan G. Knox, Anthony P. Walker, Shawn P. Serbin, Bradley O. Christoffersen, Jennifer A. Holm, Lara M. Kueppers, Daniel M. Ricciuto, Liang Wei, Daniel J. Johnson, Jeffrey Q. Chambers, Charlie D. Koven, Nate G. McDowell, and Jasper A. Vrugt
Geosci. Model Dev., 12, 4133–4164, https://doi.org/10.5194/gmd-12-4133-2019, https://doi.org/10.5194/gmd-12-4133-2019, 2019
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We conducted a comprehensive sensitivity analysis to understand behaviors of a demographic vegetation model within a land surface model. By running the model 5000 times with changing input parameter values, we found that (1) the photosynthetic capacity controls carbon fluxes, (2) the allometry is important for tree growth, and (3) the targeted carbon storage is important for tree survival. These results can provide guidance on improved model parameterization for a better fit to observations.
Jennifer W. Harden, Jonathan A. O'Donnell, Katherine A. Heckman, Benjamin N. Sulman, Charles D. Koven, Chien-Lu Ping, and Gary J. Michaelson
SOIL Discuss., https://doi.org/10.5194/soil-2018-41, https://doi.org/10.5194/soil-2018-41, 2019
Revised manuscript not accepted
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We examined changes in soil carbon (C) associated with permafrost thaw, warming, and ecosystem shifts using a space-for-time study. Soil C turnover was estimated for soil C fractions using soil C and radiocarbon data. Observations informed a simple model to track soil C change over time. Both losses and gains of soil C occur in the profile due to shifts in C among density-separated fractions. Thawing initially resulted in C gains to mineral soil and eventually C losses as warming persists.
Ashehad A. Ali, Yuanchao Fan, Marife D. Corre, Martyna M. Kotowska, Evelyn Hassler, Fernando E. Moyano, Christian Stiegler, Alexander Röll, Ana Meijide, Andre Ringeler, Christoph Leuschner, Tania June, Suria Tarigan, Holger Kreft, Dirk Hölscher, Chonggang Xu, Charles D. Koven, Rosie Fisher, Edzo Veldkamp, and Alexander Knohl
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2018-236, https://doi.org/10.5194/gmd-2018-236, 2018
Revised manuscript not accepted
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We used carbon-use and water-use related datasets of small-holder rubber plantations from Jambi province, Indonesia to develop and calibrate a rubber plant functional type for the Community Land Model (CLM-rubber). Increased sensitivity of stomata to soil water stress and enhanced respiration costs enabled the model to capture the magnitude of transpiration and leaf area index. Including temporal variations in leaf life span enabled the model to better capture the seasonality of leaf litterfall.
Xiyan Xu, William J. Riley, Charles D. Koven, and Gensuo Jia
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-257, https://doi.org/10.5194/bg-2018-257, 2018
Preprint withdrawn
Nicholas C. Parazoo, Charles D. Koven, David M. Lawrence, Vladimir Romanovsky, and Charles E. Miller
The Cryosphere, 12, 123–144, https://doi.org/10.5194/tc-12-123-2018, https://doi.org/10.5194/tc-12-123-2018, 2018
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Carbon models suggest the permafrost carbon feedback (soil carbon emissions from permafrost thaw) acts as a slow, unobservable leak. We investigate if permafrost temperature provides an observable signal to detect feedbacks. We find a slow carbon feedback in warm sub-Arctic permafrost soils, but potentially rapid feedback in cold Arctic permafrost. This is surprising since the cold permafrost region is dominated by tundra and underlain by deep, cold permafrost thought impervious to such changes.
Wei Li, Philippe Ciais, Shushi Peng, Chao Yue, Yilong Wang, Martin Thurner, Sassan S. Saatchi, Almut Arneth, Valerio Avitabile, Nuno Carvalhais, Anna B. Harper, Etsushi Kato, Charles Koven, Yi Y. Liu, Julia E.M.S. Nabel, Yude Pan, Julia Pongratz, Benjamin Poulter, Thomas A. M. Pugh, Maurizio Santoro, Stephen Sitch, Benjamin D. Stocker, Nicolas Viovy, Andy Wiltshire, Rasoul Yousefpour, and Sönke Zaehle
Biogeosciences, 14, 5053–5067, https://doi.org/10.5194/bg-14-5053-2017, https://doi.org/10.5194/bg-14-5053-2017, 2017
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We used several observation-based biomass datasets to constrain the historical land-use change carbon emissions simulated by models. Compared to the range of the original modeled emissions (from 94 to 273 Pg C), the observationally constrained global cumulative emission estimate is 155 ± 50 Pg C (1σ Gaussian error) from 1901 to 2012. Our approach can also be applied to evaluate the LULCC impact of land-based climate mitigation policies.
Deborah A. Clark, Shinichi Asao, Rosie Fisher, Sasha Reed, Peter B. Reich, Michael G. Ryan, Tana E. Wood, and Xiaojuan Yang
Biogeosciences, 14, 4663–4690, https://doi.org/10.5194/bg-14-4663-2017, https://doi.org/10.5194/bg-14-4663-2017, 2017
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Improved modeling of tropical-forest carbon cycling is urgently needed to project future climate and to guide global policy for greenhouse gases. Tropical forests store and process immense amounts of carbon, and their carbon cycling may be responding to climate change. Our goal with this paper, a multidisciplinary collaboration between modelers and field ecologists, is to identify reference-level field data from tropical forests that can be used to guide the models for these key ecosystems.
Henrique F. Duarte, Brett M. Raczka, Daniel M. Ricciuto, John C. Lin, Charles D. Koven, Peter E. Thornton, David R. Bowling, Chun-Ta Lai, Kenneth J. Bible, and James R. Ehleringer
Biogeosciences, 14, 4315–4340, https://doi.org/10.5194/bg-14-4315-2017, https://doi.org/10.5194/bg-14-4315-2017, 2017
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We evaluate the Community Land Model (CLM4.5) against observations at an old-growth coniferous forest site that is subjected to water stress each summer. We found that, after calibration, CLM was able to reasonably simulate the observed fluxes of energy and carbon, carbon stocks, carbon isotope ratios, and ecosystem response to water stress. This study demonstrates that carbon isotopes can expose structural weaknesses in CLM and provide a key constraint that may guide future model development.
Sina Muster, Kurt Roth, Moritz Langer, Stephan Lange, Fabio Cresto Aleina, Annett Bartsch, Anne Morgenstern, Guido Grosse, Benjamin Jones, A. Britta K. Sannel, Ylva Sjöberg, Frank Günther, Christian Andresen, Alexandra Veremeeva, Prajna R. Lindgren, Frédéric Bouchard, Mark J. Lara, Daniel Fortier, Simon Charbonneau, Tarmo A. Virtanen, Gustaf Hugelius, Juri Palmtag, Matthias B. Siewert, William J. Riley, Charles D. Koven, and Julia Boike
Earth Syst. Sci. Data, 9, 317–348, https://doi.org/10.5194/essd-9-317-2017, https://doi.org/10.5194/essd-9-317-2017, 2017
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Waterbodies are abundant in Arctic permafrost lowlands. Most waterbodies are ponds with a surface area smaller than 100 x 100 m. The Permafrost Region Pond and Lake Database (PeRL) for the first time maps ponds as small as 10 x 10 m. PeRL maps can be used to document changes both by comparing them to historical and future imagery. The distribution of waterbodies in the Arctic is important to know in order to manage resources in the Arctic and to improve climate predictions in the Arctic.
Kathrin M. Keller, Sebastian Lienert, Anil Bozbiyik, Thomas F. Stocker, Olga V. Churakova (Sidorova), David C. Frank, Stefan Klesse, Charles D. Koven, Markus Leuenberger, William J. Riley, Matthias Saurer, Rolf Siegwolf, Rosemarie B. Weigt, and Fortunat Joos
Biogeosciences, 14, 2641–2673, https://doi.org/10.5194/bg-14-2641-2017, https://doi.org/10.5194/bg-14-2641-2017, 2017
Yaqiong Lu, Ian N. Williams, Justin E. Bagley, Margaret S. Torn, and Lara M. Kueppers
Geosci. Model Dev., 10, 1873–1888, https://doi.org/10.5194/gmd-10-1873-2017, https://doi.org/10.5194/gmd-10-1873-2017, 2017
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Predicting winter wheat growth in the future climate scenarios is crucial for food security. We developed a winter wheat model in the Community Land Model to better predict winter wheat growth and grain production at multiple temporal and spatial scales. We validated the model and found that the new winter wheat model improved the prediction of winter wheat growth related variables during the spring growing season but underestimated yield in regions with historically greater yields.
Andrew G. Slater, David M. Lawrence, and Charles D. Koven
The Cryosphere, 11, 989–996, https://doi.org/10.5194/tc-11-989-2017, https://doi.org/10.5194/tc-11-989-2017, 2017
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This work defines a metric for evaluation of a specific model snow process, namely, heat transfer through snow into soil. Heat transfer through snow regulates the difference in air temperature versus soil temperature. Accurate representation of the snow heat transfer process is critically important for accurate representation of the current and future state of permafrost. Utilizing this metric, we can clearly identify models that can and cannot reasonably represent snow heat transfer.
Bradley O. Christoffersen, Manuel Gloor, Sophie Fauset, Nikolaos M. Fyllas, David R. Galbraith, Timothy R. Baker, Bart Kruijt, Lucy Rowland, Rosie A. Fisher, Oliver J. Binks, Sanna Sevanto, Chonggang Xu, Steven Jansen, Brendan Choat, Maurizio Mencuccini, Nate G. McDowell, and Patrick Meir
Geosci. Model Dev., 9, 4227–4255, https://doi.org/10.5194/gmd-9-4227-2016, https://doi.org/10.5194/gmd-9-4227-2016, 2016
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We developed a plant hydraulics model for tropical forests based on established plant physiological theory, and parameterized it by conducting a pantropical hydraulic trait survey. We show that a substantial amount of trait diversity can be represented in the model by a reduced set of trait dimensions. The fully parameterized model is able capture tree-level variation in water status and improves simulations of total ecosystem transpiration, showing how to incorporate hydraulic traits in models.
Brett Raczka, Henrique F. Duarte, Charles D. Koven, Daniel Ricciuto, Peter E. Thornton, John C. Lin, and David R. Bowling
Biogeosciences, 13, 5183–5204, https://doi.org/10.5194/bg-13-5183-2016, https://doi.org/10.5194/bg-13-5183-2016, 2016
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We use carbon isotopes of CO2 to improve the performance of a land surface model, a component with earth system climate models. We found that isotope observations can provide important information related to the exchange of carbon and water from vegetation driven by environmental stress from low atmospheric moisture and nitrogen limitation. It follows that isotopes have a unique potential to improve model performance and provide insight into land surface model development.
Fang Zhao, Ning Zeng, Ghassem Asrar, Pierre Friedlingstein, Akihiko Ito, Atul Jain, Eugenia Kalnay, Etsushi Kato, Charles D. Koven, Ben Poulter, Rashid Rafique, Stephen Sitch, Shijie Shu, Beni Stocker, Nicolas Viovy, Andy Wiltshire, and Sonke Zaehle
Biogeosciences, 13, 5121–5137, https://doi.org/10.5194/bg-13-5121-2016, https://doi.org/10.5194/bg-13-5121-2016, 2016
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The increasing seasonality of atmospheric CO2 is strongly linked with enhanced land vegetation activities in the last 5 decades, for which the importance of increasing CO2, climate and land use/cover change was evaluated in single model studies (Zeng et al., 2014; Forkel et al., 2016). Here we examine the relative importance of these factors in multiple models. Our results highlight models can show similar results in some benchmarks with different underlying regional dynamics.
Xiyan Xu, William J. Riley, Charles D. Koven, Dave P. Billesbach, Rachel Y.-W. Chang, Róisín Commane, Eugénie S. Euskirchen, Sean Hartery, Yoshinobu Harazono, Hiroki Iwata, Kyle C. McDonald, Charles E. Miller, Walter C. Oechel, Benjamin Poulter, Naama Raz-Yaseef, Colm Sweeney, Margaret Torn, Steven C. Wofsy, Zhen Zhang, and Donatella Zona
Biogeosciences, 13, 5043–5056, https://doi.org/10.5194/bg-13-5043-2016, https://doi.org/10.5194/bg-13-5043-2016, 2016
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Wetlands are the largest global natural methane source. Peat-rich bogs and fens lying between 50°N and 70°N contribute 10–30% to this source. The predictive capability of the seasonal methane cycle can directly affect the estimation of global methane budget. We present multiscale methane seasonal emission by observations and modeling and find that the uncertainties in predicting the seasonal methane emissions are from the wetland extent, cold-season CH4 production and CH4 transport processes.
Chris D. Jones, Vivek Arora, Pierre Friedlingstein, Laurent Bopp, Victor Brovkin, John Dunne, Heather Graven, Forrest Hoffman, Tatiana Ilyina, Jasmin G. John, Martin Jung, Michio Kawamiya, Charlie Koven, Julia Pongratz, Thomas Raddatz, James T. Randerson, and Sönke Zaehle
Geosci. Model Dev., 9, 2853–2880, https://doi.org/10.5194/gmd-9-2853-2016, https://doi.org/10.5194/gmd-9-2853-2016, 2016
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How the carbon cycle interacts with climate will affect future climate change and how society plans emissions reductions to achieve climate targets. The Coupled Climate Carbon Cycle Model Intercomparison Project (C4MIP) is an endorsed activity of CMIP6 and aims to quantify these interactions and feedbacks in state-of-the-art climate models. This paper lays out the experimental protocol for modelling groups to follow to contribute to C4MIP. It is a contribution to the CMIP6 GMD Special Issue.
Wenli Wang, Annette Rinke, John C. Moore, Duoying Ji, Xuefeng Cui, Shushi Peng, David M. Lawrence, A. David McGuire, Eleanor J. Burke, Xiaodong Chen, Bertrand Decharme, Charles Koven, Andrew MacDougall, Kazuyuki Saito, Wenxin Zhang, Ramdane Alkama, Theodore J. Bohn, Philippe Ciais, Christine Delire, Isabelle Gouttevin, Tomohiro Hajima, Gerhard Krinner, Dennis P. Lettenmaier, Paul A. Miller, Benjamin Smith, Tetsuo Sueyoshi, and Artem B. Sherstiukov
The Cryosphere, 10, 1721–1737, https://doi.org/10.5194/tc-10-1721-2016, https://doi.org/10.5194/tc-10-1721-2016, 2016
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The winter snow insulation is a key process for air–soil temperature coupling and is relevant for permafrost simulations. Differences in simulated air–soil temperature relationships and their modulation by climate conditions are found to be related to the snow model physics. Generally, models with better performance apply multilayer snow schemes.
A. A. Ali, C. Xu, A. Rogers, R. A. Fisher, S. D. Wullschleger, E. C. Massoud, J. A. Vrugt, J. D. Muss, N. G. McDowell, J. B. Fisher, P. B. Reich, and C. J. Wilson
Geosci. Model Dev., 9, 587–606, https://doi.org/10.5194/gmd-9-587-2016, https://doi.org/10.5194/gmd-9-587-2016, 2016
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We have developed a mechanistic model of leaf utilization of nitrogen for assimilation (LUNA V1.0) to predict the photosynthetic capacities at the global scale based on the optimization of key leaf-level metabolic processes. LUNA model predicts that future climatic changes would mostly affect plant photosynthetic capabilities in high-latitude regions and that Earth system models using fixed photosynthetic capabilities are likely to substantially overestimate future global photosynthesis.
W. Wang, A. Rinke, J. C. Moore, X. Cui, D. Ji, Q. Li, N. Zhang, C. Wang, S. Zhang, D. M. Lawrence, A. D. McGuire, W. Zhang, C. Delire, C. Koven, K. Saito, A. MacDougall, E. Burke, and B. Decharme
The Cryosphere, 10, 287–306, https://doi.org/10.5194/tc-10-287-2016, https://doi.org/10.5194/tc-10-287-2016, 2016
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We use a model-ensemble approach for simulating permafrost on the Tibetan Plateau. We identify the uncertainties across models (state-of-the-art land surface models) and across methods (most commonly used methods to define permafrost).
We differentiate between uncertainties stemming from climatic driving data or from physical process parameterization, and show how these uncertainties vary seasonally and inter-annually, and how estimates are subject to the definition of permafrost used.
We differentiate between uncertainties stemming from climatic driving data or from physical process parameterization, and show how these uncertainties vary seasonally and inter-annually, and how estimates are subject to the definition of permafrost used.
S. Peng, P. Ciais, G. Krinner, T. Wang, I. Gouttevin, A. D. McGuire, D. Lawrence, E. Burke, X. Chen, B. Decharme, C. Koven, A. MacDougall, A. Rinke, K. Saito, W. Zhang, R. Alkama, T. J. Bohn, C. Delire, T. Hajima, D. Ji, D. P. Lettenmaier, P. A. Miller, J. C. Moore, B. Smith, and T. Sueyoshi
The Cryosphere, 10, 179–192, https://doi.org/10.5194/tc-10-179-2016, https://doi.org/10.5194/tc-10-179-2016, 2016
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Soil temperature change is a key indicator of the dynamics of permafrost. Using nine process-based ecosystem models with permafrost processes, a large spread of soil temperature trends across the models. Air temperature and longwave downward radiation are the main drivers of soil temperature trends. Based on an emerging observation constraint method, the total boreal near-surface permafrost area decrease comprised between 39 ± 14 × 103 and 75 ± 14 × 103 km2 yr−1 from 1960 to 2000.
Q. Zhu, W. J. Riley, J. Tang, and C. D. Koven
Biogeosciences, 13, 341–363, https://doi.org/10.5194/bg-13-341-2016, https://doi.org/10.5194/bg-13-341-2016, 2016
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Here we develop, calibrate, and test a nutrient competition model that accounts for multiple soil nutrients interacting with multiple biotic and abiotic consumers based on enzyme kinetics theory. Our model provides an ecologically consistent representation of nutrient competition appropriate for land biogeochemical models integrated in Earth system models.
G. Murray-Tortarolo, P. Friedlingstein, S. Sitch, V. J. Jaramillo, F. Murguía-Flores, A. Anav, Y. Liu, A. Arneth, A. Arvanitis, A. Harper, A. Jain, E. Kato, C. Koven, B. Poulter, B. D. Stocker, A. Wiltshire, S. Zaehle, and N. Zeng
Biogeosciences, 13, 223–238, https://doi.org/10.5194/bg-13-223-2016, https://doi.org/10.5194/bg-13-223-2016, 2016
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We modelled the carbon (C) cycle in Mexico for three different time periods: past (20th century), present (2000-2005) and future (2006-2100). We used different available products to estimate C stocks and fluxes in the country. Contrary to other current estimates, our results showed that Mexico was a C sink and this is likely to continue in the next century (unless the most extreme climate-change scenarios are reached).
C. Le Quéré, R. Moriarty, R. M. Andrew, J. G. Canadell, S. Sitch, J. I. Korsbakken, P. Friedlingstein, G. P. Peters, R. J. Andres, T. A. Boden, R. A. Houghton, J. I. House, R. F. Keeling, P. Tans, A. Arneth, D. C. E. Bakker, L. Barbero, L. Bopp, J. Chang, F. Chevallier, L. P. Chini, P. Ciais, M. Fader, R. A. Feely, T. Gkritzalis, I. Harris, J. Hauck, T. Ilyina, A. K. Jain, E. Kato, V. Kitidis, K. Klein Goldewijk, C. Koven, P. Landschützer, S. K. Lauvset, N. Lefèvre, A. Lenton, I. D. Lima, N. Metzl, F. Millero, D. R. Munro, A. Murata, J. E. M. S. Nabel, S. Nakaoka, Y. Nojiri, K. O'Brien, A. Olsen, T. Ono, F. F. Pérez, B. Pfeil, D. Pierrot, B. Poulter, G. Rehder, C. Rödenbeck, S. Saito, U. Schuster, J. Schwinger, R. Séférian, T. Steinhoff, B. D. Stocker, A. J. Sutton, T. Takahashi, B. Tilbrook, I. T. van der Laan-Luijkx, G. R. van der Werf, S. van Heuven, D. Vandemark, N. Viovy, A. Wiltshire, S. Zaehle, and N. Zeng
Earth Syst. Sci. Data, 7, 349–396, https://doi.org/10.5194/essd-7-349-2015, https://doi.org/10.5194/essd-7-349-2015, 2015
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Accurate assessment of anthropogenic carbon dioxide emissions and their redistribution among the atmosphere, ocean, and terrestrial biosphere is important to understand the global carbon cycle, support the development of climate policies, and project future climate change. We describe data sets and a methodology to quantify all major components of the global carbon budget, including their uncertainties, based on a range of data and models and their interpretation by a broad scientific community.
R. A. Fisher, S. Muszala, M. Verteinstein, P. Lawrence, C. Xu, N. G. McDowell, R. G. Knox, C. Koven, J. Holm, B. M. Rogers, A. Spessa, D. Lawrence, and G. Bonan
Geosci. Model Dev., 8, 3593–3619, https://doi.org/10.5194/gmd-8-3593-2015, https://doi.org/10.5194/gmd-8-3593-2015, 2015
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Predicting the distribution of vegetation under novel climates is important, both to understand how climate change will impact ecosystem services, but also to understand how vegetation changes might affect the carbon, energy and water cycles. Historically, predictions have been heavily dependent upon observations of existing vegetation boundaries. In this paper, we attempt to predict ecosystem boundaries from the ``bottom up'', and illustrate the complexities and promise of this approach.
C. D. Koven, J. Q. Chambers, K. Georgiou, R. Knox, R. Negron-Juarez, W. J. Riley, V. K. Arora, V. Brovkin, P. Friedlingstein, and C. D. Jones
Biogeosciences, 12, 5211–5228, https://doi.org/10.5194/bg-12-5211-2015, https://doi.org/10.5194/bg-12-5211-2015, 2015
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Terrestrial carbon feedbacks are a large uncertainty in climate change. We separate modeled feedback responses into those governed by changed carbon inputs (productivity) and changed outputs (turnover). The disaggregated responses show that both are important in controlling inter-model uncertainty. Interactions between productivity and turnover are also important, and research must focus on these interactions for more accurate projections of carbon cycle feedbacks.
M. A. Rawlins, A. D. McGuire, J. S. Kimball, P. Dass, D. Lawrence, E. Burke, X. Chen, C. Delire, C. Koven, A. MacDougall, S. Peng, A. Rinke, K. Saito, W. Zhang, R. Alkama, T. J. Bohn, P. Ciais, B. Decharme, I. Gouttevin, T. Hajima, D. Ji, G. Krinner, D. P. Lettenmaier, P. Miller, J. C. Moore, B. Smith, and T. Sueyoshi
Biogeosciences, 12, 4385–4405, https://doi.org/10.5194/bg-12-4385-2015, https://doi.org/10.5194/bg-12-4385-2015, 2015
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We used outputs from nine models to better understand land-atmosphere CO2 exchanges across Northern Eurasia over the period 1960-1990. Model estimates were assessed against independent ground and satellite measurements. We find that the models show a weakening of the CO2 sink over time; the models tend to overestimate respiration, causing an underestimate in NEP; the model range in regional NEP is twice the multimodel mean. Residence time for soil carbon decreased, amid a gain in carbon storage.
C. Le Quéré, R. Moriarty, R. M. Andrew, G. P. Peters, P. Ciais, P. Friedlingstein, S. D. Jones, S. Sitch, P. Tans, A. Arneth, T. A. Boden, L. Bopp, Y. Bozec, J. G. Canadell, L. P. Chini, F. Chevallier, C. E. Cosca, I. Harris, M. Hoppema, R. A. Houghton, J. I. House, A. K. Jain, T. Johannessen, E. Kato, R. F. Keeling, V. Kitidis, K. Klein Goldewijk, C. Koven, C. S. Landa, P. Landschützer, A. Lenton, I. D. Lima, G. Marland, J. T. Mathis, N. Metzl, Y. Nojiri, A. Olsen, T. Ono, S. Peng, W. Peters, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. E. Salisbury, U. Schuster, J. Schwinger, R. Séférian, J. Segschneider, T. Steinhoff, B. D. Stocker, A. J. Sutton, T. Takahashi, B. Tilbrook, G. R. van der Werf, N. Viovy, Y.-P. Wang, R. Wanninkhof, A. Wiltshire, and N. Zeng
Earth Syst. Sci. Data, 7, 47–85, https://doi.org/10.5194/essd-7-47-2015, https://doi.org/10.5194/essd-7-47-2015, 2015
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Carbon dioxide (CO2) emissions from human activities (burning fossil fuels and cement production, deforestation and other land-use change) are set to rise again in 2014.
This study (updated yearly) makes an accurate assessment of anthropogenic CO2 emissions and their redistribution between the atmosphere, ocean, and terrestrial biosphere in order to better understand the global carbon cycle, support the development of climate policies, and project future climate change.
R. G. Knox, M. Longo, A. L. S. Swann, K. Zhang, N. M. Levine, P. R. Moorcroft, and R. L. Bras
Hydrol. Earth Syst. Sci., 19, 241–273, https://doi.org/10.5194/hess-19-241-2015, https://doi.org/10.5194/hess-19-241-2015, 2015
G. Hugelius, J. Strauss, S. Zubrzycki, J. W. Harden, E. A. G. Schuur, C.-L. Ping, L. Schirrmeister, G. Grosse, G. J. Michaelson, C. D. Koven, J. A. O'Donnell, B. Elberling, U. Mishra, P. Camill, Z. Yu, J. Palmtag, and P. Kuhry
Biogeosciences, 11, 6573–6593, https://doi.org/10.5194/bg-11-6573-2014, https://doi.org/10.5194/bg-11-6573-2014, 2014
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This study provides an updated estimate of organic carbon stored in the northern permafrost region. The study includes estimates for carbon in soils (0 to 3 m depth) and deeper sediments in river deltas and the Yedoma region. We find that field data is still scarce from many regions. Total estimated carbon storage is ~1300 Pg with an uncertainty range of between 1100 and 1500 Pg. Around 800 Pg carbon is perennially frozen, equivalent to all carbon dioxide currently in the Earth's atmosphere.
C. Le Quéré, G. P. Peters, R. J. Andres, R. M. Andrew, T. A. Boden, P. Ciais, P. Friedlingstein, R. A. Houghton, G. Marland, R. Moriarty, S. Sitch, P. Tans, A. Arneth, A. Arvanitis, D. C. E. Bakker, L. Bopp, J. G. Canadell, L. P. Chini, S. C. Doney, A. Harper, I. Harris, J. I. House, A. K. Jain, S. D. Jones, E. Kato, R. F. Keeling, K. Klein Goldewijk, A. Körtzinger, C. Koven, N. Lefèvre, F. Maignan, A. Omar, T. Ono, G.-H. Park, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. Schwinger, J. Segschneider, B. D. Stocker, T. Takahashi, B. Tilbrook, S. van Heuven, N. Viovy, R. Wanninkhof, A. Wiltshire, and S. Zaehle
Earth Syst. Sci. Data, 6, 235–263, https://doi.org/10.5194/essd-6-235-2014, https://doi.org/10.5194/essd-6-235-2014, 2014
G. Hugelius, J. G. Bockheim, P. Camill, B. Elberling, G. Grosse, J. W. Harden, K. Johnson, T. Jorgenson, C. D. Koven, P. Kuhry, G. Michaelson, U. Mishra, J. Palmtag, C.-L. Ping, J. O'Donnell, L. Schirrmeister, E. A. G. Schuur, Y. Sheng, L. C. Smith, J. Strauss, and Z. Yu
Earth Syst. Sci. Data, 5, 393–402, https://doi.org/10.5194/essd-5-393-2013, https://doi.org/10.5194/essd-5-393-2013, 2013
R. G. Knox, M. Longo, A. L. S. Swann, K. Zhang, N. M. Levine, P. R. Moorcroft, and R. L. Bras
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-10-15295-2013, https://doi.org/10.5194/hessd-10-15295-2013, 2013
Preprint withdrawn
C. D. Koven, W. J. Riley, Z. M. Subin, J. Y. Tang, M. S. Torn, W. D. Collins, G. B. Bonan, D. M. Lawrence, and S. C. Swenson
Biogeosciences, 10, 7109–7131, https://doi.org/10.5194/bg-10-7109-2013, https://doi.org/10.5194/bg-10-7109-2013, 2013
J. Y. Tang, W. J. Riley, C. D. Koven, and Z. M. Subin
Geosci. Model Dev., 6, 127–140, https://doi.org/10.5194/gmd-6-127-2013, https://doi.org/10.5194/gmd-6-127-2013, 2013
Related subject area
Biogeosciences
Simulating the drought response of European tree species with the dynamic vegetation model LPJ-GUESS (v4.1, 97c552c5)
pyVPRM: a next-generation vegetation photosynthesis and respiration model for the post-MODIS era
Emulating grid-based forest carbon dynamics using machine learning: an LPJ-GUESS v4.1.1 application
ELM2.1-XGBfire1.0: improving wildfire prediction by integrating a machine learning fire model in a land surface model
Development and assessment of the physical–biogeochemical ocean regional model in the Northwest Pacific: NPRT v1.0 (ROMS v3.9–TOPAZ v2.0)
Estimation of above- and below-ground ecosystem parameters for DVM-DOS-TEM v0.7.0 using MADS v1.7.3
Alquimia v1.0: a generic interface to biogeochemical codes – a tool for interoperable development, prototyping and benchmarking for multiphysics simulators
Soil nitrous oxide emissions from global land ecosystems and their drivers within the LPJ-GUESS model (v4.1)
Parameterization toolbox for a physical–biogeochemical model compatible with FABM – a case study: the coupled 1D GOTM–ECOSMO E2E for the Sylt–Rømø Bight, North Sea
H2MV (v1.0): global physically constrained deep learning water cycle model with vegetation
NN-TOC v1: global prediction of total organic carbon in marine sediments using deep neural networks
China Wildfire Emission Dataset (ChinaWED v1) for the period 2012–2022
Process-based modeling of solar-induced chlorophyll fluorescence with VISIT-SIF version 1.0
Implementing a process-based representation of soil water movement in a second-generation dynamic vegetation model: application to dryland ecosystems (LPJ-GUESS-RE v1.0)
Including the phosphorus cycle into the LPJ-GUESS dynamic global vegetation model (v4.1, r10994) – global patterns and temporal trends of N and P primary production limitation
A comprehensive land-surface vegetation model for multi-stream data assimilation, D&B v1.0
Sources of uncertainty in the SPITFIRE global fire model: development of LPJmL-SPITFIRE1.9 and directions for future improvements
CROMES v1.0: A flexible CROp Model Emulator Suite for climate impact assessment
Spatially varying parameters improve carbon cycle modeling in the Amazon rainforest with ORCHIDEE r8849
The unicellular NUM v.0.91: a trait-based plankton model evaluated in two contrasting biogeographic provinces
FESOM2.1-REcoM3-MEDUSA2: an ocean–sea ice–biogeochemistry model coupled to a sediment model
Satellite-based modeling of wetland methane emissions on a global scale (SatWetCH4 1.0)
Representing high-latitude deep carbon in the pre-industrial state of the ORCHIDEE-MICT land surface model (r8704)
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling
A trait-based model to describe plant community dynamics in managed grasslands (GrasslandTraitSim.jl v1.0.0)
An improved model for air–sea exchange of elemental mercury in MITgcm-ECCOv4-Hg: the role of surfactants and waves
BOATSv2: new ecological and economic features improve simulations of high seas catch and effort
A dynamical process-based model for quantifying global agricultural ammonia emissions – AMmonia–CLIMate v1.0 (AMCLIM v1.0) – Part 1: Land module for simulating emissions from synthetic fertilizer use
Data-Informed Inversion Model (DIIM): a framework to retrieve marine optical constituents in the BOUSSOLE site using a three-stream irradiance model
Simulating Ips typographus L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627
Biological nitrogen fixation of natural and agricultural vegetation simulated with LPJmL 5.7.9
BIOPERIANT12: a mesoscale resolving coupled physics-biogeochemical model for the Southern Ocean
Learning from conceptual models – a study of the emergence of cooperation towards resource protection in a social–ecological system
TROLL 4.0: representing water and carbon fluxes, leaf phenology and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 1: Model description
The biogeochemical model Biome-BGCMuSo v6.2 provides plausible and accurate simulations of the carbon cycle in central European beech forests
TROLL 4.0: representing water and carbon fluxes, leaf phenology, and intraspecific trait variation in a mixed-species individual-based forest dynamics model – Part 2: Model evaluation for two Amazonian sites
Sunburned plankton: Ultraviolet radiation inhibition of phytoplankton photosynthesis in the Community Earth System Model version 2
DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology
Impacts of land-use change on biospheric carbon: an oriented benchmark using the ORCHIDEE land surface model
Implementing the iCORAL (version 1.0) coral reef CaCO3 production module in the iLOVECLIM climate model
Assimilation of carbonyl sulfide (COS) fluxes within the adjoint-based data assimilation system – Nanjing University Carbon Assimilation System (NUCAS v1.0)
Quantifying the role of ozone-caused damage to vegetation in the Earth system: a new parameterization scheme for photosynthetic and stomatal responses
Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models
Exploring the potential of history matching for land surface model calibration
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Using deep learning to integrate paleoclimate and global biogeochemistry over the Phanerozoic Eon
Modelling boreal forest's mineral soil and peat C dynamics with the Yasso07 model coupled with the Ricker moisture modifier
In silico calculation of soil pH by SCEPTER v1.0
Simple process-led algorithms for simulating habitats (SPLASH v.2.0): robust calculations of water and energy fluxes
Benjamin F. Meyer, João P. Darela-Filho, Konstantin Gregor, Allan Buras, Qiao-Lin Gu, Andreas Krause, Daijun Liu, Phillip Papastefanou, Sijeh Asuk, Thorsten E. E. Grams, Christian S. Zang, and Anja Rammig
Geosci. Model Dev., 18, 4643–4666, https://doi.org/10.5194/gmd-18-4643-2025, https://doi.org/10.5194/gmd-18-4643-2025, 2025
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Climate change has increased the likelihood of drought events across Europe, potentially threatening the European forest carbon sink. Dynamic vegetation models with mechanistic plant hydraulic architecture are needed to model these developments. We evaluate the plant hydraulic architecture version of LPJ-GUESS and show its ability to capture species-specific evapotranspiration responses to drought and to reproduce flux observations of both gross primary production and evapotranspiration.
Theo Glauch, Julia Marshall, Christoph Gerbig, Santiago Botía, Michał Gałkowski, Sanam N. Vardag, and André Butz
Geosci. Model Dev., 18, 4713–4742, https://doi.org/10.5194/gmd-18-4713-2025, https://doi.org/10.5194/gmd-18-4713-2025, 2025
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The Vegetation Photosynthesis and Respiration Model (VPRM) estimates carbon exchange between the atmosphere and biosphere by modeling gross primary production and respiration using satellite data and weather variables. Our new version, pyVPRM, supports diverse satellite products like Sentinel-2, MODIS, VIIRS, and new land cover maps, enabling high spatial and temporal resolution. This improves flux estimates, especially in complex landscapes, and ensures continuity as MODIS nears decommissioning.
Carolina Natel, David Martín Belda, Peter Anthoni, Neele Haß, Sam Rabin, and Almut Arneth
Geosci. Model Dev., 18, 4317–4333, https://doi.org/10.5194/gmd-18-4317-2025, https://doi.org/10.5194/gmd-18-4317-2025, 2025
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We developed fast machine learning models to predict forest regrowth and carbon dynamics under climate change. These models mimic the outputs of a complex vegetation model but run 95 % faster, enabling global analyses and supporting climate solutions in large modeling frameworks such as LandSyMM.
Ye Liu, Huilin Huang, Sing-Chun Wang, Tao Zhang, Donghui Xu, and Yang Chen
Geosci. Model Dev., 18, 4103–4117, https://doi.org/10.5194/gmd-18-4103-2025, https://doi.org/10.5194/gmd-18-4103-2025, 2025
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This study integrates machine learning with a land surface model to improve wildfire predictions in North America. Traditional models struggle with accurately simulating burned areas due to simplified processes. By combining the predictive power of machine learning with a land model, our hybrid framework better captures fire dynamics. This approach enhances our understanding of wildfire behavior and aids in developing more effective climate and fire management strategies.
Daehyuk Kim, Hyun-Chae Jung, Jae-Hong Moon, and Na-Hyeon Lee
Geosci. Model Dev., 18, 3941–3964, https://doi.org/10.5194/gmd-18-3941-2025, https://doi.org/10.5194/gmd-18-3941-2025, 2025
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Physical–biogeochemical ocean global models are required to analyze difficult oceanic environmental systems. To accurately understand the physical–biogeochemical processes at the regional scale, physical and biogeochemical models were coupled at a high resolution. The results successfully simulated the seasonal variations of chlorophyll and nutrients, particularly in the marginal seas, which were not captured by global models. The developed model is an important tool for studying physical–biogeochemical processes.
Elchin E. Jafarov, Hélène Genet, Velimir V. Vesselinov, Valeria Briones, Aiza Kabeer, Andrew L. Mullen, Benjamin Maglio, Tobey Carman, Ruth Rutter, Joy Clein, Chu-Chun Chang, Dogukan Teber, Trevor Smith, Joshua M. Rady, Christina Schädel, Jennifer D. Watts, Brendan M. Rogers, and Susan M. Natali
Geosci. Model Dev., 18, 3857–3875, https://doi.org/10.5194/gmd-18-3857-2025, https://doi.org/10.5194/gmd-18-3857-2025, 2025
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This study improves how we tune ecosystem models to reflect carbon and nitrogen storage in Arctic soils. By comparing model outputs with data from a black spruce forest in Alaska, we developed a clearer, more efficient method of matching observations. This is a key step towards understanding how Arctic ecosystems may respond to warming and release carbon, helping make future climate predictions more reliable.
Sergi Molins, Benjamin J. Andre, Jeffrey N. Johnson, Glenn E. Hammond, Benjamin N. Sulman, Konstantin Lipnikov, Marcus S. Day, James J. Beisman, Daniil Svyatsky, Hang Deng, Peter C. Lichtner, Carl I. Steefel, and J. David Moulton
Geosci. Model Dev., 18, 3241–3263, https://doi.org/10.5194/gmd-18-3241-2025, https://doi.org/10.5194/gmd-18-3241-2025, 2025
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Developing scientific software and making sure it functions properly requires a significant effort. As we advance our understanding of natural systems, however, there is the need to develop yet more complex models and codes. In this work, we present a piece of software that facilitates this work, specifically with regard to reactive processes. Existing tried-and-true codes are made available via this new interface, freeing up resources to focus on the new aspects of the problems at hand.
Jianyong Ma, Almut Arneth, Benjamin Smith, Peter Anthoni, Xu-Ri, Peter Eliasson, David Wårlind, Martin Wittenbrink, and Stefan Olin
Geosci. Model Dev., 18, 3131–3155, https://doi.org/10.5194/gmd-18-3131-2025, https://doi.org/10.5194/gmd-18-3131-2025, 2025
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Nitrous oxide (N2O) is a powerful greenhouse gas mainly released from natural and agricultural soils. This study examines how global soil N2O emissions changed from 1961 to 2020 and identifies key factors driving these changes using an ecological model. The findings highlight croplands as the largest source, with factors like fertilizer use and climate change enhancing emissions. Rising CO2 levels, however, can partially mitigate N2O emissions through increased plant nitrogen uptake.
Hoa Nguyen, Ute Daewel, Neil Banas, and Corinna Schrum
Geosci. Model Dev., 18, 2961–2982, https://doi.org/10.5194/gmd-18-2961-2025, https://doi.org/10.5194/gmd-18-2961-2025, 2025
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Parameterization is key in modeling to reproduce observations well but is often done manually. This study presents a particle-swarm-optimizer-based toolbox for marine ecosystem models, compatible with the Framework for Aquatic Biogeochemical Models, thus enhancing its reusability. Applied to the Sylt ecosystem, the toolbox effectively (1) identified multiple parameter sets that matched observations well, providing different insights into ecosystem dynamics, and (2) optimized model complexity.
Zavud Baghirov, Martin Jung, Markus Reichstein, Marco Körner, and Basil Kraft
Geosci. Model Dev., 18, 2921–2943, https://doi.org/10.5194/gmd-18-2921-2025, https://doi.org/10.5194/gmd-18-2921-2025, 2025
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We use an innovative approach to studying the Earth's water cycle by integrating advanced machine learning techniques with a traditional water cycle model. Our model is designed to learn from observational data, with a particular emphasis on understanding the influence of vegetation on water movement. By closely aligning with real-world observations, our model offers new possibilities for enhancing our understanding of the water cycle and its interactions with vegetation.
Naveenkumar Parameswaran, Everardo González, Ewa Burwicz-Galerne, Malte Braack, and Klaus Wallmann
Geosci. Model Dev., 18, 2521–2544, https://doi.org/10.5194/gmd-18-2521-2025, https://doi.org/10.5194/gmd-18-2521-2025, 2025
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Our research uses deep learning to predict organic carbon stocks in ocean sediments, which is crucial for understanding their role in the global carbon cycle. By analysing over 22 000 samples and various seafloor characteristics, our model gives more accurate results than traditional methods. We estimate that the top 10 cm of ocean sediments hold about 156 Pg of carbon. This work enhances carbon stock estimates and helps plan future sampling strategies to better understand oceanic carbon burial.
Zhengyang Lin, Ling Huang, Hanqin Tian, Anping Chen, and Xuhui Wang
Geosci. Model Dev., 18, 2509–2520, https://doi.org/10.5194/gmd-18-2509-2025, https://doi.org/10.5194/gmd-18-2509-2025, 2025
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The China Wildfire Emission Dataset (ChinaWED v1) estimated wildfire emissions in China during 2012–2022 as 78.13 Tg CO2, 279.47 Gg CH4, and 6.26 Gg N2O annually. Agricultural fires dominated emissions, while forest and grassland emissions decreased. Seasonal peaks occurred in late spring, with hotspots in northeast, southwest, and east China. The model emphasizes the importance of using localized emission factors and high-resolution fire estimates for accurate assessments.
Tatsuya Miyauchi, Makoto Saito, Hibiki M. Noda, Akihiko Ito, Tomomichi Kato, and Tsuneo Matsunaga
Geosci. Model Dev., 18, 2329–2347, https://doi.org/10.5194/gmd-18-2329-2025, https://doi.org/10.5194/gmd-18-2329-2025, 2025
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Solar-induced chlorophyll fluorescence (SIF) is an effective indicator for monitoring photosynthetic activity. This paper introduces VISIT-SIF, a biogeochemical model developed based on the Vegetation Integrative Simulator for Trace gases (VISIT) to represent satellite-observed SIF. Our simulations reproduced the global distribution and seasonal variations in observed SIF. VISIT-SIF helps to improve photosynthetic processes through a combination of biogeochemical modeling and observed SIF.
Wim Verbruggen, David Wårlind, Stéphanie Horion, Félicien Meunier, Hans Verbeeck, and Guy Schurgers
EGUsphere, https://doi.org/10.5194/egusphere-2025-1259, https://doi.org/10.5194/egusphere-2025-1259, 2025
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We improved the representation of soil water movement in a state-of-the-art dynamic vegetation model. This is especially important for dry ecosystems, as they are often driven by changes in soil water availability. We showed that this update resulted in a generally better match with observations, and that the updated model is more sensitive to soil texture. This updated model will help scientists to better understand the future of dry ecosystems under climate change.
Mateus Dantas de Paula, Matthew Forrest, David Warlind, João Paulo Darela Filho, Katrin Fleischer, Anja Rammig, and Thomas Hickler
Geosci. Model Dev., 18, 2249–2274, https://doi.org/10.5194/gmd-18-2249-2025, https://doi.org/10.5194/gmd-18-2249-2025, 2025
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Our study maps global nitrogen (N) and phosphorus (P) availability and how they changed from 1901 to 2018. We find that tropical regions are mostly P-limited, while temperate and boreal areas face N limitations. Over time, P limitation increased, especially in the tropics, while N limitation decreased. These shifts are key to understanding global plant growth and carbon storage, highlighting the importance of including P dynamics in ecosystem models.
Wolfgang Knorr, Matthew Williams, Tea Thum, Thomas Kaminski, Michael Voßbeck, Marko Scholze, Tristan Quaife, T. Luke Smallman, Susan C. Steele-Dunne, Mariette Vreugdenhil, Tim Green, Sönke Zaehle, Mika Aurela, Alexandre Bouvet, Emanuel Bueechi, Wouter Dorigo, Tarek S. El-Madany, Mirco Migliavacca, Marika Honkanen, Yann H. Kerr, Anna Kontu, Juha Lemmetyinen, Hannakaisa Lindqvist, Arnaud Mialon, Tuuli Miinalainen, Gaétan Pique, Amanda Ojasalo, Shaun Quegan, Peter J. Rayner, Pablo Reyes-Muñoz, Nemesio Rodríguez-Fernández, Mike Schwank, Jochem Verrelst, Songyan Zhu, Dirk Schüttemeyer, and Matthias Drusch
Geosci. Model Dev., 18, 2137–2159, https://doi.org/10.5194/gmd-18-2137-2025, https://doi.org/10.5194/gmd-18-2137-2025, 2025
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When it comes to climate change, the land surface is where the vast majority of impacts happen. The task of monitoring those impacts across the globe is formidable and must necessarily rely on satellites – at a significant cost: the measurements are only indirect and require comprehensive physical understanding. We have created a comprehensive modelling system that we offer to the research community to explore how satellite data can be better exploited to help us capture the changes that happen on our lands.
Luke Oberhagemann, Maik Billing, Werner von Bloh, Markus Drüke, Matthew Forrest, Simon P. K. Bowring, Jessica Hetzer, Jaime Ribalaygua Batalla, and Kirsten Thonicke
Geosci. Model Dev., 18, 2021–2050, https://doi.org/10.5194/gmd-18-2021-2025, https://doi.org/10.5194/gmd-18-2021-2025, 2025
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Under climate change, the conditions necessary for wildfires to form are occurring more frequently in many parts of the world. To help predict how wildfires will change in future, global fire models are being developed. We analyze and further develop one such model, SPITFIRE. Our work identifies and corrects sources of substantial bias in the model that are important to the global fire modelling field. With this analysis and these developments, we help to provide a basis for future improvements.
Christian Folberth, Artem Baklanov, Nikolay Khabarov, Thomas Oberleitner, Juraj Balkovič, and Rastislav Skalský
EGUsphere, https://doi.org/10.5194/egusphere-2025-862, https://doi.org/10.5194/egusphere-2025-862, 2025
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Global gridded crop models (GGCMs) are important tools in agricultural climate impact assessments but computationally costly. An emergent approach to derive crop productivity estimates similar to those from GGCMs are emulators that mimic the original model, but typically with considerable bias. Here we present a modelling package that trains emulators with very high accuracy and high computational gain, providing a basis for more comprehensive scenario assessments.
Lei Zhu, Philippe Ciais, Yitong Yao, Daniel Goll, Sebastiaan Luyssaert, Isabel Martínez Cano, Arthur Fendrich, Laurent Li, Hui Yang, Sassan Saatchi, and Wei Li
EGUsphere, https://doi.org/10.5194/egusphere-2025-397, https://doi.org/10.5194/egusphere-2025-397, 2025
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This study enhances the accuracy of modeling the carbon dynamics of Amazon rainforest by optimizing key model parameters based on satellite data. Using spatially varying parameters for tree mortality and photosynthesis, we improved predictions of biomass, productivity, and tree mortality. Our findings highlight the critical role of wood density and water availability in forest processes, offering insights to refine global carbon cycle models.
Trine Frisbæk Hansen, Donald Eugene Canfield, Ken Haste Andersen, and Christian Jannik Bjerrum
Geosci. Model Dev., 18, 1895–1916, https://doi.org/10.5194/gmd-18-1895-2025, https://doi.org/10.5194/gmd-18-1895-2025, 2025
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We describe and test the size-based Nutrient-Unicellular-Multicellular model, which defines unicellular plankton using a single set of parameters, on a eutrophic and oligotrophic ecosystem. The results demonstrate that both sites can be modeled with similar parameters and robust performance over a wide range of parameters. The study shows that the model is useful for non-experts and applicable for modeling ecosystems with limited data. It holds promise for evolutionary and deep-time climate models.
Ying Ye, Guy Munhoven, Peter Köhler, Martin Butzin, Judith Hauck, Özgür Gürses, and Christoph Völker
Geosci. Model Dev., 18, 977–1000, https://doi.org/10.5194/gmd-18-977-2025, https://doi.org/10.5194/gmd-18-977-2025, 2025
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Many biogeochemistry models assume all material reaching the seafloor is remineralized and returned to solution, which is sufficient for studies on short-term climate change. Under long-term climate change, the carbon storage in sediments slows down carbon cycling and influences feedbacks in the atmosphere–ocean–sediment system. This paper describes the coupling of a sediment model to an ocean biogeochemistry model and presents results under the pre-industrial climate and under CO2 perturbation.
Juliette Bernard, Elodie Salmon, Marielle Saunois, Shushi Peng, Penélope Serrano-Ortiz, Antoine Berchet, Palingamoorthy Gnanamoorthy, Joachim Jansen, and Philippe Ciais
Geosci. Model Dev., 18, 863–883, https://doi.org/10.5194/gmd-18-863-2025, https://doi.org/10.5194/gmd-18-863-2025, 2025
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Despite their importance, uncertainties remain in the evaluation of the drivers of temporal variability of methane emissions from wetlands on a global scale. Here, a simplified global model is developed, taking advantage of advances in remote-sensing data and in situ observations. The model reproduces the large spatial and temporal patterns of emissions, albeit with limitations in the tropics due to data scarcity. This model, while simple, can provide valuable insights into sensitivity analyses.
Yi Xi, Philippe Ciais, Dan Zhu, Chunjing Qiu, Yuan Zhang, Shushi Peng, Gustaf Hugelius, Simon P. K. Bowring, Daniel S. Goll, and Ying-Ping Wang
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-206, https://doi.org/10.5194/gmd-2024-206, 2025
Revised manuscript accepted for GMD
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Including high-latitude deep carbon is critical for projecting future soil carbon emissions, yet it’s absent in most land surface models. Here we propose a new carbon accumulation protocol by integrating deep carbon from Yedoma deposits and representing the observed history of peat carbon formation in ORCHIDEE-MICT. Our results show an additional 157 PgC in present-day Yedoma deposits and a 1–5 m shallower peat depth, 43 % less passive soil carbon in peatlands against the convention protocol.
Christian Poppe Terán, Bibi S. Naz, Harry Vereecken, Roland Baatz, Rosie A. Fisher, and Harrie-Jan Hendricks Franssen
Geosci. Model Dev., 18, 287–317, https://doi.org/10.5194/gmd-18-287-2025, https://doi.org/10.5194/gmd-18-287-2025, 2025
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Carbon and water exchanges between the atmosphere and the land surface contribute to water resource availability and climate change mitigation. Land surface models, like the Community Land Model version 5 (CLM5), simulate these. This study finds that CLM5 and other data sets underestimate the magnitudes of and variability in carbon and water exchanges for the most abundant plant functional types compared to observations. It provides essential insights for further research into these processes.
Katherine A. Muller, Peishi Jiang, Glenn Hammond, Tasneem Ahmadullah, Hyun-Seob Song, Ravi Kukkadapu, Nicholas Ward, Madison Bowe, Rosalie K. Chu, Qian Zhao, Vanessa A. Garayburu-Caruso, Alan Roebuck, and Xingyuan Chen
Geosci. Model Dev., 17, 8955–8968, https://doi.org/10.5194/gmd-17-8955-2024, https://doi.org/10.5194/gmd-17-8955-2024, 2024
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The new Lambda-PFLOTRAN workflow incorporates organic matter chemistry into reaction networks to simulate aerobic respiration and biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow in a Jupyter notebook interface that digests raw organic matter chemistry data via Fourier transform ion cyclotron resonance mass spectrometry, develops a representative reaction network, and completes a biogeochemical simulation with the open-source, parallel-reactive-flow, and transport code PFLOTRAN.
Felix Nößler, Thibault Moulin, Oksana Buzhdygan, Britta Tietjen, and Felix May
EGUsphere, https://doi.org/10.5194/egusphere-2024-3798, https://doi.org/10.5194/egusphere-2024-3798, 2024
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To predict the response of grassland plant communities to management and climate change, we developed the computer model GrasslandTraitSim.jl. Unlike other models, it uses measurable plant traits such as height, leaf thinness, and root structure as inputs, rather than hard-to-measure species data. This allows realistic simulation of many species. The model tracks daily changes in above- and below-ground biomass, plant height, and soil water, linking plant community composition to biomass supply.
Ling Li, Peipei Wu, Peng Zhang, Shaojian Huang, and Yanxu Zhang
Geosci. Model Dev., 17, 8683–8695, https://doi.org/10.5194/gmd-17-8683-2024, https://doi.org/10.5194/gmd-17-8683-2024, 2024
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In this study, we incorporate sea surfactants and wave-breaking processes into MITgcm-ECCOv4-Hg. The updated model shows increased fluxes in high-wind-speed and high-wave regions and vice versa, enhancing spatial heterogeneity. It shows that elemental mercury (Hg0) transfer velocity is more sensitive to wind speed. These findings may elucidate the discrepancies in previous estimations and offer insights into global Hg cycling.
Jerome Guiet, Daniele Bianchi, Kim J. N. Scherrer, Ryan F. Heneghan, and Eric D. Galbraith
Geosci. Model Dev., 17, 8421–8454, https://doi.org/10.5194/gmd-17-8421-2024, https://doi.org/10.5194/gmd-17-8421-2024, 2024
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The BiOeconomic mArine Trophic Size-spectrum (BOATSv2) model dynamically simulates global commercial fish populations and their coupling with fishing activity, as emerging from environmental and economic drivers. New features, including separate pelagic and demersal populations, iron limitation, and spatial variation of fishing costs and management, improve the accuracy of high seas fisheries. The updated model code is available to simulate both historical and future scenarios.
Jize Jiang, David S. Stevenson, and Mark A. Sutton
Geosci. Model Dev., 17, 8181–8222, https://doi.org/10.5194/gmd-17-8181-2024, https://doi.org/10.5194/gmd-17-8181-2024, 2024
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A special model called AMmonia–CLIMate (AMCLIM) has been developed to understand and calculate NH3 emissions from fertilizer use and also taking into account how the environment influences these NH3 emissions. It is estimated that about 17 % of applied N in fertilizers was lost due to NH3 emissions. Hot and dry conditions and regions with high-pH soils can expect higher NH3 emissions.
Carlos Enmanuel Soto López, Fabio Anselmi, Mirna Gharbi Dit Kacem, and Paolo Lazzari
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-174, https://doi.org/10.5194/gmd-2024-174, 2024
Revised manuscript accepted for GMD
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Our goal was to use an analytical expression to estimate the density of optical constituents, allowing us to have an interpretable formulation consistent with the laws of physics. We focused on a probabilistic approach, optimizing the model and retrieving quantities with their respective uncertainty. Considering future application to Big Data, we also explored a Neural Network based method, retrieving computationally efficient estimates, maintaining consistency with the analytical expression.
Guillaume Marie, Jina Jeong, Hervé Jactel, Gunnar Petter, Maxime Cailleret, Matthew J. McGrath, Vladislav Bastrikov, Josefine Ghattas, Bertrand Guenet, Anne Sofie Lansø, Kim Naudts, Aude Valade, Chao Yue, and Sebastiaan Luyssaert
Geosci. Model Dev., 17, 8023–8047, https://doi.org/10.5194/gmd-17-8023-2024, https://doi.org/10.5194/gmd-17-8023-2024, 2024
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This research looks at how climate change influences forests, and particularly how altered wind and insect activities could make forests emit instead of absorb carbon. We have updated a land surface model called ORCHIDEE to better examine the effect of bark beetles on forest health. Our findings suggest that sudden events, such as insect outbreaks, can dramatically affect carbon storage, offering crucial insights into tackling climate change.
Stephen Björn Wirth, Johanna Braun, Jens Heinke, Sebastian Ostberg, Susanne Rolinski, Sibyll Schaphoff, Fabian Stenzel, Werner von Bloh, Friedhelm Taube, and Christoph Müller
Geosci. Model Dev., 17, 7889–7914, https://doi.org/10.5194/gmd-17-7889-2024, https://doi.org/10.5194/gmd-17-7889-2024, 2024
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We present a new approach to modelling biological nitrogen fixation (BNF) in the Lund–Potsdam–Jena managed Land dynamic global vegetation model. While in the original approach BNF depended on actual evapotranspiration, the new approach considers soil water content and temperature, vertical root distribution, the nitrogen (N) deficit and carbon (C) costs. The new approach improved simulated BNF compared to the scientific literature and the model ability to project future C and N cycle dynamics.
Nicolette Chang, Sarah-Anne Nicholson, Marcel du Plessis, Alice D. Lebehot, Thulwaneng Mashifane, Tumelo C. Moalusi, N. Precious Mongwe, and Pedro M. S. Monteiro
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-182, https://doi.org/10.5194/gmd-2024-182, 2024
Revised manuscript accepted for GMD
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Mesoscale features (10's to 100's of km) in the Southern Ocean (SO) are crucial for global heat and carbon transport, but often unresolved in models due to high computational costs. To address this source of uncertainty, we use a regional, NEMO model of the SO at 8 km resolution with coupled ocean, ice, and biogeochemistry, BIOPERIANT12. This serves as an experimental platform to explore physical-biogeochemical interactions, model parameters/formulations, and configuring future models.
Saeed Harati-Asl, Liliana Perez, and Roberto Molowny-Horas
Geosci. Model Dev., 17, 7423–7443, https://doi.org/10.5194/gmd-17-7423-2024, https://doi.org/10.5194/gmd-17-7423-2024, 2024
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Social–ecological systems are the subject of many sustainability problems. Because of the complexity of these systems, we must be careful when intervening in them; otherwise we may cause irreversible damage. Using computer models, we can gain insight about these complex systems without harming them. In this paper we describe how we connected an ecological model of forest insect infestation with a social model of cooperation and simulated an intervention measure to save a forest from infestation.
Isabelle Maréchaux, Fabian Jörg Fischer, Sylvain Schmitt, and Jérôme Chave
EGUsphere, https://doi.org/10.5194/egusphere-2024-3104, https://doi.org/10.5194/egusphere-2024-3104, 2024
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We describe TROLL 4.0, a simulator of forest dynamics that represents trees in a virtual space at one-meter resolution. Tree birth, growth, death and the underlying physiological processes such as carbon assimilation, water transpiration and leaf phenology depend on plant traits that are measured in the field for many individuals and species. The model is thus capable of jointly simulating forest structure, diversity and ecosystem functioning, a major challenge in modelling vegetation dynamics.
Katarína Merganičová, Ján Merganič, Laura Dobor, Roland Hollós, Zoltán Barcza, Dóra Hidy, Zuzana Sitková, Pavel Pavlenda, Hrvoje Marjanovic, Daniel Kurjak, Michal Bošel'a, Doroteja Bitunjac, Maša Zorana Ostrogović Sever, Jiří Novák, Peter Fleischer, and Tomáš Hlásny
Geosci. Model Dev., 17, 7317–7346, https://doi.org/10.5194/gmd-17-7317-2024, https://doi.org/10.5194/gmd-17-7317-2024, 2024
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We developed a multi-objective calibration approach leading to robust parameter values aiming to strike a balance between their local precision and broad applicability. Using the Biome-BGCMuSo model, we tested the calibrated parameter sets for simulating European beech forest dynamics across large environmental gradients. Leveraging data from 87 plots and five European countries, the results demonstrated reasonable local accuracy and plausible large-scale productivity responses.
Sylvain Schmitt, Fabian Fischer, James Ball, Nicolas Barbier, Marion Boisseaux, Damien Bonal, Benoit Burban, Xiuzhi Chen, Géraldine Derroire, Jeremy Lichstein, Daniela Nemetschek, Natalia Restrepo-Coupe, Scott Saleska, Giacomo Sellan, Philippe Verley, Grégoire Vincent, Camille Ziegler, Jérôme Chave, and Isabelle Maréchaux
EGUsphere, https://doi.org/10.5194/egusphere-2024-3106, https://doi.org/10.5194/egusphere-2024-3106, 2024
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We evaluate the capability of TROLL 4.0, a simulator of forest dynamics, to represent tropical forest structure, diversity and functioning in two Amazonian forests. Evaluation data include forest inventories, carbon and water fluxes between the forest and the atmosphere, and leaf area and canopy height from remote-sensing products. The model realistically predicts the structure and composition, and the seasonality of carbon and water fluxes at both sites.
Joshua Coupe, Nicole S. Lovenduski, Luise S. Gleason, Michael N. Levy, Kristen Krumhardt, Keith Lindsay, Charles Bardeen, Clay Tabor, Cheryl Harrison, Kenneth G. MacLeod, Siddhartha Mitra, and Julio Sepúlveda
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-94, https://doi.org/10.5194/gmd-2024-94, 2024
Revised manuscript accepted for GMD
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We develop a new feature in the atmosphere and ocean components of the Community Earth System Model version 2. We have implemented ultraviolet (UV) radiation inhibition of photosynthesis of four marine phytoplankton functional groups represented in the Marine Biogeochemistry Library. The new feature is tested with varying levels of UV radiation. The new feature will enable an analysis of an asteroid impact’s effect on the ozone layer and how that affects the base of the marine food web.
Guohua Liu, Mirco Migliavacca, Christian Reimers, Basil Kraft, Markus Reichstein, Andrew D. Richardson, Lisa Wingate, Nicolas Delpierre, Hui Yang, and Alexander J. Winkler
Geosci. Model Dev., 17, 6683–6701, https://doi.org/10.5194/gmd-17-6683-2024, https://doi.org/10.5194/gmd-17-6683-2024, 2024
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Our study employs long short-term memory (LSTM) networks to model canopy greenness and phenology, integrating meteorological memory effects. The LSTM model outperforms traditional methods, enhancing accuracy in predicting greenness dynamics and phenological transitions across plant functional types. Highlighting the importance of multi-variate meteorological memory effects, our research pioneers unlock the secrets of vegetation phenology responses to climate change with deep learning techniques.
Thi Lan Anh Dinh, Daniel Goll, Philippe Ciais, and Ronny Lauerwald
Geosci. Model Dev., 17, 6725–6744, https://doi.org/10.5194/gmd-17-6725-2024, https://doi.org/10.5194/gmd-17-6725-2024, 2024
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The study assesses the performance of the dynamic global vegetation model (DGVM) ORCHIDEE in capturing the impact of land-use change on carbon stocks across Europe. Comparisons with observations reveal that the model accurately represents carbon fluxes and stocks. Despite the underestimations in certain land-use conversions, the model describes general trends in soil carbon response to land-use change, aligning with the site observations.
Nathaelle Bouttes, Lester Kwiatkowski, Manon Berger, Victor Brovkin, and Guy Munhoven
Geosci. Model Dev., 17, 6513–6528, https://doi.org/10.5194/gmd-17-6513-2024, https://doi.org/10.5194/gmd-17-6513-2024, 2024
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Coral reefs are crucial for biodiversity, but they also play a role in the carbon cycle on long time scales of a few thousand years. To better simulate the future and past evolution of coral reefs and their effect on the global carbon cycle, hence on atmospheric CO2 concentration, it is necessary to include coral reefs within a climate model. Here we describe the inclusion of coral reef carbonate production in a carbon–climate model and its validation in comparison to existing modern data.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
Fang Li, Zhimin Zhou, Samuel Levis, Stephen Sitch, Felicity Hayes, Zhaozhong Feng, Peter B. Reich, Zhiyi Zhao, and Yanqing Zhou
Geosci. Model Dev., 17, 6173–6193, https://doi.org/10.5194/gmd-17-6173-2024, https://doi.org/10.5194/gmd-17-6173-2024, 2024
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A new scheme is developed to model the surface ozone damage to vegetation in regional and global process-based models. Based on 4210 data points from ozone experiments, it accurately reproduces statistically significant linear or nonlinear photosynthetic and stomatal responses to ozone in observations for all vegetation types. It also enables models to implicitly capture the variability in plant ozone tolerance and the shift among species within a vegetation type.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
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A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Nina Raoult, Simon Beylat, James M. Salter, Frédéric Hourdin, Vladislav Bastrikov, Catherine Ottlé, and Philippe Peylin
Geosci. Model Dev., 17, 5779–5801, https://doi.org/10.5194/gmd-17-5779-2024, https://doi.org/10.5194/gmd-17-5779-2024, 2024
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We use computer models to predict how the land surface will respond to climate change. However, these complex models do not always simulate what we observe in real life, limiting their effectiveness. To improve their accuracy, we use sophisticated statistical and computational techniques. We test a technique called history matching against more common approaches. This method adapts well to these models, helping us better understand how they work and therefore how to make them more realistic.
Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, and Stefano Ciavatta
Geosci. Model Dev., 17, 5619–5639, https://doi.org/10.5194/gmd-17-5619-2024, https://doi.org/10.5194/gmd-17-5619-2024, 2024
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To understand and predict the ocean’s capacity for carbon sequestration, its ability to supply food, and its response to climate change, we need the best possible estimate of its physical and biogeochemical properties. This is obtained through data assimilation which blends numerical models and observations. We present the Ensemble and Assimilation Tool (EAT), a flexible and efficient test bed that allows any scientist to explore and further develop the state of the art in data assimilation.
Dongyu Zheng, Andrew S. Merdith, Yves Goddéris, Yannick Donnadieu, Khushboo Gurung, and Benjamin J. W. Mills
Geosci. Model Dev., 17, 5413–5429, https://doi.org/10.5194/gmd-17-5413-2024, https://doi.org/10.5194/gmd-17-5413-2024, 2024
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This study uses a deep learning method to upscale the time resolution of paleoclimate simulations to 1 million years. This improved resolution allows a climate-biogeochemical model to more accurately predict climate shifts. The method may be critical in developing new fully continuous methods that are able to be applied over a moving continental surface in deep time with high resolution at reasonable computational expense.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Yoshiki Kanzaki, Isabella Chiaravalloti, Shuang Zhang, Noah J. Planavsky, and Christopher T. Reinhard
Geosci. Model Dev., 17, 4515–4532, https://doi.org/10.5194/gmd-17-4515-2024, https://doi.org/10.5194/gmd-17-4515-2024, 2024
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Soil pH is one of the most commonly measured agronomical and biogeochemical indices, mostly reflecting exchangeable acidity. Explicit simulation of both porewater and bulk soil pH is thus crucial to the accurate evaluation of alkalinity required to counteract soil acidification and the resulting capture of anthropogenic carbon dioxide through the enhanced weathering technique. This has been enabled by the updated reactive–transport SCEPTER code and newly developed framework to simulate soil pH.
David Sandoval, Iain Colin Prentice, and Rodolfo L. B. Nóbrega
Geosci. Model Dev., 17, 4229–4309, https://doi.org/10.5194/gmd-17-4229-2024, https://doi.org/10.5194/gmd-17-4229-2024, 2024
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Numerous estimates of water and energy balances depend on empirical equations requiring site-specific calibration, posing risks of "the right answers for the wrong reasons". We introduce novel first-principles formulations to calculate key quantities without requiring local calibration, matching predictions from complex land surface models.
Cited articles
Alencar, A., Asner, G. P., Knapp, D., and Zarin, D.: Temporal variability of forest fires in eastern Amazonia, Ecol. Appl., 21, 2397–2412, https://doi.org/10.1890/10-1168.1, 2011.
Andrews, P. L.: The Rothermel surface fire spread model and associated developments: A comprehensive explanation, U. S. Department of Agriculture, Forest Service, Rocky Mountain Research Station, Ft. Collins, CO, https://doi.org/10.2737/RMRS-GTR-371, 2018.
Aragão, L. E. O. C., Anderson, L. O., Fonseca, M. G., Rosan, T. M., Vedovato, L. B., Wagner, F. H., Silva, C. V. J., Silva Junior, C. H. L., Arai, E., Aguiar, A. P., Barlow, J., Berenguer, E., Deeter, M. N., Domingues, L. G., Gatti, L., Gloor, M., Malhi, Y., Marengo, J. A., Miller, J. B., Phillips, O. L., and Saatchi, S.: 21st Century drought-related fires counteract the decline of Amazon deforestation carbon emissions, Nat. Commun., 9, 536, https://doi.org/10.1038/s41467-017-02771-y, 2018.
Archibald, S., Lehmann, C. E. R., Gómez-Dans, J. L., and Bradstock, R. A.: Defining pyromes and global syndromes of fire regimes, P. Natl. Acad. Sci. USA, 110, 6442–6447, https://doi.org/10.1073/pnas.1211466110, 2013.
Arellano, G., Zuleta, D., and Davies, S. J.: Tree death and damage: A standardized protocol for frequent surveys in tropical forests, J. Veg. Sci., 32, e12981, https://doi.org/10.1111/jvs.12981, 2021.
Arora, V. K. and Boer, G. J.: Fire as an interactive component of dynamic vegetation models: Fire in Dynamic Vegetation Models, J. Geophys. Res., 110, G02008, https://doi.org/10.1029/2005JG000042, 2005.
Artaxo, P., Hansson, H.-C., Andreae, M. O., Bäck, J., Alves, E. G., Barbosa, H. M. J., Bender, F., Bourtsoukidis, E., Carbone, S., Chi, J., Decesari, S., Després, V. R., Ditas, F., Ezhova, E., Fuzzi, S., Hasselquist, N. J., Heintzenberg, J., Holanda, B. A., Guenther, A., Hakola, H., Heikkinen, L., Kerminen, V.-M., Kontkanen, J., Krejci, R., Kulmala, M., Lavric, J. V., de Leeuw, G., Lehtipalo, K., Machado, L. A. T., McFiggans, G., Franco, M. A. M., Meller, B. B., Morais, F. G., Mohr, C., Morgan, W., Nilsson, M. B., Peichl, M., Petäjä, T., Praß, M., Pöhlker, C., Pöhlker, M. L., Pöschl, U., Von Randow, C., Riipinen, I., Rinne, J., V. Rizzo, L., Rosenfeld, D., Dias, M. A. F. S., Sogacheva, L., Stier, P., Swietlicki, E., Sörgel, M., Tunved, P., Virkkula, A., Wang, J., Weber, B., Yáñez-Serrano, A. M., Zieger, P., Mikhailov, E., Smith, J. N., and Kesselmeier, J.: Tropical and Boreal Forest – Atmosphere Interactions: A Review, Tellus B, 74, 24–163, https://doi.org/10.16993/tellusb.34, 2022a.
Artaxo, P., Hansson, H. C., Machado, L. A. T., and Rizzo, L. V.: Tropical forests are crucial in regulating the climate on Earth, PLOS Clim., 1, e0000054, https://doi.org/10.1371/journal.pclm.0000054, 2022b.
Baccini, A., Walker, W., Carvalho, L., Farina, M., Sulla-Menashe, D., and Houghton, R. A.: Tropical forests are a net carbon source based on aboveground measurements of gain and loss, Science, 358, 230–234, https://doi.org/10.1126/science.aam5962, 2017.
Balch, J. K., Nepstad, D. C., Brando, P. M., Curran, L. M., Portela, O., De Carvalho, O., and Lefebvre, P.: Negative fire feedback in a transitional forest of southeastern Amazonia: Negative Fire Feedback in Southeast Amazonia, Glob. Change Biol., 14, 2276–2287, https://doi.org/10.1111/j.1365-2486.2008.01655.x, 2008.
Balch, J. K., Brando, P. M., Nepstad, D. C., Coe, M. T., Silvério, D., Massad, T. J., Davidson, E. A., Lefebvre, P., Oliveira-Santos, C., Rocha, W., Cury, R. T. S., Parsons, A., and Carvalho, K. S.: The Susceptibility of Southeastern Amazon Forests to Fire: Insights from a Large-Scale Burn Experiment, BioScience, 65, 893–905, https://doi.org/10.1093/biosci/biv106, 2015.
Baudena, M., Dekker, S. C., van Bodegom, P. M., Cuesta, B., Higgins, S. I., Lehsten, V., Reick, C. H., Rietkerk, M., Scheiter, S., Yin, Z., Zavala, M. A., and Brovkin, V.: Forests, savannas, and grasslands: bridging the knowledge gap between ecology and Dynamic Global Vegetation Models, Biogeosciences, 12, 1833–1848, https://doi.org/10.5194/bg-12-1833-2015, 2015.
Blanco, C. C., Scheiter, S., Sosinski, E., Fidelis, A., Anand, M., and Pillar, V. D.: Feedbacks between vegetation and disturbance processes promote long-term persistence of forest–grassland mosaics in south Brazil, Ecol. Model., 291, 224–232, https://doi.org/10.1016/j.ecolmodel.2014.07.024, 2014.
Blyth, E. M., Arora, V. K., Clark, D. B., Dadson, S. J., De Kauwe, M. G., Lawrence, D. M., Melton, J. R., Pongratz, J., Turton, R. H., Yoshimura, K., and Yuan, H.: Advances in Land Surface Modelling, Curr. Clim. Change Rep., 7, 45–71, https://doi.org/10.1007/s40641-021-00171-5, 2021.
Bonan, G. B., Patton, E. G., Finnigan, J. J., Baldocchi, D. D., and Harman, I. N.: Moving beyond the incorrect but useful paradigm: reevaluating big-leaf and multilayer plant canopies to model biosphere-atmosphere fluxes – a review, Agr. Forest Meteorol., 306, 108435, https://doi.org/10.1016/j.agrformet.2021.108435, 2021.
Bond, W. J.: What Limits Trees in C4 Grasslands and Savannas?, Annu. Rev. Ecol. Evol. S., 39, 641–659, https://doi.org/10.1146/annurev.ecolsys.39.110707.173411, 2008.
Bond, W. J. and Midgley, G. F.: Carbon dioxide and the uneasy interactions of trees and savannah grasses, Philos. T. Roy. Soc. B, 367, 601–612, https://doi.org/10.1098/rstb.2011.0182, 2012a.
Bond, W. J. and Midgley, J. J.: Fire and the Angiosperm Revolutions, Int. J. Plant Sci., 173, 569–583, https://doi.org/10.1086/665819, 2012b.
Bond, W. J., Midgley, G. F., and Woodward, F. I.: The importance of low atmospheric CO2 and fire in promoting the spread of grasslands and savannas: FIRE, LOW CO2 and TREES, Glob. Change Biol., 9, 973–982, https://doi.org/10.1046/j.1365-2486.2003.00577.x, 2003.
Bond, W. J., Woodward, F. I., and Midgley, G. F.: The global distribution of ecosystems in a world without fire, New Phytol., 165, 525–538, https://doi.org/10.1111/j.1469-8137.2004.01252.x, 2005.
Bowman, D. M. J. S., Kolden, C. A., Abatzoglou, J. T., Johnston, F. H., van der Werf, G. R., and Flannigan, M.: Vegetation fires in the Anthropocene, Nature Reviews Earth & Environment, 1, 500–515, https://doi.org/10.1038/s43017-020-0085-3, 2020.
Bradshaw, L. S., Deeming, J. E., Burgan, R. E., and Cohen, J. D.: The 1978 National Fire-Danger Rating System: technical documentation. General Technical Report INT-169, U.S. Department of Agriculture, Forest Service, Intermountain Forest and Range Experiment Station, Ogden, UT, 44 pp., https://doi.org/10.2737/INT-GTR-169, 1984.
Brando, P. M., Nepstad, D. C., Balch, J. K., Bolker, B., Christman, M. C., Coe, M., and Putz, F. E.: Fire-induced tree mortality in a neotropical forest: the roles of bark traits, tree size, wood density and fire behavior, Glob. Change Biol., 18, 630–641, https://doi.org/10.1111/j.1365-2486.2011.02533.x, 2012.
Brando, P. M., Oliveria-Santos, C., Rocha, W., Cury, R., and Coe, M. T.: Effects of experimental fuel additions on fire intensity and severity: unexpected carbon resilience of a neotropical forest, Glob. Change Biol., 22, 2516–2525, https://doi.org/10.1111/gcb.13172, 2016.
Brando, P. M., Silvério, D., Maracahipes-Santos, L., Oliveira-Santos, C., Levick, S. R., Coe, M. T., Migliavacca, M., Balch, J. K., Macedo, M. N., Nepstad, D. C., Maracahipes, L., Davidson, E., Asner, G., Kolle, O., and Trumbore, S.: Prolonged tropical forest degradation due to compounding disturbances: Implications for CO2 and H2O fluxes, Glob. Change Biol., 25, 2855–2868, https://doi.org/10.1111/gcb.14659, 2019.
Brando, P. M., Soares-Filho, B., Rodrigues, L., Assunção, A., Morton, D., Tuchschneider, D., Fernandes, E. C. M., Macedo, M. N., Oliveira, U., and Coe, M. T.: The gathering firestorm in southern Amazonia, Sci. Adv., 6, eaay1632, https://doi.org/10.1126/sciadv.aay1632, 2020.
Bucini, G. and Hanan, N. P.: A continental-scale analysis of tree cover in African savannas, Global Ecol. Biogeogr., 16, 593–605, https://doi.org/10.1111/j.1466-8238.2007.00325.x, 2007.
Buis, G. M., Blair, J. M., Burkepile, D. E., Burns, C. E., Chamberlain, A. J., Chapman, P. L., Collins, S. L., Fynn, R. W. S., Govender, N., Kirkman, K. P., Smith, M. D., and Knapp, A. K.: Controls of Aboveground Net Primary Production in Mesic Savanna Grasslands: An Inter-Hemispheric Comparison, Ecosystems, 12, 982–995, https://doi.org/10.1007/s10021-009-9273-1, 2009.
Buotte, P. C., Koven, C. D., Xu, C., Shuman, J. K., Goulden, M. L., Levis, S., Katz, J., Ding, J., Ma, W., Robbins, Z., and Kueppers, L. M.: Capturing functional strategies and compositional dynamics in vegetation demographic models, Biogeosciences, 18, 4473–4490, https://doi.org/10.5194/bg-18-4473-2021, 2021.
Burrows, G. E.: Epicormic strand structure in Angophora, Eucalyptus and Lophostemon (Myrtaceae) – implications for fire resistance and recovery, New Phytol., 153, 111–131, https://doi.org/10.1046/j.0028-646X.2001.00299.x, 2002.
Burton, C., Kelley, D. I., Jones, C. D., Betts, R. A., Cardoso, M., and Anderson, L.: South American fires and their impacts on ecosystems increase with continued emissions, Climate Resilience, 1, e8, https://doi.org/10.1002/cli2.8, 2022.
Chambers, J. Q., Higuchi, N., Schimel, J. P., Ferreira, L. V., and Melack, J. M.: Decomposition and carbon cycling of dead trees in tropical forests of the central Amazon, Oecologia, 122, 380–388, https://doi.org/10.1007/s004420050044, 2000.
Chave, J., Muller-Landau, H. C., Baker, T. R., Easdale, T. A., ter Steege, H., and Webb, C. O.: Regional and Phylogenetic Variation of Wood Density Across 2456 Neotropical Tree Species, Ecol. Appl., 16, 2356–2367, https://doi.org/10.1890/1051-0761(2006)016[2356:RAPVOW]2.0.CO;2, 2006.
Chen, Y.-Y., Gardiner, B., Pasztor, F., Blennow, K., Ryder, J., Valade, A., Naudts, K., Otto, J., McGrath, M. J., Planque, C., and Luyssaert, S.: Simulating damage for wind storms in the land surface model ORCHIDEE-CAN (revision 4262), Geosci. Model Dev., 11, 771–791, https://doi.org/10.5194/gmd-11-771-2018, 2018.
Chuvieco, E., Pettinari, M. L., Koutsias, N., Forkel, M., Hantson, S., and Turco, M.: Human and climate drivers of global biomass burning variability, Sci. Total Environ., 779, 146361, https://doi.org/10.1016/j.scitotenv.2021.146361, 2021.
Cochrane, M. A.: Fire science for rainforests, Nature, 421, 913–919, https://doi.org/10.1038/nature01437, 2003.
Cochrane, M. A., Alencar, A., Schulze, M. D., Souza, C. M., Nepstad, D. C., Lefebvre, P., and Davidson, E. A.: Positive Feedbacks in the Fire Dynamic of Closed Canopy Tropical Forests, Science, 284, 1832–1835, https://doi.org/10.1126/science.284.5421.1832, 1999.
Collier, N., Hoffman, F. M., Lawrence, D. M., Keppel-Aleks, G., Koven, C. D., Riley, W. J., Mu, M., and Randerson, J. T.: The International Land Model Benchmarking (ILAMB) System: Design, Theory, and Implementation, J. Adv. Model. Earth Sy., 10, 2731–2754, https://doi.org/10.1029/2018MS001354, 2018.
Compo, G. P., Whitaker, J. S., Sardeshmukh, P. D., Matsui, N., Allan, R. J., Yin, X., Gleason Jr., B. E., Vose, R. S., Rutledge, G., Bessemoulin, P., Brönnimann, S., Brunet, M., Crouthamel, R. I., Grant, A. N., Groisman, P. Y., Jones, P. D., Kruk, M. C., Kruger, A. C., Marshall, G. J., Maugeri, M., Mok, H. Y., Nordli, Ø., Ross, T. F., Trigo, R. M., Wang, X. L., Woodruff, S. D., and Worley, S. J.: The Twentieth Century Reanalysis Project, Q. J. Roy. Meteor. Soc., 137, 1–28, https://doi.org/10.1002/qj.776, 2011.
Computational and Information Systems Laboratory: Cheyenne: HPE/SGI ICE XA System (NCAR Community Computing), National Center for Atmospheric Research, Boulder, CO, https://doi.org/10.5065/D6RX99HX, 2019.
Crisp, M. D., Burrows, G. E., Cook, L. G., Thornhill, A. H., and Bowman, D. M. J. S.: Flammable biomes dominated by eucalypts originated at the Cretaceous–Palaeogene boundary, Nat. Commun., 2, 193, https://doi.org/10.1038/ncomms1191, 2011.
Daehler, C. C., Anttila, C. K., Ayres, D. R., Strong, D. R., and Bailey, J. P.: Evolution of a new ecotype of Spartina alterniflora (Poaceae) in San Francisco Bay, California, USA, Am. J. Bot., 86, 543–546, https://doi.org/10.2307/2656815, 1999.
Danabasoglu, G., Lamarque, J.-F., Bacmeister, J., Bailey, D. A., DuVivier, A. K., Edwards, J., Emmons, L. K., Fasullo, J., Garcia, R., Gettelman, A., Hannay, C., Holland, M. M., Large, W. G., Lauritzen, P. H., Lawrence, D. M., Lenaerts, J. T. M., Lindsay, K., Lipscomb, W. H., Mills, M. J., Neale, R., Oleson, K. W., Otto-Bliesner, B., Phillips, A. S., Sacks, W., Tilmes, S., Kampenhout, L., Vertenstein, M., Bertini, A., Dennis, J., Deser, C., Fischer, C., Fox-Kemper, B., Kay, J. E., Kinnison, D., Kushner, P. J., Larson, V. E., Long, M. C., Mickelson, S., Moore, J. K., Nienhouse, E., Polvani, L., Rasch, P. J., and Strand, W. G.: The Community Earth System Model Version 2 (CESM2), J. Adv. Model. Earth Sy., 12, e2019MS00191, https://doi.org/10.1029/2019MS001916, 2020.
De Faria, B. L., Staal, A., Silva, C. A., Martin, P. A., Panday, P. K., Dantas, V. L., and Silva, T.: Climate change and deforestation increase the vulnerability of Amazonian forests to post-fire grass invasion, Global Ecol. Biogeogr., 30, 2368–2381, https://doi.org/10.1111/geb.13388, 2021.
De Kauwe, M. G., Disney, M. I., Quaife, T., Lewis, P., and Williams, M.: An assessment of the MODIS collection 5 leaf area index product for a region of mixed coniferous forest, Remote Sens. Environ., 115, 767–780, https://doi.org/10.1016/j.rse.2010.11.004, 2011.
Dirmeyer, P. A., Gao, X., Zhao, M., Guo, Z., Oki, T., and Hanasaki, N.: GSWP-2: Multimodel Analysis and Implications for Our Perception of the Land Surface, B. Am. Meteorol. Soc., 87, 1381–1398, 2006.
Drüke, M., Forkel, M., von Bloh, W., Sakschewski, B., Cardoso, M., Bustamante, M., Kurths, J., and Thonicke, K.: Improving the LPJmL4-SPITFIRE vegetation–fire model for South America using satellite data, Geosci. Model Dev., 12, 5029–5054, https://doi.org/10.5194/gmd-12-5029-2019, 2019.
Eaton, J. M. and Lawrence, D.: Woody debris stocks and fluxes during succession in a dry tropical forest, Forest Ecol. Manag., 232, 46–55, https://doi.org/10.1016/j.foreco.2006.05.038, 2006.
FATES Development Team: The Functionally Assembled Terrestrial Ecosystem Simulator (FATES) (fates-spitfire-ms), Zenodo [code], https://doi.org/10.5281/zenodo.10652358, 2024.
Fidelis, A., Delgado-Cartay, M. D., Blanco, C. C., Müller, S. C., Pillar, V. D., and Pfadenhauer, J.: Fire Intensity and Severity in Brazilian Campos Grasslands, Interciencia, 35, 739–745, 2010.
Fisher, R., McDowell, N., Purves, D., Moorcroft, P., Sitch, S., Cox, P., Huntingford, C., Meir, P., and Woodward, F. I.: Assessing uncertainties in a second-generation dynamic vegetation model caused by ecological scale limitations, New Phytol., 187, 666–681, https://doi.org/10.1111/j.1469-8137.2010.03340.x, 2010.
Fisher, R. A., Muszala, S., Verteinstein, M., Lawrence, P., Xu, C., McDowell, N. G., Knox, R. G., Koven, C., Holm, J., Rogers, B. M., Spessa, A., Lawrence, D., and Bonan, G.: Taking off the training wheels: the properties of a dynamic vegetation model without climate envelopes, CLM4.5(ED), Geosci. Model Dev., 8, 3593–3619, https://doi.org/10.5194/gmd-8-3593-2015, 2015.
Fisher, R. A., Koven, C. D., Anderegg, W. R. L., Christoffersen, B. O., Dietze, M. C., Farrior, C. E., Holm, J. A., Hurtt, G. C., Knox, R. G., Lawrence, P. J., Lichstein, J. W., Longo, M., Matheny, A. M., Medvigy, D., Muller-Landau, H. C., Powell, T. L., Serbin, S. P., Sato, H., Shuman, J. K., Smith, B., Trugman, A. T., Viskari, T., Verbeeck, H., Weng, E., Xu, C., Xu, X., Zhang, T., and Moorcroft, P. R.: Vegetation demographics in Earth System Models: A review of progress and priorities, Glob. Change Biol., 24, 35–54, https://doi.org/10.1111/gcb.13910, 2018.
Forestry Canada Fire Danger Group: Development and structure of the Canadian Forest Fire Behavior Prediction System. For. Can., Ottawa, Ont. Inf. Rep. ST-X-3. 63 pp., 1992.
Forkel, M., Andela, N., Harrison, S. P., Lasslop, G., van Marle, M., Chuvieco, E., Dorigo, W., Forrest, M., Hantson, S., Heil, A., Li, F., Melton, J., Sitch, S., Yue, C., and Arneth, A.: Emergent relationships with respect to burned area in global satellite observations and fire-enabled vegetation models, Biogeosciences, 16, 57–76, https://doi.org/10.5194/bg-16-57-2019, 2019.
Fosberg, M. A. and Deeming, J. E.: Derivation of the 1- and 10-hour timelag fuel moisture calculations for fire-danger rating. Research Note RM-RN-207, USDA Forest Service, Rocky Mountain Forest and Range Experiment Station, Fort Collins, CO, 8 pp., 1971.
Giglio, L., Randerson, J. T., and van der Werf, G. R.: Analysis of daily, monthly, and annual burned area using the fourth-generation global fire emissions database (GFED4): Analysis of Burned Area, J. Geophys. Res.-Biogeo., 118, 317–328, https://doi.org/10.1002/jgrg.20042, 2013.
Gignoux, J., Clobert, J., and Menaut, J.-C.: Alternative fire resistance strategies in savanna trees, Oecologia, 110, 576–583, 1997.
Giurgevich, J. R. and Dunn, E. L.: Seasonal Patterns of CO2 and Water Vapor Exchange of the Tall and Short Height Forms of Spartina aiterniflora Loisel in a Georgia Salt Marsh, Oecologia, 43, 139–156, 1979.
Golaz, J., Caldwell, P. M., Van Roekel, L. P., Petersen, M. R., Tang, Q., Wolfe, J. D., Abeshu, G., Anantharaj, V., Asay-Davis, X. S., Bader, D. C., Baldwin, S. A., Bisht, G., Bogenschutz, P. A., Branstetter, M., Brunke, M. A., Brus, S. R., Burrows, S. M., Cameron-Smith, P. J., Donahue, A. S., Deakin, M., Easter, R. C., Evans, K. J., Feng, Y., Flanner, M., Foucar, J. G., Fyke, J. G., Griffin, B. M., Hannay, C., Harrop, B. E., Hoffman, M. J., Hunke, E. C., Jacob, R. L., Jacobsen, D. W., Jeffery, N., Jones, P. W., Keen, N. D., Klein, S. A., Larson, V. E., Leung, L. R., Li, H., Lin, W., Lipscomb, W. H., Ma, P., Mahajan, S., Maltrud, M. E., Mametjanov, A., McClean, J. L., McCoy, R. B., Neale, R. B., Price, S. F., Qian, Y., Rasch, P. J., Reeves Eyre, J. E. J., Riley, W. J., Ringler, T. D., Roberts, A. F., Roesler, E. L., Salinger, A. G., Shaheen, Z., Shi, X., Singh, B., Tang, J., Taylor, M. A., Thornton, P. E., Turner, A. K., Veneziani, M., Wan, H., Wang, H., Wang, S., Williams, D. N., Wolfram, P. J., Worley, P. H., Xie, S., Yang, Y., Yoon, J., Zelinka, M. D., Zender, C. S., Zeng, X., Zhang, C., Zhang, K., Zhang, Y., Zheng, X., Zhou, T., and Zhu, Q.: The DOE E3SM Coupled Model Version 1: Overview and Evaluation at Standard Resolution, J. Adv. Model. Earth Sy., 11, 2089–2129, https://doi.org/10.1029/2018MS001603, 2019.
Govender, N., Trollope, W. S. W., and Van Wilgen, B. W.: The effect of fire season, fire frequency, rainfall and management on fire intensity in savanna vegetation in South Africa: Fire intensity in savanna, J. Appl. Ecol., 43, 748–758, https://doi.org/10.1111/j.1365-2664.2006.01184.x, 2006.
Gross, M. F., Hardisky, M. A., Wolf, P. L., and Klemas, V.: Relationship between Aboveground and Belowground Biomass of Spartina alterniflora (Smooth Cordgrass), Estuaries, 14, 180, https://doi.org/10.2307/1351692, 1991.
Haas, O., Prentice, I. C., and Harrison, S. P.: Global environmental controls on wildfire burnt area, size, and intensity, Environ. Res. Lett., 17, 065004, https://doi.org/10.1088/1748-9326/ac6a69, 2022.
Hanan, E. J., Kennedy, M. C., Ren, J., Johnson, M. C., and Smith, A. M. S.: Missing Climate Feedbacks in Fire Models: Limitations and Uncertainties in Fuel Loadings and the Role of Decomposition in Fine Fuel Accumulation, J. Adv. Model. Earth Sy., 14, e2021MS002818, https://doi.org/10.1029/2021MS002818, 2022.
Hantson, S., Arneth, A., Harrison, S. P., Kelley, D. I., Prentice, I. C., Rabin, S. S., Archibald, S., Mouillot, F., Arnold, S. R., Artaxo, P., Bachelet, D., Ciais, P., Forrest, M., Friedlingstein, P., Hickler, T., Kaplan, J. O., Kloster, S., Knorr, W., Lasslop, G., Li, F., Mangeon, S., Melton, J. R., Meyn, A., Sitch, S., Spessa, A., van der Werf, G. R., Voulgarakis, A., and Yue, C.: The status and challenge of global fire modelling, Biogeosciences, 13, 3359–3375, https://doi.org/10.5194/bg-13-3359-2016, 2016.
Hantson, S., Kelley, D. I., Arneth, A., Harrison, S. P., Archibald, S., Bachelet, D., Forrest, M., Hickler, T., Lasslop, G., Li, F., Mangeon, S., Melton, J. R., Nieradzik, L., Rabin, S. S., Prentice, I. C., Sheehan, T., Sitch, S., Teckentrup, L., Voulgarakis, A., and Yue, C.: Quantitative assessment of fire and vegetation properties in simulations with fire-enabled vegetation models from the Fire Model Intercomparison Project, Geosci. Model Dev., 13, 3299–3318, https://doi.org/10.5194/gmd-13-3299-2020, 2020.
Haverd, V., Smith, B., Nieradzik, L., Briggs, P. R., Woodgate, W., Trudinger, C. M., Canadell, J. G., and Cuntz, M.: A new version of the CABLE land surface model (Subversion revision r4601) incorporating land use and land cover change, woody vegetation demography, and a novel optimisation-based approach to plant coordination of photosynthesis, Geosci. Model Dev., 11, 2995–3026, https://doi.org/10.5194/gmd-11-2995-2018, 2018.
Higgins, S. I. and Scheiter, S.: Atmospheric CO2 forces abrupt vegetation shifts locally, but not globally, Nature, 488, 209–212, https://doi.org/10.1038/nature11238, 2012.
Higgins, S. I., Bond, W. J., and Trollope, W. S. W.: Fire, resprouting and variability: a recipe for grass-tree coexistence in savanna, J. Ecol., 88, 213–229, https://doi.org/10.1046/j.1365-2745.2000.00435.x, 2000.
Hirota, M., Holmgren, M., Van Nes, E. H., and Scheffer, M.: Global Resilience of Tropical Forest and Savanna to Critical Transitions, Science, 334, 232–235, https://doi.org/10.1126/science.1210657, 2011.
Hoffmann, W. A.: Post-Establishment Seedling Success in the Brazilian Cerrado: A Comparison of Savanna and Forest Species, Biotropica, 32, 62–69, 2000.
Hoffmann, W. A. and Solbrig, O. T.: The role of topkill in the differential response of savanna woody species to fire, Forest Ecol. Manag., 180, 273–286, https://doi.org/10.1016/S0378-1127(02)00566-2, 2003.
Hoffmann, W. A., Orthen, B., and do Nascimento, P. K. V.: Comparative fire ecology of tropical savanna and forest trees: Fire traits of savanna and forest trees, Funct. Ecol., 17, 720–726, https://doi.org/10.1111/j.1365-2435.2003.00796.x, 2003.
Hoffmann, W. A., Adasme, R., Haridasan, M., de Carvalho, M. T., Geiger, E. L., Pereira, M. A. B., Gotsch, S. G., and Franco, A. C.: Tree topkill, not mortality, governs the dynamics of savanna–forest boundaries under frequent fire in central Brazil, Ecology, 90, 1326–1337, https://doi.org/10.1890/08-0741.1, 2009.
Hoffmann, W. A., Geiger, E. L., Gotsch, S. G., Rossatto, D. R., Silva, L. C. R., Lau, O. L., Haridasan, M., and Franco, A. C.: Ecological thresholds at the savanna-forest boundary: how plant traits, resources and fire govern the distribution of tropical biomes, Ecol. Lett., 15, 759–768, https://doi.org/10.1111/j.1461-0248.2012.01789.x, 2012.
Hoffmann, W. A., Sanders, R. W., Just, M. G., Wall, W. A., and Hohmann, M. G.: Better lucky than good: How savanna trees escape the fire trap in a variable world, Ecology, 101, e02895, https://doi.org/10.1002/ecy.2895, 2020.
Hyungjun, K.: Global Soil Wetness Project Phase 3 Atmospheric Boundary Conditions (Experiment 1), Data Integration and Analysis System (DIAS) [data set], https://doi.org/10.20783/DIAS.501, 2017.
Jain, P., Castellanos-Acuna, D., Coogan, S. C. P., Abatzoglou, J. T., and Flannigan, M. D.: Observed increases in extreme fire weather driven by atmospheric humidity and temperature, Nat. Clim. Change, 12, 63–70, https://doi.org/10.1038/s41558-021-01224-1, 2022.
Jolly, W. M., Cochrane, M. A., Freeborn, P. H., Holden, Z. A., Brown, T. J., Williamson, G. J., and Bowman, D. M. J. S.: Climate-induced variations in global wildfire danger from 1979 to 2013, Nat. Commun., 6, 7537, https://doi.org/10.1038/ncomms8537, 2015.
Jones, G. M. and Tingley, M. W.: Pyrodiversity and biodiversity: A history, synthesis, and outlook, Divers. Distrib., 28, 386–403, https://doi.org/10.1111/ddi.13280, 2022.
Jones, M. W., Abatzoglou, J. T., Veraverbeke, S., Andela, N., Lasslop, G., Forkel, M., Smith, A. J. P., Burton, C., Betts, R. A., van der Werf, G. R., Sitch, S., Canadell, J. G., Santín, C., Kolden, C., Doerr, S. H., and Le Quéré, C.: Global and Regional Trends and Drivers of Fire Under Climate Change, Rev. Geophys., 60, e2020RG000726, https://doi.org/10.1029/2020RG000726, 2022.
Jung, M., Reichstein, M., Ciais, P., Seneviratne, S. I., Sheffield, J., Goulden, M. L., Bonan, G., Cescatti, A., Chen, J., de Jeu, R., Dolman, A. J., Eugster, W., Gerten, D., Gianelle, D., Gobron, N., Heinke, J., Kimball, J., Law, B. E., Montagnani, L., Mu, Q., Mueller, B., Oleson, K., Papale, D., Richardson, A. D., Roupsard, O., Running, S., Tomelleri, E., Viovy, N., Weber, U., Williams, C., Wood, E., Zaehle, S., and Zhang, K.: Recent decline in the global land evapotranspiration trend due to limited moisture supply, Nature, 467, 951–954, https://doi.org/10.1038/nature09396, 2010.
Kattge, J., Knorr, W., Raddatz, T., and Wirth, C.: Quantifying photosynthetic capacity and its relationship to leaf nitrogen content for global-scale terrestrial biosphere models, Glob. Change Biol., 15, 976–991, https://doi.org/10.1111/j.1365-2486.2008.01744.x, 2009.
Kauffman, J. B., Cummings, D. L., and Ward, D. E.: Relationships of Fire, Biomass and Nutrient Dynamics along a Vegetation Gradient in the Brazilian Cerrado, J. Ecol., 82, 519, https://doi.org/10.2307/2261261, 1994.
Koven, C. D., Knox, R. G., Fisher, R. A., Chambers, J. Q., Christoffersen, B. O., Davies, S. J., Detto, M., Dietze, M. C., Faybishenko, B., Holm, J., Huang, M., Kovenock, M., Kueppers, L. M., Lemieux, G., Massoud, E., McDowell, N. G., Muller-Landau, H. C., Needham, J. F., Norby, R. J., Powell, T., Rogers, A., Serbin, S. P., Shuman, J. K., Swann, A. L. S., Varadharajan, C., Walker, A. P., Wright, S. J., and Xu, C.: Benchmarking and parameter sensitivity of physiological and vegetation dynamics using the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) at Barro Colorado Island, Panama, Biogeosciences, 17, 3017–3044, https://doi.org/10.5194/bg-17-3017-2020, 2020.
Lasslop, G., Thonicke, K., and Kloster, S.: SPITFIRE within the MPI Earth system model: Model development and evaluation, J. Adv. Model. Earth Sy., 6, 740–755, https://doi.org/10.1002/2013MS000284, 2014.
Lasslop, G., Hantson, S., Harrison, S. P., Bachelet, D., Burton, C., Forkel, M., Forrest, M., Li, F., Melton, J. R., Yue, C., Archibald, S., Scheiter, S., Arneth, A., Hickler, T., and Sitch, S.: Global ecosystems and fire: Multi-model assessment of fire-induced tree-cover and carbon storage reduction, Glob. Change Biol., 26, 5027–5041, https://doi.org/10.1111/gcb.15160, 2020.
Latham, D. and Williams, E.: Lightning and Forest Fires, in: Forest Fires. Behavior and Ecological Effects, Academic Press, San Diego, 376–418, https://doi.org/10.1016/B978-012386660-8/50013-1, 2001.
Lawrence, D., Coe, M., Walker, W., Verchot, L., and Vandecar, K.: The Unseen Effects of Deforestation: Biophysical Effects on Climate, Front. For. Glob. Change, 5, 756115, https://doi.org/10.3389/ffgc.2022.756115, 2022.
Lawrence, D. M., Fisher, R. A., Koven, C. D., Oleson, K. W., Swenson, S. C., Bonan, G., Collier, N., Ghimire, B., van Kampenhout, L., Kennedy, D., Kluzek, E., Lawrence, P. J., Li, F., Li, H., Lombardozzi, D., Riley, W. J., Sacks, W. J., Shi, M., Vertenstein, M., Wieder, W. R., Xu, C., Ali, A. A., Badger, A. M., Bisht, G., van den Broeke, M., Brunke, M. A., Burns, S. P., Buzan, J., Clark, M., Craig, A., Dahlin, K., Drewniak, B., Fisher, J. B., Flanner, M., Fox, A. M., Gentine, P., Hoffman, F., Keppel-Aleks, G., Knox, R., Kumar, S., Lenaerts, J., Leung, L. R., Lipscomb, W. H., Lu, Y., Pandey, A., Pelletier, J. D., Perket, J., Randerson, J. T., Ricciuto, D. M., Sanderson, B. M., Slater, A., Subin, Z. M., Tang, J., Thomas, R. Q., Val Martin, M., and Zeng, X.: The Community Land Model Version 5: Description of New Features, Benchmarking, and Impact of Forcing Uncertainty, J. Adv. Model. Earth Sy., 11, 4245–4287, https://doi.org/10.1029/2018MS001583, 2019.
Lehmann, C. E. R., Archibald, S. A., Hoffmann, W. A., and Bond, W. J.: Deciphering the distribution of the savanna biome, New Phytol., 191, 197–209, https://doi.org/10.1111/j.1469-8137.2011.03689.x, 2011.
Li, F., Zeng, X. D., and Levis, S.: A process-based fire parameterization of intermediate complexity in a Dynamic Global Vegetation Model, Biogeosciences, 9, 2761–2780, https://doi.org/10.5194/bg-9-2761-2012, 2012.
Li, F., Levis, S., and Ward, D. S.: Quantifying the role of fire in the Earth system – Part 1: Improved global fire modeling in the Community Earth System Model (CESM1), Biogeosciences, 10, 2293–2314, https://doi.org/10.5194/bg-10-2293-2013, 2013.
Maréchaux, I. and Chave, J.: An individual-based forest model to jointly simulate carbon and tree diversity in Amazonia: description and applications, Ecol. Monogr., 87, 632–664, https://doi.org/10.1002/ecm.1271, 2017.
McLauchlan, K. K., Higuera, P. E., Miesel, J., Rogers, B. M., Schweitzer, J., Shuman, J. K., Tepley, A. J., Varner, J. M., Veblen, T. T., Adalsteinsson, S. A., Balch, J. K., Baker, P., Batllori, E., Bigio, E., Brando, P., Cattau, M., Chipman, M. L., Coen, J., Crandall, R., Daniels, L., Enright, N., Gross, W. S., Harvey, B. J., Hatten, J. A., Hermann, S., Hewitt, R. E., Kobziar, L. N., Landesmann, J. B., Loranty, M. M., Maezumi, S. Y., Mearns, L., Moritz, M., Myers, J. A., Pausas, J. G., Pellegrini, A. F. A., Platt, W. J., Roozeboom, J., Safford, H., Santos, F., Scheller, R. M., Sherriff, R. L., Smith, K. G., Smith, M. D., and Watts, A. C.: Fire as a fundamental ecological process: Research advances and frontiers, J. Ecol., 108, 2047–2069, https://doi.org/10.1111/1365-2745.13403, 2020.
Morton, D. C., Le Page, Y., DeFries, R., Collatz, G. J., and Hurtt, G. C.: Understorey fire frequency and the fate of burned forests in southern Amazonia, Philos. T. Roy. Soc. B, 368, 20120163, https://doi.org/10.1098/rstb.2012.0163, 2013.
Naudts, K., Ryder, J., McGrath, M. J., Otto, J., Chen, Y., Valade, A., Bellasen, V., Berhongaray, G., Bönisch, G., Campioli, M., Ghattas, J., De Groote, T., Haverd, V., Kattge, J., MacBean, N., Maignan, F., Merilä, P., Penuelas, J., Peylin, P., Pinty, B., Pretzsch, H., Schulze, E. D., Solyga, D., Vuichard, N., Yan, Y., and Luyssaert, S.: A vertically discretised canopy description for ORCHIDEE (SVN r2290) and the modifications to the energy, water and carbon fluxes, Geosci. Model Dev., 8, 2035–2065, https://doi.org/10.5194/gmd-8-2035-2015, 2015.
Needham, J. F., Arellano, G., Davies, S. J., Fisher, R. A., Hammer, V., Knox, R. G., Mitre, D., Muller-Landau, H. C., Zuleta, D., and Koven, C. D.: Tree crown damage and its effects on forest carbon cycling in a tropical forest, Glob. Change Biol., 28, 5560–5574, https://doi.org/10.1111/gcb.16318, 2022.
Nepstad, D. C., Stickler, C. M., Filho, B. S., and Merry, F.: Interactions among Amazon land use, forests and climate: prospects for a near-term forest tipping point, Philos. T. Roy. Soc. B, 363, 1737–1746, https://doi.org/10.1098/rstb.2007.0036, 2008.
Nobre, C. A., Sampaio, G., Borma, L. S., Castilla-Rubio, J. C., Silva, J. S., and Cardoso, M.: Land-use and climate change risks in the Amazon and the need of a novel sustainable development paradigm, P. Natl. Acad. Sci. USA, 113, 10759–10768, https://doi.org/10.1073/pnas.1605516113, 2016.
Pausas, J. G. and Keeley, J. E.: Abrupt Climate-Independent Fire Regime Changes, Ecosystems, 17, 1109–1120, https://doi.org/10.1007/s10021-014-9773-5, 2014.
Pellegrini, A. F. A., Anderegg, W. R. L., Paine, C. E. T., Hoffmann, W. A., Kartzinel, T., Rabin, S. S., Sheil, D., Franco, A. C., and Pacala, S. W.: Convergence of bark investment according to fire and climate structures ecosystem vulnerability to future change, Ecol. Lett., 20, 307–316, https://doi.org/10.1111/ele.12725, 2017.
Peterson, D. L. and Ryan, K.: Modeling postfire conifer mortality for long-range planning, Environ. Manage., 10, 797–808, 1986.
Pueyo, S., De Alencastro Graça, P. M. L., Barbosa, R. I., Cots, R., Cardona, E., and Fearnside, P. M.: Testing for criticality in ecosystem dynamics: the case of Amazonian rainforest and savanna fire: Criticality in Amazonia, Ecol. Lett., 13, 793–802, https://doi.org/10.1111/j.1461-0248.2010.01497.x, 2010.
Rabin, S. S., Melton, J. R., Lasslop, G., Bachelet, D., Forrest, M., Hantson, S., Kaplan, J. O., Li, F., Mangeon, S., Ward, D. S., Yue, C., Arora, V. K., Hickler, T., Kloster, S., Knorr, W., Nieradzik, L., Spessa, A., Folberth, G. A., Sheehan, T., Voulgarakis, A., Kelley, D. I., Prentice, I. C., Sitch, S., Harrison, S., and Arneth, A.: The Fire Modeling Intercomparison Project (FireMIP), phase 1: experimental and analytical protocols with detailed model descriptions, Geosci. Model Dev., 10, 1175–1197, https://doi.org/10.5194/gmd-10-1175-2017, 2017.
Radabaugh, K. R., Powell C. E., Bociu I., Clark B. C., and Moyer R. P.: Plant size metrics and organic carbon content of Florida salt marsh vegetation, Wetl. Ecol. Manag., 25, 443–455, 2017.
Ratnam, J., Bond, W. J., Fensham, R. J., Hoffmann, W. A., Archibald, S., Lehmann, C. E. R., Anderson, M. T., Higgins, S. I., and Sankaran, M.: When is a “forest” a savanna, and why does it matter?: When is a “forest” a savanna, Global Ecol. Biogeogr., 20, 653–660, https://doi.org/10.1111/j.1466-8238.2010.00634.x, 2011.
Reis, C. R., Jackson, T. D., Gorgens, E. B., Dalagnol, R., Jucker, T., Nunes, M. H., Ometto, J. P., Aragão, L. E. O. C., Rodriguez, L. C. E., and Coomes, D. A.: Forest disturbance and growth processes are reflected in the geographical distribution of large canopy gaps across the Brazilian Amazon, J. Ecol., 110, 2971–2983, https://doi.org/10.1111/1365-2745.14003, 2022.
Rothermel, R. C.: A mathematical model for predicting fire spread in wildland fuels, Res. Pap. INT-115, USDA Forest Service Intermountain Forest and Range Experiment Station, Ogden, UT, 40 pp., 1972.
Rothermel, R. C.: How to predict the spread and intensity of forest and range fires, U. S. Department of Agriculture, Forest Service, Intermountain Forest and Range Experiment Station, Ogden, UT, https://doi.org/10.2737/INT-GTR-143, 1983.
Ryan, C. M. and Williams, M.: How does fire intensity and frequency affect miombo woodland tree populations and biomass?, Ecol. Appl., 21, 48–60, https://doi.org/10.1890/09-1489.1, 2011.
Saatchi, S. S., Harris, N. L., Brown, S., Lefsky, M., Mitchard, E. T. A., Salas, W., Zutta, B. R., Buermann, W., Lewis, S. L., Hagen, S., Petrova, S., White, L., Silman, M., and Morel, A.: Benchmark map of forest carbon stocks in tropical regions across three continents, P. Natl. Acad. Sci. USA, 108, 9899–9904, https://doi.org/10.1073/pnas.1019576108, 2011.
Sankaran, M., Hanan, N. P., Scholes, R. J., Ratnam, J., Augustine, D. J., Cade, B. S., Gignoux, J., Higgins, S. I., Le Roux, X., Ludwig, F., Ardo, J., Banyikwa, F., Bronn, A., Bucini, G., Caylor, K. K., Coughenour, M. B., Diouf, A., Ekaya, W., Feral, C. J., February, E. C., Frost, P. G. H., Hiernaux, P., Hrabar, H., Metzger, K. L., Prins, H. H. T., Ringrose, S., Sea, W., Tews, J., Worden, J., and Zambatis, N.: Determinants of woody cover in African savannas, Nature, 438, 846–849, https://doi.org/10.1038/nature04070, 2005.
Sankaran, M., Ratnam, J., and Hanan, N.: Woody cover in African savannas: the role of resources, fire and herbivory, Global Ecol. Biogeogr., 17, 236–245, https://doi.org/10.1111/j.1466-8238.2007.00360.x, 2008.
Scheiter, S. and Higgins, S. I.: Impacts of climate change on the vegetation of Africa: an adaptive dynamic vegetation modelling approach, Glob. Change Biol., 15, 2224–2246, https://doi.org/10.1111/j.1365-2486.2008.01838.x, 2009.
Scheiter, S., Higgins, S. I., Osborne, C. P., Bradshaw, C., Lunt, D., Ripley, B. S., Taylor, L. L., and Beerling, D. J.: Fire and fire-adapted vegetation promoted C4 expansion in the late Miocene, New Phytol., 195, 653–666, https://doi.org/10.1111/j.1469-8137.2012.04202.x, 2012.
Scheiter, S., Langan, L., and Higgins, S. I.: Next-generation dynamic global vegetation models: learning from community ecology, New Phytol., 198, 957–969, https://doi.org/10.1111/nph.12210, 2013.
Schubauer, J. P. and Hopkinson, C. S.: Above- and belowground emergent macrophyte production and turnover in a coastal marsh ecosystem, Georgia1: Macrophyte production, Limnol. Oceanogr., 29, 1052–1065, https://doi.org/10.4319/lo.1984.29.5.1052, 1984.
Shuman, J.: Files and scripts to support manuscript Shuman et al 2023 FATES-SPITFIRE ecosystem assembly across tropics, 1.0, NGEE Tropics Data Collection [data set], https://doi.org/10.15486/ngt/1992487, 2023.
Silva Junior, C. H. L., Aragão, L. E. O. C., Anderson, L. O., Fonseca, M. G., Shimabukuro, Y. E., Vancutsem, C., Achard, F., Beuchle, R., Numata, I., Silva, C. A., Maeda, E. E., Longo, M., and Saatchi, S. S.: Persistent collapse of biomass in Amazonian forest edges following deforestation leads to unaccounted carbon losses, Sci. Adv., 6, eaaz8360, https://doi.org/10.1126/sciadv.aaz8360, 2020.
Silvério, D. V., Brando, P. M., Balch, J. K., Putz, F. E., Nepstad, D. C., Oliveira-Santos, C., and Bustamante, M. M. C.: Testing the Amazon savannization hypothesis: fire effects on invasion of a neotropical forest by native cerrado and exotic pasture grasses, Philos. T. Roy. Soc. B, 368, 20120427, https://doi.org/10.1098/rstb.2012.0427, 2013.
Snell, J. A.: Direct estimation of surface fuel bulk density and loading in western Montana and northern Idaho, University of Montana, Missoula, MT, 1979.
Staver, A. C., Archibald, S., and Levin, S. A.: The Global Extent and Determinants of Savanna and Forest as Alternative Biome States, Science, 334, 230–232, https://doi.org/10.1126/science.1210465, 2011.
Staver, A. C., Brando, P. M., Barlow, J., Morton, D. C., Paine, C. E. T., Malhi, Y., Araujo Murakami, A., and Pasquel, J.: Thinner bark increases sensitivity of wetter Amazonian tropical forests to fire, Ecol. Lett., 23, 99–106, https://doi.org/10.1111/ele.13409, 2020.
Swann, A. L. S., Hoffman, F. M., Koven, C. D., and Randerson, J. T.: Plant responses to increasing CO2 reduce estimates of climate impacts on drought severity, P. Natl. Acad. Sci. USA, 113, 10019–10024, https://doi.org/10.1073/pnas.1604581113, 2016.
Teckentrup, L., Harrison, S. P., Hantson, S., Heil, A., Melton, J. R., Forrest, M., Li, F., Yue, C., Arneth, A., Hickler, T., Sitch, S., and Lasslop, G.: Response of simulated burned area to historical changes in environmental and anthropogenic factors: a comparison of seven fire models, Biogeosciences, 16, 3883–3910, https://doi.org/10.5194/bg-16-3883-2019, 2019.
Thonicke, K., Spessa, A., Harrison, S. P., Dong, L., and Carmona-Moreno, C.: The influence of vegetation, fire spread and fire behaviour on biomass burning and trace gas emissions: results from a process-based model, Biogeosciences, 7, 1991–2011, 2010.
Touma, D., Stevenson, S., Lehner, F., and Coats, S.: Human-driven greenhouse gas and aerosol emissions cause distinct regional impacts on extreme fire weather, Nat. Commun., 12, 212, https://doi.org/10.1038/s41467-020-20570-w, 2021.
Travis, S. E. and Grace, J. B.: Predicting performance for ecological restoration: a case study using Spartina alterniflora, Ecol. Appl., 20, 192–204, https://doi.org/10.1890/08-1443.1, 2010.
Uhl, C. and Kauffman, J. B.: Deforestation, Fire Susceptibility, and Potential Tree Responses to Fire in the Eastern Amazon, Ecology, 71, 437–449, https://doi.org/10.2307/1940299, 1990.
van der Werf, G. R., Randerson, J. T., Giglio, L., van Leeuwen, T. T., Chen, Y., Rogers, B. M., Mu, M., van Marle, M. J. E., Morton, D. C., Collatz, G. J., Yokelson, R. J., and Kasibhatla, P. S.: Global fire emissions estimates during 1997–2016, Earth Syst. Sci. Data, 9, 697–720, https://doi.org/10.5194/essd-9-697-2017, 2017.
Van Wilgen, B. W., Govender, N., Biggs, H. C., Ntsala, D., and Funda, X. N.: Response of Savanna Fire Regimes to Changing Fire-Management Policies in a Large African National Park: Fire Regimes in an African Park, Conserv. Biol., 18, 1533–1540, https://doi.org/10.1111/j.1523-1739.2004.00362.x, 2004.
Veldman, J. W. and Putz, F. E.: Grass-dominated vegetation, not species-diverse natural savanna, replaces degraded tropical forests on the southern edge of the Amazon Basin, Biol. Conserv., 144, 1419–1429, https://doi.org/10.1016/j.biocon.2011.01.011, 2011.
Veldman, J. W., Mostacedo, B., Peña-Claros, M., and Putz, F. E.: Selective logging and fire as drivers of alien grass invasion in a Bolivian tropical dry forest, Forest Ecol. Manag., 258, 1643–1649, https://doi.org/10.1016/j.foreco.2009.07.024, 2009.
Venevsky, S., Thonicke, K., Sitch, S., and Cramer, W.: Simulating fire regimes in human-dominated ecosystems: Iberian Peninsula case study, Glob. Change Biol., 8, 984–998, 2002.
Venevsky, S., Le Page, Y., Pereira, J. M. C., and Wu, C.: Analysis fire patterns and drivers with a global SEVER-FIRE v1.0 model incorporated into dynamic global vegetation model and satellite and on-ground observations, Geosci. Model Dev., 12, 89–110, https://doi.org/10.5194/gmd-12-89-2019, 2019.
Walker, A. P., Hanson, P. J., De Kawe, M. G., Medlyn, B. E., Zaehle, S., Asao, S., Dietze, M., Hickler, T., Huntingford, C., Iversen, C. M., Jain, A., Lomas, M., Luo, Y., McCarthy, H., Parton, W. J., Prentice, I. C., Thornton, P. E., Wang, S., Wang, Y. P., Warlind, D., Weng, E., Warren, J. M., Woodward, F. I., Oren, R., and Norby, R. J.: Comprehensive ecosystem model-data synthesis using multiple data sets at two temperate forest free-air CO2 enrichment experiments: Model performance at ambient CO2 concentration, J. Geophys. Res.-Biogeo., 119, 937–964, 2014.
Williams, R. J., Gill, A. M., and Moore, P. H. R.: Fire behaviour, in: Fire in Tropical Savannas: The Kapalga Experiment, edited by: Anderson, A. N., Cook, G. D., and Williams, R. J., Springer, New York, N.Y., 33–46, https://doi.org/10.1007/b97225, 2003.
Wotton, B. M., Alexander, M. E., and Taylor, S. W.: Updates and revisions to the 1992 Canadian Forest Fire Behavior Prediction System, Information Report GLC-X-10, Canadian Forest Service, Great Lakes Forestry Centre, Sault Ste. Marie, Ontario, Canada, Natural Resources Canada, 45 pp., 2009.
Yue, C., Ciais, P., Cadule, P., Thonicke, K., Archibald, S., Poulter, B., Hao, W. M., Hantson, S., Mouillot, F., Friedlingstein, P., Maignan, F., and Viovy, N.: Modelling the role of fires in the terrestrial carbon balance by incorporating SPITFIRE into the global vegetation model ORCHIDEE – Part 1: simulating historical global burned area and fire regimes, Geosci. Model Dev., 7, 2747–2767, https://doi.org/10.5194/gmd-7-2747-2014, 2014.
Zuleta, D., Arellano, G., Muller-Landau, H. C., McMahon, S. M., Aguilar, S., Bunyavejchewin, S., Cárdenas, D., Chang-Yang, C., Duque, A., Mitre, D., Nasardin, M., Pérez, R., Sun, I., Yao, T. L., and Davies, S. J.: Individual tree damage dominates mortality risk factors across six tropical forests, New Phytol., 233, 705–721, https://doi.org/10.1111/nph.17832, 2022.
Short summary
We adapt a fire behavior and effects module for use in a size-structured vegetation demographic model to test how climate, fire regime, and fire-tolerance plant traits interact to determine the distribution of tropical forests and grasslands. Our model captures the connection between fire disturbance and plant fire-tolerance strategies in determining plant distribution and provides a useful tool for understanding the vulnerability of these areas under changing conditions across the tropics.
We adapt a fire behavior and effects module for use in a size-structured vegetation demographic...
