Articles | Volume 15, issue 4
https://doi.org/10.5194/gmd-15-1619-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/gmd-15-1619-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Model description paper
| 
24 Feb 2022
Model description paper |
| 24 Feb 2022
| 24 Feb 2022
Supporting hierarchical soil biogeochemical modeling: version 2 of the Biogeochemical Transport and Reaction model (BeTR-v2)
Jinyun Tang
CORRESPONDING AUTHOR
Climate and Ecosystem Science Division, Lawrence Berkeley National
Laboratory, Berkeley, CA, USA
William J. Riley
Climate and Ecosystem Science Division, Lawrence Berkeley National
Laboratory, Berkeley, CA, USA
Qing Zhu
Climate and Ecosystem Science Division, Lawrence Berkeley National
Laboratory, Berkeley, CA, USA
Related authors
Jinyun Tang and William J. Riley
Biogeosciences, 22, 1809–1819, https://doi.org/10.5194/bg-22-1809-2025, https://doi.org/10.5194/bg-22-1809-2025, 2025
Short summary
Short summary
A new mathematical formulation of the dynamic energy budget model is presented for the growth of biological organisms. This new formulation combines mass conservation law and chemical kinetics theory and is computationally faster than the standard formulation of dynamic energy budget models. In simulating the growth of Thalassiosira weissflogii in a nitrogen-limiting chemostat, the new model is as good as the standard dynamic energy budget model using almost the same parameter values.
Zewei Ma, Kaiyu Guan, Bin Peng, Wang Zhou, Robert Grant, Jinyun Tang, Murugesu Sivapalan, Ming Pan, Li Li, and Zhenong Jin
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2024-340, https://doi.org/10.5194/hess-2024-340, 2024
Preprint under review for HESS
Short summary
Short summary
We explore tile drainage’ impacts on the integrated hydrology-biogeochemistry-plant system, using ecosys with soil oxygen and microbe dynamics. We found that tile drainage lowers soil water content and improves soil oxygen levels, which helps crops grow better, especially during wet springs, and the developed root system also helps mitigate drought stress on dry summers. Overall, tile drainage increases crop resilience to climate change, making it a valuable future agricultural practice.
Lingbo Li, Hong-Yi Li, Guta Abeshu, Jinyun Tang, L. Ruby Leung, Chang Liao, Zeli Tan, Hanqin Tian, Peter Thornton, and Xiaojuan Yang
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-43, https://doi.org/10.5194/essd-2024-43, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
We have developed a new map that reveals how organic carbon from soil leaches into headwater streams over the contiguous United States. We use advanced artificial intelligence techniques and a massive amount of data, including observations at over 2,500 gauges and a wealth of climate and environmental information. The map is a critical step in understanding and predicting how carbon moves through our environment, hence a useful tool for tackling climate challenges.
Jinyun Tang and William J. Riley
Biogeosciences, 21, 1061–1070, https://doi.org/10.5194/bg-21-1061-2024, https://doi.org/10.5194/bg-21-1061-2024, 2024
Short summary
Short summary
A chemical kinetics theory is proposed to explain the non-monotonic relationship between temperature and biochemical rates. It incorporates the observed thermally reversible enzyme denaturation that is ensured by the ceaseless thermal motion of molecules and ions in an enzyme solution and three well-established theories: (1) law of mass action, (2) diffusion-limited chemical reaction theory, and (3) transition state theory.
Licheng Liu, Shaoming Xu, Jinyun Tang, Kaiyu Guan, Timothy J. Griffis, Matthew D. Erickson, Alexander L. Frie, Xiaowei Jia, Taegon Kim, Lee T. Miller, Bin Peng, Shaowei Wu, Yufeng Yang, Wang Zhou, Vipin Kumar, and Zhenong Jin
Geosci. Model Dev., 15, 2839–2858, https://doi.org/10.5194/gmd-15-2839-2022, https://doi.org/10.5194/gmd-15-2839-2022, 2022
Short summary
Short summary
By incorporating the domain knowledge into a machine learning model, KGML-ag overcomes the well-known limitations of process-based models due to insufficient representations and constraints, and unlocks the “black box” of machine learning models. Therefore, KGML-ag can outperform existing approaches on capturing the hot moment and complex dynamics of N2O flux. This study will be a critical reference for the new generation of modeling paradigm for biogeochemistry and other geoscience processes.
Fushan Wang, Guangheng Ni, William J. Riley, Jinyun Tang, Dejun Zhu, and Ting Sun
Geosci. Model Dev., 12, 2119–2138, https://doi.org/10.5194/gmd-12-2119-2019, https://doi.org/10.5194/gmd-12-2119-2019, 2019
Short summary
Short summary
The current lake model in the Weather Research and Forecasting system was reported to be insufficient in simulating deep lakes and reservoirs. We thus revised the lake model by improving its spatial discretization scheme, surface property parameterization, diffusivity parameterization, and convection scheme. The revised model was evaluated at a deep reservoir in southwestern China and the results were in good agreement with measurements.
Jin-Yun Tang and William J. Riley
Geosci. Model Dev., 10, 3277–3295, https://doi.org/10.5194/gmd-10-3277-2017, https://doi.org/10.5194/gmd-10-3277-2017, 2017
Short summary
Short summary
We proposed the SUPECA kinetics to scale from single biogeochemical reactions to a network of mixed substrates and consumers. The framework for the first time represents single-substrate reactions, two-substrate reactions, and mineral surface sorption reactions in a scaling consistent manner. This new theory is theoretically solid and outperforms existing theories, particularly for substrate-limiting systems. The test with aerobic soil respiration showed its strengths for pragmatic application.
Elsa Abs, Christoph Keuschnig, Pierre Amato, Chris Bowler, Eric Capo, Alexander Chase, Luciana Chavez Rodriguez, Abraham Dabengwa, Thomas Dussarrat, Thomas Guzman, Linnea Honeker, Jenni Hultman, Kirsten Küsel, Zhen Li, Anna Mankowski, William Riley, Scott Saleska, and Lisa Wingate
EGUsphere, https://doi.org/10.5194/egusphere-2025-1716, https://doi.org/10.5194/egusphere-2025-1716, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
Meta-omics technologies offer new tools to understand how microbial and plant functional diversity shape biogeochemical cycles across ecosystems. This perspective explores how integrating omics data with ecological and modeling approaches can improve our understanding of greenhouse gas fluxes and nutrient dynamics, from soils to clouds, and from the past to the future. We highlight challenges and opportunities for scaling omics insights from local processes to Earth system models.
Jinyun Tang and William J. Riley
Biogeosciences, 22, 1809–1819, https://doi.org/10.5194/bg-22-1809-2025, https://doi.org/10.5194/bg-22-1809-2025, 2025
Short summary
Short summary
A new mathematical formulation of the dynamic energy budget model is presented for the growth of biological organisms. This new formulation combines mass conservation law and chemical kinetics theory and is computationally faster than the standard formulation of dynamic energy budget models. In simulating the growth of Thalassiosira weissflogii in a nitrogen-limiting chemostat, the new model is as good as the standard dynamic energy budget model using almost the same parameter values.
Ashley Brereton, Zelalem Mekonnen, Bhavna Arora, William Riley, Kunxiaojia Yuan, Yi Xu, Yu Zhang, Qing Zhu, Tyler Anthony, and Adina Paytan
EGUsphere, https://doi.org/10.5194/egusphere-2025-361, https://doi.org/10.5194/egusphere-2025-361, 2025
This preprint is open for discussion and under review for Geoscientific Model Development (GMD).
Short summary
Short summary
Wetlands absorb carbon dioxide (CO2), helping slow climate change, but they also release methane, a potent warming gas. We developed a collection of AI-based models to estimate magnitudes of CO2 and methane exchanged between the land and the atmosphere, for wetlands on a regional scale. This approach helps to inform land-use planning, restoration, and greenhouse gas accounting, while also creating a foundation for future advancements in prediction accuracy.
Zhen Zhang, Benjamin Poulter, Joe R. Melton, William J. Riley, George H. Allen, David J. Beerling, Philippe Bousquet, Josep G. Canadell, Etienne Fluet-Chouinard, Philippe Ciais, Nicola Gedney, Peter O. Hopcroft, Akihiko Ito, Robert B. Jackson, Atul K. Jain, Katherine Jensen, Fortunat Joos, Thomas Kleinen, Sara H. Knox, Tingting Li, Xin Li, Xiangyu Liu, Kyle McDonald, Gavin McNicol, Paul A. Miller, Jurek Müller, Prabir K. Patra, Changhui Peng, Shushi Peng, Zhangcai Qin, Ryan M. Riggs, Marielle Saunois, Qing Sun, Hanqin Tian, Xiaoming Xu, Yuanzhi Yao, Yi Xi, Wenxin Zhang, Qing Zhu, Qiuan Zhu, and Qianlai Zhuang
Biogeosciences, 22, 305–321, https://doi.org/10.5194/bg-22-305-2025, https://doi.org/10.5194/bg-22-305-2025, 2025
Short summary
Short summary
This study assesses global methane emissions from wetlands between 2000 and 2020 using multiple models. We found that wetland emissions increased by 6–7 Tg CH4 yr-1 in the 2010s compared to the 2000s. Rising temperatures primarily drove this increase, while changes in precipitation and CO2 levels also played roles. Our findings highlight the importance of wetlands in the global methane budget and the need for continuous monitoring to understand their impact on climate change.
Zewei Ma, Kaiyu Guan, Bin Peng, Wang Zhou, Robert Grant, Jinyun Tang, Murugesu Sivapalan, Ming Pan, Li Li, and Zhenong Jin
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2024-340, https://doi.org/10.5194/hess-2024-340, 2024
Preprint under review for HESS
Short summary
Short summary
We explore tile drainage’ impacts on the integrated hydrology-biogeochemistry-plant system, using ecosys with soil oxygen and microbe dynamics. We found that tile drainage lowers soil water content and improves soil oxygen levels, which helps crops grow better, especially during wet springs, and the developed root system also helps mitigate drought stress on dry summers. Overall, tile drainage increases crop resilience to climate change, making it a valuable future agricultural practice.
Kamal Nyaupane, Umakant Mishra, Feng Tao, Kyongmin Yeo, William J. Riley, Forrest M. Hoffman, and Sagar Gautam
Biogeosciences, 21, 5173–5183, https://doi.org/10.5194/bg-21-5173-2024, https://doi.org/10.5194/bg-21-5173-2024, 2024
Short summary
Short summary
Representing soil organic carbon (SOC) dynamics in Earth system models (ESMs) is a key source of uncertainty in predicting carbon–climate feedbacks. Using machine learning, we develop and compare predictive relationships in observations (Obs) and ESMs. We find different relationships between environmental factors and SOC stocks in Obs and ESMs. SOC prediction in ESMs may be improved by representing the functional relationships of environmental controllers in a way consistent with observations.
Hanqin Tian, Naiqing Pan, Rona L. Thompson, Josep G. Canadell, Parvadha Suntharalingam, Pierre Regnier, Eric A. Davidson, Michael Prather, Philippe Ciais, Marilena Muntean, Shufen Pan, Wilfried Winiwarter, Sönke Zaehle, Feng Zhou, Robert B. Jackson, Hermann W. Bange, Sarah Berthet, Zihao Bian, Daniele Bianchi, Alexander F. Bouwman, Erik T. Buitenhuis, Geoffrey Dutton, Minpeng Hu, Akihiko Ito, Atul K. Jain, Aurich Jeltsch-Thömmes, Fortunat Joos, Sian Kou-Giesbrecht, Paul B. Krummel, Xin Lan, Angela Landolfi, Ronny Lauerwald, Ya Li, Chaoqun Lu, Taylor Maavara, Manfredi Manizza, Dylan B. Millet, Jens Mühle, Prabir K. Patra, Glen P. Peters, Xiaoyu Qin, Peter Raymond, Laure Resplandy, Judith A. Rosentreter, Hao Shi, Qing Sun, Daniele Tonina, Francesco N. Tubiello, Guido R. van der Werf, Nicolas Vuichard, Junjie Wang, Kelley C. Wells, Luke M. Western, Chris Wilson, Jia Yang, Yuanzhi Yao, Yongfa You, and Qing Zhu
Earth Syst. Sci. Data, 16, 2543–2604, https://doi.org/10.5194/essd-16-2543-2024, https://doi.org/10.5194/essd-16-2543-2024, 2024
Short summary
Short summary
Atmospheric concentrations of nitrous oxide (N2O), a greenhouse gas 273 times more potent than carbon dioxide, have increased by 25 % since the preindustrial period, with the highest observed growth rate in 2020 and 2021. This rapid growth rate has primarily been due to a 40 % increase in anthropogenic emissions since 1980. Observed atmospheric N2O concentrations in recent years have exceeded the worst-case climate scenario, underscoring the importance of reducing anthropogenic N2O emissions.
Marielle Saunois, Adrien Martinez, Benjamin Poulter, Zhen Zhang, Peter Raymond, Pierre Regnier, Joseph G. Canadell, Robert B. Jackson, Prabir K. Patra, Philippe Bousquet, Philippe Ciais, Edward J. Dlugokencky, Xin Lan, George H. Allen, David Bastviken, David J. Beerling, Dmitry A. Belikov, Donald R. Blake, Simona Castaldi, Monica Crippa, Bridget R. Deemer, Fraser Dennison, Giuseppe Etiope, Nicola Gedney, Lena Höglund-Isaksson, Meredith A. Holgerson, Peter O. Hopcroft, Gustaf Hugelius, Akihito Ito, Atul K. Jain, Rajesh Janardanan, Matthew S. Johnson, Thomas Kleinen, Paul Krummel, Ronny Lauerwald, Tingting Li, Xiangyu Liu, Kyle C. McDonald, Joe R. Melton, Jens Mühle, Jurek Müller, Fabiola Murguia-Flores, Yosuke Niwa, Sergio Noce, Shufen Pan, Robert J. Parker, Changhui Peng, Michel Ramonet, William J. Riley, Gerard Rocher-Ros, Judith A. Rosentreter, Motoki Sasakawa, Arjo Segers, Steven J. Smith, Emily H. Stanley, Joel Thanwerdas, Hanquin Tian, Aki Tsuruta, Francesco N. Tubiello, Thomas S. Weber, Guido van der Werf, Doug E. Worthy, Yi Xi, Yukio Yoshida, Wenxin Zhang, Bo Zheng, Qing Zhu, Qiuan Zhu, and Qianlai Zhuang
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-115, https://doi.org/10.5194/essd-2024-115, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
Methane (CH4) is the second most important human-influenced greenhouse gas in terms of climate forcing after carbon dioxide (CO2). A consortium of multi-disciplinary scientists synthesize and update the budget of the sources and sinks of CH4. This edition benefits from important progresses in estimating emissions from lakes and ponds, reservoirs, and streams and rivers. For the 2010s decade, global CH4 emissions are estimated at 575 Tg CH4 yr-1, including ~65 % from anthropogenic sources.
Lingbo Li, Hong-Yi Li, Guta Abeshu, Jinyun Tang, L. Ruby Leung, Chang Liao, Zeli Tan, Hanqin Tian, Peter Thornton, and Xiaojuan Yang
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-43, https://doi.org/10.5194/essd-2024-43, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
We have developed a new map that reveals how organic carbon from soil leaches into headwater streams over the contiguous United States. We use advanced artificial intelligence techniques and a massive amount of data, including observations at over 2,500 gauges and a wealth of climate and environmental information. The map is a critical step in understanding and predicting how carbon moves through our environment, hence a useful tool for tackling climate challenges.
Jinyun Tang and William J. Riley
Biogeosciences, 21, 1061–1070, https://doi.org/10.5194/bg-21-1061-2024, https://doi.org/10.5194/bg-21-1061-2024, 2024
Short summary
Short summary
A chemical kinetics theory is proposed to explain the non-monotonic relationship between temperature and biochemical rates. It incorporates the observed thermally reversible enzyme denaturation that is ensured by the ceaseless thermal motion of molecules and ions in an enzyme solution and three well-established theories: (1) law of mass action, (2) diffusion-limited chemical reaction theory, and (3) transition state theory.
Fa Li, Qing Zhu, William J. Riley, Lei Zhao, Li Xu, Kunxiaojia Yuan, Min Chen, Huayi Wu, Zhipeng Gui, Jianya Gong, and James T. Randerson
Geosci. Model Dev., 16, 869–884, https://doi.org/10.5194/gmd-16-869-2023, https://doi.org/10.5194/gmd-16-869-2023, 2023
Short summary
Short summary
We developed an interpretable machine learning model to predict sub-seasonal and near-future wildfire-burned area over African and South American regions. We found strong time-lagged controls (up to 6–8 months) of local climate wetness on burned areas. A skillful use of such time-lagged controls in machine learning models results in highly accurate predictions of wildfire-burned areas; this will also help develop relevant early-warning and management systems for tropical wildfires.
Licheng Liu, Shaoming Xu, Jinyun Tang, Kaiyu Guan, Timothy J. Griffis, Matthew D. Erickson, Alexander L. Frie, Xiaowei Jia, Taegon Kim, Lee T. Miller, Bin Peng, Shaowei Wu, Yufeng Yang, Wang Zhou, Vipin Kumar, and Zhenong Jin
Geosci. Model Dev., 15, 2839–2858, https://doi.org/10.5194/gmd-15-2839-2022, https://doi.org/10.5194/gmd-15-2839-2022, 2022
Short summary
Short summary
By incorporating the domain knowledge into a machine learning model, KGML-ag overcomes the well-known limitations of process-based models due to insufficient representations and constraints, and unlocks the “black box” of machine learning models. Therefore, KGML-ag can outperform existing approaches on capturing the hot moment and complex dynamics of N2O flux. This study will be a critical reference for the new generation of modeling paradigm for biogeochemistry and other geoscience processes.
Qing Zhu, Fa Li, William J. Riley, Li Xu, Lei Zhao, Kunxiaojia Yuan, Huayi Wu, Jianya Gong, and James Randerson
Geosci. Model Dev., 15, 1899–1911, https://doi.org/10.5194/gmd-15-1899-2022, https://doi.org/10.5194/gmd-15-1899-2022, 2022
Short summary
Short summary
Wildfire is a devastating Earth system process that burns about 500 million hectares of land each year. It wipes out vegetation including trees, shrubs, and grasses and causes large losses of economic assets. However, modeling the spatial distribution and temporal changes of wildfire activities at a global scale is challenging. This study built a machine-learning-based wildfire surrogate model within an existing Earth system model and achieved high accuracy.
Jing Tao, Qing Zhu, William J. Riley, and Rebecca B. Neumann
The Cryosphere, 15, 5281–5307, https://doi.org/10.5194/tc-15-5281-2021, https://doi.org/10.5194/tc-15-5281-2021, 2021
Short summary
Short summary
We improved the DOE's E3SM land model (ELMv1-ECA) simulations of soil temperature, zero-curtain period durations, cold-season CH4, and CO2 emissions at several Alaskan Arctic tundra sites. We demonstrated that simulated CH4 emissions during zero-curtain periods accounted for more than 50 % of total emissions throughout the entire cold season (Sep to May). We also found that cold-season CO2 emissions largely offset warm-season net uptake currently and showed increasing trends from 1950 to 2017.
Kyle B. Delwiche, Sara Helen Knox, Avni Malhotra, Etienne Fluet-Chouinard, Gavin McNicol, Sarah Feron, Zutao Ouyang, Dario Papale, Carlo Trotta, Eleonora Canfora, You-Wei Cheah, Danielle Christianson, Ma. Carmelita R. Alberto, Pavel Alekseychik, Mika Aurela, Dennis Baldocchi, Sheel Bansal, David P. Billesbach, Gil Bohrer, Rosvel Bracho, Nina Buchmann, David I. Campbell, Gerardo Celis, Jiquan Chen, Weinan Chen, Housen Chu, Higo J. Dalmagro, Sigrid Dengel, Ankur R. Desai, Matteo Detto, Han Dolman, Elke Eichelmann, Eugenie Euskirchen, Daniela Famulari, Kathrin Fuchs, Mathias Goeckede, Sébastien Gogo, Mangaliso J. Gondwe, Jordan P. Goodrich, Pia Gottschalk, Scott L. Graham, Martin Heimann, Manuel Helbig, Carole Helfter, Kyle S. Hemes, Takashi Hirano, David Hollinger, Lukas Hörtnagl, Hiroki Iwata, Adrien Jacotot, Gerald Jurasinski, Minseok Kang, Kuno Kasak, John King, Janina Klatt, Franziska Koebsch, Ken W. Krauss, Derrick Y. F. Lai, Annalea Lohila, Ivan Mammarella, Luca Belelli Marchesini, Giovanni Manca, Jaclyn Hatala Matthes, Trofim Maximov, Lutz Merbold, Bhaskar Mitra, Timothy H. Morin, Eiko Nemitz, Mats B. Nilsson, Shuli Niu, Walter C. Oechel, Patricia Y. Oikawa, Keisuke Ono, Matthias Peichl, Olli Peltola, Michele L. Reba, Andrew D. Richardson, William Riley, Benjamin R. K. Runkle, Youngryel Ryu, Torsten Sachs, Ayaka Sakabe, Camilo Rey Sanchez, Edward A. Schuur, Karina V. R. Schäfer, Oliver Sonnentag, Jed P. Sparks, Ellen Stuart-Haëntjens, Cove Sturtevant, Ryan C. Sullivan, Daphne J. Szutu, Jonathan E. Thom, Margaret S. Torn, Eeva-Stiina Tuittila, Jessica Turner, Masahito Ueyama, Alex C. Valach, Rodrigo Vargas, Andrej Varlagin, Alma Vazquez-Lule, Joseph G. Verfaillie, Timo Vesala, George L. Vourlitis, Eric J. Ward, Christian Wille, Georg Wohlfahrt, Guan Xhuan Wong, Zhen Zhang, Donatella Zona, Lisamarie Windham-Myers, Benjamin Poulter, and Robert B. Jackson
Earth Syst. Sci. Data, 13, 3607–3689, https://doi.org/10.5194/essd-13-3607-2021, https://doi.org/10.5194/essd-13-3607-2021, 2021
Short summary
Short summary
Methane is an important greenhouse gas, yet we lack knowledge about its global emissions and drivers. We present FLUXNET-CH4, a new global collection of methane measurements and a critical resource for the research community. We use FLUXNET-CH4 data to quantify the seasonality of methane emissions from freshwater wetlands, finding that methane seasonality varies strongly with latitude. Our new database and analysis will improve wetland model accuracy and inform greenhouse gas budgets.
Robinson I. Negrón-Juárez, Jennifer A. Holm, Boris Faybishenko, Daniel Magnabosco-Marra, Rosie A. Fisher, Jacquelyn K. Shuman, Alessandro C. de Araujo, William J. Riley, and Jeffrey Q. Chambers
Biogeosciences, 17, 6185–6205, https://doi.org/10.5194/bg-17-6185-2020, https://doi.org/10.5194/bg-17-6185-2020, 2020
Short summary
Short summary
The temporal variability in the Landsat satellite near-infrared (NIR) band captured the dynamics of forest regrowth after disturbances in Central Amazon. This variability was represented by the dynamics of forest regrowth after disturbances were properly represented by the ELM-FATES model (Functionally Assembled Terrestrial Ecosystem Simulator (FATES) in the Energy Exascale Earth System Model (E3SM) Land Model (ELM)).
Kuang-Yu Chang, William J. Riley, Patrick M. Crill, Robert F. Grant, and Scott R. Saleska
Biogeosciences, 17, 5849–5860, https://doi.org/10.5194/bg-17-5849-2020, https://doi.org/10.5194/bg-17-5849-2020, 2020
Short summary
Short summary
Methane (CH4) is a strong greenhouse gas that can accelerate climate change and offset mitigation efforts. A key assumption embedded in many large-scale climate models is that ecosystem CH4 emissions can be estimated by fixed temperature relations. Here, we demonstrate that CH4 emissions cannot be parameterized by emergent temperature response alone due to variability driven by microbial and abiotic interactions. We also provide mechanistic understanding for observed CH4 emission hysteresis.
Haifan Liu, Heng Dai, Jie Niu, Bill X. Hu, Dongwei Gui, Han Qiu, Ming Ye, Xingyuan Chen, Chuanhao Wu, Jin Zhang, and William Riley
Hydrol. Earth Syst. Sci., 24, 4971–4996, https://doi.org/10.5194/hess-24-4971-2020, https://doi.org/10.5194/hess-24-4971-2020, 2020
Short summary
Short summary
It is still challenging to apply the quantitative and comprehensive global sensitivity analysis method to complex large-scale process-based hydrological models because of variant uncertainty sources and high computational cost. This work developed a new tool and demonstrate its implementation to a pilot example for comprehensive global sensitivity analysis of large-scale hydrological modelling. This method is mathematically rigorous and can be applied to other large-scale hydrological models.
Dalei Hao, Ghassem R. Asrar, Yelu Zeng, Qing Zhu, Jianguang Wen, Qing Xiao, and Min Chen
Earth Syst. Sci. Data, 12, 2209–2221, https://doi.org/10.5194/essd-12-2209-2020, https://doi.org/10.5194/essd-12-2209-2020, 2020
Short summary
Short summary
We adopted machine-learning models to generate the first global land products of SW–PAR based on DSCOVR/EPIC data. Our products are consistent with ground-based observations, capture the spatiotemporal patterns well and accurately track substantial diurnal, monthly and seasonal variations in SW–PAR. Our products provide a valuable alternative for solar photovoltaic applications and can be used to improve our understanding of the diurnal cycles of terrestrial water, carbon and energy fluxes.
Marielle Saunois, Ann R. Stavert, Ben Poulter, Philippe Bousquet, Josep G. Canadell, Robert B. Jackson, Peter A. Raymond, Edward J. Dlugokencky, Sander Houweling, Prabir K. Patra, Philippe Ciais, Vivek K. Arora, David Bastviken, Peter Bergamaschi, Donald R. Blake, Gordon Brailsford, Lori Bruhwiler, Kimberly M. Carlson, Mark Carrol, Simona Castaldi, Naveen Chandra, Cyril Crevoisier, Patrick M. Crill, Kristofer Covey, Charles L. Curry, Giuseppe Etiope, Christian Frankenberg, Nicola Gedney, Michaela I. Hegglin, Lena Höglund-Isaksson, Gustaf Hugelius, Misa Ishizawa, Akihiko Ito, Greet Janssens-Maenhout, Katherine M. Jensen, Fortunat Joos, Thomas Kleinen, Paul B. Krummel, Ray L. Langenfelds, Goulven G. Laruelle, Licheng Liu, Toshinobu Machida, Shamil Maksyutov, Kyle C. McDonald, Joe McNorton, Paul A. Miller, Joe R. Melton, Isamu Morino, Jurek Müller, Fabiola Murguia-Flores, Vaishali Naik, Yosuke Niwa, Sergio Noce, Simon O'Doherty, Robert J. Parker, Changhui Peng, Shushi Peng, Glen P. Peters, Catherine Prigent, Ronald Prinn, Michel Ramonet, Pierre Regnier, William J. Riley, Judith A. Rosentreter, Arjo Segers, Isobel J. Simpson, Hao Shi, Steven J. Smith, L. Paul Steele, Brett F. Thornton, Hanqin Tian, Yasunori Tohjima, Francesco N. Tubiello, Aki Tsuruta, Nicolas Viovy, Apostolos Voulgarakis, Thomas S. Weber, Michiel van Weele, Guido R. van der Werf, Ray F. Weiss, Doug Worthy, Debra Wunch, Yi Yin, Yukio Yoshida, Wenxin Zhang, Zhen Zhang, Yuanhong Zhao, Bo Zheng, Qing Zhu, Qiuan Zhu, and Qianlai Zhuang
Earth Syst. Sci. Data, 12, 1561–1623, https://doi.org/10.5194/essd-12-1561-2020, https://doi.org/10.5194/essd-12-1561-2020, 2020
Short summary
Short summary
Understanding and quantifying the global methane (CH4) budget is important for assessing realistic pathways to mitigate climate change. We have established a consortium of multidisciplinary scientists under the umbrella of the Global Carbon Project to synthesize and stimulate new research aimed at improving and regularly updating the global methane budget. This is the second version of the review dedicated to the decadal methane budget, integrating results of top-down and bottom-up estimates.
Haifan Liu, Heng Dai, Jie Niu, Bill X. Hu, Han Qiu, Dongwei Gui, Ming Ye, Xingyuan Chen, Chuanhao Wu, Jin Zhang, and William Riley
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2019-246, https://doi.org/10.5194/hess-2019-246, 2019
Manuscript not accepted for further review
Fushan Wang, Guangheng Ni, William J. Riley, Jinyun Tang, Dejun Zhu, and Ting Sun
Geosci. Model Dev., 12, 2119–2138, https://doi.org/10.5194/gmd-12-2119-2019, https://doi.org/10.5194/gmd-12-2119-2019, 2019
Short summary
Short summary
The current lake model in the Weather Research and Forecasting system was reported to be insufficient in simulating deep lakes and reservoirs. We thus revised the lake model by improving its spatial discretization scheme, surface property parameterization, diffusivity parameterization, and convection scheme. The revised model was evaluated at a deep reservoir in southwestern China and the results were in good agreement with measurements.
Kuang-Yu Chang, William J. Riley, Patrick M. Crill, Robert F. Grant, Virginia I. Rich, and Scott R. Saleska
The Cryosphere, 13, 647–663, https://doi.org/10.5194/tc-13-647-2019, https://doi.org/10.5194/tc-13-647-2019, 2019
Short summary
Short summary
Permafrost peatlands store large amounts of carbon potentially vulnerable to decomposition under changing climate. We estimated effects of climate forcing biases on carbon cycling at a thawing permafrost peatland in subarctic Sweden. Our results indicate that many climate reanalysis products are cold and wet biased in our study region, leading to erroneous active layer depth and carbon budget estimates. Future studies should recognize the effects of climate forcing uncertainty on carbon cycling.
Gautam Bisht, William J. Riley, Glenn E. Hammond, and David M. Lorenzetti
Geosci. Model Dev., 11, 4085–4102, https://doi.org/10.5194/gmd-11-4085-2018, https://doi.org/10.5194/gmd-11-4085-2018, 2018
Short summary
Short summary
Most existing global land surface models used to study impacts of climate change on water resources routinely use different models for near-surface unsaturated soil and the deeper groundwater table. We developed a model that uses a unified treatment of soil hydrologic processes throughout the entire soil column. Using a calibrated drainage parameter, the new model is able to correctly predict deep water table depth as reported in an observationally constrained global dataset.
Xiyan Xu, William J. Riley, Charles D. Koven, and Gensuo Jia
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-257, https://doi.org/10.5194/bg-2018-257, 2018
Preprint withdrawn
Gautam Bisht, William J. Riley, Haruko M. Wainwright, Baptiste Dafflon, Fengming Yuan, and Vladimir E. Romanovsky
Geosci. Model Dev., 11, 61–76, https://doi.org/10.5194/gmd-11-61-2018, https://doi.org/10.5194/gmd-11-61-2018, 2018
Short summary
Short summary
The land model integrated into the Energy Exascale Earth System Model was extended to include snow redistribution (SR) and lateral subsurface hydrologic and thermal processes. Simulation results at a polygonal tundra site near Barrow, Alaska, showed that inclusion of SR resulted in a better agreement with observations. Excluding lateral subsurface processes had a small impact on mean states but caused a large overestimation of spatial variability in soil moisture and temperature.
Gautam Bisht, Maoyi Huang, Tian Zhou, Xingyuan Chen, Heng Dai, Glenn E. Hammond, William J. Riley, Janelle L. Downs, Ying Liu, and John M. Zachara
Geosci. Model Dev., 10, 4539–4562, https://doi.org/10.5194/gmd-10-4539-2017, https://doi.org/10.5194/gmd-10-4539-2017, 2017
Short summary
Short summary
A fully coupled three-dimensional surface and subsurface land model, CP v1.0, was developed to simulate three-way interactions among river water, groundwater, and land surface processes. The coupled model can be used for improving mechanistic understanding of ecosystem functioning and biogeochemical cycling along river corridors under historical and future hydroclimatic changes. The dataset presented in this study can also serve as a good benchmarking case for testing other integrated models.
Marielle Saunois, Philippe Bousquet, Ben Poulter, Anna Peregon, Philippe Ciais, Josep G. Canadell, Edward J. Dlugokencky, Giuseppe Etiope, David Bastviken, Sander Houweling, Greet Janssens-Maenhout, Francesco N. Tubiello, Simona Castaldi, Robert B. Jackson, Mihai Alexe, Vivek K. Arora, David J. Beerling, Peter Bergamaschi, Donald R. Blake, Gordon Brailsford, Lori Bruhwiler, Cyril Crevoisier, Patrick Crill, Kristofer Covey, Christian Frankenberg, Nicola Gedney, Lena Höglund-Isaksson, Misa Ishizawa, Akihiko Ito, Fortunat Joos, Heon-Sook Kim, Thomas Kleinen, Paul Krummel, Jean-François Lamarque, Ray Langenfelds, Robin Locatelli, Toshinobu Machida, Shamil Maksyutov, Joe R. Melton, Isamu Morino, Vaishali Naik, Simon O'Doherty, Frans-Jan W. Parmentier, Prabir K. Patra, Changhui Peng, Shushi Peng, Glen P. Peters, Isabelle Pison, Ronald Prinn, Michel Ramonet, William J. Riley, Makoto Saito, Monia Santini, Ronny Schroeder, Isobel J. Simpson, Renato Spahni, Atsushi Takizawa, Brett F. Thornton, Hanqin Tian, Yasunori Tohjima, Nicolas Viovy, Apostolos Voulgarakis, Ray Weiss, David J. Wilton, Andy Wiltshire, Doug Worthy, Debra Wunch, Xiyan Xu, Yukio Yoshida, Bowen Zhang, Zhen Zhang, and Qiuan Zhu
Atmos. Chem. Phys., 17, 11135–11161, https://doi.org/10.5194/acp-17-11135-2017, https://doi.org/10.5194/acp-17-11135-2017, 2017
Short summary
Short summary
Following the Global Methane Budget 2000–2012 published in Saunois et al. (2016), we use the same dataset of bottom-up and top-down approaches to discuss the variations in methane emissions over the period 2000–2012. The changes in emissions are discussed both in terms of trends and quasi-decadal changes. The ensemble gathered here allows us to synthesise the robust changes in terms of regional and sectorial contributions to the increasing methane emissions.
Jin-Yun Tang and William J. Riley
Geosci. Model Dev., 10, 3277–3295, https://doi.org/10.5194/gmd-10-3277-2017, https://doi.org/10.5194/gmd-10-3277-2017, 2017
Short summary
Short summary
We proposed the SUPECA kinetics to scale from single biogeochemical reactions to a network of mixed substrates and consumers. The framework for the first time represents single-substrate reactions, two-substrate reactions, and mineral surface sorption reactions in a scaling consistent manner. This new theory is theoretically solid and outperforms existing theories, particularly for substrate-limiting systems. The test with aerobic soil respiration showed its strengths for pragmatic application.
Sina Muster, Kurt Roth, Moritz Langer, Stephan Lange, Fabio Cresto Aleina, Annett Bartsch, Anne Morgenstern, Guido Grosse, Benjamin Jones, A. Britta K. Sannel, Ylva Sjöberg, Frank Günther, Christian Andresen, Alexandra Veremeeva, Prajna R. Lindgren, Frédéric Bouchard, Mark J. Lara, Daniel Fortier, Simon Charbonneau, Tarmo A. Virtanen, Gustaf Hugelius, Juri Palmtag, Matthias B. Siewert, William J. Riley, Charles D. Koven, and Julia Boike
Earth Syst. Sci. Data, 9, 317–348, https://doi.org/10.5194/essd-9-317-2017, https://doi.org/10.5194/essd-9-317-2017, 2017
Short summary
Short summary
Waterbodies are abundant in Arctic permafrost lowlands. Most waterbodies are ponds with a surface area smaller than 100 x 100 m. The Permafrost Region Pond and Lake Database (PeRL) for the first time maps ponds as small as 10 x 10 m. PeRL maps can be used to document changes both by comparing them to historical and future imagery. The distribution of waterbodies in the Arctic is important to know in order to manage resources in the Arctic and to improve climate predictions in the Arctic.
Kathrin M. Keller, Sebastian Lienert, Anil Bozbiyik, Thomas F. Stocker, Olga V. Churakova (Sidorova), David C. Frank, Stefan Klesse, Charles D. Koven, Markus Leuenberger, William J. Riley, Matthias Saurer, Rolf Siegwolf, Rosemarie B. Weigt, and Fortunat Joos
Biogeosciences, 14, 2641–2673, https://doi.org/10.5194/bg-14-2641-2017, https://doi.org/10.5194/bg-14-2641-2017, 2017
Marielle Saunois, Philippe Bousquet, Ben Poulter, Anna Peregon, Philippe Ciais, Josep G. Canadell, Edward J. Dlugokencky, Giuseppe Etiope, David Bastviken, Sander Houweling, Greet Janssens-Maenhout, Francesco N. Tubiello, Simona Castaldi, Robert B. Jackson, Mihai Alexe, Vivek K. Arora, David J. Beerling, Peter Bergamaschi, Donald R. Blake, Gordon Brailsford, Victor Brovkin, Lori Bruhwiler, Cyril Crevoisier, Patrick Crill, Kristofer Covey, Charles Curry, Christian Frankenberg, Nicola Gedney, Lena Höglund-Isaksson, Misa Ishizawa, Akihiko Ito, Fortunat Joos, Heon-Sook Kim, Thomas Kleinen, Paul Krummel, Jean-François Lamarque, Ray Langenfelds, Robin Locatelli, Toshinobu Machida, Shamil Maksyutov, Kyle C. McDonald, Julia Marshall, Joe R. Melton, Isamu Morino, Vaishali Naik, Simon O'Doherty, Frans-Jan W. Parmentier, Prabir K. Patra, Changhui Peng, Shushi Peng, Glen P. Peters, Isabelle Pison, Catherine Prigent, Ronald Prinn, Michel Ramonet, William J. Riley, Makoto Saito, Monia Santini, Ronny Schroeder, Isobel J. Simpson, Renato Spahni, Paul Steele, Atsushi Takizawa, Brett F. Thornton, Hanqin Tian, Yasunori Tohjima, Nicolas Viovy, Apostolos Voulgarakis, Michiel van Weele, Guido R. van der Werf, Ray Weiss, Christine Wiedinmyer, David J. Wilton, Andy Wiltshire, Doug Worthy, Debra Wunch, Xiyan Xu, Yukio Yoshida, Bowen Zhang, Zhen Zhang, and Qiuan Zhu
Earth Syst. Sci. Data, 8, 697–751, https://doi.org/10.5194/essd-8-697-2016, https://doi.org/10.5194/essd-8-697-2016, 2016
Short summary
Short summary
An accurate assessment of the methane budget is important to understand the atmospheric methane concentrations and trends and to provide realistic pathways for climate change mitigation. The various and diffuse sources of methane as well and its oxidation by a very short lifetime radical challenge this assessment. We quantify the methane sources and sinks as well as their uncertainties based on both bottom-up and top-down approaches provided by a broad international scientific community.
Xiyan Xu, William J. Riley, Charles D. Koven, Dave P. Billesbach, Rachel Y.-W. Chang, Róisín Commane, Eugénie S. Euskirchen, Sean Hartery, Yoshinobu Harazono, Hiroki Iwata, Kyle C. McDonald, Charles E. Miller, Walter C. Oechel, Benjamin Poulter, Naama Raz-Yaseef, Colm Sweeney, Margaret Torn, Steven C. Wofsy, Zhen Zhang, and Donatella Zona
Biogeosciences, 13, 5043–5056, https://doi.org/10.5194/bg-13-5043-2016, https://doi.org/10.5194/bg-13-5043-2016, 2016
Short summary
Short summary
Wetlands are the largest global natural methane source. Peat-rich bogs and fens lying between 50°N and 70°N contribute 10–30% to this source. The predictive capability of the seasonal methane cycle can directly affect the estimation of global methane budget. We present multiscale methane seasonal emission by observations and modeling and find that the uncertainties in predicting the seasonal methane emissions are from the wetland extent, cold-season CH4 production and CH4 transport processes.
Xiaofeng Xu, Fengming Yuan, Paul J. Hanson, Stan D. Wullschleger, Peter E. Thornton, William J. Riley, Xia Song, David E. Graham, Changchun Song, and Hanqin Tian
Biogeosciences, 13, 3735–3755, https://doi.org/10.5194/bg-13-3735-2016, https://doi.org/10.5194/bg-13-3735-2016, 2016
Short summary
Short summary
Accurately projecting future climate change requires a good methane modeling. However, how good the current models are and what are the key improvements needed remain unclear. This paper reviews the 40 published methane models to characterize the strengths and weakness of current methane models and further lay out the roadmap for future model improvements.
Jinyun Tang and William J. Riley
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-233, https://doi.org/10.5194/bg-2016-233, 2016
Preprint retracted
J. Y. Tang and W. J. Riley
Biogeosciences, 13, 723–735, https://doi.org/10.5194/bg-13-723-2016, https://doi.org/10.5194/bg-13-723-2016, 2016
Short summary
Short summary
We present a generic flux-limiting approach to simultaneously handle the availability limitation from many substrates, a problem common in all biogeochemical models. Our approach does not have the ordering problem like a few existing ad hoc approaches, and is straightforward to implement. Our results imply that significant uncertainties could have occurred in many biogeochemical models because of the improper handling of the substrate co-limitation problem.
Q. Zhu, W. J. Riley, J. Tang, and C. D. Koven
Biogeosciences, 13, 341–363, https://doi.org/10.5194/bg-13-341-2016, https://doi.org/10.5194/bg-13-341-2016, 2016
Short summary
Short summary
Here we develop, calibrate, and test a nutrient competition model that accounts for multiple soil nutrients interacting with multiple biotic and abiotic consumers based on enzyme kinetics theory. Our model provides an ecologically consistent representation of nutrient competition appropriate for land biogeochemical models integrated in Earth system models.
C. D. Koven, J. Q. Chambers, K. Georgiou, R. Knox, R. Negron-Juarez, W. J. Riley, V. K. Arora, V. Brovkin, P. Friedlingstein, and C. D. Jones
Biogeosciences, 12, 5211–5228, https://doi.org/10.5194/bg-12-5211-2015, https://doi.org/10.5194/bg-12-5211-2015, 2015
Short summary
Short summary
Terrestrial carbon feedbacks are a large uncertainty in climate change. We separate modeled feedback responses into those governed by changed carbon inputs (productivity) and changed outputs (turnover). The disaggregated responses show that both are important in controlling inter-model uncertainty. Interactions between productivity and turnover are also important, and research must focus on these interactions for more accurate projections of carbon cycle feedbacks.
U. Mishra and W. J. Riley
Biogeosciences, 12, 3993–4004, https://doi.org/10.5194/bg-12-3993-2015, https://doi.org/10.5194/bg-12-3993-2015, 2015
T. J. Bohn, J. R. Melton, A. Ito, T. Kleinen, R. Spahni, B. D. Stocker, B. Zhang, X. Zhu, R. Schroeder, M. V. Glagolev, S. Maksyutov, V. Brovkin, G. Chen, S. N. Denisov, A. V. Eliseev, A. Gallego-Sala, K. C. McDonald, M.A. Rawlins, W. J. Riley, Z. M. Subin, H. Tian, Q. Zhuang, and J. O. Kaplan
Biogeosciences, 12, 3321–3349, https://doi.org/10.5194/bg-12-3321-2015, https://doi.org/10.5194/bg-12-3321-2015, 2015
Short summary
Short summary
We evaluated 21 forward models and 5 inversions over western Siberia in terms of CH4 emissions and simulated wetland areas and compared these results to an intensive in situ CH4 flux data set, several wetland maps, and two satellite inundation products. In addition to assembling a definitive collection of methane emissions estimates for the region, we were able to identify the types of wetland maps and model features necessary for accurate simulations of high-latitude wetlands.
N. J. Bouskill, W. J. Riley, and J. Y. Tang
Biogeosciences, 11, 6969–6983, https://doi.org/10.5194/bg-11-6969-2014, https://doi.org/10.5194/bg-11-6969-2014, 2014
G. Bisht and W. J. Riley
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-11-12833-2014, https://doi.org/10.5194/hessd-11-12833-2014, 2014
Revised manuscript has not been submitted
G. S. H. Pau, G. Bisht, and W. J. Riley
Geosci. Model Dev., 7, 2091–2105, https://doi.org/10.5194/gmd-7-2091-2014, https://doi.org/10.5194/gmd-7-2091-2014, 2014
J. Y. Tang and W. J. Riley
Biogeosciences, 11, 3721–3728, https://doi.org/10.5194/bg-11-3721-2014, https://doi.org/10.5194/bg-11-3721-2014, 2014
W. J. Riley, F. Maggi, M. Kleber, M. S. Torn, J. Y. Tang, D. Dwivedi, and N. Guerry
Geosci. Model Dev., 7, 1335–1355, https://doi.org/10.5194/gmd-7-1335-2014, https://doi.org/10.5194/gmd-7-1335-2014, 2014
W. J. Riley and C. Shen
Hydrol. Earth Syst. Sci., 18, 2463–2483, https://doi.org/10.5194/hess-18-2463-2014, https://doi.org/10.5194/hess-18-2463-2014, 2014
I. N. Williams, W. J. Riley, M. S. Torn, S. C. Biraud, and M. L. Fischer
Atmos. Chem. Phys., 14, 1571–1585, https://doi.org/10.5194/acp-14-1571-2014, https://doi.org/10.5194/acp-14-1571-2014, 2014
J. Y. Tang and W. J. Riley
Biogeosciences, 10, 8329–8351, https://doi.org/10.5194/bg-10-8329-2013, https://doi.org/10.5194/bg-10-8329-2013, 2013
C. D. Koven, W. J. Riley, Z. M. Subin, J. Y. Tang, M. S. Torn, W. D. Collins, G. B. Bonan, D. M. Lawrence, and S. C. Swenson
Biogeosciences, 10, 7109–7131, https://doi.org/10.5194/bg-10-7109-2013, https://doi.org/10.5194/bg-10-7109-2013, 2013
P. C. Stoy, M. C. Dietze, A. D. Richardson, R. Vargas, A. G. Barr, R. S. Anderson, M. A. Arain, I. T. Baker, T. A. Black, J. M. Chen, R. B. Cook, C. M. Gough, R. F. Grant, D. Y. Hollinger, R. C. Izaurralde, C. J. Kucharik, P. Lafleur, B. E. Law, S. Liu, E. Lokupitiya, Y. Luo, J. W. Munger, C. Peng, B. Poulter, D. T. Price, D. M. Ricciuto, W. J. Riley, A. K. Sahoo, K. Schaefer, C. R. Schwalm, H. Tian, H. Verbeeck, and E. Weng
Biogeosciences, 10, 6893–6909, https://doi.org/10.5194/bg-10-6893-2013, https://doi.org/10.5194/bg-10-6893-2013, 2013
J. H. Shim, H. H. Powers, C. W. Meyer, A. Knohl, T. E. Dawson, W. J. Riley, W. T. Pockman, and N. McDowell
Biogeosciences, 10, 4937–4956, https://doi.org/10.5194/bg-10-4937-2013, https://doi.org/10.5194/bg-10-4937-2013, 2013
R. Wania, J. R. Melton, E. L. Hodson, B. Poulter, B. Ringeval, R. Spahni, T. Bohn, C. A. Avis, G. Chen, A. V. Eliseev, P. O. Hopcroft, W. J. Riley, Z. M. Subin, H. Tian, P. M. van Bodegom, T. Kleinen, Z. C. Yu, J. S. Singarayer, S. Zürcher, D. P. Lettenmaier, D. J. Beerling, S. N. Denisov, C. Prigent, F. Papa, and J. O. Kaplan
Geosci. Model Dev., 6, 617–641, https://doi.org/10.5194/gmd-6-617-2013, https://doi.org/10.5194/gmd-6-617-2013, 2013
S. C. Biraud, M. S. Torn, J. R. Smith, C. Sweeney, W. J. Riley, and P. P. Tans
Atmos. Meas. Tech., 6, 751–763, https://doi.org/10.5194/amt-6-751-2013, https://doi.org/10.5194/amt-6-751-2013, 2013
W. J. Riley
Geosci. Model Dev., 6, 345–352, https://doi.org/10.5194/gmd-6-345-2013, https://doi.org/10.5194/gmd-6-345-2013, 2013
J. Y. Tang and W. J. Riley
Hydrol. Earth Syst. Sci., 17, 873–893, https://doi.org/10.5194/hess-17-873-2013, https://doi.org/10.5194/hess-17-873-2013, 2013
J. R. Melton, R. Wania, E. L. Hodson, B. Poulter, B. Ringeval, R. Spahni, T. Bohn, C. A. Avis, D. J. Beerling, G. Chen, A. V. Eliseev, S. N. Denisov, P. O. Hopcroft, D. P. Lettenmaier, W. J. Riley, J. S. Singarayer, Z. M. Subin, H. Tian, S. Zürcher, V. Brovkin, P. M. van Bodegom, T. Kleinen, Z. C. Yu, and J. O. Kaplan
Biogeosciences, 10, 753–788, https://doi.org/10.5194/bg-10-753-2013, https://doi.org/10.5194/bg-10-753-2013, 2013
J. Y. Tang, W. J. Riley, C. D. Koven, and Z. M. Subin
Geosci. Model Dev., 6, 127–140, https://doi.org/10.5194/gmd-6-127-2013, https://doi.org/10.5194/gmd-6-127-2013, 2013
Related subject area
Climate and Earth system modeling
The ensemble consistency test: from CESM to MPAS and beyond
Presentation, calibration and testing of the DCESS II Earth system model of intermediate complexity (version 1.0)
Synthesizing global carbon–nitrogen coupling effects – the MAGICC coupled carbon–nitrogen cycle model v1.0
Historical trends and controlling factors of isoprene emissions in CMIP6 Earth system models
Investigating carbon and nitrogen conservation in reported CMIP6 Earth system model data
From weather data to river runoff: using spatiotemporal convolutional networks for discharge forecasting
A Fortran–Python interface for integrating machine learning parameterization into earth system models
A rapid-application emissions-to-impacts tool for scenario assessment: Probabilistic Regional Impacts from Model patterns and Emissions (PRIME)
The DOE E3SM version 2.1: overview and assessment of the impacts of parameterized ocean submesoscales
WRF-ELM v1.0: a regional climate model to study land–atmosphere interactions over heterogeneous land use regions
Modeling commercial-scale CO2 storage in the gas hydrate stability zone with PFLOTRAN v6.0
DiuSST: a conceptual model of diurnal warm layers for idealized atmospheric simulations with interactive sea surface temperature
High-Resolution Model Intercomparison Project phase 2 (HighResMIP2) towards CMIP7
T&C-CROP: representing mechanistic crop growth with a terrestrial biosphere model (T&C, v1.5) – model formulation and validation
An updated non-intrusive, multi-scale, and flexible coupling interface in WRF 4.6.0
Monitoring and benchmarking Earth system model simulations with ESMValTool v2.12.0
The Earth Science Box Modeling Toolkit (ESBMTK 0.14.0.11): a Python library for research and teaching
CropSuite v1.0 – a comprehensive open-source crop suitability model considering climate variability for climate impact assessment
ICON ComIn – the ICON Community Interface (ComIn version 0.1.0, with ICON version 2024.01-01)
Using feature importance as an exploratory data analysis tool on Earth system models
A new metrics framework for quantifying and intercomparing atmospheric rivers in observations, reanalyses, and climate models
The real challenges for climate and weather modelling on its way to sustained exascale performance: a case study using ICON (v2.6.6)
Improving the representation of major Indian crops in the Community Land Model version 5.0 (CLM5) using site-scale crop data
Evaluation of CORDEX ERA5-forced NARCliM2.0 regional climate models over Australia using the Weather Research and Forecasting (WRF) model version 4.1.2
Design, evaluation, and future projections of the NARCliM2.0 CORDEX-CMIP6 Australasia regional climate ensemble
Amending the algorithm of aerosol–radiation interactions in WRF-Chem (v4.4)
The very-high-resolution configuration of the EC-Earth global model for HighResMIP
GOSI9: UK Global Ocean and Sea Ice configurations
Decomposition of skill scores for conditional verification: impact of Atlantic Multidecadal Oscillation phases on the predictability of decadal temperature forecasts
Virtual Integration of Satellite and In-situ Observation Networks (VISION) v1.0: In-Situ Observations Simulator (ISO_simulator)
Climate model downscaling in central Asia: a dynamical and a neural network approach
Advanced climate model evaluation with ESMValTool v2.11.0 using parallel, out-of-core, and distributed computing
Multi-year simulations at kilometre scale with the Integrated Forecasting System coupled to FESOM2.5 and NEMOv3.4
Subsurface hydrological controls on the short-term effects of hurricanes on nitrate–nitrogen runoff loading: a case study of Hurricane Ida using the Energy Exascale Earth System Model (E3SM) Land Model (v2.1)
CARIB12: a regional Community Earth System Model/Modular Ocean Model 6 configuration of the Caribbean Sea
Process-based modeling framework for sustainable irrigation management at the regional scale: Integrating rice production, water use, and greenhouse gas emissions
Architectural insights into and training methodology optimization of Pangu-Weather
Evaluation of global fire simulations in CMIP6 Earth system models
Evaluating downscaled products with expected hydroclimatic co-variances
Software sustainability of global impact models
fair-calibrate v1.4.1: calibration, constraining, and validation of the FaIR simple climate model for reliable future climate projections
ISOM 1.0: a fully mesoscale-resolving idealized Southern Ocean model and the diversity of multiscale eddy interactions
A computationally lightweight model for ensemble forecasting of environmental hazards: General TAMSAT-ALERT v1.2.1
Introducing the MESMER-M-TPv0.1.0 module: spatially explicit Earth system model emulation for monthly precipitation and temperature
The need for carbon-emissions-driven climate projections in CMIP7
Robust handling of extremes in quantile mapping – “Murder your darlings”
A protocol for model intercomparison of impacts of marine cloud brightening climate intervention
An extensible perturbed parameter ensemble for the Community Atmosphere Model version 6
Coupling the regional climate model ICON-CLM v2.6.6 to the Earth system model GCOAST-AHOI v2.0 using OASIS3-MCT v4.0
A fully coupled solid-particle microphysics scheme for stratospheric aerosol injections within the aerosol–chemistry–climate model SOCOL-AERv2
Teo Price-Broncucia, Allison Baker, Dorit Hammerling, Michael Duda, and Rebecca Morrison
Geosci. Model Dev., 18, 2349–2372, https://doi.org/10.5194/gmd-18-2349-2025, https://doi.org/10.5194/gmd-18-2349-2025, 2025
Short summary
Short summary
The ensemble consistency test (ECT) and its ultrafast variant (UF-ECT) have become powerful tools in the development community for the identification of unwanted changes in the Community Earth System Model (CESM). We develop a generalized setup framework to enable easy adoption of the ECT approach for other model developers and communities. This framework specifies test parameters to accurately characterize model variability and balance test sensitivity and computational cost.
Esteban Fernández Villanueva and Gary Shaffer
Geosci. Model Dev., 18, 2161–2192, https://doi.org/10.5194/gmd-18-2161-2025, https://doi.org/10.5194/gmd-18-2161-2025, 2025
Short summary
Short summary
We describe, calibrate and test the Danish Center for Earth System Science (DCESS) II model, a new, broad, adaptable and fast Earth system model. DCESS II is designed for global simulations over timescales of years to millions of years using limited computer resources like a personal computer. With its flexibility and comprehensive treatment of the global carbon cycle, DCESS II is a useful, computationally friendly tool for simulations of past climates as well as for future Earth system projections.
Gang Tang, Zebedee Nicholls, Alexander Norton, Sönke Zaehle, and Malte Meinshausen
Geosci. Model Dev., 18, 2193–2230, https://doi.org/10.5194/gmd-18-2193-2025, https://doi.org/10.5194/gmd-18-2193-2025, 2025
Short summary
Short summary
We studied carbon–nitrogen coupling in Earth system models by developing a global carbon–nitrogen cycle model (CNit v1.0) within the widely used emulator MAGICC. CNit effectively reproduced the global carbon–nitrogen cycle dynamics observed in complex models. Our results show persistent nitrogen limitations on plant growth (net primary production) from 1850 to 2100, suggesting that nitrogen deficiency may constrain future land carbon sequestration.
Ngoc Thi Nhu Do, Kengo Sudo, Akihiko Ito, Louisa K. Emmons, Vaishali Naik, Kostas Tsigaridis, Øyvind Seland, Gerd A. Folberth, and Douglas I. Kelley
Geosci. Model Dev., 18, 2079–2109, https://doi.org/10.5194/gmd-18-2079-2025, https://doi.org/10.5194/gmd-18-2079-2025, 2025
Short summary
Short summary
Understanding historical isoprene emission changes is important for predicting future climate, but trends and their controlling factors remain uncertain. This study shows that long-term isoprene trends vary among Earth system models mainly due to partially incorporating CO2 effects and land cover changes rather than to climate. Future models that refine these factors’ effects on isoprene emissions, along with long-term observations, are essential for better understanding plant–climate interactions.
Gang Tang, Zebedee Nicholls, Chris Jones, Thomas Gasser, Alexander Norton, Tilo Ziehn, Alejandro Romero-Prieto, and Malte Meinshausen
Geosci. Model Dev., 18, 2111–2136, https://doi.org/10.5194/gmd-18-2111-2025, https://doi.org/10.5194/gmd-18-2111-2025, 2025
Short summary
Short summary
We analyzed carbon and nitrogen mass conservation in data from various Earth system models. Our findings reveal significant discrepancies between flux and pool size data, where cumulative imbalances can reach hundreds of gigatons of carbon or nitrogen. These imbalances appear primarily due to missing or inconsistently reported fluxes – especially for land-use and fire emissions. To enhance data quality, we recommend that future climate data protocols address this issue at the reporting stage.
Florian Börgel, Sven Karsten, Karoline Rummel, and Ulf Gräwe
Geosci. Model Dev., 18, 2005–2019, https://doi.org/10.5194/gmd-18-2005-2025, https://doi.org/10.5194/gmd-18-2005-2025, 2025
Short summary
Short summary
Forecasting river runoff, which is crucial for managing water resources and understanding climate impacts, can be challenging. This study introduces a new method using convolutional long short-term memory (ConvLSTM) networks, a machine learning model that processes spatial and temporal data. Focusing on the Baltic Sea region, our model uses weather data as input to predict daily river runoff for 97 rivers.
Tao Zhang, Cyril Morcrette, Meng Zhang, Wuyin Lin, Shaocheng Xie, Ye Liu, Kwinten Van Weverberg, and Joana Rodrigues
Geosci. Model Dev., 18, 1917–1928, https://doi.org/10.5194/gmd-18-1917-2025, https://doi.org/10.5194/gmd-18-1917-2025, 2025
Short summary
Short summary
Earth system models (ESMs) struggle with the uncertainties associated with parameterizing subgrid physics. Machine learning (ML) algorithms offer a solution by learning the important relationships and features from high-resolution models. To incorporate ML parameterizations into ESMs, we develop a Fortran–Python interface that allows for calling Python functions within Fortran-based ESMs. Through two case studies, this interface demonstrates its feasibility, modularity, and effectiveness.
Camilla Mathison, Eleanor J. Burke, Gregory Munday, Chris D. Jones, Chris J. Smith, Norman J. Steinert, Andy J. Wiltshire, Chris Huntingford, Eszter Kovacs, Laila K. Gohar, Rebecca M. Varney, and Douglas McNeall
Geosci. Model Dev., 18, 1785–1808, https://doi.org/10.5194/gmd-18-1785-2025, https://doi.org/10.5194/gmd-18-1785-2025, 2025
Short summary
Short summary
We present PRIME (Probabilistic Regional Impacts from Model patterns and Emissions), which is designed to take new emissions scenarios and rapidly provide regional impact information. PRIME allows large ensembles to be run on multi-centennial timescales, including the analysis of many important variables for impact assessments. Our evaluation shows that PRIME reproduces the climate response for known scenarios, providing confidence in using PRIME for novel scenarios.
Katherine M. Smith, Alice M. Barthel, LeAnn M. Conlon, Luke P. Van Roekel, Anthony Bartoletti, Jean-Christophe Golaz, Chengzhu Zhang, Carolyn Branecky Begeman, James J. Benedict, Gautam Bisht, Yan Feng, Walter Hannah, Bryce E. Harrop, Nicole Jeffery, Wuyin Lin, Po-Lun Ma, Mathew E. Maltrud, Mark R. Petersen, Balwinder Singh, Qi Tang, Teklu Tesfa, Jonathan D. Wolfe, Shaocheng Xie, Xue Zheng, Karthik Balaguru, Oluwayemi Garuba, Peter Gleckler, Aixue Hu, Jiwoo Lee, Ben Moore-Maley, and Ana C. Ordoñez
Geosci. Model Dev., 18, 1613–1633, https://doi.org/10.5194/gmd-18-1613-2025, https://doi.org/10.5194/gmd-18-1613-2025, 2025
Short summary
Short summary
Version 2.1 of the U.S. Department of Energy's Energy Exascale Earth System Model (E3SM) adds the Fox-Kemper et al. (2011) mixed-layer eddy parameterization, which restratifies the ocean surface layer through an overturning streamfunction. Results include surface layer bias reduction in temperature, salinity, and sea ice extent in the North Atlantic; a small strengthening of the Atlantic meridional overturning circulation; and improvements to many atmospheric climatological variables.
Huilin Huang, Yun Qian, Gautam Bisht, Jiali Wang, Tirthankar Chakraborty, Dalei Hao, Jianfeng Li, Travis Thurber, Balwinder Singh, Zhao Yang, Ye Liu, Pengfei Xue, William J. Sacks, Ethan Coon, and Robert Hetland
Geosci. Model Dev., 18, 1427–1443, https://doi.org/10.5194/gmd-18-1427-2025, https://doi.org/10.5194/gmd-18-1427-2025, 2025
Short summary
Short summary
We integrate the E3SM Land Model (ELM) with the WRF model through the Lightweight Infrastructure for Land Atmosphere Coupling (LILAC) Earth System Modeling Framework (ESMF). This framework includes a top-level driver, LILAC, for variable communication between WRF and ELM and ESMF caps for ELM initialization, execution, and finalization. The LILAC–ESMF framework maintains the integrity of the ELM's source code structure and facilitates the transfer of future ELM model developments to WRF-ELM.
Michael Nole, Jonah Bartrand, Fawz Naim, and Glenn Hammond
Geosci. Model Dev., 18, 1413–1425, https://doi.org/10.5194/gmd-18-1413-2025, https://doi.org/10.5194/gmd-18-1413-2025, 2025
Short summary
Short summary
Safe carbon dioxide (CO2) storage is likely to be critical for mitigating some of the most severe effects of climate change. We present a simulation framework for modeling CO2 storage beneath the seafloor, where CO2 can form a solid. This can aid in permanent CO2 storage for long periods of time. Our models show what a commercial-scale CO2 injection would look like in a marine environment. We discuss what would need to be considered when designing a subsea CO2 injection.
Reyk Börner, Jan O. Haerter, and Romain Fiévet
Geosci. Model Dev., 18, 1333–1356, https://doi.org/10.5194/gmd-18-1333-2025, https://doi.org/10.5194/gmd-18-1333-2025, 2025
Short summary
Short summary
The daily cycle of sea surface temperature (SST) impacts clouds above the ocean and could influence the clustering of thunderstorms linked to extreme rainfall and hurricanes. However, daily SST variability is often poorly represented in modeling studies of how clouds cluster. We present a simple, wind-responsive model of upper-ocean temperature for use in atmospheric simulations. Evaluating the model against observations, we show that it performs significantly better than common slab models.
Malcolm J. Roberts, Kevin A. Reed, Qing Bao, Joseph J. Barsugli, Suzana J. Camargo, Louis-Philippe Caron, Ping Chang, Cheng-Ta Chen, Hannah M. Christensen, Gokhan Danabasoglu, Ivy Frenger, Neven S. Fučkar, Shabeh ul Hasson, Helene T. Hewitt, Huanping Huang, Daehyun Kim, Chihiro Kodama, Michael Lai, Lai-Yung Ruby Leung, Ryo Mizuta, Paulo Nobre, Pablo Ortega, Dominique Paquin, Christopher D. Roberts, Enrico Scoccimarro, Jon Seddon, Anne Marie Treguier, Chia-Ying Tu, Paul A. Ullrich, Pier Luigi Vidale, Michael F. Wehner, Colin M. Zarzycki, Bosong Zhang, Wei Zhang, and Ming Zhao
Geosci. Model Dev., 18, 1307–1332, https://doi.org/10.5194/gmd-18-1307-2025, https://doi.org/10.5194/gmd-18-1307-2025, 2025
Short summary
Short summary
HighResMIP2 is a model intercomparison project focusing on high-resolution global climate models, that is, those with grid spacings of 25 km or less in the atmosphere and ocean, using simulations of decades to a century in length. We are proposing an update of our simulation protocol to make the models more applicable to key questions for climate variability and hazard in present-day and future projections and to build links with other communities to provide more robust climate information.
Jordi Buckley Paules, Simone Fatichi, Bonnie Warring, and Athanasios Paschalis
Geosci. Model Dev., 18, 1287–1305, https://doi.org/10.5194/gmd-18-1287-2025, https://doi.org/10.5194/gmd-18-1287-2025, 2025
Short summary
Short summary
We present and validate enhancements to the process-based T&C model aimed at improving its representation of crop growth and management practices. The updated model, T&C-CROP, enables applications such as analysing the hydrological and carbon storage impacts of land use transitions (e.g. conversions between crops, forests, and pastures) and optimizing irrigation and fertilization strategies in response to climate change.
Sébastien Masson, Swen Jullien, Eric Maisonnave, David Gill, Guillaume Samson, Mathieu Le Corre, and Lionel Renault
Geosci. Model Dev., 18, 1241–1263, https://doi.org/10.5194/gmd-18-1241-2025, https://doi.org/10.5194/gmd-18-1241-2025, 2025
Short summary
Short summary
This article details a new feature we implemented in the popular regional atmospheric model WRF. This feature allows for data exchange between WRF and any other model (e.g. an ocean model) using the coupling library Ocean–Atmosphere–Sea–Ice–Soil Model Coupling Toolkit (OASIS3-MCT). This coupling interface is designed to be non-intrusive, flexible and modular. It also offers the possibility of taking into account the nested zooms used in WRF or in the models with which it is coupled.
Axel Lauer, Lisa Bock, Birgit Hassler, Patrick Jöckel, Lukas Ruhe, and Manuel Schlund
Geosci. Model Dev., 18, 1169–1188, https://doi.org/10.5194/gmd-18-1169-2025, https://doi.org/10.5194/gmd-18-1169-2025, 2025
Short summary
Short summary
Earth system models are important tools to improve our understanding of current climate and to project climate change. Thus, it is crucial to understand possible shortcomings in the models. New features of the ESMValTool software package allow one to compare and visualize a model's performance with respect to reproducing observations in the context of other climate models in an easy and user-friendly way. We aim to help model developers assess and monitor climate simulations more efficiently.
Ulrich G. Wortmann, Tina Tsan, Mahrukh Niazi, Irene A. Ma, Ruben Navasardyan, Magnus-Roland Marun, Bernardo S. Chede, Jingwen Zhong, and Morgan Wolfe
Geosci. Model Dev., 18, 1155–1167, https://doi.org/10.5194/gmd-18-1155-2025, https://doi.org/10.5194/gmd-18-1155-2025, 2025
Short summary
Short summary
The Earth Science Box Modeling Toolkit (ESBMTK) is a user-friendly Python library that simplifies the creation of models to study earth system processes, such as the carbon cycle and ocean chemistry. It enhances learning by emphasizing concepts over programming and is accessible to students and researchers alike. By automating complex calculations and promoting code clarity, ESBMTK accelerates model development while improving reproducibility and the usability of scientific research.
Florian Zabel, Matthias Knüttel, and Benjamin Poschlod
Geosci. Model Dev., 18, 1067–1087, https://doi.org/10.5194/gmd-18-1067-2025, https://doi.org/10.5194/gmd-18-1067-2025, 2025
Short summary
Short summary
CropSuite is a new open-source crop suitability model. It provides a GUI and a wide range of options, including a spatial downscaling of climate data. We apply CropSuite to 48 staple and opportunity crops at a 1 km spatial resolution in Africa. We find that climate variability significantly impacts suitable areas but also affects optimal sowing dates and multiple cropping potential. The results provide valuable information for climate impact assessments, adaptation, and land-use planning.
Kerstin Hartung, Bastian Kern, Nils-Arne Dreier, Jörn Geisbüsch, Mahnoosh Haghighatnasab, Patrick Jöckel, Astrid Kerkweg, Wilton Jaciel Loch, Florian Prill, and Daniel Rieger
Geosci. Model Dev., 18, 1001–1015, https://doi.org/10.5194/gmd-18-1001-2025, https://doi.org/10.5194/gmd-18-1001-2025, 2025
Short summary
Short summary
The ICOsahedral Non-hydrostatic (ICON) model system Community Interface (ComIn) library supports connecting third-party modules to the ICON model. Third-party modules can range from simple diagnostic Python scripts to full chemistry models. ComIn offers a low barrier for code extensions to ICON, provides multi-language support (Fortran, C/C++, and Python), and reduces the migration effort in response to new ICON releases. This paper presents the ComIn design principles and a range of use cases.
Daniel Ries, Katherine Goode, Kellie McClernon, and Benjamin Hillman
Geosci. Model Dev., 18, 1041–1065, https://doi.org/10.5194/gmd-18-1041-2025, https://doi.org/10.5194/gmd-18-1041-2025, 2025
Short summary
Short summary
Machine learning has advanced research in the climate science domain, but its models are difficult to understand. In order to understand the impacts and consequences of climate interventions such as stratospheric aerosol injection, complex models are often necessary. We use a case study to illustrate how we can understand the inner workings of a complex model. We present this technique as an exploratory tool that can be used to quickly discover and assess relationships in complex climate data.
Bo Dong, Paul Ullrich, Jiwoo Lee, Peter Gleckler, Kristin Chang, and Travis A. O'Brien
Geosci. Model Dev., 18, 961–976, https://doi.org/10.5194/gmd-18-961-2025, https://doi.org/10.5194/gmd-18-961-2025, 2025
Short summary
Short summary
A metrics package designed for easy analysis of atmospheric river (AR) characteristics and statistics is presented. The tool is efficient for diagnosing systematic AR bias in climate models and useful for evaluating new AR characteristics in model simulations. In climate models, landfalling AR precipitation shows dry biases globally, and AR tracks are farther poleward (equatorward) in the North and South Atlantic (South Pacific and Indian Ocean).
Panagiotis Adamidis, Erik Pfister, Hendryk Bockelmann, Dominik Zobel, Jens-Olaf Beismann, and Marek Jacob
Geosci. Model Dev., 18, 905–919, https://doi.org/10.5194/gmd-18-905-2025, https://doi.org/10.5194/gmd-18-905-2025, 2025
Short summary
Short summary
In this paper, we investigated performance indicators of the climate model ICON (ICOsahedral Nonhydrostatic) on different compute architectures to answer the question of how to generate high-resolution climate simulations. Evidently, it is not enough to use more computing units of the conventionally used architectures; higher memory throughput is the most promising approach. More potential can be gained from single-node optimization rather than simply increasing the number of compute nodes.
Kangari Narender Reddy, Somnath Baidya Roy, Sam S. Rabin, Danica L. Lombardozzi, Gudimetla Venkateswara Varma, Ruchira Biswas, and Devavat Chiru Naik
Geosci. Model Dev., 18, 763–785, https://doi.org/10.5194/gmd-18-763-2025, https://doi.org/10.5194/gmd-18-763-2025, 2025
Short summary
Short summary
The study aimed to improve the representation of wheat and rice in a land model for the Indian region. The modified model performed significantly better than the default model in simulating crop phenology, yield, and carbon, water, and energy fluxes compared to observations. The study highlights the need for global land models to use region-specific crop parameters for accurately simulating vegetation processes and land surface processes.
Giovanni Di Virgilio, Fei Ji, Eugene Tam, Jason P. Evans, Jatin Kala, Julia Andrys, Christopher Thomas, Dipayan Choudhury, Carlos Rocha, Yue Li, and Matthew L. Riley
Geosci. Model Dev., 18, 703–724, https://doi.org/10.5194/gmd-18-703-2025, https://doi.org/10.5194/gmd-18-703-2025, 2025
Short summary
Short summary
We evaluate the skill in simulating the Australian climate of some of the latest generation of regional climate models. We show when and where the models simulate this climate with high skill versus model limitations. We show how new models perform relative to the previous-generation models, assessing how model design features may underlie key performance improvements. This work is of national and international relevance as it can help guide the use and interpretation of climate projections.
Giovanni Di Virgilio, Jason P. Evans, Fei Ji, Eugene Tam, Jatin Kala, Julia Andrys, Christopher Thomas, Dipayan Choudhury, Carlos Rocha, Stephen White, Yue Li, Moutassem El Rafei, Rishav Goyal, Matthew L. Riley, and Jyothi Lingala
Geosci. Model Dev., 18, 671–702, https://doi.org/10.5194/gmd-18-671-2025, https://doi.org/10.5194/gmd-18-671-2025, 2025
Short summary
Short summary
We introduce new climate models that simulate Australia’s future climate at regional scales, including at an unprecedented resolution of 4 km for 1950–2100. We describe the model design process used to create these new climate models. We show how the new models perform relative to previous-generation models and compare their climate projections. This work is of national and international relevance as it can help guide climate model design and the use and interpretation of climate projections.
Jiawang Feng, Chun Zhao, Qiuyan Du, Zining Yang, and Chen Jin
Geosci. Model Dev., 18, 585–603, https://doi.org/10.5194/gmd-18-585-2025, https://doi.org/10.5194/gmd-18-585-2025, 2025
Short summary
Short summary
In this study, we improved the calculation of how aerosols in the air interact with radiation in WRF-Chem. The original model used a simplified method, but we developed a more accurate approach. We found that this method significantly changes the properties of the estimated aerosols and their effects on radiation, especially for dust aerosols. It also impacts the simulated weather conditions. Our work highlights the importance of correctly representing aerosol–radiation interactions in models.
Eduardo Moreno-Chamarro, Thomas Arsouze, Mario Acosta, Pierre-Antoine Bretonnière, Miguel Castrillo, Eric Ferrer, Amanda Frigola, Daria Kuznetsova, Eneko Martin-Martinez, Pablo Ortega, and Sergi Palomas
Geosci. Model Dev., 18, 461–482, https://doi.org/10.5194/gmd-18-461-2025, https://doi.org/10.5194/gmd-18-461-2025, 2025
Short summary
Short summary
We present the high-resolution model version of the EC-Earth global climate model to contribute to HighResMIP. The combined model resolution is about 10–15 km in both the ocean and atmosphere, which makes it one of the finest ever used to complete historical and scenario simulations. This model is compared with two lower-resolution versions, with a 100 km and a 25 km grid. The three models are compared with observations to study the improvements thanks to the increased resolution.
Catherine Guiavarc'h, David Storkey, Adam T. Blaker, Ed Blockley, Alex Megann, Helene Hewitt, Michael J. Bell, Daley Calvert, Dan Copsey, Bablu Sinha, Sophia Moreton, Pierre Mathiot, and Bo An
Geosci. Model Dev., 18, 377–403, https://doi.org/10.5194/gmd-18-377-2025, https://doi.org/10.5194/gmd-18-377-2025, 2025
Short summary
Short summary
The Global Ocean and Sea Ice configuration version 9 (GOSI9) is the new UK hierarchy of model configurations based on the Nucleus for European Modelling of the Ocean (NEMO) and available at three resolutions. It will be used for various applications, e.g. weather forecasting and climate prediction. It improves upon the previous version by reducing global temperature and salinity biases and enhancing the representation of Arctic sea ice and the Antarctic Circumpolar Current.
Andy Richling, Jens Grieger, and Henning W. Rust
Geosci. Model Dev., 18, 361–375, https://doi.org/10.5194/gmd-18-361-2025, https://doi.org/10.5194/gmd-18-361-2025, 2025
Short summary
Short summary
The performance of weather and climate prediction systems is variable in time and space. It is of interest how this performance varies in different situations. We provide a decomposition of a skill score (a measure of forecast performance) as a tool for detailed assessment of performance variability to support model development or forecast improvement. The framework is exemplified with decadal forecasts to assess the impact of different ocean states in the North Atlantic on temperature forecast.
Maria R. Russo, Sadie L. Bartholomew, David Hassell, Alex M. Mason, Erica Neininger, A. James Perman, David A. J. Sproson, Duncan Watson-Parris, and Nathan Luke Abraham
Geosci. Model Dev., 18, 181–191, https://doi.org/10.5194/gmd-18-181-2025, https://doi.org/10.5194/gmd-18-181-2025, 2025
Short summary
Short summary
Observational data and modelling capabilities have expanded in recent years, but there are still barriers preventing these two data sources from being used in synergy. Proper comparison requires generating, storing, and handling a large amount of data. This work describes the first step in the development of a new set of software tools, the VISION toolkit, which can enable the easy and efficient integration of observational and model data required for model evaluation.
Bijan Fallah, Masoud Rostami, Emmanuele Russo, Paula Harder, Christoph Menz, Peter Hoffmann, Iulii Didovets, and Fred F. Hattermann
Geosci. Model Dev., 18, 161–180, https://doi.org/10.5194/gmd-18-161-2025, https://doi.org/10.5194/gmd-18-161-2025, 2025
Short summary
Short summary
We tried to contribute to a local climate change impact study in central Asia, a region that is water-scarce and vulnerable to global climate change. We use regional models and machine learning to produce reliable local data from global climate models. We find that regional models show more realistic and detailed changes in heavy precipitation than global climate models. Our work can help assess the future risks of extreme events and plan adaptation strategies in central Asia.
Manuel Schlund, Bouwe Andela, Jörg Benke, Ruth Comer, Birgit Hassler, Emma Hogan, Peter Kalverla, Axel Lauer, Bill Little, Saskia Loosveldt Tomas, Francesco Nattino, Patrick Peglar, Valeriu Predoi, Stef Smeets, Stephen Worsley, Martin Yeo, and Klaus Zimmermann
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-236, https://doi.org/10.5194/gmd-2024-236, 2025
Revised manuscript accepted for GMD
Short summary
Short summary
The Earth System Model Evaluation Tool (ESMValTool) is a community diagnostics and performance metrics tool for the evaluation of Earth system models. Here, we describe recent significant improvements of ESMValTool’s computational efficiency including parallel, out-of-core, and distributed computing. Evaluations with the enhanced version of ESMValTool are faster, use less computational resources, and can handle input data larger than the available memory.
Thomas Rackow, Xabier Pedruzo-Bagazgoitia, Tobias Becker, Sebastian Milinski, Irina Sandu, Razvan Aguridan, Peter Bechtold, Sebastian Beyer, Jean Bidlot, Souhail Boussetta, Willem Deconinck, Michail Diamantakis, Peter Dueben, Emanuel Dutra, Richard Forbes, Rohit Ghosh, Helge F. Goessling, Ioan Hadade, Jan Hegewald, Thomas Jung, Sarah Keeley, Lukas Kluft, Nikolay Koldunov, Aleksei Koldunov, Tobias Kölling, Josh Kousal, Christian Kühnlein, Pedro Maciel, Kristian Mogensen, Tiago Quintino, Inna Polichtchouk, Balthasar Reuter, Domokos Sármány, Patrick Scholz, Dmitry Sidorenko, Jan Streffing, Birgit Sützl, Daisuke Takasuka, Steffen Tietsche, Mirco Valentini, Benoît Vannière, Nils Wedi, Lorenzo Zampieri, and Florian Ziemen
Geosci. Model Dev., 18, 33–69, https://doi.org/10.5194/gmd-18-33-2025, https://doi.org/10.5194/gmd-18-33-2025, 2025
Short summary
Short summary
Detailed global climate model simulations have been created based on a numerical weather prediction model, offering more accurate spatial detail down to the scale of individual cities ("kilometre-scale") and a better understanding of climate phenomena such as atmospheric storms, whirls in the ocean, and cracks in sea ice. The new model aims to provide globally consistent information on local climate change with greater precision, benefiting environmental planning and local impact modelling.
Yilin Fang, Hoang Viet Tran, and L. Ruby Leung
Geosci. Model Dev., 18, 19–32, https://doi.org/10.5194/gmd-18-19-2025, https://doi.org/10.5194/gmd-18-19-2025, 2025
Short summary
Short summary
Hurricanes may worsen water quality in the lower Mississippi River basin (LMRB) by increasing nutrient runoff. We found that runoff parameterizations greatly affect nitrate–nitrogen runoff simulated using an Earth system land model. Our simulations predicted increased nitrogen runoff in the LMRB during Hurricane Ida in 2021, albeit less pronounced than the observations, indicating areas for model improvement to better understand and manage nutrient runoff loss during hurricanes in the region.
Giovanni Seijo-Ellis, Donata Giglio, Gustavo Marques, and Frank Bryan
Geosci. Model Dev., 17, 8989–9021, https://doi.org/10.5194/gmd-17-8989-2024, https://doi.org/10.5194/gmd-17-8989-2024, 2024
Short summary
Short summary
A CESM–MOM6 regional configuration of the Caribbean Sea was developed in response to the rising need for high-resolution models for climate impact studies. The configuration is validated for the period 2000–2020 and improves significant errors in a low-resolution model. Oceanic properties are well represented. Patterns of freshwater associated with the Amazon River are well captured, and the mean flows of ocean waters across multiple passages in the Caribbean Sea agree with observations.
Yan Bo, Hao Liang, Tao Li, and Feng Zhou
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2024-212, https://doi.org/10.5194/gmd-2024-212, 2024
Revised manuscript accepted for GMD
Short summary
Short summary
This study proposed an advancing framework for modeling regional rice production, water use, and greenhouse gas emissions. The framework integrated a process-based soil-crop model with key physiological effects, a novel model upscaling method, and the NSGA-II multi-objective optimization algorithm at a parallel computing platform. The framework provides a valuable tool for irrigation optimization to deliver co-benefits of ensuring food production, reducing water use and greenhouse gas emissions.
Deifilia To, Julian Quinting, Gholam Ali Hoshyaripour, Markus Götz, Achim Streit, and Charlotte Debus
Geosci. Model Dev., 17, 8873–8884, https://doi.org/10.5194/gmd-17-8873-2024, https://doi.org/10.5194/gmd-17-8873-2024, 2024
Short summary
Short summary
Pangu-Weather is a breakthrough machine learning model in medium-range weather forecasting that considers 3D atmospheric information. We show that using a simpler 2D framework improves robustness, speeds up training, and reduces computational needs by 20 %–30 %. We introduce a training procedure that varies the importance of atmospheric variables over time to speed up training convergence. Decreasing computational demand increases the accessibility of training and working with the model.
Fang Li, Xiang Song, Sandy P. Harrison, Jennifer R. Marlon, Zhongda Lin, L. Ruby Leung, Jörg Schwinger, Virginie Marécal, Shiyu Wang, Daniel S. Ward, Xiao Dong, Hanna Lee, Lars Nieradzik, Sam S. Rabin, and Roland Séférian
Geosci. Model Dev., 17, 8751–8771, https://doi.org/10.5194/gmd-17-8751-2024, https://doi.org/10.5194/gmd-17-8751-2024, 2024
Short summary
Short summary
This study provides the first comprehensive assessment of historical fire simulations from 19 Earth system models in phase 6 of the Coupled Model Intercomparison Project (CMIP6). Most models reproduce global totals, spatial patterns, seasonality, and regional historical changes well but fail to simulate the recent decline in global burned area and underestimate the fire response to climate variability. CMIP6 simulations address three critical issues of phase-5 models.
Seung H. Baek, Paul A. Ullrich, Bo Dong, and Jiwoo Lee
Geosci. Model Dev., 17, 8665–8681, https://doi.org/10.5194/gmd-17-8665-2024, https://doi.org/10.5194/gmd-17-8665-2024, 2024
Short summary
Short summary
We evaluate downscaled products by examining locally relevant co-variances during precipitation events. Common statistical downscaling techniques preserve expected co-variances during convective precipitation (a stationary phenomenon). However, they dampen future intensification of frontal precipitation (a non-stationary phenomenon) captured in global climate models and dynamical downscaling. Our study quantifies a ramification of the stationarity assumption underlying statistical downscaling.
Emmanuel Nyenah, Petra Döll, Daniel S. Katz, and Robert Reinecke
Geosci. Model Dev., 17, 8593–8611, https://doi.org/10.5194/gmd-17-8593-2024, https://doi.org/10.5194/gmd-17-8593-2024, 2024
Short summary
Short summary
Research software is vital for scientific progress but is often developed by scientists with limited skills, time, and funding, leading to challenges in usability and maintenance. Our study across 10 sectors shows strengths in version control, open-source licensing, and documentation while emphasizing the need for containerization and code quality. We recommend workshops; code quality metrics; funding; and following the findable, accessible, interoperable, and reusable (FAIR) standards.
Chris Smith, Donald P. Cummins, Hege-Beate Fredriksen, Zebedee Nicholls, Malte Meinshausen, Myles Allen, Stuart Jenkins, Nicholas Leach, Camilla Mathison, and Antti-Ilari Partanen
Geosci. Model Dev., 17, 8569–8592, https://doi.org/10.5194/gmd-17-8569-2024, https://doi.org/10.5194/gmd-17-8569-2024, 2024
Short summary
Short summary
Climate projections are only useful if the underlying models that produce them are well calibrated and can reproduce observed climate change. We formalise a software package that calibrates the open-source FaIR simple climate model to full-complexity Earth system models. Observations, including historical warming, and assessments of key climate variables such as that of climate sensitivity are used to constrain the model output.
Jingwei Xie, Xi Wang, Hailong Liu, Pengfei Lin, Jiangfeng Yu, Zipeng Yu, Junlin Wei, and Xiang Han
Geosci. Model Dev., 17, 8469–8493, https://doi.org/10.5194/gmd-17-8469-2024, https://doi.org/10.5194/gmd-17-8469-2024, 2024
Short summary
Short summary
We propose the concept of mesoscale ocean direct numerical simulation (MODNS), which should resolve the first baroclinic deformation radius and ensure the numerical dissipative effects do not directly contaminate the mesoscale motions. It can be a benchmark for testing mesoscale ocean large eddy simulation (MOLES) methods in ocean models. We build an idealized Southern Ocean model using MITgcm to generate a type of MODNS. We also illustrate the diversity of multiscale eddy interactions.
Emily Black, John Ellis, and Ross I. Maidment
Geosci. Model Dev., 17, 8353–8372, https://doi.org/10.5194/gmd-17-8353-2024, https://doi.org/10.5194/gmd-17-8353-2024, 2024
Short summary
Short summary
We present General TAMSAT-ALERT, a computationally lightweight and versatile tool for generating ensemble forecasts from time series data. General TAMSAT-ALERT is capable of combining multiple streams of monitoring and meteorological forecasting data into probabilistic hazard assessments. In this way, it complements existing systems and enhances their utility for actionable hazard assessment.
Sarah Schöngart, Lukas Gudmundsson, Mathias Hauser, Peter Pfleiderer, Quentin Lejeune, Shruti Nath, Sonia Isabelle Seneviratne, and Carl-Friedrich Schleussner
Geosci. Model Dev., 17, 8283–8320, https://doi.org/10.5194/gmd-17-8283-2024, https://doi.org/10.5194/gmd-17-8283-2024, 2024
Short summary
Short summary
Precipitation and temperature are two of the most impact-relevant climatic variables. Yet, projecting future precipitation and temperature data under different emission scenarios relies on complex models that are computationally expensive. In this study, we propose a method that allows us to generate monthly means of local precipitation and temperature at low computational costs. Our modelling framework is particularly useful for all downstream applications of climate model data.
Benjamin M. Sanderson, Ben B. B. Booth, John Dunne, Veronika Eyring, Rosie A. Fisher, Pierre Friedlingstein, Matthew J. Gidden, Tomohiro Hajima, Chris D. Jones, Colin G. Jones, Andrew King, Charles D. Koven, David M. Lawrence, Jason Lowe, Nadine Mengis, Glen P. Peters, Joeri Rogelj, Chris Smith, Abigail C. Snyder, Isla R. Simpson, Abigail L. S. Swann, Claudia Tebaldi, Tatiana Ilyina, Carl-Friedrich Schleussner, Roland Séférian, Bjørn H. Samset, Detlef van Vuuren, and Sönke Zaehle
Geosci. Model Dev., 17, 8141–8172, https://doi.org/10.5194/gmd-17-8141-2024, https://doi.org/10.5194/gmd-17-8141-2024, 2024
Short summary
Short summary
We discuss how, in order to provide more relevant guidance for climate policy, coordinated climate experiments should adopt a greater focus on simulations where Earth system models are provided with carbon emissions from fossil fuels together with land use change instructions, rather than past approaches that have largely focused on experiments with prescribed atmospheric carbon dioxide concentrations. We discuss how these goals might be achieved in coordinated climate modeling experiments.
Peter Berg, Thomas Bosshard, Denica Bozhinova, Lars Bärring, Joakim Löw, Carolina Nilsson, Gustav Strandberg, Johan Södling, Johan Thuresson, Renate Wilcke, and Wei Yang
Geosci. Model Dev., 17, 8173–8179, https://doi.org/10.5194/gmd-17-8173-2024, https://doi.org/10.5194/gmd-17-8173-2024, 2024
Short summary
Short summary
When bias adjusting climate model data using quantile mapping, one needs to prescribe what to do at the tails of the distribution, where a larger data range is likely encountered outside of the calibration period. The end result is highly dependent on the method used. We show that, to avoid discontinuities in the time series, one needs to exclude data in the calibration range to also activate the extrapolation functionality in that time period.
Philip J. Rasch, Haruki Hirasawa, Mingxuan Wu, Sarah J. Doherty, Robert Wood, Hailong Wang, Andy Jones, James Haywood, and Hansi Singh
Geosci. Model Dev., 17, 7963–7994, https://doi.org/10.5194/gmd-17-7963-2024, https://doi.org/10.5194/gmd-17-7963-2024, 2024
Short summary
Short summary
We introduce a protocol to compare computer climate simulations to better understand a proposed strategy intended to counter warming and climate impacts from greenhouse gas increases. This slightly changes clouds in six ocean regions to reflect more sunlight and cool the Earth. Example changes in clouds and climate are shown for three climate models. Cloud changes differ between the models, but precipitation and surface temperature changes are similar when their cooling effects are made similar.
Trude Eidhammer, Andrew Gettelman, Katherine Thayer-Calder, Duncan Watson-Parris, Gregory Elsaesser, Hugh Morrison, Marcus van Lier-Walqui, Ci Song, and Daniel McCoy
Geosci. Model Dev., 17, 7835–7853, https://doi.org/10.5194/gmd-17-7835-2024, https://doi.org/10.5194/gmd-17-7835-2024, 2024
Short summary
Short summary
We describe a dataset where 45 parameters related to cloud processes in the Community Earth System Model version 2 (CESM2) Community Atmosphere Model version 6 (CAM6) are perturbed. Three sets of perturbed parameter ensembles (263 members) were created: current climate, preindustrial aerosol loading and future climate with sea surface temperature increased by 4 K.
Ha Thi Minh Ho-Hagemann, Vera Maurer, Stefan Poll, and Irina Fast
Geosci. Model Dev., 17, 7815–7834, https://doi.org/10.5194/gmd-17-7815-2024, https://doi.org/10.5194/gmd-17-7815-2024, 2024
Short summary
Short summary
The regional Earth system model GCOAST-AHOI v2.0 that includes the regional climate model ICON-CLM coupled to the ocean model NEMO and the hydrological discharge model HD via the OASIS3-MCT coupler can be a useful tool for conducting long-term regional climate simulations over the EURO-CORDEX domain. The new OASIS3-MCT coupling interface implemented in ICON-CLM makes it more flexible for coupling to an external ocean model and an external hydrological discharge model.
Sandro Vattioni, Rahel Weber, Aryeh Feinberg, Andrea Stenke, John A. Dykema, Beiping Luo, Georgios A. Kelesidis, Christian A. Bruun, Timofei Sukhodolov, Frank N. Keutsch, Thomas Peter, and Gabriel Chiodo
Geosci. Model Dev., 17, 7767–7793, https://doi.org/10.5194/gmd-17-7767-2024, https://doi.org/10.5194/gmd-17-7767-2024, 2024
Short summary
Short summary
We quantified impacts and efficiency of stratospheric solar climate intervention via solid particle injection. Microphysical interactions of solid particles with the sulfur cycle were interactively coupled to the heterogeneous chemistry scheme and the radiative transfer code of an aerosol–chemistry–climate model. Compared to injection of SO2 we only find a stronger cooling efficiency for solid particles when normalizing to the aerosol load but not when normalizing to the injection rate.
Cited articles
Ahlström, A., Smith, B., Lindström, J., Rummukainen, M., and Uvo, C. B.: GCM characteristics explain the majority of uncertainty in projected 21st century terrestrial ecosystem carbon balance, Biogeosciences, 10, 1517–1528, https://doi.org/10.5194/bg-10-1517-2013, 2013.
Ahrens, B., Braakhekke, M. C., Guggenberger, G., Schrumpf, M., and
Reichstein, M.: Contribution of sorption, DOC transport and microbial
interactions to the C-14 age of a soil organic carbon profile: Insights from
a calibrated process model, Soil. Biol. Biochem., 88, 390–402, 2015.
Berardi, D., Brzostek, E., Blanc-Betes, E., Davison, B., DeLucia, E. H.,
Hartman, M. D., Kent, J., Parton, W. J., Saha, D., and Hudiburg, T. W.:
21st-century biogeochemical modeling: Challenges for Century-based models
and where do we go from here?, GCB Bioenergy, 1–15, https://doi.org/10.1111/gcbb.12730, 2020.
Bergstra, J. and Bengio, Y.: Random Search for Hyper-Parameter Optimization,
J. Mach. Learn. Res., 13, 281–305, 2012.
Burrows, S. M., Maltrud, M., Yang, X., Zhu, Q., Jeffery, N., Shi, X.,
Ricciuto, D., Wang, S., Bisht, G., Tang, J., Wolfe, J., Harrop, B. E.,
Singh, B., Brent, L., Baldwin, S., Zhou, T., Cameron-Smith, P., Keen, N.,
Collier, N., Xu, M., Hunke, E. C., Elliott, S. M., Turner, A. K., Li, H.,
Wang, H., Golaz, J. C., Bond-Lamberty, B., Hoffman, F. M., Riley, W. J.,
Thornton, P. E., Calvin, K., and Leung, L. R.: The DOE E3SM v1.1
Biogeochemistry Configuration: Description and Simulated Ecosystem-Climate
Responses to Historical Changes in Forcing, J. Adv. Model. Earth. Sy., 12, e2019MS001766, https://doi.org/10.1029/2019MS001766, 2020.
Collier, N., Hoffman, F. M., Lawrence, D. M., Keppel-Aleks, G., Koven, C.
D., Riley, W. J., Mu, M. Q., and Randerson, J. T.: The International Land
Model Benchmarking (ILAMB) System: Design, Theory, and Implementation, J. Adv. Model. Earth. Sy., 10, 2731–2754, 2018.
Davies-Barnard, T., Meyerholt, J., Zaehle, S., Friedlingstein, P., Brovkin, V., Fan, Y., Fisher, R. A., Jones, C. D., Lee, H., Peano, D., Smith, B., Wårlind, D., and Wiltshire, A. J.: Nitrogen cycling in CMIP6 land surface models: progress and limitations, Biogeosciences, 17, 5129–5148, https://doi.org/10.5194/bg-17-5129-2020, 2020.
Dwivedi, D., Riley, W. J., Torn, M. S., Spycher, N., Maggi, F., and Tang, J.
Y.: Mineral properties, microbes, transport, and plant-input profiles
control vertical distribution and age of soil carbon stocks, Soil. Biol.
Biochem., 107, 244–259, 2017.
Fisher, R. A. and Koven, C. D.: Perspectives on the Future of Land Surface
Models and the Challenges of Representing Complex Terrestrial Systems, J. Adv. Model. Earth. Sy., 12, e2018MS001453, https://doi.org/10.1029/2018MS001453, 2020.
Golaz, J. C., Caldwell, P. M., Van Roekel, L. P., Petersen, M. R., Tang, Q.,
Wolfe, J. D., Abeshu, G., Anantharaj, V., Asay-Davis, X. S., Bader, D. C.,
Baldwin, S. A., Bisht, G., Bogenschutz, P. A., Branstetter, M., Brunke, M.
A., Brus, S. R., Burrows, S. M., Cameron-Smith, P. J., Donahue, A. S.,
Deakin, M., Easter, R. C., Evans, K. J., Feng, Y., Flanner, M., Foucar, J.
G., Fyke, J. G., Griffin, B. M., Hannay, C., Harrop, B. E., Hoffman, M. J.,
Hunke, E. C., Jacob, R. L., Jacobsen, D. W., Jeffery, N., Jones, P. W.,
Keen, N. D., Klein, S. A., Larson, V. E., Leung, L. R., Li, H. Y., Lin, W.
Y., Lipscomb, W. H., Ma, P. L., Mahajan, S., Maltrud, M. E., Mametjanov, A.,
McClean, J. L., McCoy, R. B., Neale, R. B., Price, S. F., Qian, Y., Rasch,
P. J., Eyre, J. E. J. R., Riley, W. J., Ringler, T. D., Roberts, A. F.,
Roesler, E. L., Salinger, A. G., Shaheen, Z., Shi, X. Y., Singh, B., Tang,
J. Y., Taylor, M. A., Thornton, P. E., Turner, A. K., Veneziani, M., Wan,
H., Wang, H. L., Wang, S. L., Williams, D. N., Wolfram, P. J., Worley, P.
H., Xie, S. C., Yang, Y., Yoon, J. H., Zelinka, M. D., Zender, C. S., Zeng,
X. B., Zhang, C. Z., Zhang, K., Zhang, Y., Zheng, X., Zhou, T., and Zhu, Q.:
The DOE E3SM Coupled Model Version 1: Overview and Evaluation at Standard
Resolution, J. Adv. Model. Earth. Sy., 11, 2089–2129, 2019.
Grant, R. F.: Modelling changes in nitrogen cycling to sustain increases in forest productivity under elevated atmospheric CO2 and contrasting site conditions, Biogeosciences, 10, 7703–7721, https://doi.org/10.5194/bg-10-7703-2013, 2013.
Gross, M., Wan, H., Rasch, P. J., Caldwell, P. M., Williamson, D. L.,
Klocke, D., Jablonowski, C., Thatcher, D. R., Wood, N., Cullen, M., Beare,
B., Willett, M., Lemarie, F., Blayo, E., Malardel, S., Termonia, P.,
Gassmann, A., Lauritzen, P. H., Johansen, H., Zarzycki, C. M., Sakaguchi,
K., and Leung, R.: Physics-Dynamics Coupling in Weather, Climate, and Earth
System Models: Challenges and Recent Progress, Mon. Weather Rev., 146,
3505–3544, 2018.
Hirano, T., Kim, H., and Tanaka, Y.: Long-term half-hourly measurement of
soil CO2 concentration and soil respiration in a temperate deciduous forest, J. Geophys. Res.-Atmos., 108, 4631, https://doi.org/10.1029/2003JD003766, 2003.
Hoffman, F. M., Randerson, J. T., Arora, V. K., Bao, Q., Cadule, P., Ji, D.,
Jones, C. D., Kawamiya, M., Khatiwala, S., Lindsay, K., Obata, A.,
Shevliakova, E., Six, K. D., Tjiputra, J. F., Volodin, E. M., and Wu, T.:
Causes and implications of persistent atmospheric carbon dioxide biases in
Earth System Models, J. Geophys. Res.-Biogeo., 119, 141–162, 2014.
Huntzinger, D. N., Michalak, A. M., Schwalm, C., Ciais, P., King, A. W.,
Fang, Y., Schaefer, K., Wei, Y., Cook, R. B., Fisher, J. B., Hayes, D.,
Huang, M., Ito, A., Jain, A. K., Lei, H., Lu, C., Maignan, F., Mao, J.,
Parazoo, N., Peng, S., Poulter, B., Ricciuto, D., Shi, X., Tian, H., Wang,
W., Zeng, N., and Zhao, F.: Uncertainty in the response of terrestrial
carbon sink to environmental drivers undermines carbon-climate feedback
predictions, Sci. Rep.-UK, 7, 4765, https://doi.org/10.1038/s41598-017-03818-2, 2017.
Hurrell, J. W., Holland, M. M., Gent, P. R., Ghan, S., Kay, J. E., Kushner,
P. J., Lamarque, J. F., Large, W. G., Lawrence, D., Lindsay, K., Lipscomb,
W. H., Long, M. C., Mahowald, N., Marsh, D. R., Neale, R. B., Rasch, P.,
Vavrus, S., Vertenstein, M., Bader, D., Collins, W. D., Hack, J. J., Kiehl,
J., and Marshall, S.: The Community Earth System Model A Framework for
Collaborative Research, B. Am. Meteorol. Soc., 94, 1339–1360, 2013.
Jarvis, N. J., Taylor, A., Larsbo, M., Etana, A., and Rosen, K.: Modelling
the effects of bioturbation on the re-distribution of 137Cs in an
undisturbed grassland soil, Eur. J. Soil. Sci., 61, 24–34, 2010.
Jung, M., Reichstein, M., Schwalm, C. R., Huntingford, C., Sitch, S.,
Ahlstrom, A., Arneth, A., Camps-Valls, G., Ciais, P., Friedlingstein, P.,
Gans, F., Ichii, K., Ain, A. K. J., Kato, E., Papale, D., Poulter, B.,
Raduly, B., Rodenbeck, C., Tramontana, G., Viovy, N., Wang, Y. P., Weber,
U., Zaehle, S., and Zeng, N.: Compensatory water effects link yearly global
land CO2 sink changes to temperature, Nature, 541, 516–520, 2017.
Koven, C., Friedlingstein, P., Ciais, P., Khvorostyanov, D., Krinner, G.,
and Tarnocai, C.: On the formation of high-latitude soil carbon stocks:
Effects of cryoturbation and insulation by organic matter in a land surface
model, Geophys. Res. Lett., 36, L21501, https://doi.org/10.1029/2009GL040150, 2009.
Koven, C. D., Riley, W. J., Subin, Z. M., Tang, J. Y., Torn, M. S., Collins, W. D., Bonan, G. B., Lawrence, D. M., and Swenson, S. C.: The effect of vertically resolved soil biogeochemistry and alternate soil C and N models on C dynamics of CLM4, Biogeosciences, 10, 7109–7131, https://doi.org/10.5194/bg-10-7109-2013, 2013.
Kumar, A., Jaiswal, D. K., and Kumar, N.: Analytical solutions of
one-dimensional advection-diffusion equation with variable coefficients in a
finite domain, J. Earth. Syst. Sci., 118, 539–549, 2009.
Le Quéré, C., Andrew, R. M., Canadell, J. G., Sitch, S., Korsbakken, J. I., Peters, G. P., Manning, A. C., Boden, T. A., Tans, P. P., Houghton, R. A., Keeling, R. F., Alin, S., Andrews, O. D., Anthoni, P., Barbero, L., Bopp, L., Chevallier, F., Chini, L. P., Ciais, P., Currie, K., Delire, C., Doney, S. C., Friedlingstein, P., Gkritzalis, T., Harris, I., Hauck, J., Haverd, V., Hoppema, M., Klein Goldewijk, K., Jain, A. K., Kato, E., Körtzinger, A., Landschützer, P., Lefèvre, N., Lenton, A., Lienert, S., Lombardozzi, D., Melton, J. R., Metzl, N., Millero, F., Monteiro, P. M. S., Munro, D. R., Nabel, J. E. M. S., Nakaoka, S., O'Brien, K., Olsen, A., Omar, A. M., Ono, T., Pierrot, D., Poulter, B., Rödenbeck, C., Salisbury, J., Schuster, U., Schwinger, J., Séférian, R., Skjelvan, I., Stocker, B. D., Sutton, A. J., Takahashi, T., Tian, H., Tilbrook, B., van der Laan-Luijkx, I. T., van der Werf, G. R., Viovy, N., Walker, A. P., Wiltshire, A. J., and Zaehle, S.: Global Carbon Budget 2016, Earth Syst. Sci. Data, 8, 605–649, https://doi.org/10.5194/essd-8-605-2016, 2016.
Luo, Y. Q., Randerson, J. T., Abramowitz, G., Bacour, C., Blyth, E., Carvalhais, N., Ciais, P., Dalmonech, D., Fisher, J. B., Fisher, R., Friedlingstein, P., Hibbard, K., Hoffman, F., Huntzinger, D., Jones, C. D., Koven, C., Lawrence, D., Li, D. J., Mahecha, M., Niu, S. L., Norby, R., Piao, S. L., Qi, X., Peylin, P., Prentice, I. C., Riley, W., Reichstein, M., Schwalm, C., Wang, Y. P., Xia, J. Y., Zaehle, S., and Zhou, X. H.: A framework for benchmarking land models, Biogeosciences, 9, 3857–3874, https://doi.org/10.5194/bg-9-3857-2012, 2012.
Manson, J. R. and Wallis, S. G.: A conservative, semi-Lagrangian fate and
transport model for fluvial systems – I. Theoretical development, Water Res., 34, 3769–3777, 2000.
Medvigy, D., Wang, G. S., Zhu, Q., Riley, W. J., Trierweiler, A. M., Waring,
B. G., Xu, X. T., and Powers, J. S.: Observed variation in soil properties
can drive large variation in modelled forest functioning and composition
during tropical forest secondary succession, New Phytol., 223, 1820–1833,
2019.
Munhoven, G.: Model of Early Diagenesis in the Upper Sediment with Adaptable complexity – MEDUSA (v. 2): a time-dependent biogeochemical sediment module for Earth system models, process analysis and teaching, Geosci. Model Dev., 14, 3603–3631, https://doi.org/10.5194/gmd-14-3603-2021, 2021.
Oleson, K. W., Lawrence, D. M., Bonan, G. B., Drewniak, B., Huang, M.,
Koven, C. D., Levis, S., Li, F., Riley, W. J., Subin, Z. M., Swenson, S. C.,
Thornton, P. E., Bozbiyik, A., Fisher, R., Heald, C. L., Kluzek, E.,
Lamarque, J. F., Lawrence, P. J., Leung, L. R., Lipscomb, W. H., Muszala,
S., Ricciuto, D. M., Sacks, W., Sun, Y., Tang, J. Y., and Yang, Z.:
Technical Description of version 4.5 of the Community Land Model (CLM),
National Center for Atmospheric Research, Boulder, Colorado, NCAR/TN-503+STR, https://doi.org/10.5065/D6RR1W7M, 2013.
Petrovskii, S. and Petrovskaya, N.: Computational ecology as an emerging
science, Interface Focus, 2, 241–254, 2012.
Riley, W. J., Zhu, Q., and Tang, J. Y.: Weaker land-climate feedbacks from
nutrient uptake during photosynthesis-inactive periods, Nat. Clim. Change., 8, 1002–1006, 2018.
Riley, W. J., Sierra, C., Tang, J. Y., Bouskill, N. J., Zhu, Q., and
Abramoff, R.: Next generation soil biogeochemistry model representations: A
proposed community open source model farm (BeTR-S), in: Multi-scale
Biogeochemical Processes in Soil Ecosystems: Critical Reactions and
Resilience to Climate Changes, edited by: Yang, Y., Keiluweit, M., Senesi, N., and Xing, B., John Wiley & Sons, Inc, 233–257,
ISBN 9781119480433, 2022.
rubisco-sfa: ILAMB, GitHub [code], https://github.com/rubisco-sfa/ILAMB (last access: 23 February 2022), 2021.
Simpson, M. J. and Landman, K. A.: Analysis of split operator methods
applied to reactive transport with Monod kinetics, Adv. Water Resour., 30,
2026–2033, 2007.
Tang, J. Y.: BeTR-biogeochemistry-modeling/sbetr: New release after bgc update with elm, Zenodo [data set], https://doi.org/10.5281/zenodo.5526854, 2021.
Tang, J. Y.: v1.0.0 jinyuntang/E3SM: ELMv1-BeTR-ECA for BeTR-v2 paper, Zenodo [data set], https://doi.org/10.5281/zenodo.6233165, 2022.
Tang, J. Y. and Riley, W. J.: A total quasi-steady-state formulation of substrate uptake kinetics in complex networks and an example application to microbial litter decomposition, Biogeosciences, 10, 8329–8351, https://doi.org/10.5194/bg-10-8329-2013, 2013.
Tang, J. Y. and Riley, W. J.: Technical Note: Simple formulations and solutions of the dual-phase diffusive transport for biogeochemical modeling, Biogeosciences, 11, 3721–3728, https://doi.org/10.5194/bg-11-3721-2014, 2014.
Tang, J. Y. and Riley, W. J.: Technical Note: A generic law-of-the-minimum flux limiter for simulating substrate limitation in biogeochemical models, Biogeosciences, 13, 723–735, https://doi.org/10.5194/bg-13-723-2016, 2016.
Tang, J. Y. and Riley, W. J.: Predicted Land Carbon Dynamics Are Strongly
Dependent on the Numerical Coupling of Nitrogen Mobilizing and Immobilizing
Processes: A Demonstration with the E3SM Land Model, Earth Interact., 22, 11, https://doi.org/10.1175/EI-D-17-0023.1, 2018.
Tang, J. Y. and Riley, W. J.: Linear two-pool models are insufficient to
infer soil organic matter decomposition temperature sensitivity from
incubations, Biogeochemistry, 149, 251–261, 2020.
Tang, J. Y. and Riley, W. J.: On the modeling paradigm of plant root
nutrient acquisition, Plant Soil, 459, 441–451, 2021.
Tang, J., Zhuang, Q., Shannon, R. D., and White, J. R.: Quantifying wetland methane emissions with process-based models of different complexities, Biogeosciences, 7, 3817–3837, https://doi.org/10.5194/bg-7-3817-2010, 2010.
Tang, J. Y., Riley, W. J., Koven, C. D., and Subin, Z. M.: CLM4-BeTR, a generic biogeochemical transport and reaction module for CLM4: model development, evaluation, and application, Geosci. Model Dev., 6, 127–140, https://doi.org/10.5194/gmd-6-127-2013, 2013.
Tang, J. Y., Riley, W. J., and Niu, J.: Incorporating root hydraulic
redistribution in CLM4.5: Effects on predicted site and global
evapotranspiration, soil moisture, and water storage, J. Adv. Model. Earth. Sy., 7, 1828–1848, 2015.
Todd-Brown, K. E. O., Randerson, J. T., Hopkins, F., Arora, V., Hajima, T., Jones, C., Shevliakova, E., Tjiputra, J., Volodin, E., Wu, T., Zhang, Q., and Allison, S. D.: Changes in soil organic carbon storage predicted by Earth system models during the 21st century, Biogeosciences, 11, 2341–2356, https://doi.org/10.5194/bg-11-2341-2014, 2014.
Tramontana, G., Jung, M., Schwalm, C. R., Ichii, K., Camps-Valls, G., Ráduly, B., Reichstein, M., Arain, M. A., Cescatti, A., Kiely, G., Merbold, L., Serrano-Ortiz, P., Sickert, S., Wolf, S., and Papale, D.: Predicting carbon dioxide and energy fluxes across global FLUXNET sites with regression algorithms, Biogeosciences, 13, 4291–4313, https://doi.org/10.5194/bg-13-4291-2016, 2016.
Wieder, W. R., Allison, S. D., Davidson, E. A., Georgiou, K., Hararuk, O.,
He, Y. J., Hopkins, F., Luo, Y. Q., Smith, M. J., Sulman, B., Todd-Brown,
K., Wang, Y. P., Xia, J. Y., and Xu, X. F.: Explicitly representing soil
microbial processes in Earth system models, Global Biogeochem. Cy., 29,
1782–1800, 2015.
Zaehle, S., Medlyn, B. E., De Kauwe, M. G., Walker, A. P., Dietze, M. C.,
Hickler, T., Luo, Y. Q., Wang, Y. P., El-Masri, B., Thornton, P., Jain, A.,
Wang, S. S., Warlind, D., Weng, E. S., Parton, W., Iversen, C. M.,
Gallet-Budynek, A., McCarthy, H., Finzi, A. C., Hanson, P. J., Prentice, I.
C., Oren, R., and Norby, R. J.: Evaluation of 11 terrestrial carbon-nitrogen
cycle models against observations from two temperate Free-Air CO2 Enrichment studies, New Phytol., 202, 803–822, 2014.
Zhu, Q., Riley, W. J., Tang, J., and Koven, C. D.: Multiple soil nutrient competition between plants, microbes, and mineral surfaces: model development, parameterization, and example applications in several tropical forests, Biogeosciences, 13, 341–363, https://doi.org/10.5194/bg-13-341-2016, 2016.
Zhu, Q., Riley, W. J., and Tang, J. Y.: A new theory of plant-microbe
nutrient competition resolves inconsistencies between observations and model
predictions, Ecol. Appl., 27, 875–886, 2017.
Zhu, Q., Riley, W. J., Tang, J. Y., Collier, N., Hoffman, F. M., Yang, X.
J., and Bisht, G.: Representing nitrogen, phosphorus, and carbon
interactions in the E3SM land model: development and dlobal benchmarking, J. Adv. Model. Earth. Sy., 11, 2238–2258, 2019.
Short summary
We here describe version 2 of BeTR, a reactive transport model created to help ease the development of biogeochemical capability in Earth system models that are used for quantifying ecosystem–climate feedbacks. We then coupled BeTR-v2 to the Energy Exascale Earth System Model to quantify how different numerical couplings of plants and soils affect simulated ecosystem biogeochemistry. We found that different couplings lead to significant uncertainty that is not correctable by tuning parameters.
We here describe version 2 of BeTR, a reactive transport model created to help ease the...
